Citrus Sinensis ID: 017569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHccccEEEEEEEEcccccEEEcHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccEEEEcccccccccccccEEEEEcccccccccEEEEccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccHEHHHHHHHHHEEEEcEEEEcccccEEEcHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEcccccEEccccccccEEEEEcccEEEEEccccccccEccccEEEEEccHHHccHHHEEEEEccccccccEEEEccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
mvisttetdsreILSSTFASRYVraaiprfkmpdnsmpkeAAYQVINDElmldgnprlnLASFVTTwmepecdkLVMASINknyvdmdeypvtTELQNRCVNMIAHLfntpvaddktavgvgtvGSSEAIMLAGLAFKRKWQQKRkeqgkpydkpnivtganVQVCWEKFARYFEVELKEVkleegyyvmnpvkAVELVDENTICVAAILGstltgefedVKLLHDLLTKkneetgwdtpihvdaasggfiapflypdlewdfrlplvksinvsghKYGLVYAGVGWVvwrtkddlpdeLVFHINylgsdqptftlnfsKGSSQIIAQYYQFIRLGFevipsfccvdhkklsSFFVIHssyfydtlhvl
Flexible Loop (DISEMBL)
mvisttetdsreilsstfasryVRAAiprfkmpdnsmPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFntpvaddktAVGVGTVGSSEAIMLAGLAFKRKWQQKRKeqgkpydkpnivtganVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Low Complexity Region (SEG)
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFevelkevkleeGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Disordered region (IsUnstruct)
*****************FASRYVRAAIPR***********AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ***********KPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH**
Disordered Region (DISOPRED)
******************A*RYVRAAI*RF*****SMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Disordered Region (DISEMBL)
************ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK**********PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Disordered Region (DISPRO)
*******************SRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLHVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
P54767	502	Glutamate decarboxylase O	N/A	no	0.915	0.673	0.870	1e-180
Q07346	500	Glutamate decarboxylase O	N/A	no	0.915	0.676	0.866	1e-179
Q9ZPS3	493	Glutamate decarboxylase 4	yes	no	0.915	0.685	0.860	1e-178
Q9LSH2	494	Glutamate decarboxylase 5	no	no	0.913	0.682	0.869	1e-177
Q42521	502	Glutamate decarboxylase 1	no	no	0.915	0.673	0.849	1e-177
Q9ZPS4	500	Glutamate decarboxylase 3	no	no	0.915	0.676	0.825	1e-171
Q42472	494	Glutamate decarboxylase 2	no	no	0.913	0.682	0.822	1e-171
Q54VQ5	462	Glutamate decarboxylase A	yes	no	0.934	0.746	0.491	9e-96
P69912	466	Glutamate decarboxylase b	yes	no	0.894	0.708	0.5	2e-95
P69910	466	Glutamate decarboxylase b	N/A	no	0.894	0.708	0.5	2e-95

>sp|P54767|DCE_SOLLC Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1

 Score =  631 bits (1627), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 295/339 (87%), Positives = 321/339 (94%), Gaps = 1/339 (0%)

Query: 1   MVISTTET-DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           MV++TT   DS E L  TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLN
Sbjct: 1   MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAV
Sbjct: 61  LASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL+EGYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN+ETGW+T
Sbjct: 181 EVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWET 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPDE
Sbjct: 241 PIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFE
Sbjct: 301 LVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFE 339

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
Solanum lycopersicum (taxid: 4081)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|Q07346|DCE_PETHY Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1

 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 293/338 (86%), Positives = 315/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T + S   + STFASRYVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ K K QGKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVK L+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR KDDLPDEL
Sbjct: 241 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Petunia hybrida (taxid: 4102)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9ZPS3|DCE4_ARATH Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=2 SV=1

 Score =  625 bits (1612), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 291/338 (86%), Positives = 316/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVR ++PRF+MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTVSESDVSIHSTFASRYVRNSLPRFEMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIA LFN P+ D + AVG
Sbjct: 61  ASFVTTWMEPECDKLMMESINKNYVDMDEYPVTTELQNRCVNMIARLFNAPLGDGEAAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKR+WQ KRK QG PYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRQWQNKRKAQGLPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           V L E YYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct: 181 VNLREDYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLVEKNKQTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9LSH2|DCE5_ARATH Glutamate decarboxylase 5 OS=Arabidopsis thaliana GN=GAD5 PE=2 SV=1

 Score =  622 bits (1604), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/338 (86%), Positives = 315/338 (93%), Gaps = 1/338 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV++T  +DS E L STFASRYVRA +PRFKMPD+ MPK+AAYQVINDELMLDGNPRLNL
Sbjct: 1   MVLATN-SDSDEHLHSTFASRYVRAVVPRFKMPDHCMPKDAAYQVINDELMLDGNPRLNL 59

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M S+NKNYVDMDEYPVTTELQNRCVNMIA+LF+ PV +D+ A+G
Sbjct: 60  ASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG 119

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
            GTVGSSEAIMLAGLAFKRKWQ +RK QG P DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 120 CGTVGSSEAIMLAGLAFKRKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL E YYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVK L+DLL +KN ETGW+TP
Sbjct: 180 VKLSEDYYVMDPAKAVEMVDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETP 239

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYPDLEWDFRLP VKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 240 IHVDAASGGFIAPFLYPDLEWDFRLPWVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 299

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           VFHINYLG+DQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 300 VFHINYLGADQPTFTLNFSKGSSQIIAQYYQFIRLGFE 337

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2

 Score =  622 bits (1604), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 287/338 (84%), Positives = 317/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9ZPS4|DCE3_ARATH Glutamate decarboxylase 3 OS=Arabidopsis thaliana GN=GAD3 PE=2 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 279/338 (82%), Positives = 309/338 (91%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T + S + + STFASRYVR +I RF++P NS+PKEAAYQ+INDEL  DGNPRLNL
Sbjct: 1   MVLSKTASKSDDSIHSTFASRYVRNSISRFEIPKNSIPKEAAYQIINDELKFDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKN V+MD+YPVTT+LQNRCVNMIA LFN P+ D + A+G
Sbjct: 61  ASFVTTWMEPECDKLMMESINKNNVEMDQYPVTTDLQNRCVNMIARLFNAPLGDGEAAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEA+MLAGLAFKR+WQ KRK  G PYD+PNIVTGAN+QVC EKFARYFEVELKE
Sbjct: 121 VGTVGSSEAVMLAGLAFKRQWQNKRKALGLPYDRPNIVTGANIQVCLEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICV AILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct: 181 VKLREGYYVMDPDKAVEMVDENTICVVAILGSTLTGEFEDVKLLNDLLVEKNKKTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q42472|DCE2_ARATH Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1

 Score =  600 bits (1546), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 278/338 (82%), Positives = 309/338 (91%), Gaps = 1/338 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV++ T T+  E + + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNL
Sbjct: 1   MVLTKTATND-ESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNL 59

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVG
Sbjct: 60  ASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVG 119

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 120 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           V L EGYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL KKNEETGW+TP
Sbjct: 180 VNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTP 239

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR  +DLP+EL
Sbjct: 240 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEEL 299

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 300 IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 337

Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q54VQ5|GADA_DICDI Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1

 Score =  350 bits (898), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 172/350 (49%), Positives = 237/350 (67%), Gaps = 5/350 (1%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NL
Sbjct: 1   MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           A+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P + +   +G
Sbjct: 61  ATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSE--TIG 118

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
             T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF++EL+E
Sbjct: 119 CSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELRE 177

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           V +E   Y+M P +A++  DENTI V   LG T T ++EDVK + + L K  +ETG D P
Sbjct: 178 VPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIP 237

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGF+APFL P++ WDFRLP VKSIN SGHK+GL   GVGWVVWR K+D+  +L
Sbjct: 238 IHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDL 297

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDH 348
           VF +NYLG + PTF+LNFS+   QI+ QYY F+R G     +    C+DH
Sbjct: 298 VFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDH 347

Generates GABA from glutamate. GABA induces the release of acbA from prespore cells and induces the exposure of tagC on the surface of prestalk cells where it can convert acbA to SDF-2. Glutamate acts as a competitive inhibitor.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P69912|DCEB_SHIFL Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=3 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 226/332 (68%), Gaps = 2/332 (0%)

Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LG    TF +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 337

Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.

Shigella flexneri (taxid: 623)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P69910|DCEB_ECOLI Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 226/332 (68%), Gaps = 2/332 (0%)

Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LG    TF +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 337

Converts glutamate to gamma-aminobutyrate (GABA), consuming one intracellular proton in the reaction. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
224120428	501	predicted protein [Populus trichocarpa]	0.915	0.674	0.902	0.0
255573511	529	glutamate decarboxylase, putative [Ricin	0.915	0.638	0.896	0.0
225462892	505	PREDICTED: glutamate decarboxylase-like	0.981	0.716	0.835	0.0
255575222	498	glutamate decarboxylase, putative [Ricin	0.915	0.678	0.872	0.0
357163796	488	PREDICTED: glutamate decarboxylase-like	0.915	0.692	0.873	1e-179
226532026	489	LOC100284551 [Zea mays] gi|195642944|gb|	0.915	0.691	0.867	1e-178
296088812	487	unnamed protein product [Vitis vinifera]	0.981	0.743	0.818	1e-178
70609690	494	glutamate decarboxylase [Citrus sinensis	0.915	0.684	0.863	1e-178
350537523	502	glutamate decarboxylase [Solanum lycoper	0.915	0.673	0.870	1e-178
224079722	498	predicted protein [Populus trichocarpa]	0.915	0.678	0.855	1e-178

>gi|224120428|ref|XP_002318327.1| predicted protein [Populus trichocarpa] gi|222859000|gb|EEE96547.1| predicted protein [Populus trichocarpa]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/338 (90%), Positives = 324/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVIST  TDS E L STFASRYVR A+PRFKMP+NSMPK+AAYQVINDELMLDGNPRLNL
Sbjct: 1   MVISTAATDSDENLYSTFASRYVRTALPRFKMPENSMPKDAAYQVINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPEC+ L+MASINKNYVDMDEYPVTTELQNRCVN+IAHLFN PV + +TAVG
Sbjct: 61  ASFVTTWMEPECNDLIMASINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPVGEKETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL+KKN+ETGW+TP
Sbjct: 181 VKLTEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLSKKNKETGWNTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF++PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK+DLPDEL
Sbjct: 241 IHVDAASGGFIAPFIWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKEDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGS QIIAQYYQFIRLGFE
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSGQIIAQYYQFIRLGFE 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573511|ref|XP_002527680.1| glutamate decarboxylase, putative [Ricinus communis] gi|223532911|gb|EEF34679.1| glutamate decarboxylase, putative [Ricinus communis]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/338 (89%), Positives = 324/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT TDS E+L STFASRYVR  +PRFKMP+ SMPKEAAYQVINDELMLDGNPRLNL
Sbjct: 40  MVISTTITDSDEVLHSTFASRYVRTPVPRFKMPEKSMPKEAAYQVINDELMLDGNPRLNL 99

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPEC+ L+MASINKNYVDMDEYPVTTELQ+RCVNMIAH+F+ PV DD+TAVG
Sbjct: 100 ASFVTTWMEPECNNLIMASINKNYVDMDEYPVTTELQDRCVNMIAHMFHAPVGDDETAVG 159

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KR  +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 160 VGTVGSSEAIMLAGLAFKRKWQHKRIAEGKPSDKPNIVTGANVQVCWEKFARYFEVELKE 219

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL+EGYYVM+PVKAVE+VDENTIC+AAILGSTLTGEFEDVKLL +LLTK+NEETGW+TP
Sbjct: 220 VKLKEGYYVMDPVKAVEMVDENTICIAAILGSTLTGEFEDVKLLSELLTKRNEETGWNTP 279

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK+DLP+EL
Sbjct: 280 IHVDAASGGFIAPFVYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKEDLPEEL 339

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE
Sbjct: 340 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462892|ref|XP_002263081.1| PREDICTED: glutamate decarboxylase-like [Vitis vinifera]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/364 (83%), Positives = 334/364 (91%), Gaps = 2/364 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT +DS E L +TFASRYVR  +P+FKMP+ S+PKEAA+Q+I+DELMLDGNPRLNL
Sbjct: 1   MVISTTISDSSEHLHATFASRYVRDPLPKFKMPERSIPKEAAFQIISDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWME ECDKL+MAS+NKNYVDMDEYPVTTELQNRCVNMIAHLFN PV +++TA+G
Sbjct: 61  ASFVTTWMEEECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPVGENETAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQQKRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN ETGW TP
Sbjct: 181 VKLREGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 241 IHVDAASGGFIAPFLHPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFC--CVDHKKLSSFFVIH 358
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE   +    C+D+  +    ++ 
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMTNCMDNANVLKQGLVE 360

Query: 359 SSYF 362
           +  F
Sbjct: 361 TGRF 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575222|ref|XP_002528515.1| glutamate decarboxylase, putative [Ricinus communis] gi|223532075|gb|EEF33884.1| glutamate decarboxylase, putative [Ricinus communis]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/338 (87%), Positives = 323/338 (95%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVRA++PRFKMP++S+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTASESDVSVHSTFASRYVRASLPRFKMPESSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MASINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL +GYYVM+PVKAVE+VDENTICVAAILGSTL GEFEDVKLL+DLLT+KN++TGWDTP
Sbjct: 181 VKLRDGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKQTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR KDDLPDEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKDDLPDEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163796|ref|XP_003579849.1| PREDICTED: glutamate decarboxylase-like [Brachypodium distachyon]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/339 (87%), Positives = 317/339 (93%), Gaps = 1/339 (0%)

Query: 1   MVISTTETDSRE-ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           M +S  +T+  E ++SSTFASRYVRAA+PRFK+P+ S+PKEAAYQ+INDELMLDGNPRLN
Sbjct: 1   MALSRAQTNHGESLISSTFASRYVRAALPRFKIPEQSIPKEAAYQIINDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFVTTWMEPECDKL+  SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ DD+TAV
Sbjct: 61  LASFVTTWMEPECDKLIQNSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ K K  GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL EGYYVM+P KAVELVDENTICVAAILGSTL GEFEDVK+L+DLL  KN ETGWDT
Sbjct: 181 EVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKMLNDLLVAKNAETGWDT 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE
Sbjct: 241 PIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           L+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 301 LIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 339

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532026|ref|NP_001150918.1| LOC100284551 [Zea mays] gi|195642944|gb|ACG40940.1| glutamate decarboxylase [Zea mays] gi|414587022|tpg|DAA37593.1| TPA: glutamate decarboxylase [Zea mays]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/340 (86%), Positives = 317/340 (93%), Gaps = 2/340 (0%)

Query: 1   MVISTTETDSRE--ILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL 58
           M +STT T++ E  +  STFASRYVR A+PRFK+P+ S+PKEAAYQ+INDELMLDGNPRL
Sbjct: 1   MALSTTNTNAAESQLHCSTFASRYVRTALPRFKIPEQSIPKEAAYQIINDELMLDGNPRL 60

Query: 59  NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA 118
           NLASFVTTWMEPECDKL+ +SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ DD+TA
Sbjct: 61  NLASFVTTWMEPECDKLIQSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETA 120

Query: 119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL 178
           VGVGTVGSSEAIMLAGLAFKRKWQ K K  GKPYDKPNIVTGANVQVCWEKFARYFEVEL
Sbjct: 121 VGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDKPNIVTGANVQVCWEKFARYFEVEL 180

Query: 179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
           KEVKL+EGYYVM+P KA E+VDENTICVAAILGSTL GEFEDVKLL DLLT KN ETGWD
Sbjct: 181 KEVKLKEGYYVMDPEKAAEMVDENTICVAAILGSTLNGEFEDVKLLSDLLTAKNAETGWD 240

Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
           TPIHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPD
Sbjct: 241 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPD 300

Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 340

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088812|emb|CBI38262.3| unnamed protein product [Vitis vinifera]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/364 (81%), Positives = 329/364 (90%), Gaps = 2/364 (0%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MVISTT +DS E L +TFASRYVR  +P+FKMP+ S+PKEAA+Q+I+DELMLDGNPRLNL
Sbjct: 1   MVISTTISDSSEHLHATFASRYVRDPLPKFKMPERSIPKEAAFQIISDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWME ECDKL+MAS+NKNYVDMDEYP+     NRCVNMIAHLFN PV +++TA+G
Sbjct: 61  ASFVTTWMEEECDKLIMASVNKNYVDMDEYPLVGPHHNRCVNMIAHLFNAPVGENETAIG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQQKRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN ETGW TP
Sbjct: 181 VKLREGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct: 241 IHVDAASGGFIAPFLHPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFC--CVDHKKLSSFFVIH 358
           +FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE   +    C+D+  +    ++ 
Sbjct: 301 IFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMTNCMDNANVLKQGLVE 360

Query: 359 SSYF 362
           +  F
Sbjct: 361 TGRF 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70609690|gb|AAZ05070.1| glutamate decarboxylase [Citrus sinensis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/338 (86%), Positives = 320/338 (94%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S E + STFASRYVR ++PRF MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MA+INKNYVDMDEYPVTTELQNRCVN+IA LFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVKLL+DLLT+KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPAKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537523|ref|NP_001234041.1| glutamate decarboxylase [Solanum lycopersicum] gi|1706318|sp|P54767.1|DCE_SOLLC RecName: Full=Glutamate decarboxylase; Short=GAD; AltName: Full=ERT D1 gi|995555|emb|CAA56812.1| unnamed protein product [Solanum lycopersicum]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/339 (87%), Positives = 321/339 (94%), Gaps = 1/339 (0%)

Query: 1   MVISTTET-DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLN 59
           MV++TT   DS E L  TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLN
Sbjct: 1   MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLN 60

Query: 60  LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119
           LASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAV
Sbjct: 61  LASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAV 120

Query: 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK 179
           GVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFEVELK
Sbjct: 121 GVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELK 180

Query: 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
           EVKL+EGYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKLL++LLTKKN+ETGW+T
Sbjct: 181 EVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWET 240

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           PIHVDAASGGFIAPFL+PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV+WR+K+DLPDE
Sbjct: 241 PIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRSKEDLPDE 300

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFE
Sbjct: 301 LVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFE 339

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079722|ref|XP_002305927.1| predicted protein [Populus trichocarpa] gi|222848891|gb|EEE86438.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 289/338 (85%), Positives = 320/338 (94%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S T ++S   + STFASRYVRA++PRFKMP+NS+PKEAA+Q+INDELMLDGNPRLNL
Sbjct: 1   MVLSKTASESDVSVHSTFASRYVRASLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+MASINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL +GYYVM+P KAV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ TGWDTP
Sbjct: 181 VKLSDGYYVMDPEKAVQMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKSTGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYE 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2041130	493	GAD4 "glutamate decarboxylase	0.915	0.685	0.834	1.3e-155
TAIR|locus:2089779	494	GAD5 "glutamate decarboxylase	0.945	0.706	0.812	2.1e-155
TAIR|locus:2167240	502	GAD "glutamate decarboxylase"	0.915	0.673	0.819	1.9e-154
TAIR|locus:2009704	494	GAD2 "glutamate decarboxylase	0.913	0.682	0.795	2.3e-149
TAIR|locus:2041120	500	GAD3 "glutamate decarboxylase	0.915	0.676	0.795	1.6e-148
ASPGD|ASPL0000028885	515	AN5447 [Emericella nidulans (t	0.888	0.636	0.588	2e-104
UNIPROTKB|G4MR06	517	MGG_02378 "Glutamate decarboxy	0.878	0.626	0.584	1.4e-101
ASPGD|ASPL0000065145	521	AN7278 [Emericella nidulans (t	0.861	0.610	0.555	1.6e-95
DICTYBASE|DDB_G0280199	462	gadA "glutamate decarboxylase"	0.932	0.744	0.475	8e-85
UNIPROTKB|P69910	466	gadB "glutamate decarboxylase	0.894	0.708	0.487	8e-85

TAIR|locus:2041130 GAD4 "glutamate decarboxylase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
 Identities = 282/338 (83%), Positives = 307/338 (90%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S T ++S   + STFASRYVR ++PRF+MP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct:     1 MVLSKTVSESDVSIHSTFASRYVRNSLPRFEMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIA LFN P+ D + AVG
Sbjct:    61 ASFVTTWMEPECDKLMMESINKNYVDMDEYPVTTELQNRCVNMIARLFNAPLGDGEAAVG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKR+WQ KRK QG PYDKPNIVTGANVQVCWEKFARYF      
Sbjct:   121 VGTVGSSEAIMLAGLAFKRQWQNKRKAQGLPYDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                   YYVM+PVKAVE+VDENTICVAAILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct:   181 VNLREDYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNDLLVEKNKQTGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct:   241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2089779 GAD5 "glutamate decarboxylase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 286/352 (81%), Positives = 311/352 (88%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV++T  +DS E L STFASRYVRA +PRFKMPD+ MPK+AAYQVINDELMLDGNPRLNL
Sbjct:     1 MVLATN-SDSDEHLHSTFASRYVRAVVPRFKMPDHCMPKDAAYQVINDELMLDGNPRLNL 59

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M S+NKNYVDMDEYPVTTELQNRCVNMIA+LF+ PV +D+ A+G
Sbjct:    60 ASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANLFHAPVGEDEAAIG 119

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
              GTVGSSEAIMLAGLAFKRKWQ +RK QG P DKPNIVTGANVQVCWEKFARYF      
Sbjct:   120 CGTVGSSEAIMLAGLAFKRKWQHRRKAQGLPIDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                   YYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVK L+DLL +KN ETGW+TP
Sbjct:   180 VKLSEDYYVMDPAKAVEMVDENTICVAAILGSTLTGEFEDVKQLNDLLAEKNAETGWETP 239

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYPDLEWDFRLP VKSINVSGHKYGLVYAGVGWVVWRTKDDLP+EL
Sbjct:   240 IHVDAASGGFIAPFLYPDLEWDFRLPWVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEEL 299

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFC--CVDHKK 350
             VFHINYLG+DQPTFTLNFSKGSSQIIAQYYQFIRLGFE   +    C+D+ +
Sbjct:   300 VFHINYLGADQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMDNAR 351

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167240 GAD "glutamate decarboxylase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 277/338 (81%), Positives = 307/338 (90%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct:     1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct:    61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF      
Sbjct:   121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct:   181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct:   241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;TAS;IPI

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2009704 GAD2 "glutamate decarboxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 269/338 (79%), Positives = 300/338 (88%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV++ T T+  E + + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNL
Sbjct:     1 MVLTKTATND-ESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNL 59

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVG
Sbjct:    60 ASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVG 119

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYF      
Sbjct:   120 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 179

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK L+DLL KKNEETGW+TP
Sbjct:   180 VNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTP 239

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPF+YP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWR  +DLP+EL
Sbjct:   240 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRAAEDLPEEL 299

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFE
Sbjct:   300 IFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFE 337

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0006536 "glutamate metabolic process" evidence=IEA;IDA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0006807 "nitrogen compound metabolic process" evidence=TAS

TAIR|locus:2041120 GAD3 "glutamate decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
 Identities = 269/338 (79%), Positives = 299/338 (88%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             MV+S T + S + + STFASRYVR +I RF++P NS+PKEAAYQ+INDEL  DGNPRLNL
Sbjct:     1 MVLSKTASKSDDSIHSTFASRYVRNSISRFEIPKNSIPKEAAYQIINDELKFDGNPRLNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             ASFVTTWMEPECDKL+M SINKN V+MD+YPVTT+LQNRCVNMIA LFN P+ D + A+G
Sbjct:    61 ASFVTTWMEPECDKLMMESINKNNVEMDQYPVTTDLQNRCVNMIARLFNAPLGDGEAAIG 120

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
             VGTVGSSEA+MLAGLAFKR+WQ KRK  G PYD+PNIVTGAN+QVC EKFARYF      
Sbjct:   121 VGTVGSSEAVMLAGLAFKRQWQNKRKALGLPYDRPNIVTGANIQVCLEKFARYFEVELKE 180

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                  GYYVM+P KAVE+VDENTICV AILGSTLTGEFEDVKLL+DLL +KN++TGWDTP
Sbjct:   181 VKLREGYYVMDPDKAVEMVDENTICVVAILGSTLTGEFEDVKLLNDLLVEKNKKTGWDTP 240

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG+GWVVWRTK DLPDEL
Sbjct:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDEL 300

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLGFE
Sbjct:   301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFE 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

ASPGD|ASPL0000028885 AN5447 [Emericella nidulans (taxid:162425)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 197/335 (58%), Positives = 247/335 (73%)

Query:     3 ISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLAS 62
             + T E D  +  ++ + +R+    +P  +MPD  MP+E AY++I DEL LDGNP LNLAS
Sbjct:    25 LDTIEED--DYSATVYGTRFATQQLPHAEMPDREMPREVAYRMIKDELSLDGNPMLNLAS 82

Query:    63 FVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPV-ADDKTAVGV 121
             FVTT+ME E +KL+  S +KN++D +EYP + E+QNRCVNMIA LFN P  +D    +G 
Sbjct:    83 FVTTYMEDEAEKLMAESFSKNFIDYEEYPQSAEIQNRCVNMIARLFNAPTDSDTDHPMGT 142

Query:   122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXX 181
              TVGSSEAIML  LA K++WQ KRK +GK Y +PNIV  + VQVCWEK ARYF       
Sbjct:   143 STVGSSEAIMLGTLAMKKRWQNKRKAEGKDYSRPNIVMNSAVQVCWEKAARYFDVEERYV 202

Query:   182 XXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI 241
                   YV++P +AV+LVDENTI + AILG+T TGE+EDVK ++DLL     E G D PI
Sbjct:   203 YCTEERYVIDPQQAVDLVDENTIGICAILGTTYTGEYEDVKAINDLLV----ERGLDCPI 258

Query:   242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301
             HVDAASGGF+APF++P L+WDFRL  V SINVSGHKYGLVY GVGWVVWR+ + LP EL+
Sbjct:   259 HVDAASGGFVAPFIHPTLQWDFRLEKVVSINVSGHKYGLVYPGVGWVVWRSPEFLPKELI 318

Query:   302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336
             F+INYLG++Q +FTLNFSKG+S +I QYYQ IRLG
Sbjct:   319 FNINYLGAEQASFTLNFSKGASHVIGQYYQMIRLG 353

GO:0006540 "glutamate decarboxylation to succinate" evidence=RCA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;RCA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006538 "glutamate catabolic process" evidence=IEA

UNIPROTKB|G4MR06 MGG_02378 "Glutamate decarboxylase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 193/330 (58%), Positives = 242/330 (73%)

Query:     9 DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWM 68
             D  +  +S + SR+    +P+ +M +N MPKE AY++I DEL LDGNP LNLASFVTT+M
Sbjct:    31 DEDKFTTSVYGSRFAIDDLPKHEMAENEMPKEVAYRMIKDELSLDGNPMLNLASFVTTYM 90

Query:    69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPV--ADDKTAVGVGTVGS 126
             E E +KL+  S +KN++D +EYP + ++QNRCV MI  LFN PV  ++   AVG   VGS
Sbjct:    91 EEEAEKLMADSFSKNFIDYEEYPQSADIQNRCVAMIGRLFNAPVGASEGVGAVGTSCVGS 150

Query:   127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
             SEAIMLA LA K++W+ KR  +GK  DKPN++  + VQVCWEK  RYF            
Sbjct:   151 SEAIMLAVLAMKKRWKNKRLAEGKSVDKPNLIMSSAVQVCWEKATRYFEVEEKLVYCSPD 210

Query:   187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              YV++P + V+LVDENTI +  ILG+T TGE+EDV+ ++DLL     E G +TPIHVDAA
Sbjct:   211 RYVIDPKETVDLVDENTIGICVILGTTYTGEYEDVRAVNDLLN----ERGLETPIHVDAA 266

Query:   247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
             SGGF+APF+ PDLEWDFR   V SINVSGHKYGLVY GVGWVVWR+ + LP ELVF+INY
Sbjct:   267 SGGFVAPFVVPDLEWDFRCDRVVSINVSGHKYGLVYPGVGWVVWRSAEFLPQELVFNINY 326

Query:   307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336
             LG+DQ +FTLNFSKG+SQ+I QYYQ IRLG
Sbjct:   327 LGADQASFTLNFSKGASQVIGQYYQLIRLG 356

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000065145 AN7278 [Emericella nidulans (taxid:162425)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 186/335 (55%), Positives = 234/335 (69%)

Query:    15 SSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDK 74
             +  + ++Y    +P + M DN MP + A Q+I DEL LDGNP LN+ASFVTT+MEP+ + 
Sbjct:    31 AGVYGTKYAAEELPLYVMNDNGMPPDVAEQMIRDELSLDGNPLLNMASFVTTYMEPQVET 90

Query:    75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKT-------------AVGV 121
             L+ A++ KN++D ++YP +  +Q RCVNMIA LFN P   +               A+G 
Sbjct:    91 LMAAAMRKNFIDFEQYPQSARMQTRCVNMIADLFNAPTNQESKEGTEHGESEGAEGAMGT 150

Query:   122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXX 181
              TVGSSEAIMLA LA K+ W +KR + GK    PNI+  + VQVCWEK ARYF       
Sbjct:   151 STVGSSEAIMLALLAMKKTWHKKRSDAGKDTSHPNIIMNSAVQVCWEKAARYFDVEERYC 210

Query:   182 XXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI 241
                   YV++PV+AVELVDENTI + AI+G+T TG +EDVK ++DLL ++N     D PI
Sbjct:   211 YCTDDRYVIDPVQAVELVDENTIGICAIMGTTYTGHYEDVKAINDLLVQRNI----DCPI 266

Query:   242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301
             HVDAASGGF+APF+ P+L WDFRL  V SINVSGHKYGLVY GVGW+ WR+ + LP ELV
Sbjct:   267 HVDAASGGFVAPFICPELVWDFRLEKVVSINVSGHKYGLVYPGVGWIFWRSPEYLPRELV 326

Query:   302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336
             F+INYLGS+Q TFTLNFSKG+S II QYYQ IRLG
Sbjct:   327 FNINYLGSEQATFTLNFSKGASHIIGQYYQLIRLG 361

GO:0006540 "glutamate decarboxylation to succinate" evidence=RCA

GO:0004351 "glutamate decarboxylase activity" evidence=RCA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0280199 gadA "glutamate decarboxylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 167/351 (47%), Positives = 229/351 (65%)

Query:     1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
             M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NL
Sbjct:     1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNL 60

Query:    61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
             A+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P + +   +G
Sbjct:    61 ATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSE--TIG 118

Query:   121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
               T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF      
Sbjct:   119 CSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELRE 177

Query:   181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                    Y+M P +A++  DENTI V   LG T T ++EDVK + + L K  +ETG D P
Sbjct:   178 VPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIP 237

Query:   241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
             IHVDAASGGF+APFL P++ WDFRLP VKSIN SGHK+GL   GVGWVVWR K+D+  +L
Sbjct:   238 IHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDL 297

Query:   301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR---LGFEVIPSFCCVDH 348
             VF +NYLG + PTF+LNFS+   QI+ QYY F+R    G+  +    C+DH
Sbjct:   298 VFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQ-ACLDH 347

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006538 "glutamate catabolic process" evidence=ISS

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|P69910 gadB "glutamate decarboxylase B subunit" [Escherichia coli K-12 (taxid:83333)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 162/332 (48%), Positives = 218/332 (65%)

Query:     8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
             TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct:     7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66

Query:    67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
             W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct:    67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126

Query:   127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
             SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct:   127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185

Query:   187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
                M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct:   186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245

Query:   247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
             SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct:   246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305

Query:   307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
             LG    TF +NFS+ + Q+IAQYY+F+RLG E
Sbjct:   306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 337

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0004351 "glutamate decarboxylase activity" evidence=IEA;IDA

GO:0051454 "intracellular pH elevation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54767	DCE_SOLLC	4, ., 1, ., 1, ., 1, 5	0.8702	0.9159	0.6733	N/A	no
Q9ZPS3	DCE4_ARATH	4, ., 1, ., 1, ., 1, 5	0.8609	0.9159	0.6855	yes	no
Q07346	DCE_PETHY	4, ., 1, ., 1, ., 1, 5	0.8668	0.9159	0.676	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.15	0.946
3rd Layer	4.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	0.0
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-107
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	1e-101
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	2e-79
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	6e-29
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	2e-27
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	3e-08
PLN02263	470	PLN02263, PLN02263, serine decarboxylase	0.003
PLN03032	374	PLN03032, PLN03032, serine decarboxylase; Provisio	0.003

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score =  604 bits (1560), Expect = 0.0
 Identities = 214/323 (66%), Positives = 265/323 (82%), Gaps = 1/323 (0%)

Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S + SR V   IP+++MP+  MP +AAYQ+I+DEL LDGNPRLNLA+FVTTWMEPE  KL
Sbjct: 1   SAYGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNLATFVTTWMEPEARKL 60

Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  +INKN +D DEYP T E++NRCVNM+A L++ P  D + AVG  T+GSSEAIML GL
Sbjct: 61  MDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAE-AVGTSTIGSSEAIMLGGL 119

Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G+NVQVCWEKFARYF+VEL+EV ++ G YV++P + 
Sbjct: 120 AMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQV 179

Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           VE VDENTI V  ILG+T TGE+EDVK L+D L + N +TGWD PIHVDAASGGFIAPF+
Sbjct: 180 VEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFV 239

Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
           YPDLEWDFRLP VKSINVSGHKYGLVY GVGWV+WR ++ LP+EL+FH+NYLG D+PTFT
Sbjct: 240 YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFT 299

Query: 316 LNFSKGSSQIIAQYYQFIRLGFE 338
           LNFS+ ++Q+IAQYY F+RLG E
Sbjct: 300 LNFSRPANQVIAQYYNFLRLGRE 322

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  319 bits (819), Expect = e-107
 Identities = 97/342 (28%), Positives = 139/342 (40%), Gaps = 47/342 (13%)

Query: 33  PDNSMP-KEAAYQVIND-ELMLDGNPRLNLASFVTTWMEPECDKLVMA------------ 78
           P    P    A  +I +  L + G+ R N+   VTTW  P       A            
Sbjct: 1   PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60

Query: 79  --SINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD--DKTAVGVGTVGSSEAIMLAG 134
             +IN N    +  P  TEL+N  ++ +A +   P          GV   GSSE+ +LA 
Sbjct: 61  SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120

Query: 135 LAFKRKWQQKRKEQGKPY-DKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMN 191
           LA + KW ++ K  GKP   K    T        EK A    VEL+E+  +E      M+
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMD 180

Query: 192 PVKAVELVDENT---ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG 248
             KA+E   EN      V A LG+T +G F+ ++ L D+  K      +D  +HVDAA  
Sbjct: 181 LEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNK------YDLWLHVDAAYA 234

Query: 249 G--FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           G  FI P       W F +    S + + HK+ LV      +  R K  L   L F+  Y
Sbjct: 235 GSAFICPEFRH---WLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEY 291

Query: 307 LGS---------DQPTFTLNFSKGSSQIIAQYYQFIR-LGFE 338
           LG          D   + +  S+     I + +  +R  G E
Sbjct: 292 LGHNDKQSDVAVDYGDWQIPLSRR--FRILKLWFVLRSYGVE 331

Length = 373

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  306 bits (785), Expect = e-101
 Identities = 129/333 (38%), Positives = 173/333 (51%), Gaps = 14/333 (4%)

Query: 10  SREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWME 69
           S + LS  F +       P    P   +  E A  +I DEL LDG+PR NLA F  T + 
Sbjct: 16  SGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVP 75

Query: 70  PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
           P   +L+++++NKN  D DE P   EL+ R VNM++ L   P      A G  T G +EA
Sbjct: 76  PVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE----ASGTFTSGGTEA 131

Query: 130 IMLAGLAFKRKW-QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYY 188
            +LA LA + +W ++   E GKP  KPNIV        +EK ARY  + L+ V      Y
Sbjct: 132 NLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDY 191

Query: 189 VMNPVKAVELVDENTI--CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
            ++     E +DENTI   V    G+T TG  +D++ L D+  +      +   +HVDAA
Sbjct: 192 RIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEE------YGIWLHVDAA 245

Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
            GGF+ PFL PD  WDF L  V SI V GHKYGL   G G V++R ++ L   L+F   Y
Sbjct: 246 FGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYY 305

Query: 307 L-GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           L G   P FT+  S+   Q +A Y    RLG E
Sbjct: 306 LPGGGIPNFTILGSRPGRQALALYANLRRLGRE 338

Length = 460

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  246 bits (631), Expect = 2e-79
 Identities = 92/289 (31%), Positives = 128/289 (44%), Gaps = 54/289 (18%)

Query: 59  NLASFVTTWMEPECDKLVMASINKNYVDM--DEYPVTTELQNRCVNMIAHLFNTPVADDK 116
            LA FVTT M+P    L M +  KN +D   DE P  TE++   VN +A LF       +
Sbjct: 1   FLAGFVTT-MDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFG---LPSE 56

Query: 117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE-QGKPYDKPNIVTGANVQVCWEKFARYFE 175
            A GV T G SE+ +LA LA + + +++ K   G+  DK  IV      V  EK A Y +
Sbjct: 57  DADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116

Query: 176 VELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLT 229
           V+++ V ++E    M+P      +DE      N I V A  G+T TG  + ++ + DL  
Sbjct: 117 VKVRLVPVDEDG-RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175

Query: 230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV 289
           K       D  +HVDAA GGF+ PF  P    DF +  V SI+V  HKYGLV  G   V+
Sbjct: 176 KY------DLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVL 228

Query: 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
            R                                  +  +    R G +
Sbjct: 229 VR---------------------------------ALKLWATLRRFGRD 244

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score =  115 bits (289), Expect = 6e-29
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 22/226 (9%)

Query: 74  KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133
           K     I  N  D   +P T +++   V  + +L + P      A G    G +EA + A
Sbjct: 38  KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-----DAYGYIVSGGTEANIQA 92

Query: 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPV 193
             A K   +++++        PNI+   +    +EK A    +EL+   L+E  Y ++  
Sbjct: 93  VRAAKNLAREEKR-------TPNIIVPESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVK 144

Query: 194 KAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253
              +L+D+NTI +  I G+T  G+ +D++ L  +   +N        +HVDAA GGF+ P
Sbjct: 145 DVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKI-ALEN-----GIYLHVDAAFGGFVIP 198

Query: 254 FL---YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296
           FL   Y    +DF LP V+SI +  HK GL     G +++R+K  L
Sbjct: 199 FLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL 244

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score =  111 bits (279), Expect = 2e-27
 Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 25/228 (10%)

Query: 90  YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149
           +P T +L+   V M+  L + P      A G  T G +EA + A  A +           
Sbjct: 54  FPGTAKLEEEAVEMLGELLHLP-----DAYGYITSGGTEANIQAVRAAR---------NL 99

Query: 150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAA 208
              +KPNIV   +    ++K A    VEL+   L++ Y V   VKAVE L+D+NTI +  
Sbjct: 100 AKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD--VKAVEDLIDDNTIGIVG 157

Query: 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLV 268
           I G+T  G+ + +  L  +   +N        +HVDAA GGF+ PFL     +DF LP V
Sbjct: 158 IAGTTELGQVDPIPELSKI-ALEN-----GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211

Query: 269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL-GSDQPTFT 315
            SI +  HK GL     G +++R +  L D L     YL    Q T T
Sbjct: 212 DSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKKQATLT 258

Length = 371

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL 267
           A +G+T+TG  +++K + ++L K   +   D  IH DAA  G I PF+     + F    
Sbjct: 166 ANIGTTMTGAIDNIKEIQEILKKIGID---DYYIHADAALSGMILPFVNNPPPFSFADG- 221

Query: 268 VKSINVSGHKY 278
           + SI +SGHK+
Sbjct: 222 IDSIAISGHKF 232

Length = 380

>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTP---IHVDAASGGFIAPFLYPDLEWDFRLP 266
           +G+T+ G  +D+    DL+ K  EE G+      IH D A  G + PF+    +  F+ P
Sbjct: 236 IGTTVKGAVDDL----DLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKP 291

Query: 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
            + S++VSGHK+       G  + R +         HIN L S+
Sbjct: 292 -IGSVSVSGHKFVGCPMPCGVQITRME---------HINVLSSN 325

Length = 470

>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 169 KFARYFEVELKEV-KLEEGY--YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 225
           K AR + +E  +V  L  G   Y        +  D+  I    I G+T+ G  +D+    
Sbjct: 126 KAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNI-GTTVKGAVDDL---- 180

Query: 226 DLLTKKNEETGWDTP---IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY 278
           D + +  +E G+      IH D A  G + PF+    E  FR P + S++VSGHK+
Sbjct: 181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKP-IGSVSVSGHKF 235

Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
PLN02263	470	serine decarboxylase	100.0
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
KOG0629	510	consensus Glutamate decarboxylase and related prot	100.0
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.98
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.97
PLN02651	364	cysteine desulfurase	99.96
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.96
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.95
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.95
PRK05367	954	glycine dehydrogenase; Provisional	99.95
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.95
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.94
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.94
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.94
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.94
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.93
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.93
PRK02948	381	cysteine desulfurase; Provisional	99.93
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.93
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.93
PRK14012	404	cysteine desulfurase; Provisional	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.93
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.93
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.91
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.91
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.91
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.9
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.89
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.89
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.88
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.88
PRK12566	954	glycine dehydrogenase; Provisional	99.88
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.88
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.87
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.87
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.86
PLN00175	413	aminotransferase family protein; Provisional	99.86
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.86
PLN02724	805	Molybdenum cofactor sulfurase	99.86
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.85
PRK06108	382	aspartate aminotransferase; Provisional	99.85
PRK12414	384	putative aminotransferase; Provisional	99.85
PLN02656	409	tyrosine transaminase	99.85
PRK08361	391	aspartate aminotransferase; Provisional	99.84
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.84
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.84
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.84
PRK09082	386	methionine aminotransferase; Validated	99.84
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.84
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.84
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.84
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.84
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.84
PRK07337	388	aminotransferase; Validated	99.84
PRK08363	398	alanine aminotransferase; Validated	99.83
PRK08861	388	cystathionine gamma-synthase; Provisional	99.83
PRK07324	373	transaminase; Validated	99.83
PRK03080	378	phosphoserine aminotransferase; Provisional	99.83
PLN02721	353	threonine aldolase	99.83
PRK05764	393	aspartate aminotransferase; Provisional	99.83
PRK08960	387	hypothetical protein; Provisional	99.83
PRK06207	405	aspartate aminotransferase; Provisional	99.83
PRK08912	387	hypothetical protein; Provisional	99.83
PRK07681	399	aspartate aminotransferase; Provisional	99.82
PRK07682	378	hypothetical protein; Validated	99.82
PRK05942	394	aspartate aminotransferase; Provisional	99.82
PRK09028	394	cystathionine beta-lyase; Provisional	99.82
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.82
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.82
PLN02187	462	rooty/superroot1	99.82
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.82
PLN02271	586	serine hydroxymethyltransferase	99.82
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.82
PRK06290	410	aspartate aminotransferase; Provisional	99.82
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.82
PRK07777	387	aminotransferase; Validated	99.81
PRK05957	389	aspartate aminotransferase; Provisional	99.81
PRK07683	387	aminotransferase A; Validated	99.81
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.81
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.81
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.81
PRK08045	386	cystathionine gamma-synthase; Provisional	99.81
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.81
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.81
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.81
PLN02368	407	alanine transaminase	99.81
PRK07050	394	cystathionine beta-lyase; Provisional	99.8
PRK08776	405	cystathionine gamma-synthase; Provisional	99.8
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.8
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.8
PRK08574	385	cystathionine gamma-synthase; Provisional	99.8
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.8
PRK07179	407	hypothetical protein; Provisional	99.8
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.8
PRK08068	389	transaminase; Reviewed	99.8
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.8
PTZ00433	412	tyrosine aminotransferase; Provisional	99.8
PRK07550	386	hypothetical protein; Provisional	99.8
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.8
PLN02509	464	cystathionine beta-lyase	99.8
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.8
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK07811	388	cystathionine gamma-synthase; Provisional	99.8
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.8
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.8
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.8
PRK08249	398	cystathionine gamma-synthase; Provisional	99.8
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.8
PRK08114	395	cystathionine beta-lyase; Provisional	99.79
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.79
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.79
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.79
PRK08064	390	cystathionine beta-lyase; Provisional	99.79
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PRK06234	400	methionine gamma-lyase; Provisional	99.79
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.79
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.79
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.78
PTZ00377	481	alanine aminotransferase; Provisional	99.78
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.78
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.78
PRK06348	384	aspartate aminotransferase; Provisional	99.78
PRK07503	403	methionine gamma-lyase; Provisional	99.78
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.78
PRK06767	386	methionine gamma-lyase; Provisional	99.78
PRK07671	377	cystathionine beta-lyase; Provisional	99.78
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.78
PRK05939	397	hypothetical protein; Provisional	99.78
PRK09265	404	aminotransferase AlaT; Validated	99.78
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.78
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.78
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.77
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK05367	954	glycine dehydrogenase; Provisional	99.77
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.77
PRK06107	402	aspartate aminotransferase; Provisional	99.77
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.76
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.76
PRK06836	394	aspartate aminotransferase; Provisional	99.76
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.76
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.76
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.76
PRK09148	405	aminotransferase; Validated	99.76
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.76
PRK05967	395	cystathionine beta-lyase; Provisional	99.76
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.76
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.76
PRK09105	370	putative aminotransferase; Provisional	99.76
PRK05968	389	hypothetical protein; Provisional	99.75
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.75
PRK06855	433	aminotransferase; Validated	99.75
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.75
PRK06460	376	hypothetical protein; Provisional	99.75
PRK07568	397	aspartate aminotransferase; Provisional	99.75
PRK08636	403	aspartate aminotransferase; Provisional	99.75
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.75
PRK04311	464	selenocysteine synthase; Provisional	99.75
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.75
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.75
PLN02231	534	alanine transaminase	99.74
PLN02242	418	methionine gamma-lyase	99.74
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.74
PRK06225	380	aspartate aminotransferase; Provisional	99.74
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.74
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.74
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.74
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.74
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.73
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.73
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.73
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.73
PRK07582	366	cystathionine gamma-lyase; Validated	99.73
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.73
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.73
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.72
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.72
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.72
PRK15029	755	arginine decarboxylase; Provisional	99.72
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.72
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.71
PRK09275	527	aspartate aminotransferase; Provisional	99.71
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.71
PRK08175	395	aminotransferase; Validated	99.71
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.71
PLN02672	1082	methionine S-methyltransferase	99.71
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.71
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.71
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.71
PTZ00376	404	aspartate aminotransferase; Provisional	99.71
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.71
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.7
PRK13392	410	5-aminolevulinate synthase; Provisional	99.7
PRK03321	352	putative aminotransferase; Provisional	99.7
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.7
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.7
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.69
PRK05839	374	hypothetical protein; Provisional	99.69
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.69
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.69
PRK06434	384	cystathionine gamma-lyase; Validated	99.68
PRK13237	460	tyrosine phenol-lyase; Provisional	99.68
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.68
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.68
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.68
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.68
PRK10534	333	L-threonine aldolase; Provisional	99.67
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.67
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.67
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.67
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.67
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.67
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.67
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.66
PLN02397	423	aspartate transaminase	99.66
PRK07908	349	hypothetical protein; Provisional	99.66
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.66
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.66
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.66
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.66
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.66
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.66
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.65
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.65
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.65
PRK09064	407	5-aminolevulinate synthase; Validated	99.64
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.64
PRK07049	427	methionine gamma-lyase; Validated	99.64
PRK13393	406	5-aminolevulinate synthase; Provisional	99.63
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.63
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.62
PRK13578	720	ornithine decarboxylase; Provisional	99.62
PLN02483	489	serine palmitoyltransferase	99.61
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.61
PLN02822	481	serine palmitoyltransferase	99.61
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.61
PRK08637	388	hypothetical protein; Provisional	99.6
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.6
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.6
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.59
PRK12566	954	glycine dehydrogenase; Provisional	99.58
PRK08354	311	putative aminotransferase; Provisional	99.58
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.57
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.57
PRK15400	714	lysine decarboxylase CadA; Provisional	99.56
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.56
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.56
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.55
PRK12462	364	phosphoserine aminotransferase; Provisional	99.55
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.54
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.53
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.53
PLN02452	365	phosphoserine transaminase	99.53
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.5
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.5
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.48
PRK07505	402	hypothetical protein; Provisional	99.47
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.45
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.43
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.43
PRK02627	396	acetylornithine aminotransferase; Provisional	99.42
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.42
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.41
PLN02955	476	8-amino-7-oxononanoate synthase	99.41
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.41
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.4
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.39
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.39
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.36
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.36
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.33
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.29
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.29
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.29
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.28
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.25
PLN02624	474	ornithine-delta-aminotransferase	99.24
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.2
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.2
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.2
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.19
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.18
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.13
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.12
PRK04260	375	acetylornithine aminotransferase; Provisional	99.09
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.01
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.98
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	98.98
PRK12403	460	putative aminotransferase; Provisional	98.98
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	98.97
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.97
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.96
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.96
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.93
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.93
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.92
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.92
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	98.92
PRK06541	460	hypothetical protein; Provisional	98.91
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.9
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	98.9
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.89
PRK07482	461	hypothetical protein; Provisional	98.89
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.89
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.88
PLN00144	382	acetylornithine transaminase	98.87
PRK06105	460	aminotransferase; Provisional	98.87
PRK09792	421	4-aminobutyrate transaminase; Provisional	98.87
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.86
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.85
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.85
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	98.84
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.84
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.84
PRK05965	459	hypothetical protein; Provisional	98.83
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	98.81
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	98.81
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.81
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	98.8
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.78
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	98.78
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	98.77
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.77
PRK06062	451	hypothetical protein; Provisional	98.76
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	98.76
PRK07481	449	hypothetical protein; Provisional	98.74
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.73
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.7
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.7
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.69
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.68
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.68
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.67
PRK07036	466	hypothetical protein; Provisional	98.66
PRK07678	451	aminotransferase; Validated	98.66
PRK07046	453	aminotransferase; Validated	98.65
PRK07480	456	putative aminotransferase; Validated	98.65
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.64
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.64
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.64
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	98.61
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.61
PRK06917	447	hypothetical protein; Provisional	98.6
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.6
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.57
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.56
PRK07483	443	hypothetical protein; Provisional	98.55
KOG0630	838	consensus Predicted pyridoxal-dependent decarboxyl	98.54
PRK06148	1013	hypothetical protein; Provisional	98.51
PRK06149	972	hypothetical protein; Provisional	98.51
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.48
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.47
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.47
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.47
COG4100	416	Cystathionine beta-lyase family protein involved i	98.44
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.35
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.26
PRK08297	443	L-lysine aminotransferase; Provisional	98.26
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.2
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.2
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.18
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.13
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.85
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.8
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.72
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.64
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.63
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	97.54
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.08
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	96.52
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	95.6
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	82.42

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-54  Score=422.28  Aligned_cols=324  Identities=37%  Similarity=0.546  Sum_probs=291.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhhh-----cCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHH
Q 017569           30 FKMPDNSMPKEAAYQVINDELML-----DGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI  104 (369)
Q Consensus        30 ~~~p~~~~~~~~i~~~l~~~~~~-----~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~l  104 (369)
                      ..+|+.+.+.++++..+.....+     ++||+.+....+++.+++.+.+++..+++.|..+|+.+|++.++|+++..|+
T Consensus        31 ~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l  110 (460)
T COG0076          31 RMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNML  110 (460)
T ss_pred             ccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHH
Confidence            46788888999999988877542     5688887777778788889999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh-cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec
Q 017569          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE-QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL  183 (369)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~-~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~  183 (369)
                      ++++|.+.    ...|++|+||||||++|++++|+.+...... .+...+.|+||+|...|+|+.|+++++|++++.+|+
T Consensus       111 ~~l~~~~~----~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~  186 (460)
T COG0076         111 SDLLGAPE----EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPT  186 (460)
T ss_pred             HHHhCCCC----CCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEe
Confidence            99999974    3679999999999999999999998754432 333445679999999999999999999999999999


Q ss_pred             cCCccccCHHHHHHHHhhcCcE--EEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc
Q 017569          184 EEGYYVMNPVKAVELVDENTIC--VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (369)
Q Consensus       184 ~~~~~~~d~~~L~~~i~~~~~~--v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (369)
                      ++.+++||+++|+++|++++..  |+.+.|+|++|.+||+++|+++|+++      ++|+|||||+||+++||..+...+
T Consensus       187 ~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~------~i~lHVDAA~GG~~~pf~~~~~~~  260 (460)
T COG0076         187 VPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEY------GIWLHVDAAFGGFLLPFLEPDGRW  260 (460)
T ss_pred             ccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHc------CCcEEEEccccceeecccCccchh
Confidence            8745899999999999999887  99999999999999999999999999      999999999999999999988777


Q ss_pred             cccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCC-CCCCccccCCcchhHHHHHHHHHHHhcHhhH
Q 017569          262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS-DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI  340 (369)
Q Consensus       262 ~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~  340 (369)
                      ++.++++|||++|+|||+++|+|||++++||++.+.+.+.....|+++ ...++++.|||++..++++|+.|+.+|.+||
T Consensus       261 ~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy  340 (460)
T COG0076         261 DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGY  340 (460)
T ss_pred             hcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHH
Confidence            888999999999999999999999999999997666666666777775 5578899999999999999999999999999


Q ss_pred             HHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          341 PSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       341 ~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +++  +++++|++|++.|+++|.|+
T Consensus       341 ~~l~~~~~~~a~~la~~l~~~~~~e  365 (460)
T COG0076         341 RKLLDRTLELARYLAEELEKLGDFE  365 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            999  99999999999999999775

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=4.3e-53  Score=406.58  Aligned_cols=327  Identities=25%  Similarity=0.341  Sum_probs=267.0

Q ss_pred             hhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCC-h-HHHHHHHHHHhccCCCCCCCCcchHHHH
Q 017569           24 RAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM-E-PECDKLVMASINKNYVDMDEYPVTTELQ   97 (369)
Q Consensus        24 ~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~-~-~~v~~~~~~~~~~n~~~~~~~~~~~~le   97 (369)
                      ++.++. .+|+.|.+.+++++++.+.+.    .+.||+|  .+++++++ + ..+.+++..++|.|...|..+|...++|
T Consensus         5 ~~~~~~-~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~--~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E   81 (373)
T PF00282_consen    5 RARLDE-ELPEEGESLEEVLKDLREILAPGVTHWHHPRF--FGFVPGGPSPASILADLLASALNQNGFTWEASPAATEIE   81 (373)
T ss_dssp             GGGCHC-CHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTB--ESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHH
T ss_pred             hhcCcc-ccccCCCCHHHHHHHHHHHhhccCCCCCChhH--hhhccCCccHHHHHHHHHHhhhcccccccccccccccch
Confidence            445554 789999999999999988765    3667887  45555433 3 4578999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCC--CCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHHhhh
Q 017569           98 NRCVNMIAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYF  174 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~Vi~s~~~h~s~~~~~~~~  174 (369)
                      +++.+|+++++|.+..+.  ....|++|+|||+||++|++++|+++.++....|.. ..+++|++|+.+|+|+.++++++
T Consensus        82 ~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l  161 (373)
T PF00282_consen   82 REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL  161 (373)
T ss_dssp             HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT
T ss_pred             HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee
Confidence            999999999999994321  125799999999999999999999877665555544 45678999999999999999999


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG  248 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~  248 (369)
                      |++++.||++++ ++||+++|+++|.+.      |.+|+++.|+|.+|++||+++|+++|+++      ++|+|||||||
T Consensus       162 Glg~~~I~~~~~-~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~------~~wlHVDaA~g  234 (373)
T PF00282_consen  162 GLGVRKIPTDED-GRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKY------NIWLHVDAAYG  234 (373)
T ss_dssp             TSEEEEE-BBTT-SSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHC------T-EEEEEETTG
T ss_pred             eeEEEEecCCcc-hhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccc------ceeeeeccccc
Confidence            999999999985 899999999998752      56899999999999999999999999999      99999999999


Q ss_pred             cccccccCCCccc-cccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC---------CCccccC
Q 017569          249 GFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---------PTFTLNF  318 (369)
Q Consensus       249 ~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~---------~~~~l~~  318 (369)
                      |..+  +.|..+. .+.++++|||++|+|||+++|++||++++|++..+...+...+.|+....         .+++++|
T Consensus       235 g~~~--~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~  312 (373)
T PF00282_consen  235 GSAL--LSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQG  312 (373)
T ss_dssp             GGGG--GHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSS
T ss_pred             cccc--ccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccc
Confidence            9554  4555443 44488999999999999999999999999998877666667788988432         3467899


Q ss_pred             CcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          319 SKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       319 tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      || ...++++|++|+.+|.+|++++  +++++|++|+++|++.+.|+
T Consensus       313 SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~e  358 (373)
T PF00282_consen  313 SR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFE  358 (373)
T ss_dssp             SG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             cc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            99 5459999999999999999999  99999999999999998764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=1.2e-51  Score=402.24  Aligned_cols=344  Identities=60%  Similarity=1.066  Sum_probs=293.1

Q ss_pred             cccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhh--cCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchH
Q 017569           17 TFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML--DGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        17 ~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~--~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      .|+++-....+++..+|+.|.+.+++++.+...+.+  ..||++  ++|+++++.|++.+++..+++.|.++|..++...
T Consensus         2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~iyld~~a~~~~--~~~~tt~~~p~~~~~~~~~l~~~~~np~s~~~~~   79 (431)
T TIGR01788         2 AYGSRAVSTGIPKYRMPEEEMPPDAAYQLIHDELSLDGNPRLNL--ATFVTTWMEPEARKLMDETINKNMIDKDEYPQTA   79 (431)
T ss_pred             CccccccccCCCcccCCCCCCCHHHHHHHHHHHhhhcCCcceee--eeeeCCCCCHHHHHHHHHHHhcCCCCcccCccHH
Confidence            455555666778889999999999999999887665  446655  7899999889899999999998888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh
Q 017569           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF  174 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~  174 (369)
                      ++|+++++|+++++|+++. +....+++|+||||||++++.+++..+..+.+..|....++.|++|+.+|+|+.++++.+
T Consensus        80 ~le~~~~~~la~llg~~~~-~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l  158 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAK-DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF  158 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCC-CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc
Confidence            9999999999999999831 012557789999999999999987654332222232223468999999999999999999


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |++++.||++++++.+|+++|+++|+++|.+|+++++||.+|.+||+++|+++|+++++.++.++|+|||+||+++.+||
T Consensus       159 g~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~  238 (431)
T TIGR01788       159 DVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPF  238 (431)
T ss_pred             CceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHH
Confidence            99999999987446999999999999999999999999999999999999999999855444479999999999999888


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR  334 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~  334 (369)
                      ..++.+.++...++||+++|+|||+++|+|+|++++|+++.+...+...++|+++...+.+++++|++..+++.|+.|+.
T Consensus       239 ~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~  318 (431)
T TIGR01788       239 VYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLR  318 (431)
T ss_pred             hCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHH
Confidence            88877888888899999999999999999999999998755545555677898875556788999998778999999999


Q ss_pred             hcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          335 LGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       335 lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +|.+|++++  +++++|++|+++|++.+.|+
T Consensus       319 lG~~G~~~i~~~~~~la~~l~~~L~~~~~~e  349 (431)
T TIGR01788       319 LGREGYRKIMQNSLDVARYLAEEIAKLGPFE  349 (431)
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            999999998  99999999999999998765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=6.8e-52  Score=411.21  Aligned_cols=328  Identities=18%  Similarity=0.209  Sum_probs=277.4

Q ss_pred             hhHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCC--hHHHHHHHHHHhccCCCCCCCCcchH
Q 017569           21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        21 ~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~--~~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      .+++..++. ++|+.|.+.+++++++.+.+.    ++.||+|  ++|++++.  +..+.|++..++|.+.+.|..+|...
T Consensus        93 ~~l~~~l~~-~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f--~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t  169 (539)
T PLN02590         93 GYLRDMLPD-SAPERPESLKELLDDVSKKIMPGITHWQSPSY--FAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAAT  169 (539)
T ss_pred             HHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCcCCCCCe--eEeccCCCcHHHHHHHHHHHhcccccCCcccCchhH
Confidence            456677775 799999999999999988664    4789987  56666544  35589999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCC--CCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHH
Q 017569           95 ELQNRCVNMIAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFA  171 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~Vi~s~~~h~s~~~~~  171 (369)
                      ++|+++.+|+++++|++..+.  ....|++++|||+||+.+++++|+++.++.   |.. ..+.+|++|+.+|+|+.|++
T Consensus       170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~---g~~~~~~~vvy~S~~aH~Sv~KAa  246 (539)
T PLN02590        170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKV---GKTLLPQLVVYGSDQTHSSFRKAC  246 (539)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhh---cccCCCCEEEEecCCchHHHHHHH
Confidence            999999999999999986321  124699999999999999999998654322   221 22348889999999999999


Q ss_pred             hhhcce---eEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceE
Q 017569          172 RYFEVE---LKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI  241 (369)
Q Consensus       172 ~~~G~~---v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l  241 (369)
                      +++|+.   ++.||++. ++++||+++|+++|.+      .|.+|+++.|+|.+|++||+++|+++|+++      ++|+
T Consensus       247 ~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~------g~Wl  320 (539)
T PLN02590        247 LIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY------GIWL  320 (539)
T ss_pred             HHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh------CCeE
Confidence            999994   89999985 3589999999999975      378999999999999999999999999999      9999


Q ss_pred             EeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCC---------C
Q 017569          242 HVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD---------Q  311 (369)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~---------~  311 (369)
                      |||||||++++  ++|+.+..+. ++.+||+++|+|||+++|++||++++|++..+..++...++|+...         .
T Consensus       321 HVDaA~GG~al--~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~  398 (539)
T PLN02590        321 HVDAAYAGNAC--ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNY  398 (539)
T ss_pred             EEecchhhhhh--cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCc
Confidence            99999999886  5666555444 8899999999999999999999999999876656666677787431         2


Q ss_pred             CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          312 PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       312 ~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      .++++++||+++ ++++|++|+.+|.+||+++  +++++|+||+++|++.+.|+
T Consensus       399 ~d~~i~lsRr~r-aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fe  451 (539)
T PLN02590        399 KDWQISLSRRFR-SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFE  451 (539)
T ss_pred             cccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            356789999986 9999999999999999999  99999999999999988765

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=5.7e-49  Score=389.99  Aligned_cols=329  Identities=17%  Similarity=0.218  Sum_probs=270.6

Q ss_pred             hhHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCC--hHHHHHHHHHHhccCCCCCCCCcchH
Q 017569           21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        21 ~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~--~~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      ..++..++. .+|+.|.+.+++++++.+.+.    ++.||+|  .++.++++  +..+.|++..++|++...|..+|...
T Consensus        45 ~~l~~~~~~-~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f--~~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~  121 (490)
T PLN02880         45 GYLRELLPD-SAPNQPETLDQVLDDVQAKILPGVTHWQSPNY--FAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAAT  121 (490)
T ss_pred             HHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeccCCCcHHHHHHHHHHHhhccCCcccccCcccH
Confidence            445666765 689999999999999987654    3678987  45555433  35578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCC--CCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh
Q 017569           95 ELQNRCVNMIAHLFNTPVADD--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR  172 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~--~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~  172 (369)
                      ++|+++.+|+++++|++..+.  ....|++|+|||+||++|++++|+....+....+  ..+.+|++|+.+|+|+.|+++
T Consensus       122 ~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~--~~~~vv~~S~~aH~Sv~Kaa~  199 (490)
T PLN02880        122 ELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNA--LEKLVVYASDQTHSALQKACQ  199 (490)
T ss_pred             HHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccc--cCCeEEEEcCCchHHHHHHHH
Confidence            999999999999999986320  0135899999999999999999987543221111  124578899999999999999


Q ss_pred             hhcce---eEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEE
Q 017569          173 YFEVE---LKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (369)
Q Consensus       173 ~~G~~---v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~  242 (369)
                      ++|++   ++.||+++ ++++||+++|+++|++      .|.+|+++.|+|.+|.+||+++|+++|+++      ++|+|
T Consensus       200 ~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~------~iwlH  273 (490)
T PLN02880        200 IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSN------GMWFH  273 (490)
T ss_pred             HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHc------CCEEE
Confidence            99996   89999985 4589999999999975      278999999999999999999999999999      99999


Q ss_pred             eecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCC---------CC
Q 017569          243 VDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD---------QP  312 (369)
Q Consensus       243 vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~---------~~  312 (369)
                      ||||||++++  +.++.+..+. ++++||+++|+|||+++|++||++++|++..+...+...++|+...         ..
T Consensus       274 VDaA~gg~~~--~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  351 (490)
T PLN02880        274 VDAAYAGSAC--ICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYK  351 (490)
T ss_pred             EehhhHHHHH--hCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChh
Confidence            9999999876  4555555555 6789999999999999999999999998665545555566676432         12


Q ss_pred             CccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          313 TFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       313 ~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +++++++|++. ++++|++|+.+|.+|++++  +++++|+|+++.|++.+.|+
T Consensus       352 ~~~i~~~rr~~-alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~e  403 (490)
T PLN02880        352 DWQIPLGRRFR-SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFE  403 (490)
T ss_pred             ccCcCCCCccc-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            35678899886 8999999999999999999  99999999999999876554

>PLN02263 serine decarboxylase

Probab=100.00  E-value=3.9e-47  Score=368.51  Aligned_cols=293  Identities=18%  Similarity=0.175  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHhhhhcCCCCccccccccC---CChHHHHHHHHHHhccCCCCCC-CCc---chHHHHHHHHHHHHHHhCCC
Q 017569           39 KEAAYQVINDELMLDGNPRLNLASFVTT---WMEPECDKLVMASINKNYVDMD-EYP---VTTELQNRCVNMIAHLFNTP  111 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~p~~~l~~~~~~---~~~~~v~~~~~~~~~~n~~~~~-~~~---~~~~le~~~~~~la~l~g~~  111 (369)
                      .+++++.+.+.+... ..  ++.+| |.   +....+.+.+...+| |.+++. .++   ...++|+++.+|+++++|.+
T Consensus        75 ~~~~l~~~~~~~~~~-~~--~~~gY-p~n~~~d~s~l~~~l~~~~n-N~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p  149 (470)
T PLN02263         75 MASVLARYRKTLVER-TK--HHLGY-PYNLDFDYGALGQLQHFSIN-NLGDPFIESNYGVHSRQFEVGVLDWFARLWEIE  149 (470)
T ss_pred             HHHHHHHHHHHHHhc-cc--ceeCC-CCcccCChhhHHHHHHhhcc-CCCCccccCCcchhHHHHHHHHHHHHHHHhCCC
Confidence            356666666554321 11  13455 32   223556777766554 444443 344   68999999999999999998


Q ss_pred             CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccC
Q 017569          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMN  191 (369)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d  191 (369)
                      ++   ..+|++|+||||||++|++++|+.++           +.++++|+.+|+|+.|+++++|++++.||++++ ++||
T Consensus       150 ~~---~~~G~vtsGGTEaNL~Al~aARe~~~-----------~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~-g~mD  214 (470)
T PLN02263        150 KN---EYWGYITNCGTEGNLHGILVGREVFP-----------DGILYASRESHYSVFKAARMYRMECVKVDTLVS-GEID  214 (470)
T ss_pred             CC---CCeEEEeCcHHHHHHHHHHHHHhhcC-----------CcEEEEcCCccHHHHHHHHhcCCcceEeccCCC-CcCc
Confidence            52   36799999999999999999998531           358999999999999999999999999999874 8999


Q ss_pred             HHHHHHHHhhc---CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCc-----eEEeecccccccccccCCCccccc
Q 017569          192 PVKAVELVDEN---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT-----PIHVDAASGGFIAPFLYPDLEWDF  263 (369)
Q Consensus       192 ~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~-----~l~vD~a~~~~~~~~~~~~~~~~~  263 (369)
                      +++|+++|.++   |.+|+++.|||++|++||+++|+++|+++      ++     |+||||||||+++||......+++
T Consensus       215 ~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~------g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df  288 (470)
T PLN02263        215 CADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEEC------GFSQDRFYIHCDGALFGLMMPFVKRAPKVTF  288 (470)
T ss_pred             HHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHc------CCccCCeeEEEeccchhhHhhhcccccccCC
Confidence            99999999764   67888999999999999999999999999      75     999999999999988775445666


Q ss_pred             cCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH
Q 017569          264 RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF  343 (369)
Q Consensus       264 ~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~  343 (369)
                      .. .+|||++|+|||+++|++||++++|++. + ..+...+.|+...  +.++.|||++..++++|++|+.+|.+|++++
T Consensus       289 ~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~--d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~  363 (470)
T PLN02263        289 KK-PIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYRGFQKE  363 (470)
T ss_pred             Cc-CccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCC--CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHH
Confidence            54 4999999999999999999999999643 2 4555678898764  4578899999889999999999999999999


Q ss_pred             --HhhHHHHHHHHHHHhcCCC
Q 017569          344 --CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       344 --~~~~~a~~l~~~L~~~g~~  362 (369)
                        +|+++|+|+.++|++.|+.
T Consensus       364 i~~~~~~A~~l~~~l~~~g~~  384 (470)
T PLN02263        364 VQKCLRNAHYLKDRLREAGIS  384 (470)
T ss_pred             HHHHHHHHHHHHHHHHhCCCe
Confidence              9999999999999998763

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-46  Score=350.14  Aligned_cols=343  Identities=48%  Similarity=0.703  Sum_probs=312.9

Q ss_pred             cccCCCcccccccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhcc-C
Q 017569            5 TTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINK-N   83 (369)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~-n   83 (369)
                      .+|..+-++..+.|.++.-++.++..++|++|.+.+++++.++++.+++++|+.+..++...+.++...+++.++++. |
T Consensus        29 ~~~~~~~k~~~~~~~~~~~~~~~~~~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l~~~~~~k~N  108 (491)
T KOG1383|consen   29 EKELNKVKDQLSTFMSRYDRQKMYFFTLPSKGLPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKLIMEAYNKFN  108 (491)
T ss_pred             HHHHhhhhhhhhhhhhhhhhccceeecCCCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhHHHHHHhhcC
Confidence            445556778889999999999999889999999999999999999999999998888888888888889999999988 9


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 017569           84 YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (369)
Q Consensus        84 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~  163 (369)
                      +.+++.+|+..++|+++.++++.+++.+.+    ..|..|+||||+++++....++.    |... +++..|.++.+...
T Consensus       109 ~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~----~~g~~t~G~Ses~l~~~k~~~~~----r~~~-k~I~~p~iv~~~~v  179 (491)
T KOG1383|consen  109 PLHPDEFPVVRKLEAECVNMIANLFNAPSD----SCGCGTVGGSESGLAAKKSYRNR----RKAQ-KGIDKPNIVTPQNV  179 (491)
T ss_pred             ccCccccchhHHHHHHHHHHHHHHhcCCcc----ccCccccccchHHHHHHHHHHHH----HHhc-cCCCCccccchHHH
Confidence            999999999999999999999999999952    57999999999976665555543    3332 45678899999999


Q ss_pred             cchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH-hhhccCCCceEE
Q 017569          164 QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIH  242 (369)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~-~~~~~~~~~~l~  242 (369)
                      |.+++++++.+++.++.||++++.+++|+.++.+.++++|++++...|++|+|.++|+++|.+++-+ +      ++++|
T Consensus       180 ~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w------~ipiH  253 (491)
T KOG1383|consen  180 HAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIW------DIPIH  253 (491)
T ss_pred             HHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHh------CCcee
Confidence            9999999999999999999997679999999999999999999999999999999999999999999 9      99999


Q ss_pred             eeccccccccc-ccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcc
Q 017569          243 VDAASGGFIAP-FLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       243 vD~a~~~~~~~-~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~  321 (369)
                      ||+|.|+++.| +..+..+++|.++++-|+++|+||++++|.|+|++++|+++++...+....+|+|+.+.++|++|||+
T Consensus       254 vDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~  333 (491)
T KOG1383|consen  254 VDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRP  333 (491)
T ss_pred             ecccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCc
Confidence            99999999998 55566689999999999999999999999999999999999998888899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      +..++++|++|..+|.+||.+.  +|.+++++|++.+++.+-|
T Consensus       334 g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i  376 (491)
T KOG1383|consen  334 GSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGI  376 (491)
T ss_pred             ccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999998  9999999999999986554

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=7.2e-46  Score=368.65  Aligned_cols=324  Identities=18%  Similarity=0.252  Sum_probs=258.4

Q ss_pred             hCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCChH---HHHHHHHHHhccCCCCCCCCcchHHHHH
Q 017569           26 AIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWMEP---ECDKLVMASINKNYVDMDEYPVTTELQN   98 (369)
Q Consensus        26 ~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~~~---~v~~~~~~~~~~n~~~~~~~~~~~~le~   98 (369)
                      .++...+|+.|.+.+++++++.+.+.    ++.||+|  .++.+...++   .+.+ +..++|.|...|..+|..+++|+
T Consensus        56 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f--~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~  132 (522)
T TIGR03799        56 DFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSF--IGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLER  132 (522)
T ss_pred             cccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCe--EEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHH
Confidence            34455799999999999998766553    4789987  4555543222   2456 56789999999999999999999


Q ss_pred             HHHHHHHHHhCCCCC--------CCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH------HhcCCC-------CCCCeE
Q 017569           99 RCVNMIAHLFNTPVA--------DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR------KEQGKP-------YDKPNI  157 (369)
Q Consensus        99 ~~~~~la~l~g~~~~--------~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~------~~~g~~-------~~~~~V  157 (369)
                      .+.+|++++++..++        ......|++|+|||+||++|++++|+......      ...|..       ..+.+|
T Consensus       133 ~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v  212 (522)
T TIGR03799       133 QVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAI  212 (522)
T ss_pred             HHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEE
Confidence            999999999863211        01235699999999999999999998643211      001111       134689


Q ss_pred             EecCCCcchHHHHHhhhcc---eeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          158 VTGANVQVCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       158 i~s~~~h~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                      ++|+.+|+|+.++++.+|+   .++.||++++ ++||+++|+++|++      ++.+|+.++|+|.+|.+||+++|+++|
T Consensus       213 ~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~-g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~  291 (522)
T TIGR03799       213 LVSERGHYSLGKAADVLGIGRDNLIAIKTDAN-NRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIA  291 (522)
T ss_pred             EECCCchHHHHHHHHHcCCCcccEEEEEeCCC-CcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHH
Confidence            9999999999999999999   6999999875 89999999999973      356677889999999999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCcc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL  307 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~  307 (369)
                      +++      ++|+|||||||++..  +.++.+..+. ++++||+++|+|||+++|.|||++++|++..+ ..+...+.|+
T Consensus       292 ~~~------g~~lHVDaA~gg~~~--~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl  362 (522)
T TIGR03799       292 QEL------GCHFHVDAAWGGATL--LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYI  362 (522)
T ss_pred             HHc------CCeEEEEchhhhHHH--hCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchh
Confidence            999      999999999998765  4454444555 56899999999999999999999999987553 4455566776


Q ss_pred             CC----CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          308 GS----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       308 ~~----~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ..    +...++++|||++. ++++|++|+.+|.+|++++  +++++|+||+++|++.+-|+
T Consensus       363 ~~~~~~d~~~~~legsR~~~-al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~e  423 (522)
T TIGR03799       363 LRKGSKDLGSHTLEGSRPGM-AMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFE  423 (522)
T ss_pred             cCCCCCccccceeecCcchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence            21    12346789999987 6899999999999999999  99999999999999887664

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=2.7e-45  Score=367.31  Aligned_cols=321  Identities=16%  Similarity=0.164  Sum_probs=253.4

Q ss_pred             CCCCCCCCHHHHHHHHHHhhh----hcCCC-CccccccccCCCh-HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHH
Q 017569           31 KMPDNSMPKEAAYQVINDELM----LDGNP-RLNLASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI  104 (369)
Q Consensus        31 ~~p~~~~~~~~i~~~l~~~~~----~~~~p-~~~l~~~~~~~~~-~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~l  104 (369)
                      .+.+...+.+++++++.+.+.    .+.|| +| ++++.+.+.. ..+.+++..++|.|...|+.+|.++++|+++.+|+
T Consensus        54 ~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry-~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~l  132 (608)
T TIGR03811        54 SFTKTVNNMKDVLDELSSRLRTESVPWHSAGRY-WGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEF  132 (608)
T ss_pred             ccccCccCHHHHHHHHHHHHhcCCCCCCCccce-EEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHH
Confidence            345555678899999988664    25678 77 4454444443 45789999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH----HHHH----------------------------------
Q 017569          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ----QKRK----------------------------------  146 (369)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~----~~~~----------------------------------  146 (369)
                      ++++|++.     .+|++|+|||+||+.+++++|+...    .+..                                  
T Consensus       133 a~l~G~~~-----~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~  207 (608)
T TIGR03811       133 ATLMGYKN-----GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDE  207 (608)
T ss_pred             HHHhCCCC-----CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhh
Confidence            99999985     5799999999999999999998531    0000                                  


Q ss_pred             ------hcCCCCCCC-eEEecCCCcchHHHHHhhhcce---eEEEeccCCccccCHHHHHHHHhhc------CcEEEEee
Q 017569          147 ------EQGKPYDKP-NIVTGANVQVCWEKFARYFEVE---LKEVKLEEGYYVMNPVKAVELVDEN------TICVAAIL  210 (369)
Q Consensus       147 ------~~g~~~~~~-~Vi~s~~~h~s~~~~~~~~G~~---v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~  210 (369)
                            ..|....+. ++++|...|+|+.|++.++|++   ++.||+|++ ++||+++|+++|++.      +.+|+.+.
T Consensus       208 ~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~-~rmd~~~L~~~I~~~~~~g~p~~~VVata  286 (608)
T TIGR03811       208 IKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSN-YRMDINELEKIIRKLAAEKTPILGVVGVV  286 (608)
T ss_pred             hhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCC-CcCCHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence                  001111122 7899999999999999999996   899999875 899999999999752      56799999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccC------------------------------CCcc
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY------------------------------PDLE  260 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~------------------------------~~~~  260 (369)
                      |||.+|++||+++|+++|++..+ ++..+|+||||||||++...+.                              ++.+
T Consensus       287 GTT~~GaiDpl~eI~~l~~~~~~-~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~  365 (608)
T TIGR03811       287 GSTEEGAVDGIDKIVALRNKLMK-EGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVY  365 (608)
T ss_pred             CCcCCcccCCHHHHHHHHHHHHH-cCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHH
Confidence            99999999999999999965321 2223479999999997522111                              1222


Q ss_pred             cccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-------CCccccCCcchhHHHHHHHHH
Q 017569          261 WDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------PTFTLNFSKGSSQIIAQYYQF  332 (369)
Q Consensus       261 ~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-------~~~~l~~tr~~~~~l~~~~~l  332 (369)
                      ..++ ++++|||++|+|||++.|++||++++|++.. ...+...++|+....       ..++++|||++..++++|+++
T Consensus       366 ~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~-~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~l  444 (608)
T TIGR03811       366 NAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM-RDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAH  444 (608)
T ss_pred             HHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH-HHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHH
Confidence            2344 7899999999999999999999999999853 345556778874311       235788999988899999999


Q ss_pred             HHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          333 IRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       333 ~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.+  |.+||.++  +++++|++++++|++++
T Consensus       445 r~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~  476 (608)
T TIGR03811       445 KVLPLNVTGYGKLIGASIEGAHRFYDFLNNLE  476 (608)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998  99999999  99999999999999965

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=6.7e-45  Score=348.13  Aligned_cols=265  Identities=18%  Similarity=0.183  Sum_probs=227.1

Q ss_pred             HHHHHHHHhccCCCCCCCCc----chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           72 CDKLVMASINKNYVDMDEYP----VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        72 v~~~~~~~~~~n~~~~~~~~----~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      ..+.+..++.+|.++|....    ...++|+++++|+++++|++++   ..+|++|+||||||+++++++|+..      
T Consensus        39 ~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~---~~~G~fTsGGTEaNl~al~~ar~~~------  109 (374)
T PLN03032         39 ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKD---EYWGYITTCGTEGNLHGILVGREVF------  109 (374)
T ss_pred             HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCc---cCCEEEeCchHHHHHHHHHHHHHhC------
Confidence            45556667766666664432    6899999999999999999863   3569999999999999999987641      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCCCHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLL  224 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~l~~I  224 (369)
                           .+..|++|..+|+|+.++++++|++++.||++++ ++||+++|+++|++   +|.+|+++++||++|++||+++|
T Consensus       110 -----~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~-g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI  183 (374)
T PLN03032        110 -----PDGILYASRESHYSVFKAARMYRMEAVKVPTLPS-GEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRI  183 (374)
T ss_pred             -----CCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCC-CcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHH
Confidence                 1248999999999999999999999999999875 89999999999987   57899999999999999999999


Q ss_pred             HHHHHHhhhccCCC-----ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          225 HDLLTKKNEETGWD-----TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       225 ~~l~~~~~~~~~~~-----~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      +++|+++      +     +|+|||||++++..||......+++. .++||+++|+|||+++|.|+|++++|++. + ..
T Consensus       184 ~~i~~~~------g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~  254 (374)
T PLN03032        184 LRILKEL------GYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KA  254 (374)
T ss_pred             HHHHHHh------CCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchh-h-Hh
Confidence            9999998      6     59999999999988876544445554 47999999999999999999999999743 3 34


Q ss_pred             cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       300 ~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      +...++|+...  +.++.|||++..++++|++|+.+|.+|++++  +|+++|+||+++|++.|+.
T Consensus       255 ~~~~~~Yl~~~--d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~  317 (374)
T PLN03032        255 LSQNVEYLNSR--DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLT  317 (374)
T ss_pred             hccCCcccCCC--CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            55678888764  5688999999889999999999999999999  9999999999999998664

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=5e-44  Score=344.28  Aligned_cols=282  Identities=20%  Similarity=0.268  Sum_probs=232.6

Q ss_pred             cCCCCccccccc-cCCChHHHHHHHHHHhccCCCCCCCCc----chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch
Q 017569           53 DGNPRLNLASFV-TTWMEPECDKLVMASINKNYVDMDEYP----VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        53 ~~~p~~~l~~~~-~~~~~~~v~~~~~~~~~~n~~~~~~~~----~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (369)
                      ..||+++++.-. .......+.+++.... +|.++|...+    ...++|+++++|+++++|++++   ..+|++|+|||
T Consensus        19 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~-~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~---~~~G~~TsGgT   94 (380)
T PRK02769         19 RHNQYFNVGYPEAADFDYSALKRFFSFSI-NNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFN---ESWGYITNGGT   94 (380)
T ss_pred             HHhhhcccCCCchhhcCHHHHHHHHHhhh-ccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCC---CCCEEEecChH
Confidence            457776433211 2232345555554444 4566665544    4789999999999999999853   24799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc---Cc
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TI  204 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---~~  204 (369)
                      |||+.+++++|+..           .+++|++|+.+|+|+.++++.+|++.+.||+++ ++++|+++|+++|+++   |+
T Consensus        95 ean~~a~~~ar~~~-----------~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~-~g~id~~~L~~~i~~~~~~t~  162 (380)
T PRK02769         95 EGNLYGCYLARELF-----------PDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP-NGEIDYDDLISKIKENKNQPP  162 (380)
T ss_pred             HHHHHHHHHHHHhC-----------CCcEEEeCCCceehHHHHHHHcCCCCceeccCC-CCcCcHHHHHHHHHhCCCCcE
Confidence            99999999887631           135899999999999999999999999999986 4899999999999886   99


Q ss_pred             EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC---ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC
Q 017569          205 CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD---TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~---~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~  281 (369)
                      +|+++++||++|.+||+++|+++|+++      +   +|+|||||++++..||.....++++.. ++||+++|+|||+++
T Consensus       163 lvv~t~gtt~tG~idpi~~I~~i~~~~------g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~  235 (380)
T PRK02769        163 IIFANIGTTMTGAIDNIKEIQEILKKI------GIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGS  235 (380)
T ss_pred             EEEEEeCCCCCcccCCHHHHHHHHHHh------CCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCC
Confidence            999999999999999999999999999      7   799999999999988877655566655 899999999999999


Q ss_pred             CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |.|+|++++|++. + ..+....+|+..  .+.++.|||++..++++|++|+.+|.+|++++  +++++|+|+.++|++.
T Consensus       236 P~g~G~l~~r~~~-~-~~~~~~~~yl~~--~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~  311 (380)
T PRK02769        236 PMPCGIVLAKKKY-V-ERISVDVDYIGS--RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN  311 (380)
T ss_pred             CCCcEEEEEehhh-h-hhcccCccccCC--CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999753 2 233445677765  34578899999889999999999999999998  9999999999999987


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |+
T Consensus       312 g~  313 (380)
T PRK02769        312 GI  313 (380)
T ss_pred             CC
Confidence            65

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-41  Score=311.14  Aligned_cols=322  Identities=17%  Similarity=0.150  Sum_probs=271.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCccccccccCCCh-HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHH
Q 017569           27 IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVN  102 (369)
Q Consensus        27 ~~~~~~p~~~~~~~~i~~~l~~~~~~---~~~p~~~l~~~~~~~~~-~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~  102 (369)
                      +-..++|+.+.+.+++++..++.+..   .+||+|. .....+..+ .-+.+.+.+.+|.|.+.|+..|...-+|.++..
T Consensus        70 l~nlel~~~~esl~qil~~cr~tl~y~vKTgHprff-NQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~  148 (510)
T KOG0629|consen   70 LFNLELRDQPESLAQILEDCRDTLKYSVKTGHPRFF-NQLSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLA  148 (510)
T ss_pred             HhCcccCCChhhHHHHHHHHHHHHHhhhccCCCcch-hhhccCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHH
Confidence            34468999999999999999988863   7899972 223333322 457899999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcchHHHHHhhhcce---e
Q 017569          103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARYFEVE---L  178 (369)
Q Consensus       103 ~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~Vi~s~~~h~s~~~~~~~~G~~---v  178 (369)
                      .+.++.|++..    ..+++++||+-+|++++.++|.+..++.+..|...-++ .+++|+.+|||+.+++.++|++   +
T Consensus       149 km~~ivGw~~~----~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c  224 (510)
T KOG0629|consen  149 KMREIVGWEEG----GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHC  224 (510)
T ss_pred             HHHHHhCCCCC----CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCcee
Confidence            99999999973    35999999999999999999887544433344333234 6678999999999999999965   8


Q ss_pred             EEEeccCCccccCHHHHHHHHhh---c---CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          179 KEVKLEEGYYVMNPVKAVELVDE---N---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~---~---~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      +.|++++. |+|++++||+.|-+   +   |.+|.+|+|||..|++||++.|+++|++|      ++|+|||||+||+.+
T Consensus       225 ~~v~t~e~-Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~------~lWmHvDAAwGGglL  297 (510)
T KOG0629|consen  225 IKVKTDER-GKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH------KLWMHVDAAWGGGLL  297 (510)
T ss_pred             EEeccccc-CccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc------CEEEEeecccccccc
Confidence            99999985 99999999999864   3   78999999999999999999999999999      999999999999887


Q ss_pred             cccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC---------CCccccCCcch
Q 017569          253 PFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---------PTFTLNFSKGS  322 (369)
Q Consensus       253 ~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~---------~~~~l~~tr~~  322 (369)
                        ++.++++.+. ++++||+++++||++++|..||.++.|...++..+.+..+.|+...+         .+..++|.|..
T Consensus       298 --mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~  375 (510)
T KOG0629|consen  298 --MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV  375 (510)
T ss_pred             --cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence              7777788887 89999999999999999999999999988777666666666664322         24467899888


Q ss_pred             hHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          323 SQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       323 ~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      . ++++|..+++-|.+|+++.  +|+++|+||..+|++.+-|+
T Consensus       376 D-~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~  417 (510)
T KOG0629|consen  376 D-VFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFE  417 (510)
T ss_pred             c-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccce
Confidence            5 9999999999999999988  99999999999999988765

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-40  Score=309.34  Aligned_cols=329  Identities=18%  Similarity=0.222  Sum_probs=281.7

Q ss_pred             hHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCC--ChHHHHHHHHHHhccCCCCCCCCcchHH
Q 017569           22 YVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTW--MEPECDKLVMASINKNYVDMDEYPVTTE   95 (369)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~--~~~~v~~~~~~~~~~n~~~~~~~~~~~~   95 (369)
                      +++..+|. +.|+.+.+.++|+.+++++++    +|.||.|  ..|.|+.  .+..+.|++...++.-.++|..+|..++
T Consensus        37 Yl~~llP~-~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~f--hAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TE  113 (511)
T KOG0628|consen   37 YLRDLLPS-KAPEKPESWEDILGDLEKIIMPGITHWQHPHF--HAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTE  113 (511)
T ss_pred             hhhhhCCC-CCCCChhhHHHHHHHHHHHccCCCcccCCCce--eeEccCccchHHHHHHHHhcccccccceeecCcchHH
Confidence            35677776 689999999999999999987    6899987  4666653  3466889999999888899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC----CCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC------CCCCeEEecCCCcc
Q 017569           96 LQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP------YDKPNIVTGANVQV  165 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~------~~~~~Vi~s~~~h~  165 (369)
                      ||.-+++|++++++.|..+    .....|++-.+++|+++.++.++|...-++.+..-+.      ..+-++|+|+.+|.
T Consensus       114 LE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahs  193 (511)
T KOG0628|consen  114 LEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHS  193 (511)
T ss_pred             HHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccc
Confidence            9999999999999998654    2245688888999999999999988654432211100      12347899999999


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCc
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~  239 (369)
                      |+++++.+.|++.+.++.++ ++.|+.+.|+++|.++      |.+|++|.|||.+.++|++++|..+|+++      ++
T Consensus       194 sveka~~i~~VklR~l~td~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~------gl  266 (511)
T KOG0628|consen  194 SVEKACLIAGVKLRALPTDE-NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREE------GL  266 (511)
T ss_pred             hHHHhHhhcceeEEEeeccc-CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhc------CE
Confidence            99999999999999999998 5999999999999874      78999999999999999999999999999      99


Q ss_pred             eEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-------
Q 017569          240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------  311 (369)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-------  311 (369)
                      |+|||+||+|.++  .||+.+...+ ++.+||+.+++|||+++-..|+.+++|++..+..++..++-|+.+..       
T Consensus       267 WLHVDAAYAGsa~--iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dy  344 (511)
T KOG0628|consen  267 WLHVDAAYAGSAF--ICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDY  344 (511)
T ss_pred             EEEeehhhccccc--cCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCc
Confidence            9999999998765  8898887777 89999999999999999999999999999777777777777776542       


Q ss_pred             CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          312 PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       312 ~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ..+.+..+|+++ ++++|..++.+|.+++++.  ++.++|+++.+.+.+.+.|+
T Consensus       345 rhwqipl~rRfR-SLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE  397 (511)
T KOG0628|consen  345 RHWQIPLGRRFR-SLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFE  397 (511)
T ss_pred             cccccccccchh-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcce
Confidence            345677899887 9999999999999999999  89999999999999988775

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=2.4e-33  Score=270.99  Aligned_cols=301  Identities=28%  Similarity=0.385  Sum_probs=237.1

Q ss_pred             CCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 017569           37 MPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (369)
Q Consensus        37 ~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (369)
                      .++.++++.+++....+-.+. .+.+...+++.|.+.+++.++++.+...+..+++..++++++++++++++|++.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~----   76 (371)
T PRK13520          2 LSEEEILEELEEYRSEDLKYE-RILSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD----   76 (371)
T ss_pred             CCHHHHHHHHHHHHhcCCCHH-HeeeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC----
Confidence            567899999988765432221 223444556678888888888876655555567788888999999999999875    


Q ss_pred             CCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHH
Q 017569          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV  196 (369)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~  196 (369)
                       ..+++++||++++..++.+++...         ...+++|++++.+|+++.++++..|++++.||++++ +.+|+++|+
T Consensus        77 -~~~~~~~ggt~a~~~a~~~~~~~~---------~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~  145 (371)
T PRK13520         77 -AYGYITSGGTEANIQAVRAARNLA---------KAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDD-YRVDVKAVE  145 (371)
T ss_pred             -CCeEEecCcHHHHHHHHHHHHhhc---------cCCCceEEecCcchHHHHHHHHHcCceEEEecCCCC-CcCCHHHHH
Confidence             247899999999999988876520         012468999999999999999999999999998764 799999999


Q ss_pred             HHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc
Q 017569          197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH  276 (369)
Q Consensus       197 ~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h  276 (369)
                      +++++++++|+++.++|++|.+.|+++|.++|+++      ++++|||+||+++..++......+++...++|++++++|
T Consensus       146 ~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~------g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~  219 (371)
T PRK13520        146 DLIDDNTIGIVGIAGTTELGQVDPIPELSKIALEN------GIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPH  219 (371)
T ss_pred             HHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHc------CCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCc
Confidence            99998898888899999999999999999999999      999999999998776543322223444568999999999


Q ss_pred             cCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHH
Q 017569          277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSF  354 (369)
Q Consensus       277 K~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~  354 (369)
                      ||+++|.++|++++++++.. ..+....+|..+.. ++...||+++...+++|.+|+.++.+|++++  ++.+++++|++
T Consensus       220 K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~  297 (371)
T PRK13520        220 KMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK-QATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAE  297 (371)
T ss_pred             cccCccCCceEEEEcCHHHH-HhhcccCccccCCC-CcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHH
Confidence            99998999999998765433 22222234443321 3344588888889999999999999999877  99999999999


Q ss_pred             HHHhcCC
Q 017569          355 FVIHSSY  361 (369)
Q Consensus       355 ~L~~~g~  361 (369)
                      +|++.|+
T Consensus       298 ~L~~~g~  304 (371)
T PRK13520        298 ELKERGF  304 (371)
T ss_pred             HHHhCCC
Confidence            9998864

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=3.2e-33  Score=267.51  Aligned_cols=258  Identities=35%  Similarity=0.430  Sum_probs=213.0

Q ss_pred             cccccCCCh-HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           61 ASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        61 ~~~~~~~~~-~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      +++.+++.+ ..+.+.+...+|.+...|..+++..++|+++++|+++++|++..   ...+++|+|||+||.+++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~---~~~~~~t~ggt~a~~~al~~~~~   79 (345)
T cd06450           3 AGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE---DADGVFTSGGSESNLLALLAARD   79 (345)
T ss_pred             ccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC---CCCEEEeCChhHHHHHHHHHHHH
Confidence            344444433 55789999999988777888899999999999999999999721   24599999999999999999877


Q ss_pred             HHHHHHHhcCC-CCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCC
Q 017569          140 KWQQKRKEQGK-PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGS  212 (369)
Q Consensus       140 ~~~~~~~~~g~-~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~  212 (369)
                      ++..++...|. +.++++|++++++|+++.++++.+|++++.+|++++ +.+|+++|++++++      ++++|+++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~  158 (345)
T cd06450          80 RARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED-GRMDPEALEAAIDEDKAEGLNPIMVVATAGT  158 (345)
T ss_pred             HhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC-CCcCHHHHHHHHHHHHHCCCCcEEEEEeccc
Confidence            54322211111 122458999999999999999999999999999875 69999999999988      78899999999


Q ss_pred             CCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       213 ~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      |++|.++|+++|+++|+++      ++|+|+|+||+.+..++..... ......++|++++++|||+++|.|+|+++++ 
T Consensus       159 ~~tG~~~~~~~i~~~~~~~------~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-  230 (345)
T cd06450         159 TDTGAIDPLEEIADLAEKY------DLWLHVDAAYGGFLLPFPEPRH-LDFGIERVDSISVDPHKYGLVPLGCSAVLVR-  230 (345)
T ss_pred             CCCCCCCCHHHHHHHHHHh------CCeEEEechhhHHHhhChhhHH-HhcCccccCEEEEchhHhhCCCcchHHHHHH-
Confidence            9999999999999999999      9999999999987764322111 1223458999999999999999999988764 


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                                                      ++++|++++.++.+|++++  ++.++++++.+.|++.+.+
T Consensus       231 --------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~  270 (345)
T cd06450         231 --------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGF  270 (345)
T ss_pred             --------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence                                            6888999999999999988  9999999999999988654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=100.00  E-value=2.1e-31  Score=257.69  Aligned_cols=301  Identities=27%  Similarity=0.377  Sum_probs=230.0

Q ss_pred             CHHHHHHHHHHhhhh---cCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 017569           38 PKEAAYQVINDELML---DGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD  114 (369)
Q Consensus        38 ~~~~i~~~l~~~~~~---~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~  114 (369)
                      +.+++++.+.+++..   -..++. +.++++. +.+.+.+++..++..+...+..+++..++++++++++++++|+++  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--   76 (373)
T TIGR03812         1 SEEEVLEELKEYRSEDLKYSDGRI-LGSMCTN-PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPD--   76 (373)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCcE-EEEEeCC-chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC--
Confidence            357788888887543   223443 4455554 345556677677655555444467788889999999999999975  


Q ss_pred             CCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHH
Q 017569          115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK  194 (369)
Q Consensus       115 ~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~  194 (369)
                         ..+++++||++++..++.+++....       .+..+++|++++++|+++.++++..|++++.+|++++ +.+|+++
T Consensus        77 ---~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~-~~~d~~~  145 (373)
T TIGR03812        77 ---AYGYIVSGGTEANIQAVRAAKNLAR-------EEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDED-YTVDVKD  145 (373)
T ss_pred             ---CCeEEeccHHHHHHHHHHHHHHHHh-------ccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCC-CCcCHHH
Confidence               3478899999999888877654211       0112368999999999999999999999999999764 8999999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC---CccccccCCCCcEE
Q 017569          195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---DLEWDFRLPLVKSI  271 (369)
Q Consensus       195 L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~~~~~~~~~~~Dsi  271 (369)
                      |++++++++..++.+.++|++|.++|+++|+++|+++      ++|+|+|+||+++..++...   ....++...++|++
T Consensus       146 l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~------~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~  219 (373)
T TIGR03812       146 VEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALEN------GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSI  219 (373)
T ss_pred             HHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHc------CCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEE
Confidence            9999998886666666899999999999999999999      99999999999876654321   11345555689999


Q ss_pred             EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHH
Q 017569          272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHK  349 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a  349 (369)
                      ++++|||+.+|.++|.+++++++.+ ..+....+|.... .++...|||+...+++++++++.++.+|++++  ++.+++
T Consensus       220 ~~s~~K~~~~~~~~G~~~~~~~~~~-~~l~~~~~~~~~~-~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~  297 (373)
T TIGR03812       220 TIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVK-KQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENT  297 (373)
T ss_pred             EECccccCCCcCCceEEEEeCHHHH-hhhcccCcccCCC-CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9999999989988988887765543 2222223454322 13344589988889999999999999999887  999999


Q ss_pred             HHHHHHHHhcCC
Q 017569          350 KLSSFFVIHSSY  361 (369)
Q Consensus       350 ~~l~~~L~~~g~  361 (369)
                      ++|+++|++.|+
T Consensus       298 ~~l~~~L~~~g~  309 (373)
T TIGR03812       298 RYLVEELKKIGF  309 (373)
T ss_pred             HHHHHHHHhCCC
Confidence            999999999885

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.98  E-value=2.8e-30  Score=242.21  Aligned_cols=262  Identities=16%  Similarity=0.101  Sum_probs=209.0

Q ss_pred             ccCCChHHHHHHHHHHhccCCCCCCC----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      .++++.|.+.+.+..++....++|.+    +....++-++.++.+++++|+++     ..++||+||||+|.+++..+..
T Consensus         9 ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~-----~eIiFTSG~TEsnNlaI~g~~~   83 (386)
T COG1104           9 ATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP-----EEIIFTSGATESNNLAIKGAAL   83 (386)
T ss_pred             ccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEecCCcHHHHHHHHhhHH
Confidence            46677788999988888765555432    23556777789999999999997     3599999999999999998544


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh---cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      .+..       ...+..||+|...|.++...++++   |++|.++|++.+ |.+|+++|+++|+++|.+|.+.+.||.+|
T Consensus        84 a~~~-------~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~-G~v~~e~L~~al~~~T~LVSim~aNnE~G  155 (386)
T COG1104          84 AYRN-------AQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSN-GLVDLEQLEEALRPDTILVSIMHANNETG  155 (386)
T ss_pred             hhhc-------ccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCC-CeEcHHHHHHhcCCCceEEEEEecccCee
Confidence            3221       112458999999999999999988   999999999985 99999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      ++.|+++|+++|+++      ++++|+|++++.+-+       +.++...++|.+++|+||+. +|.|+|++++|+...+
T Consensus       156 ~IQpI~ei~~i~k~~------~i~fHvDAvQa~Gki-------pi~~~~~~vD~ls~SaHK~~-GpkGiGaLyv~~~~~~  221 (386)
T COG1104         156 TIQPIAEIGEICKER------GILFHVDAVQAVGKI-------PIDLEELGVDLLSFSAHKFG-GPKGIGALYVRPGVRL  221 (386)
T ss_pred             ecccHHHHHHHHHHc------CCeEEEehhhhcCce-------eccccccCcceEEeehhhcc-CCCceEEEEECCCCcc
Confidence            999999999999999      999999999987655       45666557999999999996 8999999999654322


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                            .+-..++.+......||-+...++++..+++.-- +.+...  +...+-.+|.+.|.+.
T Consensus       222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~-~~~~~~~~~~~~lr~~l~~~l~~~  279 (386)
T COG1104         222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAV-EELEEENARLRKLRDRLEDGLLEI  279 (386)
T ss_pred             ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  2333455544434567887777777777766553 344444  7888889999999864

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-29  Score=243.19  Aligned_cols=276  Identities=18%  Similarity=0.106  Sum_probs=216.5

Q ss_pred             CCCccccccccCCChHHHHHHHHHHhc---cCCCC--CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           55 NPRLNLASFVTTWMEPECDKLVMASIN---KNYVD--MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        55 ~p~~~l~~~~~~~~~~~v~~~~~~~~~---~n~~~--~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      .|...|-+..++..|..+.+.+.+++.   .|.+.  +......++..+++++.+++++|+++.    ..+++|.|.|+|
T Consensus        21 ~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~----~eIvft~~tT~a   96 (405)
T COG0520          21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS----DEIVFTRGTTEA   96 (405)
T ss_pred             CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCChhHH
Confidence            343323344444556778888887653   34332  223345677888999999999999951    359999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTIC  205 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~  205 (369)
                      +.+...++...+.          .+++||+++..|++    |...++..|++++++|+++ ++.+|.+++++.++++|++
T Consensus        97 ln~va~~l~~~~~----------~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~-~g~~~~~~~~~~i~~~Tkl  165 (405)
T COG0520          97 LNLVARGLGRSLK----------PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD-DGLLDLDALEKLITPKTKL  165 (405)
T ss_pred             HHHHHHHhhhhhc----------CCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC-CCCcCHHHHHHhcCCCceE
Confidence            9998888753211          24799999999987    5666677799999999985 5999999999999999999


Q ss_pred             EEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe
Q 017569          206 VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (369)
Q Consensus       206 v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~  285 (369)
                      |.+++.+|.||.+.|+++|+++||++      |+|++||+|++.+..       ++|++..++|++.+|+|||+++|.|+
T Consensus       166 vais~vSn~tG~~~pv~~I~~la~~~------ga~v~VDaaq~~~h~-------~idv~~l~~Df~afsgHKwl~gP~Gi  232 (405)
T COG0520         166 VALSHVSNVTGTVNPVKEIAELAHEH------GALVLVDAAQAAGHL-------PIDVQELGCDFLAFSGHKWLLGPTGI  232 (405)
T ss_pred             EEEECccccccccchHHHHHHHHHHc------CCEEEEECccccCcc-------CCCchhcCCCEEEEcccccccCCCce
Confidence            99999999999999999999999999      999999999997665       46777779999999999999999999


Q ss_pred             EEEEEeCCCCcccccccccCccCCC-----CC--Cc--------cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHH
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSD-----QP--TF--------TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDH  348 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~-----~~--~~--------~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~  348 (369)
                      |+|++|+. .+ +.+  .+...++.     ..  ..        ...||.+...++.+-++++.+...|+..+  +..++
T Consensus       233 GvLy~r~~-~l-~~l--~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L  308 (405)
T COG0520         233 GVLYVRKE-LL-EEL--EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHEREL  308 (405)
T ss_pred             EEEEEchH-HH-hhc--CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999864 22 121  11111111     00  00        12488888889999999999999999988  99999


Q ss_pred             HHHHHHHHHhcCCC
Q 017569          349 KKLSSFFVIHSSYF  362 (369)
Q Consensus       349 a~~l~~~L~~~g~~  362 (369)
                      ++|+.++|++.+.+
T Consensus       309 ~~~~~~~L~~~~~v  322 (405)
T COG0520         309 TEYLLEGLSELPGV  322 (405)
T ss_pred             HHHHHHHHhcCCCe
Confidence            99999999998754

>PLN02651 cysteine desulfurase

Probab=99.96  E-value=2.6e-27  Score=228.54  Aligned_cols=260  Identities=15%  Similarity=0.078  Sum_probs=199.7

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      +++.++.+.+++.+++.....++..     +....++.+++++.+++++|.+++     .+++|+|+|+++.+++.++..
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~t~~~t~a~~~~l~~~~~   82 (364)
T PLN02651          8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-----EIIFTSGATESNNLAIKGVMH   82 (364)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHHHH
Confidence            4456677888888776543333221     234466677889999999999852     489999999999999887654


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh---hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      .+.         ..+++|+++...|+++...+.   ..|++++.+|++++ +.+|+++|++++++++++|++++++|+||
T Consensus        83 ~~~---------~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~v~~~~n~tG  152 (364)
T PLN02651         83 FYK---------DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSD-GLVDLDELAAAIRPDTALVSVMAVNNEIG  152 (364)
T ss_pred             hcc---------CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhcCCCcEEEEEECCCCCce
Confidence            211         124689999999988655443   45889999998764 89999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      .+.|+++|+++|+++      ++++|||++++.+..|       +++...++|++++++||| ++|.|+|+++++++...
T Consensus       153 ~~~~l~~I~~~~~~~------g~~~~vD~a~~~g~~~-------~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~  218 (364)
T PLN02651        153 VIQPVEEIGELCREK------KVLFHTDAAQAVGKIP-------VDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRV  218 (364)
T ss_pred             ecccHHHHHHHHHHc------CCEEEEEcchhhCCcc-------cCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCC
Confidence            999999999999999      9999999999976652       445555799999999999 68999999999875321


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                        .+  .+.+.++........||.+...++++..+|..+... .+.+  ++.++++++.+.|.+
T Consensus       219 --~l--~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-~~~i~~~~~~l~~~l~~~l~~  277 (364)
T PLN02651        219 --RL--EPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKE-MDYDEKHMKALRERLLNGLRA  277 (364)
T ss_pred             --CC--CccccCCCccCCccCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHh
Confidence              11  222222222111235899988899999999998654 4665  999999999999975

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.96  E-value=9.4e-28  Score=233.62  Aligned_cols=300  Identities=14%  Similarity=0.075  Sum_probs=211.7

Q ss_pred             HhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCc-cccccccCCChH-HHHHHHHH-Hhc--c------CC--CCCC-
Q 017569           23 VRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL-NLASFVTTWMEP-ECDKLVMA-SIN--K------NY--VDMD-   88 (369)
Q Consensus        23 ~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~-~l~~~~~~~~~~-~v~~~~~~-~~~--~------n~--~~~~-   88 (369)
                      ++..+.+-.+|++|.+.+.|...+.++-.++.+... |.+.+.   .+. ....++.+ .++  .      +.  .++. 
T Consensus        21 ~~~~~~~~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~ge---re~rv~~~~~~~~~~~~~hgigr~~~l~~~q~ka   97 (444)
T TIGR03531        21 IERLLEQRKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGE---REGRVFSKLVARRHYRFCHGIGRSGDLVAPQPKA   97 (444)
T ss_pred             HHHHHHcCcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCc---ccceeechhhhhcccceecCCCCcccccccCccc
Confidence            355666778999999999999999988765533222 111111   111 11222221 111  0      11  1111 


Q ss_pred             -CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           89 -EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        89 -~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                       .++....+.+++.+++++++|.+..    ...++++||| .++.+++.+++..          ...+++||+|..+|.+
T Consensus        98 ~gss~~~~l~~~~e~~~~~~~G~~~~----~~a~~v~~~Tg~al~laL~alr~~----------~~~gd~VI~p~~th~S  163 (444)
T TIGR03531        98 AGSSLLYKLTNKLVKDFLKLLGLRSI----KSAFVVPLATGMSLSLCLSALRHK----------RPKAKYVIWPRIDQKS  163 (444)
T ss_pred             cCccHHHHHHHHHHHHHHHHcCCCCC----CEEEEECCHHHHHHHHHHHHcCCc----------CCCCCEEEEECcChHH
Confidence             1234678889999999999999831    2378899999 7888888776531          1124689999999999


Q ss_pred             HHHHHhhhcceeEEEec--cCCccccCHHHHHHHHhh---cCcEEEEeeCC-CCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          167 WEKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDE---NTICVAAILGS-TLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~-~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      +.+++.+.|++++.||+  +++++.+|+++|+++|++   +++++++++++ +.+|.++|+++|+++|+++      ++|
T Consensus       164 ~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~------gI~  237 (444)
T TIGR03531       164 CIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANY------DIP  237 (444)
T ss_pred             HHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHc------CCE
Confidence            99999999999999995  566799999999999986   44555555554 4556889999999999999      999


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCc
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK  320 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr  320 (369)
                      +|+|+|||.+.. +..+.....+....+|++++|+||++++|.++|++++++++.. ..+.  ..|.+          ..
T Consensus       238 lIvDaAyg~~~~-~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~-~~i~--~~y~g----------~~  303 (444)
T TIGR03531       238 HIVNNAYGLQSN-KYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFI-QEIS--KSYPG----------RA  303 (444)
T ss_pred             EEEECcCcCcCh-hhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHH-HHHH--HhccC----------CC
Confidence            999999996332 1111111122233589999999999999988888888876554 2221  12322          11


Q ss_pred             chhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          321 GSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       321 ~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +...+..+|+++..+|.+|++++  +..++++++.++|++.
T Consensus       304 ~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       304 SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKL  344 (444)
T ss_pred             CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22357889999999999999999  8999999999999874

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.95  E-value=4e-26  Score=227.27  Aligned_cols=300  Identities=11%  Similarity=0.018  Sum_probs=209.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhhhcCC--CCcccccc-ccCCChHHHHHHHHHHh-ccCCCCC--C-CCcchHHHHHHHHH
Q 017569           30 FKMPDNSMPKEAAYQVINDELMLDGN--PRLNLASF-VTTWMEPECDKLVMASI-NKNYVDM--D-EYPVTTELQNRCVN  102 (369)
Q Consensus        30 ~~~p~~~~~~~~i~~~l~~~~~~~~~--p~~~l~~~-~~~~~~~~v~~~~~~~~-~~n~~~~--~-~~~~~~~le~~~~~  102 (369)
                      ..+|+  .++.++++.++++...+..  ..| ++.+ .....+|.+.+.+.+.- ..+.+.|  . .+++..+++.++++
T Consensus        44 ~~~~~--~se~~~~~~~~~l~~~n~~~~~~~-~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~  120 (481)
T PRK04366         44 PELPE--VSELEVVRHYTRLSQKNYGVDTGF-YPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQE  120 (481)
T ss_pred             CCCCC--CCHHHHHHHHHHHHhcCCCCCcce-ecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHH
Confidence            45666  8999999999988765533  122 2333 22334566666665541 1233333  2 56688899999999


Q ss_pred             HHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEe
Q 017569          103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK  182 (369)
Q Consensus       103 ~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~  182 (369)
                      ++++++|++.      ..+..++|+.+.+.++..++....    ..|. ..+++|+++++.|+++...++..|++++.+|
T Consensus       121 ~la~l~G~~~------~~l~~~~GA~a~~~~l~~~r~~~~----~~Gd-~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~  189 (481)
T PRK04366        121 WLKEITGMDA------VTLQPAAGAHGELTGLLMIRAYHE----ARGD-TKRTEVIVPDSAHGTNPASAAMAGFKVVEIP  189 (481)
T ss_pred             HHHHHhCCCc------eEEEeCcHHHHHHHHHHHHHHHhh----ccCc-CCCCEEEEcCCccHhHHHHHHHcCCEEEEee
Confidence            9999999974      144445666666555444332110    0111 1245899999999999999999999999999


Q ss_pred             ccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc
Q 017569          183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (369)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (369)
                      ++++ +.+|+++|++++++++++|++++|+ ++|.+ +|+++|+++|+++      ++|+|||+|+..+..+.+.     
T Consensus       190 ~~~~-~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~------gal~iVD~a~~~~~~g~~~-----  256 (481)
T PRK04366        190 SNED-GLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEA------GGLLYYDGANLNAILGKAR-----  256 (481)
T ss_pred             cCCC-CCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHc------CCEEEEEecChhhhcccCC-----
Confidence            9764 8999999999999999999999987 89988 5899999999999      9999999998654332221     


Q ss_pred             cccCCCCcEEEEcCccCCCCCCC-----eEEEEEeCCCCcccccccc------cCccCCCCCCcc----ccCCcchhHHH
Q 017569          262 DFRLPLVKSINVSGHKYGLVYAG-----VGWVVWRTKDDLPDELVFH------INYLGSDQPTFT----LNFSKGSSQII  326 (369)
Q Consensus       262 ~~~~~~~Dsi~~~~hK~l~~p~g-----~g~l~~~~~~~~~~~~~~~------~~y~~~~~~~~~----l~~tr~~~~~l  326 (369)
                       ....++|++++++|||+++|.|     +|+++++++ .. +.+...      ..|.-..+....    -.+|.++..++
T Consensus       257 -~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~-~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~  333 (481)
T PRK04366        257 -PGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LA-PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLV  333 (481)
T ss_pred             -ccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hH-hhCCCCeeeccCCceeecccccccCCCcccccCchHHHH
Confidence             1244899999999999987754     568888764 21 121100      011100000000    11233456689


Q ss_pred             HHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          327 AQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       327 ~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++|..+..+|.+|++++  +++++|+||+++|++.
T Consensus       334 ~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        334 RAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            99999999999999997  8899999999999986

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.95  E-value=3.5e-26  Score=219.76  Aligned_cols=266  Identities=15%  Similarity=0.103  Sum_probs=197.5

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      .+++++.+.+++.+++.....++..     .....++.+++++++++++|++++     .+++|+|+++++..++.++..
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~~~g~t~a~~~~l~~l~~   81 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-----EVIFTSGATESNNLAILGLAR   81 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHHHH
Confidence            3355677888888777432222221     112345667899999999999862     489999999999988887654


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      .        +....++.|+++...|+++....   +..|++++.+|++++ +.+|+++|++++++++++|++++++|+||
T Consensus        82 ~--------~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~~~~~~n~tG  152 (353)
T TIGR03235        82 A--------GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDES-GRIDVDELADAIRPDTLLVSIMHVNNETG  152 (353)
T ss_pred             h--------cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhCCCCCEEEEEEcccCCce
Confidence            2        11111367999999998865544   446999999998864 78999999999998999999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      .+.|+++|+++|+++      ++|+|+|++++.+..+       +++...++|++++++||| ++|.|+|+++++++...
T Consensus       153 ~~~~~~~I~~l~~~~------~~~~ivD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~  218 (353)
T TIGR03235       153 SIQPIREIAEVLEAH------EAFFHVDAAQVVGKIT-------VDLSADRIDLISCSGHKI-YGPKGIGALVIRKRGKP  218 (353)
T ss_pred             eccCHHHHHHHHHHc------CCEEEEEchhhcCCcc-------ccccccCCCEEEeehhhc-CCCCceEEEEEccCccc
Confidence            999999999999999      9999999998876552       344445799999999999 57999999999875321


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ...  ..+.+.++........||.+....+++..+++.+. +|.+++  ++.++++++++.|++.|+
T Consensus       219 ~~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~  282 (353)
T TIGR03235       219 KAP--LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGV  282 (353)
T ss_pred             ccc--cCceeeCCCCcCccccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCe
Confidence            111  11222222111112246777777888888888764 577666  999999999999988664

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=3.6e-26  Score=221.31  Aligned_cols=263  Identities=15%  Similarity=0.071  Sum_probs=198.7

Q ss_pred             CChHHHHHHHHHHhccCCCC--CCCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD--MDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~--~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      ++++.+.+.+.++++.+...  +..++   ......+++++++++++|.+..    ..+.+|+|+++++.+++.+...  
T Consensus        11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~--   84 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSS----AHVVFTNNATTALNIALKGLLK--   84 (376)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCC----CeEEEeCCHHHHHHHHHHhccC--
Confidence            44567888887777653222  11222   2345666788889999998742    2488999999999888776433  


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                                 .+++|+++..+|.++.    ..++..|++++.++++.+ +.+|+++|++++++++++|++++++|+||.
T Consensus        85 -----------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~  152 (376)
T TIGR01977        85 -----------EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNE-GLISPERIKRAIKTNTKLIVVSHASNVTGT  152 (376)
T ss_pred             -----------CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CCcCHHHHHHhcCCCCeEEEEECCCCCccc
Confidence                       1478999999998754    345566999999998764 789999999999989999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|.++|+++      ++++++|++++.+..+       +++...++|++++++|||+++|.|+|+++++++..+.
T Consensus       153 ~~~~~~i~~l~~~~------~~~livD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~  219 (376)
T TIGR01977       153 ILPIEEIGELAQEN------GIFFILDAAQTAGVIP-------IDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLK  219 (376)
T ss_pred             cCCHHHHHHHHHHc------CCEEEEEhhhccCccC-------CCchhcCCCEEEecccccccCCCCceEEEEcCCcCcC
Confidence            99999999999999      9999999999876652       3444558999999999999999999999998765321


Q ss_pred             cccccccC----ccCCCC---CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          298 DELVFHIN----YLGSDQ---PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 ~~~~~~~~----y~~~~~---~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ........    +.....   ..+ -.+|.+....++++.+++.+..+|++.+  ++.++++++++.|.+.+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~r~-~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~  291 (376)
T TIGR01977       220 PLKSGGTGSHSALIDQPSELPDRF-ESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINK  291 (376)
T ss_pred             ceecCCCccccccccccccchhhc-cCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            11110000    000000   001 1267777778999999999999999888  999999999999997664

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.95  E-value=1.7e-26  Score=217.63  Aligned_cols=246  Identities=18%  Similarity=0.108  Sum_probs=192.4

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCCCC-c--chH-HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMDEY-P--VTT-ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~-~--~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      +....+++.++.|.+++..++.....+|... .  ... ++| +.|+.+|+++|+++.     .++||+|+||||.+++.
T Consensus        47 ld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E-~aR~~VAklInAd~~-----dIiFts~ATEs~Nlvl~  120 (428)
T KOG1549|consen   47 LDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVE-AAREQVAKLINADPS-----DIVFTSGATESNNLVLK  120 (428)
T ss_pred             EecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHH-HHHHHHHHHhCCCCC-----cEEEeCCchHHHHHHHH
Confidence            4444556677889998888776544443322 2  223 344 789999999999973     39999999999999998


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh---cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      ......       +. ..+..||+....|.++...++.+   |++++++|++ +++..|.+.+++.|+++|++|.+.+.+
T Consensus       121 ~v~~~~-------~~-~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~~T~lv~I~~Vn  191 (428)
T KOG1549|consen  121 GVARFF-------GD-KTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGLVDISKLREAIRSKTRLVSIMHVN  191 (428)
T ss_pred             Hhhccc-------cc-cccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-ccccccHHHHHHhcCCCceEEEEEecc
Confidence            865431       11 11227999999999988888754   8999999998 468999999999999999999999999


Q ss_pred             CCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       213 ~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      |..|.+.|+++|+++|++.      ++.+|+|+|++.+-.       +.|++..++|.+++++|||+ +|+|+|+|++|.
T Consensus       192 n~~gv~~Pv~EI~~icr~~------~v~v~~DaAQavG~i-------~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~  257 (428)
T KOG1549|consen  192 NEIGVLQPVKEIVKICREE------GVQVHVDAAQAVGKI-------PVDVQELNADFLSISAHKIY-GPPGIGALYVRR  257 (428)
T ss_pred             cCccccccHHHHHHHhCcC------CcEEEeehhhhcCCc-------cccHHHcCchheeeeccccc-CCCcceEEEEcc
Confidence            9999999999999999999      999999999997655       56777779999999999997 555599999986


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF  337 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~  337 (369)
                      ..   ..+...+.+.++.+..-...||+....++.+-.+.+..-.
T Consensus       258 ~~---~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~  299 (428)
T KOG1549|consen  258 KR---PRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNK  299 (428)
T ss_pred             CC---CcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHh
Confidence            21   2233456777776543345688888888888888887743

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.95  E-value=2.7e-26  Score=241.34  Aligned_cols=296  Identities=11%  Similarity=0.028  Sum_probs=208.5

Q ss_pred             CCHHHHHHHHHHhhhhcCC---CCccccccccCCChHHHHHHHHH---HhccCCCCC-CCCcchHHHHHHHHHHHHHHhC
Q 017569           37 MPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVMA---SINKNYVDM-DEYPVTTELQNRCVNMIAHLFN  109 (369)
Q Consensus        37 ~~~~~i~~~l~~~~~~~~~---p~~~l~~~~~~~~~~~v~~~~~~---~~~~n~~~~-~~~~~~~~le~~~~~~la~l~g  109 (369)
                      .++.++++.++++-..+..   ..+.+++ ++....+.+.+.+..   +.+-.++.+ +.+++..+++.++.+|+++++|
T Consensus       478 ~sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG  556 (954)
T PRK05367        478 HSETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITG  556 (954)
T ss_pred             CCHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3888999999988766532   2234544 666555554444332   222233444 3456788999999999999999


Q ss_pred             CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccc
Q 017569          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV  189 (369)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~  189 (369)
                      ++.      .....+||+.|++.++++++....    ..|. .++.+|++|+..|.+....+..+|++++.||++++ +.
T Consensus       557 ~d~------~sl~~~~ga~ge~agL~a~r~~~~----~~G~-~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~-G~  624 (954)
T PRK05367        557 YDA------VSLQPNAGAQGEYAGLLAIRAYHE----SRGE-GHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN-GN  624 (954)
T ss_pred             CCC------EEECccHHHHHHHHHHHHHHHHhh----ccCC-CCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC-CC
Confidence            984      234456888999888877765311    1121 12458999999999999999999999999999874 89


Q ss_pred             cCHHHHHHHHhh---cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCC
Q 017569          190 MNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (369)
Q Consensus       190 ~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (369)
                      +|+++|++++++   ++.+|++++|++..+..+|+++|+++|+++      |+|+|||+|+.....++..|      ...
T Consensus       625 iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~------G~~v~VDgA~~~al~~l~~p------g~~  692 (954)
T PRK05367        625 IDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEH------GGQVYLDGANMNAQVGLARP------GDI  692 (954)
T ss_pred             cCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHc------CCEEEEECcChhhccCCCCh------hhc
Confidence            999999999976   467889999998844458999999999999      99999999997655433222      134


Q ss_pred             CCcEEEEcCccCCCCCCC-----eEEEEEeCCCCcccccccccCccCCCCCCccccCCc---chhHHHHHHHHHHHhcHh
Q 017569          267 LVKSINVSGHKYGLVYAG-----VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK---GSSQIIAQYYQFIRLGFE  338 (369)
Q Consensus       267 ~~Dsi~~~~hK~l~~p~g-----~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr---~~~~~l~~~~~l~~lg~~  338 (369)
                      ++|++++|+|||+++|.|     +|++++|+.  +...+.....-............+.   ++..++..|++++.+|.+
T Consensus       693 GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~  770 (954)
T PRK05367        693 GADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAE  770 (954)
T ss_pred             CCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHH
Confidence            899999999999876665     569998742  2222211110000000000111122   124567799999999999


Q ss_pred             hHHHH--HhhHHHHHHHHHHHhc
Q 017569          339 VIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       339 G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |++++  +++.+|+|++++|++.
T Consensus       771 Glr~~a~~~~~~A~Yl~~~L~~~  793 (954)
T PRK05367        771 GLRQATEVAILNANYIAKRLKDH  793 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999  8999999999999763

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=2.5e-25  Score=230.51  Aligned_cols=292  Identities=11%  Similarity=0.036  Sum_probs=214.3

Q ss_pred             CHHHHHHHHHHhhhhcCC---CCccccccccCCChHHHHHHHH----HHhccCCCCCC-CCcchHHHHHHHHHHHHHHhC
Q 017569           38 PKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVM----ASINKNYVDMD-EYPVTTELQNRCVNMIAHLFN  109 (369)
Q Consensus        38 ~~~~i~~~l~~~~~~~~~---p~~~l~~~~~~~~~~~v~~~~~----~~~~~n~~~~~-~~~~~~~le~~~~~~la~l~g  109 (369)
                      ++.++++.++.+-..+..   .-+.+++ ++... +.+.+.+.    ++++-.++.+. .++|..+++.++.+|+++++|
T Consensus       467 sE~e~~r~~~~L~~kn~~~~~~fi~lGs-ctmk~-na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltG  544 (939)
T TIGR00461       467 SETEMLRYLHRLESKDLALNNSMIPLGS-CTMKL-NATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITG  544 (939)
T ss_pred             CHHHHHHHHHHHHhcCCCccccCCCCcc-CCCcc-CHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHC
Confidence            889999999887665432   2222222 22222 33344442    33433344444 466899999999999999999


Q ss_pred             CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccc
Q 017569          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV  189 (369)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~  189 (369)
                      ++.      .+...+||+.|.+.+++++|.... .   .|. .++.+|++|...|.+....++..|++++.||++++ +.
T Consensus       545 md~------~Sl~p~aGA~gE~agL~aiR~y~~-~---rge-~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~-G~  612 (939)
T TIGR00461       545 FDA------ISLQPNSGAQGEYAGLRVIRSYHE-S---RGE-NHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQD-GN  612 (939)
T ss_pred             CCC------cccCCchHHHHHHHHHHHHHHHHH-h---cCC-CCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCC-CC
Confidence            994      367778899999888888876431 1   121 23568999999998888889999999999999864 89


Q ss_pred             cCHHHHHHHHhh---cCcEEEEeeCCCCcccCCC-HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC
Q 017569          190 MNPVKAVELVDE---NTICVAAILGSTLTGEFED-VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL  265 (369)
Q Consensus       190 ~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~-l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  265 (369)
                      +|+++|++++++   ++++|++++|+| +|.++| +++|+++|+++      +.++++|+|+.........|      ..
T Consensus       613 iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~------G~~v~VDgAq~~al~~l~~P------g~  679 (939)
T TIGR00461       613 IDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSF------GGQVYLDGANMNAQVGLTSP------GD  679 (939)
T ss_pred             cCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHc------CCEEEEEecChhhCCCCCCc------cc
Confidence            999999999984   889999999999 699977 99999999999      99999999986533311111      24


Q ss_pred             CCCcEEEEcCccCCC-----CCCCeEEEEEeCCCCccccccccc---CccC-CCCCC--ccc-cCCcchhHHHHHHHHHH
Q 017569          266 PLVKSINVSGHKYGL-----VYAGVGWVVWRTKDDLPDELVFHI---NYLG-SDQPT--FTL-NFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       266 ~~~Dsi~~~~hK~l~-----~p~g~g~l~~~~~~~~~~~~~~~~---~y~~-~~~~~--~~l-~~tr~~~~~l~~~~~l~  333 (369)
                      .++|++++|.||+++     +|+|.|++++|+.  +...+....   .+-. +....  .+. .+++++..++..|++|+
T Consensus       680 ~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~  757 (939)
T TIGR00461       680 LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIK  757 (939)
T ss_pred             cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHH
Confidence            589999999999988     5566699999853  322222110   0000 01111  122 26777778899999999


Q ss_pred             HhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          334 RLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       334 ~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      .+|.+|++++  .++.+|+|++++|.+
T Consensus       758 ~lG~~GL~~~a~~ailnAnYl~~rL~~  784 (939)
T TIGR00461       758 MMGNEGLPKASVVAILNANYMATRLKD  784 (939)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999998  899999999999987

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.95  E-value=3.3e-25  Score=216.74  Aligned_cols=265  Identities=17%  Similarity=0.103  Sum_probs=197.2

Q ss_pred             cccCCChHHHHHHHHHHhccCCCCCCC--C---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           63 FVTTWMEPECDKLVMASINKNYVDMDE--Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~~n~~~~~~--~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      ..+++.++.+.+++..++.....++..  .   ....+..+++++.+++++|++++     .+++|+|+|+++.+++.++
T Consensus        10 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~v~~~~g~t~a~~~~l~~l   84 (402)
T TIGR02006        10 AATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-----EIVFTSGATESNNLAIKGI   84 (402)
T ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEeCCHHHHHHHHHHHH
Confidence            334566677888887777543333221  1   11235566788899999999752     4899999999999988776


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh---hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ...+.         ..+++|+++..+|+++...+.   ..|++++.||++++ +.+|+++|++++++++++|++++++|+
T Consensus        85 ~~~~~---------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~v~~~~n~  154 (402)
T TIGR02006        85 AHFYK---------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSN-GLIDLEELKAAIRDDTILVSIMHVNNE  154 (402)
T ss_pred             HHhhc---------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCC-CcCCHHHHHHhcCCCCEEEEEECCCcC
Confidence            53210         124689999999998776653   45999999998864 889999999999989999999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      +|.+.|+++|+++|+++      ++++|+|++++.+..|       +++...++|++++++||++ +|.|+|+++++++.
T Consensus       155 tG~~~~~~~I~~l~~~~------g~~livD~a~a~g~~~-------~~~~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~  220 (402)
T TIGR02006       155 IGVIQDIAAIGEICRER------KVFFHVDAAQSVGKIP-------INVNELKVDLMSISGHKIY-GPKGIGALYVRRKP  220 (402)
T ss_pred             ceecccHHHHHHHHHHc------CCEEEEEcchhcCCcc-------cCccccCCCEEEEehhhhc-CCCceEEEEEccCC
Confidence            99999999999999999      9999999999876552       3444458999999999975 79999999998653


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ...  +  .+.+.++........||.+....+++..+++.+. +++..+  +..++++++++.|++++.
T Consensus       221 ~~~--~--~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~  284 (402)
T TIGR02006       221 RVR--L--EALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEE  284 (402)
T ss_pred             CCC--C--CceecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            321  1  1111122111111246777777888888888774 466666  999999999999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.94  E-value=3.1e-25  Score=216.58  Aligned_cols=267  Identities=18%  Similarity=0.127  Sum_probs=198.2

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCC--CC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDM--DE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~--~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |.+...++.++.+.+++.++++....++  ..   .....+..+++++.+++++|++..    ..+++|+|+|+++.+++
T Consensus        20 ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~~i~~t~g~t~~l~~~~   95 (398)
T TIGR03392        20 LDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA----ENIVWTRGTTESINLVA   95 (398)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCChHHHHHHHH
Confidence            4444445566778888888775322221  11   123445567888999999999521    24889999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++....         -..+++|++++++|++    +...++..|++++.+|++.+ +.+|+++|+++++++|++|++++
T Consensus        96 ~~~~~~~---------~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~i~~~t~lv~i~~  165 (398)
T TIGR03392        96 QSYARPR---------LQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD-LLPDIRQLPELLTPRTRILALGQ  165 (398)
T ss_pred             HHhhhcc---------CCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC-CCcCHHHHHHHhccCceEEEEEC
Confidence            8763210         0124689999999976    45567888999999999865 78999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ++|+||.+.|+++|+++|+++      ++++++|++|+.+..+       .++...++|.+++++||+ ++|.|+|++++
T Consensus       166 ~~n~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~~~~~-------~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~  231 (398)
T TIGR03392       166 MSNVTGGCPDLARAITLAHQY------GAVVVVDGAQGVVHGP-------PDVQALDIDFYAFSGHKL-YGPTGIGVLYG  231 (398)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEhhhhcCCCC-------CChhhcCCCEEEEecccc-cCCCceEEEEE
Confidence            999999999999999999999      9999999999754432       233334689999999995 57899999987


Q ss_pred             eCCCCcccccccccCccCCCC----------------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHH
Q 017569          291 RTKDDLPDELVFHINYLGSDQ----------------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLS  352 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~----------------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l  352 (369)
                      +++ .. ..+.   .+.++..                ..+ ..||.+....+++.++++.+...|+.++  +..++++++
T Consensus       232 ~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l  305 (398)
T TIGR03392       232 KTE-LL-EAMP---PWQGGGKMLSHVSFDGFIPQAVPHRF-EAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLA  305 (398)
T ss_pred             cHH-HH-hhCC---CeecCCceEeeccccccccCCChhhc-cCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            643 22 1111   1111100                011 2478888889999999999877888777  889999999


Q ss_pred             HHHHHhcC
Q 017569          353 SFFVIHSS  360 (369)
Q Consensus       353 ~~~L~~~g  360 (369)
                      ++.|.+++
T Consensus       306 ~~~l~~l~  313 (398)
T TIGR03392       306 EERLAQLP  313 (398)
T ss_pred             HHHHhcCC
Confidence            99998874

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.94  E-value=7.5e-25  Score=212.53  Aligned_cols=257  Identities=14%  Similarity=0.064  Sum_probs=193.4

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC-C---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE-Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~-~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.++.+.+++.++++....++.. +   +...++.+++++++++++|+++     ..+++|+|+|+++.+++.++...
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~-----~~i~~t~~~t~a~~~al~~~~~~   82 (379)
T TIGR03402         8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEP-----DEIIFTSGGTESDNTAIKSALAA   82 (379)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCcHHHHHHHHHHHHHHh
Confidence            4455677888888777543333221 1   2345667789999999999975     24899999999999998876532


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHh---hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      .+          .+++|+++..+|+++...+.   ..|++++.+|++.+ +.+|++++++++++++++|++++++|++|.
T Consensus        83 ~~----------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~  151 (379)
T TIGR03402        83 QP----------EKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE-GRLDLEELRAAITDDTALVSVMWANNETGT  151 (379)
T ss_pred             cC----------CCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC-CcCCHHHHHHhcCCCcEEEEEEcccCCeee
Confidence            10          13589999999988765443   35999999998764 789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|+++|+++      |+++|+|++++.+..       ++++...++|++++++|| +++|.|+|++++++...+ 
T Consensus       152 ~~~~~~I~~l~~~~------g~~vivD~~~~~g~~-------~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~-  216 (379)
T TIGR03402       152 IFPIEEIGEIAKER------GALFHTDAVQAVGKI-------PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTRF-  216 (379)
T ss_pred             cccHHHHHHHHHHc------CCEEEEECccccccc-------ccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCCC-
Confidence            99999999999999      999999999986544       244444589999999999 568999999999864321 


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                           .+.+.++........||.+....+++..+++.+- ++++++  +..++.+++++.|.+
T Consensus       217 -----~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~  273 (379)
T TIGR03402       217 -----RPLLRGGHQERGRRAGTENVPGIVGLGKAAELAT-EHLEEENTRVRALRDRLEAGLLA  273 (379)
T ss_pred             -----CCcccCCccCCCcCCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHh
Confidence                 1222222111111247777777788888887763 456665  888999999999875

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=4e-25  Score=213.83  Aligned_cols=264  Identities=16%  Similarity=0.075  Sum_probs=195.7

Q ss_pred             CChHHHHHHHHHHhccCCCCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      ++++.+.+++.+.+......+     ..++...+...++++++++++|.+..    ..+++|+|+++++.+++.++... 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~g~t~a~~~~~~~l~~~-   84 (373)
T cd06453          10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSP----DEIIFTRNTTEAINLVAYGLGRA-   84 (373)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC----CeEEEeCCHHHHHHHHHHHhhhc-
Confidence            444667777766664322211     12244566777888999999998721    34889999999999988887541 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchH----HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                               ...+++|++++++|++.    ...++..|++++.||++. ++.+|+++|++++++++++|++++++|++|.
T Consensus        85 ---------~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~  154 (373)
T cd06453          85 ---------NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQLDLEALEKLLTERTKLVAVTHVSNVLGT  154 (373)
T ss_pred             ---------CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCcCHHHHHHHhcCCceEEEEeCcccccCC
Confidence                     01246899999999884    445667899999999985 4899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|.++|+++      ++++|+|++++.+..+       +++...++|++++++|||+++ .|+|+++++++ .. 
T Consensus       155 ~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~-~~-  218 (373)
T cd06453         155 INPVKEIGEIAHEA------GVPVLVDGAQSAGHMP-------VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEE-LL-  218 (373)
T ss_pred             cCCHHHHHHHHHHc------CCEEEEEhhhhcCcee-------eeccccCCCEEEeccccccCC-CCcEEEEEchH-Hh-
Confidence            99999999999999      9999999998865542       233334789999999999876 88899988653 22 


Q ss_pred             ccccc-ccCcc--------CCC----CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          298 DELVF-HINYL--------GSD----QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       298 ~~~~~-~~~y~--------~~~----~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ..+.. ...+.        ...    ...+ ..+|.+....+++|.+++.+..+|++++  ++.++++++++.|++++.+
T Consensus       219 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~  297 (373)
T cd06453         219 EEMPPYGGGGEMIEEVSFEETTYADLPHKF-EAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGV  297 (373)
T ss_pred             hcCCCeecCCCccccccccccccCCCcccc-CCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            11111 00000        000    0011 1257777778999999999999999887  8899999999999988643

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.94  E-value=7.9e-25  Score=214.31  Aligned_cols=267  Identities=16%  Similarity=0.088  Sum_probs=199.4

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |-+...++.++.+.+++.++++....++     ..+....+..+++++.+++++|....    ..+++|+|+|+++..++
T Consensus        27 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~----~~v~~t~g~t~~l~~~~  102 (406)
T PRK09295         27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA----EELVFVRGTTEGINLVA  102 (406)
T ss_pred             EeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC----CeEEEeCCHHHHHHHHH
Confidence            4444455666778888887775422111     11234456666789999999998421    24899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++....         -..+++|++++.+|++    +...++..|++++.+|++++ +.+|+++|+++++++|++|++++
T Consensus       103 ~~~~~~~---------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~l~~  172 (406)
T PRK09295        103 NSWGNSN---------VRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPALFDERTRLLAITH  172 (406)
T ss_pred             HHhhhhc---------CCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CCCCHHHHHHhcCCCcEEEEEec
Confidence            7653210         0124689999998875    45566778999999999864 78999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ++|+||.+.|+++|+++|+++      ++++++|++|+.+..       ++++...++|++++|+|| +++|.|+|++++
T Consensus       173 ~~n~tG~~~~~~~i~~~~~~~------~~~vivD~a~~~g~~-------~~~~~~~~~D~~~~s~~K-~~gp~G~G~l~~  238 (406)
T PRK09295        173 VSNVLGTENPLAEMIALAHQH------GAKVLVDGAQAVMHH-------PVDVQALDCDFYVFSGHK-LYGPTGIGILYV  238 (406)
T ss_pred             chhcccccCCHHHHHHHHHHc------CCEEEEEcccccCcc-------ccCchhcCCCEEEeehhh-ccCCCCcEEEEE
Confidence            999999999999999999999      999999999986544       234444579999999999 457999999998


Q ss_pred             eCCCCcccccccccCccCCC---------C--------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHH
Q 017569          291 RTKDDLPDELVFHINYLGSD---------Q--------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKL  351 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~---------~--------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~  351 (369)
                      +++ .+ ..+.   ++.++.         .        ..+ ..||++....+++..+++.+...|++.+  +..+++++
T Consensus       239 ~~~-~~-~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~r~-e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  312 (406)
T PRK09295        239 KEA-LL-QEMP---PWEGGGSMIATVSLTEGTTWAKAPWRF-EAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHY  312 (406)
T ss_pred             chH-hH-hhCC---CcccCCceeeeeecCCccccCCchhhc-CCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            754 21 1111   111100         0        011 2478988889999999999988888877  88899999


Q ss_pred             HHHHHHhcC
Q 017569          352 SSFFVIHSS  360 (369)
Q Consensus       352 l~~~L~~~g  360 (369)
                      +++.|.+.+
T Consensus       313 l~~~l~~~~  321 (406)
T PRK09295        313 ALSQLESVP  321 (406)
T ss_pred             HHHHHhcCC
Confidence            999998765

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.94  E-value=7.3e-25  Score=214.19  Aligned_cols=264  Identities=17%  Similarity=0.111  Sum_probs=198.7

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCCC-----CcchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCCchHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~-----~~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      |.+...++.++.+.+++.++++....++..     +....+..+++++.+++++|+ ++     ..+++|+|+|+++.++
T Consensus        23 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~~i~~~~~~t~~i~~~   97 (401)
T PRK10874         23 LDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA-----KNIVWTRGTTESINLV   97 (401)
T ss_pred             EeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC-----CEEEEECCHHHHHHHH
Confidence            444444556677888888877543322211     133456667889999999999 43     3488999999999988


Q ss_pred             HHHHHHH-HHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEE
Q 017569          134 GLAFKRK-WQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       134 l~~~~~~-~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      +.++... +          ..+++|++++++|++    +...++..|++++.+|++.+ +.+|+++++++++++|++|++
T Consensus        98 ~~~~~~~~~----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~t~lv~i  166 (401)
T PRK10874         98 AQSYARPRL----------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGAD-RLPDVDLLPELITPRTRILAL  166 (401)
T ss_pred             HHHhhhccC----------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCC-CcCCHHHHHHhcCcCcEEEEE
Confidence            8876321 1          124689999999976    45667788999999999764 899999999999999999999


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ++++|+||.+.|+++|+++|+++      ++++++|++|+.+..+       .++...++|.++.++||+ ++|.|+|++
T Consensus       167 ~~~~n~tG~~~~~~~i~~l~~~~------g~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~-~gp~G~G~l  232 (401)
T PRK10874        167 GQMSNVTGGCPDLARAITLAHQA------GMVVMVDGAQGAVHFP-------ADVQALDIDFYAFSGHKL-YGPTGIGVL  232 (401)
T ss_pred             eCCcccccCcCCHHHHHHHHHHc------CCEEEEECCccccccc-------CCchhcCCCEEEEecccc-cCCCccEEE
Confidence            99999999999999999999999      9999999999754442       233334699999999995 579999999


Q ss_pred             EEeCCCCcccccccccCccCCC----------------CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHH
Q 017569          289 VWRTKDDLPDELVFHINYLGSD----------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKK  350 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~----------------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~  350 (369)
                      +++++ .+. .+.   .+.++.                ...+ ..||.+....+++..++..+...|+..+  ++.++++
T Consensus       233 ~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~  306 (401)
T PRK10874        233 YGKSE-LLE-AMS---PWQGGGKMLTEVSFDGFTPQSAPWRF-EAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLAT  306 (401)
T ss_pred             EEchH-HHh-cCC---CeecCCcceEeeccCccCCCCChhhc-cCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            98653 221 111   111110                0011 1378888788999999999888888777  8888999


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      ++++.|+++
T Consensus       307 ~l~~~l~~~  315 (401)
T PRK10874        307 LAEDALAKL  315 (401)
T ss_pred             HHHHHHhcC
Confidence            999999886

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.94  E-value=1.2e-24  Score=210.53  Aligned_cols=268  Identities=15%  Similarity=0.031  Sum_probs=203.2

Q ss_pred             ccCCChHHHHHHHHHHhcc---CC--CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINK---NY--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~---n~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (369)
                      .+++.++.+.+.+.+.+..   |+  ..+..+....++.+++++.+++++|++++    ...++++|+|+++..++..+.
T Consensus         7 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~----~~v~~~~~~t~a~~~~~~~l~   82 (371)
T PF00266_consen    7 GTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD----EEVVFTSNGTEALNAVASSLL   82 (371)
T ss_dssp             SS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc----cccccccccchhhhhhhhccc
Confidence            3445667788888877543   32  11223345677778999999999999962    348899999999999988886


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ..+.          .+++|+++...|++..    ..++..|++++.++.+.+ +.+|+++++++|++++++|++++.+|.
T Consensus        83 ~~~~----------~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~-~~~~~~~~~~~l~~~~~lv~~~~~~~~  151 (371)
T PF00266_consen   83 NPLK----------PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG-GSLDLEDLEEALNPDTRLVSISHVENS  151 (371)
T ss_dssp             HHGT----------TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT-SSCSHHHHHHHHHTTESEEEEESBETT
T ss_pred             cccc----------cccccccccccccccccccccccccchhhhcccccccc-chhhhhhhhhhhccccceEEeeccccc
Confidence            5321          2468999999998866    444567999999999875 799999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      +|.+.|+++|+++|+++      ++++++|++++.+..       ++++...++|.+++++|| +++|+|+|+++++++ 
T Consensus       152 tG~~~pi~~I~~~~~~~------~~~~~vD~~~~~g~~-------~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~-  216 (371)
T PF00266_consen  152 TGVRNPIEEIAKLAHEY------GALLVVDAAQSAGCV-------PIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPE-  216 (371)
T ss_dssp             TTBBSSHHHHHHHHHHT------TSEEEEE-TTTTTTS-------S--TTTTTESEEEEESTS-TTSSSTEEEEEEEHH-
T ss_pred             ccEEeeeceehhhhhcc------CCceeEechhccccc-------cccccccccceeeecccc-cCCCCchhhheehhh-
Confidence            99999999999999999      999999999997665       356666689999999999 889999999999874 


Q ss_pred             Ccccccc-cccCccC------------CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          295 DLPDELV-FHINYLG------------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       295 ~~~~~~~-~~~~y~~------------~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .. +.+. ....+..            .....+ ..||.+....+++..+++.+...|++++  +..++++++.+.|.+.
T Consensus       217 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~  294 (371)
T PF00266_consen  217 AI-ERLRPAKPGGGYLDFPSLQEYGLADDARRF-EGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL  294 (371)
T ss_dssp             HH-HHHHTSSSSSSTTTHHHHHHHCHHSTTTGS-SSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hh-hccccccccccccccccchhcccccccccc-cccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC
Confidence            11 1110 0111100            000111 1478888888999999999988899988  9999999999999998


Q ss_pred             CCCc
Q 017569          360 SYFY  363 (369)
Q Consensus       360 g~~~  363 (369)
                      +...
T Consensus       295 ~~~~  298 (371)
T PF00266_consen  295 PGIE  298 (371)
T ss_dssp             TTEE
T ss_pred             Ccee
Confidence            7643

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.94  E-value=1.5e-24  Score=215.02  Aligned_cols=311  Identities=14%  Similarity=0.094  Sum_probs=213.4

Q ss_pred             cccccccccchhH--hhhCCCCCCCCCCCCHHHHHHHHHHhhhhcC----CCCccccccccCCChH-HHHHHHHH--Hhc
Q 017569           11 REILSSTFASRYV--RAAIPRFKMPDNSMPKEAAYQVINDELMLDG----NPRLNLASFVTTWMEP-ECDKLVMA--SIN   81 (369)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~----~p~~~l~~~~~~~~~~-~v~~~~~~--~~~   81 (369)
                      -++|+++|+.+|-  +... ..++|+.+ +..++++.+.+....+.    ++ .+++.+.+....| .+.+....  .+.
T Consensus        21 ~~~~~~~~~~~p~~~~~~~-~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~lg~g~~~~~~p~~~~~~~~~~~~~~   97 (447)
T PRK00451         21 VKSIDELFADIPEELRLKR-PLDLPPGL-SEMELLRHLRELAAKNKTAEEYP-SFLGAGAYDHYIPAVVDHIISRSEFYT   97 (447)
T ss_pred             CCCHHHHHHhCCHHHHhCC-CCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCc-ccCcccccCCcCcHHHHHHHhchhHHH
Confidence            3567788877774  2222 34789875 99999999988764332    33 2355555544333 34444322  221


Q ss_pred             c-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec
Q 017569           82 K-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG  160 (369)
Q Consensus        82 ~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s  160 (369)
                      . ++..+..+++..+...+..+++++++|++.+     .+.+|+||++++..++.+++..            .+++|+++
T Consensus        98 ~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~-----~v~~~~g~t~~~~~~~~a~~~~------------~g~~Vlv~  160 (447)
T PRK00451         98 AYTPYQPEISQGTLQAIFEYQTMICELTGMDVA-----NASMYDGATALAEAALMAVRIT------------KRKKVLVS  160 (447)
T ss_pred             hcCCCCCccchHHHHHHHHHHHHHHHHhCCCcc-----eEEecCcHHHHHHHHHHHHHhc------------CCCEEEEe
Confidence            1 2323344667777777888999999999862     4889999998887766665321            14689999


Q ss_pred             CCCcchHHHHHhh----hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccC
Q 017569          161 ANVQVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG  236 (369)
Q Consensus       161 ~~~h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~  236 (369)
                      ++.|+++..+++.    .|++++.+|++++  .+|+++|++++++++++|+++++ |+||.++|+++|+++|+++     
T Consensus       161 ~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~--~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~-----  232 (447)
T PRK00451        161 GAVHPEYREVLKTYLKGQGIEVVEVPYEDG--VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAG-----  232 (447)
T ss_pred             CccCHHHHHHHHHHHHhCCcEEEEecCCCC--CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHC-----
Confidence            9999998887765    5899999998863  89999999999999999999998 8899999999999999999     


Q ss_pred             CCceEEe--ecccccccccccCCCccccccCCCCcEEEEcCccC----CCCCCCeEEEEEeCCCCccccccc--------
Q 017569          237 WDTPIHV--DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY----GLVYAGVGWVVWRTKDDLPDELVF--------  302 (369)
Q Consensus       237 ~~~~l~v--D~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~----l~~p~g~g~l~~~~~~~~~~~~~~--------  302 (369)
                       ++|+++  |.+..+ ..   .+     ....++|.++.++|||    .++++++|+++++++ ... .+..        
T Consensus       233 -~~~~iv~~d~~~~g-~~---~~-----~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~-~~~-~~~~~~~g~~~~  300 (447)
T PRK00451        233 -GALFIVGVDPVSLG-LL---KP-----PGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKK-LVR-QMPGRLVGETVD  300 (447)
T ss_pred             -CCEEEEEcChHHhc-cC---CC-----cccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHH-HHh-hCCCCEeeeecc
Confidence             999998  654322 11   11     1234899999999998    345568999988653 221 1100        


Q ss_pred             ---ccCcc----------CCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          303 ---HINYL----------GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       303 ---~~~y~----------~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                         ...|.          .... .....+++....+++.+.+++.++.+|++++  +..+++++++++|++.+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~  374 (447)
T PRK00451        301 ADGKRGFVLTLQAREQHIRREK-ATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGV  374 (447)
T ss_pred             cCCCeeeEeecccccccccccc-ccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence               00010          0000 0011133333334666677888899999998  9999999999999988643

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.93  E-value=4.9e-24  Score=208.45  Aligned_cols=270  Identities=17%  Similarity=0.090  Sum_probs=197.2

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCC-----CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |.....+++++.+.+++.+++.....++.     ......+..+++++.+++++|++..    ..+++|+|+++++.+++
T Consensus        22 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~----~~v~~~~g~t~~l~~~~   97 (403)
T TIGR01979        22 LDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD----EEIVFTRGTTESINLVA   97 (403)
T ss_pred             EeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC----CeEEEeCCHHHHHHHHH
Confidence            44444445567778888777654322211     1123344556888899999999831    24899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++....         -..+++|+++++.|++    +...++..|++++.++++++ +.+|+++|+++++++|++|++++
T Consensus        98 ~~~~~~~---------~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~~~~lv~~~~  167 (403)
T TIGR01979        98 YSWGDSN---------LKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDD-GTLDLDDLEKLLTEKTKLVAITH  167 (403)
T ss_pred             HHhhhhc---------CCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCC-CCCCHHHHHHHhccCCeEEEEEc
Confidence            7653210         0124689999998877    34566778999999999864 89999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ++|+||.+.|+++|+++|+++      ++++|+|++|+.+..+       .++...++|+++.++||++ +|.|+|++++
T Consensus       168 ~~~~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~-gp~G~g~l~~  233 (403)
T TIGR01979       168 VSNVLGTVNPVEEIAKLAHQV------GAKVLVDGAQAVPHMP-------VDVQALDCDFYVFSGHKMY-GPTGIGVLYG  233 (403)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEchhhcCccc-------cCccccCCCEEEEeccccc-CCCCceEEEE
Confidence            999999999999999999999      9999999999865442       3344347999999999975 7999999998


Q ss_pred             eCCCCccccccccc-Cc-----cCCCC-------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHH
Q 017569          291 RTKDDLPDELVFHI-NY-----LGSDQ-------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       291 ~~~~~~~~~~~~~~-~y-----~~~~~-------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~  355 (369)
                      +++ .. +.+.... .+     .....       ..+ ..||++....++++.+++.+...|++.+  ++.+++++++++
T Consensus       234 ~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~  310 (403)
T TIGR01979       234 KEE-LL-EQMPPFLGGGEMIAEVSFEETTYNEAPHKF-EAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALER  310 (403)
T ss_pred             chH-HH-hcCCCeecCCCceeecccCccccCCChhhc-CCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            753 22 1111000 00     00000       011 1367878778999999999877788877  999999999999


Q ss_pred             HHhcC
Q 017569          356 VIHSS  360 (369)
Q Consensus       356 L~~~g  360 (369)
                      |++++
T Consensus       311 l~~~~  315 (403)
T TIGR01979       311 LGEIP  315 (403)
T ss_pred             HhcCC
Confidence            98874

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.93  E-value=8.2e-24  Score=205.50  Aligned_cols=261  Identities=15%  Similarity=0.076  Sum_probs=187.5

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC---C--cchHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCCchHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE---Y--PVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~---~--~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (369)
                      +++.++.+.+++.++++....++..   +  .....++++ ++.+.+.+|+ ++     ..+++|+|+++++.+++.++.
T Consensus         8 ~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a-~~~~~~~~~~~~~-----~~i~~t~g~teal~~~~~~~~   81 (382)
T TIGR03403         8 TTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEA-LDKLYKGINARDL-----DDIIITSCATESNNWVLKGVY   81 (382)
T ss_pred             CCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHH-HHHHHHHcCcCCC-----CeEEEeCCHHHHHHHHHHHHH
Confidence            4455678899988887653333321   1  233455544 4445556776 33     348999999999999888763


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ....       ....+++|+++...|+++....   +..|++++.||++++ +.+|+++|++++++++++|++++++|+|
T Consensus        82 ~~~~-------~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~-g~~d~~~l~~~i~~~t~lv~~~~~~n~t  153 (382)
T TIGR03403        82 FDEI-------LKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ-GTITAEQVREAITEKTALVSVMWANNET  153 (382)
T ss_pred             Hhhc-------ccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC-CCCCHHHHHHhcccCCeEEEEEcccCCC
Confidence            2100       0011357999999998876654   457999999999865 8999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |.+.|+++|.++|+++      |+++|+|++++.+..       +.++...++|++++++||| ++|+|+|++++|+...
T Consensus       154 G~~~~~~~I~~la~~~------g~~~ivD~a~~~g~~-------~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~vr~~~~  219 (382)
T TIGR03403       154 GMIFPIKEIGEICKER------GVLFHTDAVQAIGKI-------PVDVQKAGVDFLSFSAHKF-HGPKGVGGLYIRKGVE  219 (382)
T ss_pred             ccccCHHHHHHHHHHc------CCEEEEechhhcCCC-------ccCccccCCCEEEEcchhh-CCCCceEEEEECCCCC
Confidence            9999999999999999      999999999886544       2344445899999999998 5799999999987532


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.      +.+.++........||.+....+++..+++.+. ++++..  +..++++++.++|.+.+
T Consensus       220 ~~------p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~  279 (382)
T TIGR03403       220 LT------PLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLAN-EYLDFEKSHVRRLRDRLEDALLELP  279 (382)
T ss_pred             CC------CcccCCCCCCCcccCCcChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            21      111111111111237777776778888887663 345555  88999999999998764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.93  E-value=3.4e-24  Score=208.51  Aligned_cols=257  Identities=13%  Similarity=0.030  Sum_probs=184.0

Q ss_pred             CChHHHHHHHHHHhccCCC----CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYV----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (369)
                      ++++.+.+++.++......    .+..........+++++.+++++|++.       ..+++|+++|+..++.++..+  
T Consensus        31 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~-------~~~~~g~t~a~~~al~~l~~~--  101 (387)
T PRK09331         31 ILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE-------ARVTHGAREGKFAVMHSLCKK--  101 (387)
T ss_pred             CCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhcCC--
Confidence            4567788888877643111    111111222345567777999999975       678999999999988887432  


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec--cCCccccCHHHHHHHHhh-------cCcEEEEeeCCC
Q 017569          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDE-------NTICVAAILGST  213 (369)
Q Consensus       143 ~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~  213 (369)
                                 +++|+++.++|++...+++..|++++.+|+  ++ ++.+|+++|++++++       ++++|+++++++
T Consensus       102 -----------gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~  169 (387)
T PRK09331        102 -----------GDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP-EYKITPEAYAEKIEEVKEETGKPPALALLTHVDG  169 (387)
T ss_pred             -----------CCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc-CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCC
Confidence                       478999999999998889999999999998  44 488999999999974       588999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ++|.+.|+++|+++|+++      ++++|+|+||+.+..|       ++....++|.++.++|||+++|.|.|+++++++
T Consensus       170 ~tG~~~~l~~I~~la~~~------g~~livD~a~~~g~~~-------~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~  236 (387)
T PRK09331        170 NYGNLADAKKVAKVAHEY------GIPFLLNGAYTVGRMP-------VDGKKLGADFIVGSGHKSMAASAPSGVLATTEE  236 (387)
T ss_pred             CCcccccHHHHHHHHHHc------CCEEEEECCcccCCcC-------CCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence            999999999999999999      9999999999976553       222234789999999999999999999888642


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhc-CC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHS-SY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~-g~  361 (369)
                       ...........|..... . .+.++.+...++.+++++..+-.. ...+ +..++++++++.|+++ |+
T Consensus       237 -~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~l~g~  302 (387)
T PRK09331        237 -YADKVFRTSRKFGVKEV-E-LLGCTLRGAPLVTLMASFPHVVER-VKRWDEEVKKARWFVDELEKIEGF  302 (387)
T ss_pred             -HHhhcccccCCCcccce-e-eeceecCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCE
Confidence             22211111111211100 0 011222223456666666655322 3344 7889999999999998 54

>PRK02948 cysteine desulfurase; Provisional

Probab=99.93  E-value=1.2e-23  Score=204.32  Aligned_cols=261  Identities=15%  Similarity=0.059  Sum_probs=192.6

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCC----CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ++++++.+.+++.+++.....++.    .+....++.+++++.+++++|.++     ..+++++|+++++..++.++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~~   83 (381)
T PRK02948          9 TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEE-----QGIYFTSGGTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCcHHHHHHHHHHHHHHh
Confidence            445667788888877754322222    122345667789999999999875     24889999999999988887542


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHH---HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      +         ...+++|+++...|+++...   ++..|++++.+|++++ +.+|+++|++++++++++|++++++|+||.
T Consensus        84 ~---------~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~  153 (381)
T PRK02948         84 L---------PQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKS-GLIRLVDLERAITPDTVLASIQHANSEIGT  153 (381)
T ss_pred             c---------cCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCC-CCCCHHHHHHhcCCCCEEEEEECCcCCcEe
Confidence            1         01246899999899886654   4556999999999864 889999999999988999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|.++|+++      ++++|+|++++.+..       +.++...++|+++.++||++ +|.|.|+++++++....
T Consensus       154 ~~~~~~I~~l~~~~------~~~vivD~~~~~g~~-------~~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~  219 (381)
T PRK02948        154 IQPIAEIGALLKKY------NVLFHSDCVQTFGKL-------PIDVFEMGIDSLSVSAHKIY-GPKGVGAVYINPQVRWK  219 (381)
T ss_pred             ehhHHHHHHHHHHc------CCEEEEEChhhcccc-------ccCcccCCCCEEEecHHhcC-CCCcEEEEEEcCCCCCC
Confidence            99999999999999      999999988775433       23344447999999999975 79999999987542111


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..      +.+.........+|.+....+++..+++.+. ++.++.  +..++.++++++|+++|+
T Consensus       220 ~~------~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~  278 (381)
T PRK02948        220 PV------FPGTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTLPL  278 (381)
T ss_pred             Cc------ccCCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            10      0011111111236676776777778887653 345555  899999999999999875

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.93  E-value=6.3e-24  Score=209.08  Aligned_cols=270  Identities=16%  Similarity=0.057  Sum_probs=196.7

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCC---CCC--cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDM---DEY--PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~---~~~--~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |....+++.++.+.+++.+++.....++   ..+  ....+..+++++.+++++|++..    ..+++|+|+|+++..++
T Consensus        36 Ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~----~~v~~t~g~t~al~~i~  111 (424)
T PLN02855         36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS----REIVFTRNATEAINLVA  111 (424)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC----CEEEEeCCHHHHHHHHH
Confidence            4444455566778888877764322221   111  22334456788999999999631    24899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++....         -..+++|+++.+.|++    +...++..|++++.+|++++ +.+|+++++++++++|++|++++
T Consensus       112 ~~~~~~~---------~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~-~~~~~~~l~~~i~~~t~lv~i~~  181 (424)
T PLN02855        112 YTWGLAN---------LKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD-EVLDVEQLKELLSEKTKLVATHH  181 (424)
T ss_pred             HHhhhhc---------CCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC-CCcCHHHHHHHhccCceEEEEeC
Confidence            6542100         0114689999998876    45556778999999999765 57999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ++|+||.+.|+++|+++|+++      ++++++|++|+.+..       ++++...++|.++.++||+ ++|.|+|++++
T Consensus       182 ~~n~tG~~~~~~~I~~l~~~~------g~~vivD~a~~~g~~-------~~~~~~~~~d~~~~s~~K~-~gp~G~G~l~~  247 (424)
T PLN02855        182 VSNVLGSILPVEDIVHWAHAV------GAKVLVDACQSVPHM-------PVDVQTLGADFLVASSHKM-CGPTGIGFLWG  247 (424)
T ss_pred             ccccccccCCHHHHHHHHHHc------CCEEEEEhhhhcCCc-------CCCchhcCCCEEEeecccc-cCCCccEEEEE
Confidence            999999999999999999999      999999999975443       2344444789999999995 57999999998


Q ss_pred             eCCCCccccccccc--------CccCC-----CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHH
Q 017569          291 RTKDDLPDELVFHI--------NYLGS-----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       291 ~~~~~~~~~~~~~~--------~y~~~-----~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~  355 (369)
                      +++ .+. .+....        .|...     ....+ ..||++....++++.+++.+...|++++  ++.++++++++.
T Consensus       248 ~~~-~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~r~-e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~  324 (424)
T PLN02855        248 KSD-LLE-SMPPFLGGGEMISDVFLDHSTYAPPPSRF-EAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEK  324 (424)
T ss_pred             chh-hhh-cCCCEecCCCceeeeecCccccCCChhhc-cCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            754 221 111000        00000     00111 2478888889999999999988899888  899999999999


Q ss_pred             HHhcC
Q 017569          356 VIHSS  360 (369)
Q Consensus       356 L~~~g  360 (369)
                      |++++
T Consensus       325 L~~~~  329 (424)
T PLN02855        325 LSSVP  329 (424)
T ss_pred             HhcCC
Confidence            98763

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.93  E-value=6.3e-24  Score=207.23  Aligned_cols=269  Identities=13%  Similarity=0.058  Sum_probs=194.7

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      |....++++++.+.+++.+++......    |....+..++.+++++.+++++|++++     ..++++|+++++..++.
T Consensus        21 l~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~-----~v~~~~~~t~~l~~~~~   95 (397)
T TIGR01976        21 FDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP-----EVVFGANATSLTFLLSR   95 (397)
T ss_pred             ecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC-----eEEEeCCHHHHHHHHHH
Confidence            444445566677888888777543221    212234556778899999999999752     38899999999877776


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++...+          ..+++|+++++.|++..    ..++..|++++.++++++++.+|+++|++++++++++|+++++
T Consensus        96 ~~~~~~----------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~  165 (397)
T TIGR01976        96 AISRRW----------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAA  165 (397)
T ss_pred             HHHhcC----------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCC
Confidence            653211          12468999999997743    5567789999999998644899999999999999999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      +|++|.+.|+++|+++|+++      ++++++|+++..+..       ..++...++|.++.++|||+ +| +.|+++++
T Consensus       166 ~n~tG~~~~~~~i~~~~~~~------~~~~ivD~a~~~~~~-------~~~~~~~~~d~~~~s~~K~~-g~-~~G~l~~~  230 (397)
T TIGR01976       166 SNTLGSIVDLAAITELVHAA------GALVVVDAVHYAPHG-------LIDVQATGADFLTCSAYKFF-GP-HMGILWGR  230 (397)
T ss_pred             CCCCCccCCHHHHHHHHHHc------CCEEEEehhhhcccc-------CCCHHHcCCCEEEEechhhc-CC-ceEEEEEc
Confidence            99999999999999999999      999999999864332       23333347899999999997 44 48998886


Q ss_pred             CCCCcccccc-cccCccCCC-CCCccccCCcchhHHHHHHHHHHHhcHhh--------------HHHH--HhhHHHHHHH
Q 017569          292 TKDDLPDELV-FHINYLGSD-QPTFTLNFSKGSSQIIAQYYQFIRLGFEV--------------IPSF--CCVDHKKLSS  353 (369)
Q Consensus       292 ~~~~~~~~~~-~~~~y~~~~-~~~~~l~~tr~~~~~l~~~~~l~~lg~~G--------------~~~~--~~~~~a~~l~  353 (369)
                      ++ .+. .+. ....|.... ...+ ..||++...++++..+++.+...|              ++++  +..+++++++
T Consensus       231 ~~-~~~-~l~~~~~~~~~~~~~~~~-~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  307 (397)
T TIGR01976       231 PE-LLM-NLPPYKLTFSYDTGPERF-ELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLL  307 (397)
T ss_pred             HH-HHh-hCCCccccCccCCCcchh-cCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            53 221 111 111121111 1111 247888888888989998885554              4555  7888999999


Q ss_pred             HHHHhcCC
Q 017569          354 FFVIHSSY  361 (369)
Q Consensus       354 ~~L~~~g~  361 (369)
                      +.|++++.
T Consensus       308 ~~L~~~~~  315 (397)
T TIGR01976       308 VGLSDLPG  315 (397)
T ss_pred             HHHhcCCC
Confidence            99998773

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=4.4e-24  Score=206.95  Aligned_cols=272  Identities=15%  Similarity=0.107  Sum_probs=202.6

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+.+.|..+ ++.+.+++.++++.....|....|..+|++++.+++.+.+|.+.+.  ...+++|+|+++|++.++
T Consensus        29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~--~~eiivt~Ga~~al~~~~  106 (393)
T COG0436          29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP--EEEIIVTAGAKEALFLAF  106 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEEeCCHHHHHHHHH
Confidence            4578888888755 4668888888887653244577899999999999999999976532  234999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC--CccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      .++.++             +++|++++|.|++|.....+.|+.+..+|++.  ++|.+|+++|+++++++|++|++++|+
T Consensus       107 ~a~~~p-------------GDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~  173 (393)
T COG0436         107 LALLNP-------------GDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPN  173 (393)
T ss_pred             HHhcCC-------------CCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCC
Confidence            998774             57899999999999999999999999999853  369999999999999999999999999


Q ss_pred             CCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCC--CcEEEEc-CccC-CCCCCCe
Q 017569          213 TLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL--VKSINVS-GHKY-GLVYAGV  285 (369)
Q Consensus       213 ~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~--~Dsi~~~-~hK~-l~~p~g~  285 (369)
                      ||||++   +.+++|+++|+++      ++|+++|++|..+...  ...+........  -..++++ ..|. .+++|++
T Consensus       174 NPTGav~~~~~l~~i~~~a~~~------~i~ii~DEiY~~l~yd--~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv  245 (393)
T COG0436         174 NPTGAVYSKEELKAIVELAREH------DIIIISDEIYEELVYD--GAEHPSILELAGARDRTITINSFSKTYGMTGWRI  245 (393)
T ss_pred             CCcCcCCCHHHHHHHHHHHHHc------CeEEEEehhhhhcccC--CCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence            999998   4589999999999      9999999999987652  101111222222  2355554 4454 5678999


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh----hHHHH--HhhHHHHHHHHHHHhc
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE----VIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~----G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |+++..+++.. ..+..-..+            +-.+...+.+.++...|...    .+..+  ...+..+.+.+.|.+.
T Consensus       246 G~~v~~~~~l~-~~~~~~~~~------------~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~  312 (393)
T COG0436         246 GWVVGPPEELI-AALRKLKSY------------LTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI  312 (393)
T ss_pred             eEeecChHHHH-HHHHHHHHh------------cccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998643332 221100111            11123456677777777432    33333  5888889999999988


Q ss_pred             CCCc
Q 017569          360 SYFY  363 (369)
Q Consensus       360 g~~~  363 (369)
                      +.++
T Consensus       313 ~g~~  316 (393)
T COG0436         313 GGLS  316 (393)
T ss_pred             CCee
Confidence            7443

>PRK14012 cysteine desulfurase; Provisional

Probab=99.93  E-value=1.1e-23  Score=206.14  Aligned_cols=262  Identities=17%  Similarity=0.093  Sum_probs=188.2

Q ss_pred             cCCChHHHHHHHHHHhc--cCCCCCCCC--c---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASIN--KNYVDMDEY--P---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~--~n~~~~~~~--~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +++.++.+.+++.+++.  ....++...  .   ...+..+++++++++++|++++     .+++++|||+|+.+++.++
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-----~v~~~~g~t~al~~~l~~l   86 (404)
T PRK14012         12 TTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-----EIVFTSGATESDNLAIKGA   86 (404)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-----eEEEeCCHHHHHHHHHHHH
Confidence            44566778888888775  333222210  0   1124455778889999999762     3899999999999998876


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh---hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ...+.         ..+++|++++.+|+++...++.   .|++++.++++++ +.+|+++|+++|++++++|++++++|+
T Consensus        87 ~~~~~---------~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~-g~~d~~~l~~~i~~~t~lv~~~~~~n~  156 (404)
T PRK14012         87 AHFYQ---------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSN-GIIDLEKLEAAMRDDTILVSIMHVNNE  156 (404)
T ss_pred             HHhhc---------CCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCC-CcCCHHHHHHhcCCCCEEEEEECcCCC
Confidence            53210         1246899999999887665544   4999999998864 899999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      ||.+.|+++|.++|+++      ++++|+|+|++.+..+       +++...++|++++++||++ +|.|+|++++++..
T Consensus       157 tG~~~~~~~I~~la~~~------g~~vivD~a~~~g~~~-------~~~~~~~~D~~~~s~~K~~-gp~g~G~l~~~~~~  222 (404)
T PRK14012        157 IGVIQDIAAIGEICRER------GIIFHVDAAQSVGKVP-------IDLSKLKVDLMSFSAHKIY-GPKGIGALYVRRKP  222 (404)
T ss_pred             ccchhhHHHHHHHHHHc------CCEEEEEcchhcCCcc-------cCcccCCCCEEEEehhhcc-CCCceEEEEEecCC
Confidence            99999999999999999      9999999999875542       2333347999999999955 78899999998653


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .. .   ..+.+.++........||.+....+++..++..+. .++.++  +..++++++.+.|++.+
T Consensus       223 ~~-~---~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~  285 (404)
T PRK14012        223 RV-R---LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIE  285 (404)
T ss_pred             CC-C---CCceecCCCccCCccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            32 1   11112222211101125555555566666666553 344444  88999999999998754

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=2.9e-24  Score=209.85  Aligned_cols=257  Identities=11%  Similarity=-0.027  Sum_probs=194.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..++.+.+++....    .++ .++...++.+++++++++++|++.+    ...+++++|++++..++....++      
T Consensus        19 ~~~~~V~~a~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~g~~~~----~~vi~~~~gt~a~~~a~~~~~~~------   83 (401)
T PLN02409         19 NIPERVLRAMNRPN----EDH-RSPAFPALTKELLEDVKYIFKTKSG----TPFIFPTTGTGAWESALTNTLSP------   83 (401)
T ss_pred             CCCHHHHHHhcCCC----CCC-CCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEeCCcHHHHHHHHHhcCCC------
Confidence            33466666654433    111 3567788999999999999999752    24788889999988777665331      


Q ss_pred             hcCCCCCCCeEEecCCCcchH--HHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCCC
Q 017569          147 EQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (369)
                             +++|+++++.|++.  ...++.+|++++.++.+.+ ..+|+++|++++++    ++++|++++++|+||.+.|
T Consensus        84 -------Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~  155 (401)
T PLN02409         84 -------GDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWG-QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND  155 (401)
T ss_pred             -------CCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCC-CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC
Confidence                   46899999888765  4677888999999998764 45899999999986    7899999999999999999


Q ss_pred             HHHHHHH--HHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          221 VKLLHDL--LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       221 l~~I~~l--~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      +++|+++  |+++      ++++++|++++.+..       ++++...++|.++.++|||+++|.|+|+++++++ .+. 
T Consensus       156 ~~~i~~l~~~~~~------g~~~vvD~v~s~g~~-------~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~-~~~-  220 (401)
T PLN02409        156 LAGVRKLLDCAQH------PALLLVDGVSSIGAL-------DFRMDEWGVDVALTGSQKALSLPTGLGIVCASPK-ALE-  220 (401)
T ss_pred             HHHHHHHHhhhcc------CcEEEEEcccccCCc-------cccccccCccEEEEcCccccCcCCCcceeEECHH-HHH-
Confidence            9999999  9999      999999999886544       2444445899999999999999999999998754 221 


Q ss_pred             cccc---ccCccC------CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          299 ELVF---HINYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       299 ~~~~---~~~y~~------~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+..   ...|..      .........+|.+....+++..+++.+..+|++.+  ++.++++++++.|+++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~  294 (401)
T PLN02409        221 ASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGL  294 (401)
T ss_pred             HHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1110   111111      00000011356777778888899999888899988  999999999999998873

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.93  E-value=2.7e-24  Score=206.80  Aligned_cols=257  Identities=14%  Similarity=0.071  Sum_probs=190.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.++.+.+++.+.+.    . ..++...++.+++++++++++|++..    ...+++.||++|+..++.++..+      
T Consensus         9 ~~~~~v~~a~~~~~~----~-~~~~~~~~~~~~~~~~la~~~g~~~~----~~~~~~~~~t~al~~~~~~~~~~------   73 (356)
T cd06451           9 NVPPRVLKAMNRPML----G-HRSPEFLALMDEILEGLRYVFQTENG----LTFLLSGSGTGAMEAALSNLLEP------   73 (356)
T ss_pred             CCCHHHHHHhCCCcc----C-CCCHHHHHHHHHHHHHHHHHhcCCCC----CEEEEecCcHHHHHHHHHHhCCC------
Confidence            334666666643321    1 13556777788999999999999542    23678888999998888876431      


Q ss_pred             hcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                             +++|+++.+.|++  +...++..|++++.+|++++ +.+|++++++++++ ++++|++++++|++|.+.|+++
T Consensus        74 -------g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~  145 (356)
T cd06451          74 -------GDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG-EAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEG  145 (356)
T ss_pred             -------CCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC-CCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHH
Confidence                   4689888888876  56777889999999999864 79999999999987 8999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-  302 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-  302 (369)
                      |.++|+++      ++++++|++++.+..+       .++...++|.++.++|||+++|.|+|+++.+++ .. ..+.. 
T Consensus       146 i~~~a~~~------~~~li~D~~~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~-~~~~~~  210 (356)
T cd06451         146 IGALAKKH------DALLIVDAVSSLGGEP-------FRMDEWGVDVAYTGSQKALGAPPGLGPIAFSER-AL-ERIKKK  210 (356)
T ss_pred             HHHHHHhc------CCEEEEeeehhccCcc-------ccccccCccEEEecCchhccCCCCcceeEECHH-HH-HHHHhc
Confidence            99999999      9999999998754332       222223689999999999999999999998753 22 22211 


Q ss_pred             --ccCccCC-------CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 --HINYLGS-------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 --~~~y~~~-------~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                        ...|...       ....+...++.+....+++.++++.+..+|++++  ++.++++++++.|++.|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~  280 (356)
T cd06451         211 TKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGL  280 (356)
T ss_pred             CCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              1111100       0001112244445456777888888888888877  899999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.93  E-value=2.3e-23  Score=203.28  Aligned_cols=288  Identities=15%  Similarity=0.057  Sum_probs=196.2

Q ss_pred             HHHHHHHHhhhhc---CCCCccccccccCCChHH-HHHHHHHHhccCCCCCCC-----CcchHHHHHHHHHHHHHHhCCC
Q 017569           41 AAYQVINDELMLD---GNPRLNLASFVTTWMEPE-CDKLVMASINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNTP  111 (369)
Q Consensus        41 ~i~~~l~~~~~~~---~~p~~~l~~~~~~~~~~~-v~~~~~~~~~~n~~~~~~-----~~~~~~le~~~~~~la~l~g~~  111 (369)
                      +|++++..+-..+   .++..+++.+.+++.+|. +.++..++ . ....|..     +.+..++.+++++++++++|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~   80 (398)
T cd00613           3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-E-FYTAYTPYQPEISQGRLQALFELQTMLCELTGMD   80 (398)
T ss_pred             HHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc-c-CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC
Confidence            6777776643322   223356677777766554 44545444 2 2122222     5678899999999999999997


Q ss_pred             CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhc----ceeEEEeccCCc
Q 017569          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE----VELKEVKLEEGY  187 (369)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G----~~v~~v~~~~~~  187 (369)
                      .+     ...++++|+.+...++..++..          +..+++|+++++.|.++..++..+|    ++++.+|++++ 
T Consensus        81 ~~-----~v~~~~~g~~~~~~~~~~~~~~----------~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~-  144 (398)
T cd00613          81 VA-----NASLQDEATAAAEAAGLAAIRA----------YHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEG-  144 (398)
T ss_pred             cc-----ceeccCchHHHHHHHHHHHHhc----------ccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCC-
Confidence            52     2556665554444444444321          1124689999999999988888887    89999998754 


Q ss_pred             cccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCH-HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCC
Q 017569          188 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDV-KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (369)
Q Consensus       188 ~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l-~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (369)
                      +.+|+++|++++++++++|+++.++ ++|.+.|+ ++|+++|+++      ++|+|+|++++.+..+ .      .....
T Consensus       145 ~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~------g~~livD~~~~~~~~~-~------~~~~~  210 (398)
T cd00613         145 GTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSA------GALVYVDGDNLNLTGL-K------PPGEY  210 (398)
T ss_pred             CCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhc------CCEEEEEeccccccCC-C------ChHHc
Confidence            7899999999999999999999986 78999885 9999999999      9999999988653321 1      11123


Q ss_pred             CCcEEEEcCccCCCCC-----CCeEEEEEeCCCCcccccccc-cCccCC---C-------C-------C-Ccc-ccCCcc
Q 017569          267 LVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFH-INYLGS---D-------Q-------P-TFT-LNFSKG  321 (369)
Q Consensus       267 ~~Dsi~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~-~~y~~~---~-------~-------~-~~~-l~~tr~  321 (369)
                      ++|+++.++|||+ +|     ++.|++++++. .. ..+... ..+...   .       .       . ..+ ...+..
T Consensus       211 ~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~  287 (398)
T cd00613         211 GADIVVGNLQKTG-VPHGGGGPGAGFFAVKKE-LV-RFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQ  287 (398)
T ss_pred             CCCEEEeeccccC-CCCCCCCCceeEEEEhhh-hH-hhCCCCeeccccccCCCcceEEecccchhhcccccccccceecH
Confidence            6899999999998 55     67788887643 22 121110 000000   0       0       0 000 002233


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ......+|.++..++.+|++++  ++.+++++++++|+++++..
T Consensus       288 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~  331 (398)
T cd00613         288 ALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL  331 (398)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3456777888888999999887  89999999999999987653

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.92  E-value=6e-23  Score=215.38  Aligned_cols=289  Identities=10%  Similarity=-0.015  Sum_probs=209.9

Q ss_pred             CCHHHHHHHHHHhhhhc---CCCCccccccccCCChHHHHHHHH---HHhccCCCCCC-CCcchHHHHHHHHHHHHHHhC
Q 017569           37 MPKEAAYQVINDELMLD---GNPRLNLASFVTTWMEPECDKLVM---ASINKNYVDMD-EYPVTTELQNRCVNMIAHLFN  109 (369)
Q Consensus        37 ~~~~~i~~~l~~~~~~~---~~p~~~l~~~~~~~~~~~v~~~~~---~~~~~n~~~~~-~~~~~~~le~~~~~~la~l~g  109 (369)
                      .++.++++.+..+-..+   .+..+.|++ |+.-..+.+-+...   .+.+-+++.+. ..+|..++..++++++++++|
T Consensus       504 ~se~~~~r~~~~l~~~~~~~~~~~~plgs-ctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g  582 (993)
T PLN02414        504 HSEHELLRYLHRLQNKDLSLVHSMIPLGS-CTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITG  582 (993)
T ss_pred             cCHHHHHHHHHHHhhcccccccCCccCcc-cccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            67789999988876543   233344443 22211232222222   22333444443 235888899999999999999


Q ss_pred             CCCCCCCCCCeEEeCCch----HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC
Q 017569          110 TPVADDKTAVGVGTVGSS----EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE  185 (369)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt----~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~  185 (369)
                      ++.       +.++++++    +|++++++++...       .|. .++.+||+|...|.+....+.+.|++++.||+++
T Consensus       583 ~~~-------v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd-~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~  647 (993)
T PLN02414        583 FDS-------FSLQPNAGAAGEYAGLMVIRAYHLS-------RGD-HHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDA  647 (993)
T ss_pred             CCe-------EEEcCCCcHHHHHHHHHHHHHHHhc-------cCC-CCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCC
Confidence            964       88888888    8998988887542       132 1345899999999999999999999999999986


Q ss_pred             CccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc
Q 017569          186 GYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (369)
Q Consensus       186 ~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (369)
                      + +.+|+++|++++++   ++++|++++|||.+|..+|+++|+++|+++      |+.+++|+|+..+......|     
T Consensus       648 ~-G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~------Galv~vDgAq~~a~~~l~~p-----  715 (993)
T PLN02414        648 K-GNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDN------GGQVYMDGANMNAQVGLTSP-----  715 (993)
T ss_pred             C-CCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHc------CCEEEEEecCHHhccCcCCc-----
Confidence            4 89999999999995   679999999999999999999999999999      99999999986544321111     


Q ss_pred             ccCCCCcEEEEcCccCCCCCC-----CeEEEEEeCCCCcccccccc-----cCccCCCCCCccccCCcch------hHHH
Q 017569          263 FRLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFH-----INYLGSDQPTFTLNFSKGS------SQII  326 (369)
Q Consensus       263 ~~~~~~Dsi~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~-----~~y~~~~~~~~~l~~tr~~------~~~l  326 (369)
                       ...++|+++++.|||+++|.     |+|++++++. +. ..+...     ..+....  .....||++.      ..++
T Consensus       716 -~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~-p~lPg~~v~~~~~~~~r~--~~s~iGt~~~a~~g~al~l~  790 (993)
T PLN02414        716 -GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFLPSHPVVPTGGIPRPE--KTQPLGTISAAPWGSALILP  790 (993)
T ss_pred             -cccCCCEEEecCCccCCcCcccCCCCeeeEEEchh-hc-ccCCCCccccCCCccccc--CCCCcCCccchhhhhHHHHH
Confidence             23489999999999887665     5999998753 22 222111     0111100  1112366443      4567


Q ss_pred             HHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          327 AQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       327 ~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      ..|..++.+|.+|+++.  +++.+|+|++++|.+
T Consensus       791 ~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~  824 (993)
T PLN02414        791 ISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG  824 (993)
T ss_pred             HHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999988  899999999999976

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=6.8e-23  Score=197.56  Aligned_cols=255  Identities=14%  Similarity=0.059  Sum_probs=179.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCC-----CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      +..+.+.+.+.++... ...+.     .........+++++.+++++|++.       .++|+|+++++..++.++..+ 
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-------i~~~~g~t~al~~~l~~~~~~-   82 (361)
T cd06452          12 RLTPEARKALIEWGDG-YSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDE-------ARVTPGAREGKFAVMHSLCEK-   82 (361)
T ss_pred             CCCHHHHHHHHHHhcc-cCCccccccccccccCchHHHHHHHHHHHcCCce-------EEEeCCHHHHHHHHHHHhcCC-
Confidence            4457788888877632 12211     111111223355566999999853       889999999999888876432 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhh-------cCcEEEEeeCCC
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-------NTICVAAILGST  213 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~-------~~~~v~~~~~~~  213 (369)
                                  +++|+++.++|++...+++..|++++.+|++.+ ++.+|+++|++++++       ++++|++++++|
T Consensus        83 ------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n  150 (361)
T cd06452          83 ------------GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG  150 (361)
T ss_pred             ------------CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
Confidence                        468999999999988889999999999999764 369999999999873       688999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ++|.+.|+++|.++|+++      ++++|+|+||+.+..+       +.....++|.++.++||++++|.++|+++++++
T Consensus       151 ~tG~~~~~~~i~~~~~~~------~~~vivD~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~  217 (361)
T cd06452         151 NYGNLHDAKKIAKVCHEY------GVPLLLNGAYTVGRMP-------VSGKELGADFIVGSGHKSMAASAPIGVLATTEE  217 (361)
T ss_pred             CCeeeccHHHHHHHHHHc------CCeEEEECCcccCCcC-------CCHHHcCCCEEEecCCccccCCCCeEEEEECHH
Confidence            999999999999999999      9999999999865432       122223689999999999988889999887642


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhc
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~  359 (369)
                       .. ..+.....+....... .+.++.....++.+++++..+ .+.++.+ +..++++++++.|+++
T Consensus       218 -~~-~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~L~~l  280 (361)
T cd06452         218 -WA-DIVFRTSQMFKIKEVE-LLGCTLRGAPLVTLMASFPHV-KERVKRWDEEVEKARWFVAELEKI  280 (361)
T ss_pred             -HH-HHHhccccccccceee-eeccccCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence             22 2221111111110000 011233233355666666654 2335555 7788899999999998

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01814 kynureninase kynureninase

Probab=99.91  E-value=7.3e-23  Score=200.41  Aligned_cols=262  Identities=10%  Similarity=-0.026  Sum_probs=181.8

Q ss_pred             cCCChHHHHHHHHHHhcc---CC-CCCCC-CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINK---NY-VDMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~---n~-~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      .++.++.+.+++.++++.   +. ..+.. ......+.++..+ + +++|++++     ..++|+|+|+++..++.++..
T Consensus        36 ~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-----~v~~~~~~t~~l~~~~~~~~~  108 (406)
T TIGR01814        36 LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKED-----EVVVMNTLTINLHLLLASFYK  108 (406)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCC-----cEEEeCCchHHHHHHHHHhcC
Confidence            334566677777766543   11 11111 1122334444433 4 89999763     489999999999888877622


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhhhccee----EEEeccCCccccCHHHHHHHHh---hcCcEEEE
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYFEVEL----KEVKLEEGYYVMNPVKAVELVD---ENTICVAA  208 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~~G~~v----~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~  208 (369)
                      +        |  ..+.+|+++...|++...    .++..|+++    +.++.+. ++.+|++++++.++   ++|++|++
T Consensus       109 ~--------~--~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~t~lv~~  177 (406)
T TIGR01814       109 P--------T--PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPRE-EETLRLEDILDTIEKNGDDIAVILL  177 (406)
T ss_pred             C--------c--CCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCC-CCccCHHHHHHHHHhcCCCeEEEEE
Confidence            1        1  112478888899988443    445668887    4565554 37889999999884   67899999


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ++.++.+|.+.|+++|+++|+++      |++++||++++.+..|       +++...++|.+++++|||+++|+| |.+
T Consensus       178 ~~v~~~tG~~~~~~~i~~~~~~~------g~~~~vD~aq~~G~~~-------id~~~~gvD~~~~s~hK~l~g~pG-~~l  243 (406)
T TIGR01814       178 SGVQYYTGQLFDMAAITRAAHAK------GALVGFDLAHAVGNVP-------LDLHDWGVDFACWCTYKYLNAGPG-AGA  243 (406)
T ss_pred             eccccccceecCHHHHHHHHHHc------CCEEEEEcccccCCcc-------cccccCCCCEEEEcCccccCCCCC-eEE
Confidence            99999999999999999999999      9999999999987663       455445899999999999988888 656


Q ss_pred             EEeCCCCcccccccccCccCCCC-------------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHH
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQ-------------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSS  353 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~-------------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~  353 (369)
                      +++.+... ........|.+...             ..-...||.+....+++..+++.+...|+.++  ++.+++++++
T Consensus       244 ~v~~~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  322 (406)
T TIGR01814       244 FVHEKHAH-TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLE  322 (406)
T ss_pred             EEehhhhh-hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            65543221 11001112211100             00001377887778888899999988888888  9999999999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|++.
T Consensus       323 ~~l~~~  328 (406)
T TIGR01814       323 ELIKAR  328 (406)
T ss_pred             HHHHhh
Confidence            999874

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.91  E-value=1.2e-22  Score=196.05  Aligned_cols=255  Identities=13%  Similarity=0.018  Sum_probs=182.4

Q ss_pred             HHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 017569           74 KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD  153 (369)
Q Consensus        74 ~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~  153 (369)
                      +.+.+++...+.++  .+...++.+++++.+++++|++++.   ...++|+|||+++..++.++..+        |    
T Consensus        16 ~~v~~~~~~~~~~~--~~~~~~~~~~~r~~la~l~~~~~~~---~~i~~t~~~t~al~~~~~~l~~~--------~----   78 (363)
T TIGR02326        16 RTVKEAMLFDWCTW--DSDYNIVVEQIRQQLLALATAEEGY---TSVLLQGSGTFAVEAVIGSAVPK--------D----   78 (363)
T ss_pred             HHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCCHHHHHHHHHhcCCC--------C----
Confidence            33444443333333  2355666778999999999997521   24789999999999888776431        1    


Q ss_pred             CCeEEecCCCcch-HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc--CcEEEEeeCCCCcccCCCHHHHHHHHHH
Q 017569          154 KPNIVTGANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN--TICVAAILGSTLTGEFEDVKLLHDLLTK  230 (369)
Q Consensus       154 ~~~Vi~s~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~~~~~~~~tG~~~~l~~I~~l~~~  230 (369)
                      +..|+++...|.. +...++..|++++.+|++++ +.+|+++++++++++  +++|.+++++|+||.+.|+++|+++|++
T Consensus        79 ~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~  157 (363)
T TIGR02326        79 GKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEV-EPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHR  157 (363)
T ss_pred             CeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHH
Confidence            2345555555555 35777889999999999864 789999999999864  4678889999999999999999999999


Q ss_pred             hhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-ccC-ccC
Q 017569          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-HIN-YLG  308 (369)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~-y~~  308 (369)
                      +      ++++++|++++.+..       ++++...++|.++.++|||+++|+|.|+++++++. +. .+.. ... +..
T Consensus       158 ~------g~~livD~~~~~g~~-------~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~-~~~~~~~~~~~~  222 (363)
T TIGR02326       158 H------GKVTIVDAMSSFGGI-------PIDIAELHIDYLISSANKCIQGVPGFGFVIARQAE-LA-ACKGNARSLSLD  222 (363)
T ss_pred             c------CCEEEEEccccccCc-------ccchhhcCccEEEecCccccccCCcceEEEECHHH-HH-HhhcCCCceeec
Confidence            9      999999998875443       23444447999999999999999999999997642 11 1110 000 000


Q ss_pred             -------CCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          309 -------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       309 -------~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                             .........+|.+....+++..+++.+..+ |++++  ++.+++.++++.|+++|+
T Consensus       223 ~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~  285 (363)
T TIGR02326       223 LYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGF  285 (363)
T ss_pred             HHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                   000000122456666778888889888666 47766  999999999999998874

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.90  E-value=4.9e-23  Score=193.03  Aligned_cols=226  Identities=13%  Similarity=-0.011  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcc
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~  176 (369)
                      .+++++.+++++|.+.      ..++++|+++++..++.++..+             +++|+++.+.|.++..++...|+
T Consensus        61 i~~~~~~~A~~~ga~~------~~~~~~Gst~a~~~~l~al~~~-------------gd~Vlv~~~~h~s~~~~~~~~g~  121 (294)
T cd00615          61 IKEAQELAARAFGAKH------TFFLVNGTSSSNKAVILAVCGP-------------GDKILIDRNCHKSVINGLVLSGA  121 (294)
T ss_pred             HHHHHHHHHHHhCCCC------EEEEcCcHHHHHHHHHHHcCCC-------------CCEEEEeCCchHHHHHHHHHCCC
Confidence            3455666999999874      2445899999998888876442             57999999999999999999999


Q ss_pred             eeEEEeccCCc-----cccCHHHHHHHHhh--cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          177 ELKEVKLEEGY-----YVMNPVKAVELVDE--NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       177 ~v~~v~~~~~~-----~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      .+++++++.+.     +.+|++++++++++  ++++|++++| |++|.+.|+++|+++|+++      +++++||+||+.
T Consensus       122 ~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~------g~~livDeA~~~  194 (294)
T cd00615         122 VPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHR------GLPVLVDEAHGA  194 (294)
T ss_pred             EEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhc------CCeEEEECcchh
Confidence            99999875422     37999999999974  5788999988 6899999999999999999      999999999986


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      ...  +.+..+......++|.++.|+||++.++.++|++.+++.......+........        .+|.+.....++-
T Consensus       195 ~~~--~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~--------ttsps~~~~asl~  264 (294)
T cd00615         195 HFR--FHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQ--------STSPSYLILASLD  264 (294)
T ss_pred             hhc--cCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHC--------CCCcHHHHHHHHH
Confidence            432  222222233344899999999999988888888887654221111111111111        1355555567777


Q ss_pred             HHHHHhcHhhHHHH-HhhHHHHHHHHHHHh
Q 017569          330 YQFIRLGFEVIPSF-CCVDHKKLSSFFVIH  358 (369)
Q Consensus       330 ~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~  358 (369)
                      .+++.+..+|.+.+ ++.+++++++++|++
T Consensus       265 ~a~~~~~~~g~~~~~~~~~~~~~~r~~l~~  294 (294)
T cd00615         265 VARAMMALEGKELVEELIELALYARQEINK  294 (294)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence            88888877787766 999999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.89  E-value=9.7e-22  Score=183.32  Aligned_cols=229  Identities=15%  Similarity=0.122  Sum_probs=177.4

Q ss_pred             HHHHHHHHhhhhcCCCCccccccccCCChH-HHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 017569           41 AAYQVINDELMLDGNPRLNLASFVTTWMEP-ECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (369)
Q Consensus        41 ~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~-~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (369)
                      .++.++..+......+.. |+.+.|+.++| .+.+++..+.... ..+|...-|..+|.+.+++.+++++|...+.  ..
T Consensus        18 ~vw~e~~~la~e~~~~~~-LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~--~~   94 (420)
T KOG0257|consen   18 YVWTEINRLAAEHKVPNP-LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDP--DD   94 (420)
T ss_pred             cHHHHHHHHHHhcCCCCc-ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCC--cc
Confidence            455555554433323321 78888887655 4788888887664 4566666789999999999999999887532  34


Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-------CCccccC
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-------EGYYVMN  191 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-------~~~~~~d  191 (369)
                      .+.+|.|+.+|+..++.++.+.             +++|++.+|.+.+|....++.|..++.|+..       .++|.+|
T Consensus        95 eVlVT~GA~~ai~~~~~~l~~~-------------GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D  161 (420)
T KOG0257|consen   95 EVLVTAGANEAISSALLGLLNP-------------GDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLD  161 (420)
T ss_pred             cEEEecCchHHHHHHHHHHcCC-------------CCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCC
Confidence            5999999999999999998874             6899999999999999999999999999987       4569999


Q ss_pred             HHHHHHHHhhcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCC
Q 017569          192 PVKAVELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPL  267 (369)
Q Consensus       192 ~~~L~~~i~~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~  267 (369)
                      .++|+.+++++|++|++++|+||||.+   ..+++|+++|+++      |+++++|++|..++..   +.....+. +++
T Consensus       162 ~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~------~~lvisDevYe~~v~d---~~~h~r~aslPg  232 (420)
T KOG0257|consen  162 PEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH------GLLVISDEVYEWLVYD---GNKHIRIASLPG  232 (420)
T ss_pred             hHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC------CEEEEEhhHhHHHhhC---CCcceeeecCCc
Confidence            999999999999999999999999998   4599999999999      9999999999987652   21011111 222


Q ss_pred             C--cEEEEc-CccC-CCCCCCeEEEEEeCCCC
Q 017569          268 V--KSINVS-GHKY-GLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       268 ~--Dsi~~~-~hK~-l~~p~g~g~l~~~~~~~  295 (369)
                      .  -.++++ ..|. ++++|..||++. ++.+
T Consensus       233 m~ertitvgS~gKtf~~TGWrlGW~ig-p~~L  263 (420)
T KOG0257|consen  233 MYERTITVGSFGKTFGVTGWRLGWAIG-PKHL  263 (420)
T ss_pred             hhheEEEeccccceeeeeeeeeeeeec-hHHh
Confidence            1  233333 5665 566899999987 4433

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=9.9e-22  Score=186.00  Aligned_cols=241  Identities=13%  Similarity=0.031  Sum_probs=192.8

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--
Q 017569           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--  166 (369)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--  166 (369)
                      .++....+.+++++.+..+++.+..    ....++.+||.++-.++..+..+             +++|++.....+.  
T Consensus        32 ~s~~F~~~~~~~~~~L~~v~~t~~~----~~~ll~gsGt~amEAav~sl~~p-------------gdkVLv~~nG~FG~R   94 (383)
T COG0075          32 RSPDFVGIMKEVLEKLRKVFGTENG----DVVLLSGSGTLAMEAAVASLVEP-------------GDKVLVVVNGKFGER   94 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCC----cEEEEcCCcHHHHHHHHHhccCC-------------CCeEEEEeCChHHHH
Confidence            4677888899999999999999831    34677788899998888877653             4677777666554  


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc--CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN--TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      +...++.+|++++.+.++.. -.+|+++++++++++  .+.|.+++..|+||...|+++|+++|+++      +..++||
T Consensus        95 ~~~ia~~~g~~v~~~~~~wg-~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~------g~l~iVD  167 (383)
T COG0075          95 FAEIAERYGAEVVVLEVEWG-EAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH------GALLIVD  167 (383)
T ss_pred             HHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHc------CCEEEEE
Confidence            78899999999999998864 689999999999954  57899999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc-cC-cc------CCCCCCccc
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH-IN-YL------GSDQPTFTL  316 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~-y~------~~~~~~~~l  316 (369)
                      ++.+.+..       +++++..++|.+..++||++++|+|.|++.++++.+-. ..... +. |+      ..-......
T Consensus       168 aVsS~Gg~-------~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~-~~~~~~~~~ylDL~~~~~~~~~~~~~  239 (383)
T COG0075         168 AVSSLGGE-------PLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEA-IEERKHPSFYLDLKKWLKYMEKKGST  239 (383)
T ss_pred             ecccCCCc-------ccchhhcCccEEEecCchhccCCCccceeEECHHHHHH-HhcCCCCceeecHHHHHHHHhhcCCC
Confidence            98775544       24445558999999999999999999999998753321 10011 11 11      110111234


Q ss_pred             cCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          317 NFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       317 ~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..|.+....+++..+|+.+-.||++.+  |+..+++++++.++++|+
T Consensus       240 p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl  286 (383)
T COG0075         240 PYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGL  286 (383)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            578888889999999999999999999  999999999999999986

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.88  E-value=1.8e-21  Score=188.06  Aligned_cols=238  Identities=13%  Similarity=0.045  Sum_probs=175.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--HH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--EK  169 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~--~~  169 (369)
                      ...+..+++++.+++++|.+++.   ....++.+|++++..++.++..+             ++.|+++.+.++..  ..
T Consensus        34 ~~~~~~~~~~~~l~~l~~~~~~~---~~i~~~~~gt~~l~~~~~~l~~~-------------~~~vlv~~~~~~~~~~~~   97 (368)
T PRK13479         34 DFNALTASVRAKLVAIATGEEGY---TCVPLQGSGTFSVEAAIGSLVPR-------------DGKVLVPDNGAYGARIAQ   97 (368)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCcHHHHHHHHHhccCC-------------CCeEEEEeCCchHHHHHH
Confidence            34456778999999999986421   23678899999999988887432             35677766666554  47


Q ss_pred             HHhhhcceeEEEeccCCccccCHHHHHHHHhhc--CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccc
Q 017569          170 FARYFEVELKEVKLEEGYYVMNPVKAVELVDEN--TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (369)
Q Consensus       170 ~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~  247 (369)
                      .++..|++++.||++.+ +.+|+++++++++++  ++.|.+++++|+||.+.|+++|.++|+++      ++++++|+++
T Consensus        98 ~~~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~------~~~livDa~~  170 (368)
T PRK13479         98 IAEYLGIAHVVLDTGED-EPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRH------GKRLIVDAMS  170 (368)
T ss_pred             HHHHcCCcEEEEECCCC-CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHc------CCEEEEEccc
Confidence            77889999999999764 789999999999754  56788999999999999999999999999      9999999877


Q ss_pred             ccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-ccCccCC-------CCCCccccCC
Q 017569          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-HINYLGS-------DQPTFTLNFS  319 (369)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~y~~~-------~~~~~~l~~t  319 (369)
                      +.+..       +.++...++|.++.++|||+++|+|.|+++++++ .+ +.+.. ...|...       ........+|
T Consensus       171 ~~g~~-------~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  241 (368)
T PRK13479        171 SFGAI-------PIDIAELGIDALISSANKCIEGVPGFGFVIARRS-EL-EACKGNSRSLSLDLYDQWAYMEKTGQWRFT  241 (368)
T ss_pred             ccCCc-------cccccccCceEEEecCccccccCCCceEEEECHH-HH-HHhhcCCCCeeecHHHHHhhhcccCCCCCC
Confidence            54332       2344444789999999999999999999998753 21 11111 1111000       0000111135


Q ss_pred             cchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          320 KGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       320 r~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+....+++..++..+..+| +.++  ++.++++++++.|+++|+
T Consensus       242 ~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  286 (368)
T PRK13479        242 PPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGF  286 (368)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56666778888998886654 6666  899999999999999875

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.88  E-value=4e-21  Score=184.28  Aligned_cols=256  Identities=12%  Similarity=0.037  Sum_probs=182.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++...++    .+  .+...++.+++++.+++++|++++   .....++.||++++..++.++..+       
T Consensus        10 ~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~la~~~~~~~~---~~~i~~~~~gt~~l~~~~~~~~~~-------   73 (355)
T TIGR03301        10 TSATVRDAMLVDWC----HW--DSEFNDVTDQVRDRLLALAGGDDN---HTCVLLQGSGTFAVEATIGSLVPR-------   73 (355)
T ss_pred             CCHHHHHHhhhhcc----CC--CHHHHHHHHHHHHHHHHHhcCCCC---CcEEEEeCCcHHHHHHHHHhccCC-------
Confidence            34667777665321    22  123446777899999999999862   124678999999999988876432       


Q ss_pred             cCCCCCCCeEE-ecCCCcch-HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc--CcEEEEeeCCCCcccCCCHHH
Q 017569          148 QGKPYDKPNIV-TGANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN--TICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       148 ~g~~~~~~~Vi-~s~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~--~~~v~~~~~~~~tG~~~~l~~  223 (369)
                            +++++ +....|.. +..+++..|++++.++.+.+ +.+|+++++++++++  +++|++++++|++|.+.|+++
T Consensus        74 ------~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~  146 (355)
T TIGR03301        74 ------DGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEY-EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEA  146 (355)
T ss_pred             ------CCeEEEECCCchhhHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHH
Confidence                  34544 45555544 56778889999999998754 789999999999754  467778889999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-c
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-F  302 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~  302 (369)
                      |+++|+++      ++++++|++++.+..       ++++...++|.++.++|||+++|.|+|+++++++ .+ +.+. .
T Consensus       147 i~~l~~~~------~~~livD~~~s~g~~-------~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~~  211 (355)
T TIGR03301       147 IAKVARSH------GAVLIVDAMSSFGAI-------PIDIEELDVDALIASANKCLEGVPGFGFVIARRD-LL-EASAGN  211 (355)
T ss_pred             HHHHHHHc------CCEEEEEeccccCCc-------ccchhhcCccEEEecCCcccccCCceeEEEECHH-HH-HHhhCC
Confidence            99999999      999999998765433       2334434789999999999999999999998753 22 1111 0


Q ss_pred             ccCccCCC-------CCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 HINYLGSD-------QPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 ~~~y~~~~-------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ...+....       .......++.+.....++..+++.+..+| +.+.  +..++++++++.|+++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~  280 (355)
T TIGR03301       212 ARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGF  280 (355)
T ss_pred             CCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            01110000       00011224555555677788888887776 7766  889999999999998874

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.88  E-value=1.6e-20  Score=193.91  Aligned_cols=297  Identities=9%  Similarity=-0.011  Sum_probs=207.0

Q ss_pred             CCCHHHHHHHHHHhhhhcCC---CCccccccccC--CChHH-HHHHHHHHhccCCCCC-CCCcchHHHHHHHHHHHHHHh
Q 017569           36 SMPKEAAYQVINDELMLDGN---PRLNLASFVTT--WMEPE-CDKLVMASINKNYVDM-DEYPVTTELQNRCVNMIAHLF  108 (369)
Q Consensus        36 ~~~~~~i~~~l~~~~~~~~~---p~~~l~~~~~~--~~~~~-v~~~~~~~~~~n~~~~-~~~~~~~~le~~~~~~la~l~  108 (369)
                      ..|+.++++.++.+-..+..   ..+.|++ |+.  ....+ +-....++++..++++ +.+++..++-.++.+|+++++
T Consensus       478 ~~SE~el~r~~~~La~kn~~~~~~~~~LGs-CTmK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLt  556 (954)
T PRK12566        478 HHSETEMLRYLKQLENKDLALNQSMIPLGS-CTMKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAIT  556 (954)
T ss_pred             CCCHHHHHHHHHHHHhcCcCcccCcccCcc-cccCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHH
Confidence            47899999999988765432   2233333 221  11111 1112234555566776 567888888899999999999


Q ss_pred             CCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCcc
Q 017569          109 NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYY  188 (369)
Q Consensus       109 g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~  188 (369)
                      |++.      ...--.+|+.+.+.++++++..+..    .|.. .+.+|++|...|.+....+...|++++.||++++ +
T Consensus       557 Gmd~------~Sl~p~sGA~gE~A~Lmair~yh~~----~Ge~-~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~-G  624 (954)
T PRK12566        557 GFDA------ICMQPNSGAQGEYAGLLAIRRYHRS----RGQS-QRDICLIPSSAHGTNPASAQMAGMRVVIVECDPD-G  624 (954)
T ss_pred             CCCe------EeecCCchHHHHHHHHHHHHHHHHh----cCCC-CCCEEEecccccccCHHHHHHCCCEEEEeccCCC-C
Confidence            9995      1233347788888888887754321    2322 2568999999997766668888999999999864 8


Q ss_pred             ccCHHHHHHHHh---hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC
Q 017569          189 VMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL  265 (369)
Q Consensus       189 ~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  265 (369)
                      .+|+++|+++++   +++.+|++++|++..+..+|+++|+++|+++      |+++++|+|+.....++..|      ..
T Consensus       625 ~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~------Galv~vDgA~~~a~~~l~~P------g~  692 (954)
T PRK12566        625 NVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQH------GGQVYMDGANLNAQVGLARP------AD  692 (954)
T ss_pred             CcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHc------CCEEEEEeeChhhccCCCCh------hh
Confidence            999999999998   5788899999999876768899999999999      99999999986433321111      24


Q ss_pred             CCCcEEEEcCccCCCCCCCeEEEEEeC---CCCccccccccc--CccCCCCCCc--cccCCcchhHHHHHHHHHHHhcHh
Q 017569          266 PLVKSINVSGHKYGLVYAGVGWVVWRT---KDDLPDELVFHI--NYLGSDQPTF--TLNFSKGSSQIIAQYYQFIRLGFE  338 (369)
Q Consensus       266 ~~~Dsi~~~~hK~l~~p~g~g~l~~~~---~~~~~~~~~~~~--~y~~~~~~~~--~l~~tr~~~~~l~~~~~l~~lg~~  338 (369)
                      .++|.++.++|||+++|.|.|..+++.   ++.+...+...+  +..+......  ...++-++..++..|..++.+|.+
T Consensus       693 ~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e  772 (954)
T PRK12566        693 IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ  772 (954)
T ss_pred             cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH
Confidence            589999999999999998888877654   221111111111  0101000011  112444555688999999999999


Q ss_pred             hHHHH--HhhHHHHHHHHHHHh
Q 017569          339 VIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       339 G~~~~--~~~~~a~~l~~~L~~  358 (369)
                       +.+.  .++.+|+|++++|.+
T Consensus       773 -Lk~aa~~ailnAnYla~rL~~  793 (954)
T PRK12566        773 -LADASEVAILSANYLANQLGG  793 (954)
T ss_pred             -HHHHHHHHHHHHHHHHHHhHh
Confidence             7776  689999999999976

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.88  E-value=2.3e-20  Score=180.50  Aligned_cols=227  Identities=15%  Similarity=0.076  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      .+.++.+++++|.+.       ..+++||++++..++.++..+             ++.|+++.+.|++...+++..|++
T Consensus        54 ~~~~e~lA~~~g~~~-------~~i~~g~~~a~~~~~~~l~~~-------------gd~Vl~~~~~h~s~~~~~~~~g~~  113 (370)
T TIGR02539        54 HDFLEDLAEFLGMDE-------ARVTHGAREGKFAVMHALCKE-------------GDWVVLDGLAHYTSYVAAERAGLN  113 (370)
T ss_pred             HHHHHHHHHHhCCCc-------eEEECChHHHHHHHHHHhhCC-------------CCEEEECCcccHHHHHHHHHcCCE
Confidence            355666999999985       677899999998888877532             468999999999888888999999


Q ss_pred             eEEEeccC-CccccCHHHHHHHHhh-------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          178 LKEVKLEE-GYYVMNPVKAVELVDE-------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       178 v~~v~~~~-~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      ++.+|.++ +++.+|+++|++++++       ++++|++++++|++|.+.|+++|+++|+++      ++++++|+||+.
T Consensus       114 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~------~~~livDea~~~  187 (370)
T TIGR02539       114 VKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREK------GVPLLLNCAYTV  187 (370)
T ss_pred             EEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHc------CCeEEEECcccc
Confidence            99999864 3589999999999964       578999999999999999999999999999      999999999987


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      +..+       .+....++|.++.++|||++++.++|+++.+++ .. +.+.....+..-.... .+.++.....+..++
T Consensus       188 g~~~-------~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~-~i-~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  257 (370)
T TIGR02539       188 GRMP-------VSAKEIGADFIVGSGHKSMAASGPCGVLGMSEE-WE-DIVLRKSRYSPVKEVE-LLGCTSRGAPIVTMM  257 (370)
T ss_pred             CCcC-------CCHHHcCCCEEEeeCcccccCCCCEEEEEECHH-HH-hhhcccccCCccceee-eecccccccHHHHHH
Confidence            5431       111123589999999999987777898887543 32 2222211111110000 111233333455555


Q ss_pred             HHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          330 YQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       330 ~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      +++... .+-+..+ +..+++++|++.|+++|+
T Consensus       258 ~al~~~-~~~l~~~~~~~~~~~~l~~~L~~~g~  289 (370)
T TIGR02539       258 ASFPHV-VERVKRWDEEVKKTRWFVAELEDIGF  289 (370)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            555433 2334444 677778999999999985

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.87  E-value=1e-20  Score=187.51  Aligned_cols=257  Identities=13%  Similarity=0.036  Sum_probs=179.2

Q ss_pred             CChHHHHHHHHHHhccCC--CCCCC-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe---CCchHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY--VDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT---VGSSEAIMLAGLA  136 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~--~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t---~Ggt~a~~~al~~  136 (369)
                      ..+|.+.+++...+.+..  +++..     .....++|+.+++.++++||+++++     ..++   +||++||..++.+
T Consensus        45 ~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~-----~~~~~~~~sgt~an~~v~~a  119 (452)
T PTZ00094         45 FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEE-----WGVNVQPYSGSPANFAVYTA  119 (452)
T ss_pred             cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCccc-----ceeecCCCchHHHHHHHHHH
Confidence            456788888888775443  23211     1235677777889999999997631     3344   7899999998888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh----------hcceeEEEeccCCccccCHHHHHHHHhh-cCcE
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY----------FEVELKEVKLEEGYYVMNPVKAVELVDE-NTIC  205 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~----------~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~  205 (369)
                      +..+             ++.|+++...|.+....+..          .++++..++++.+ +.+|+++|++++++ ++++
T Consensus       120 l~~~-------------gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~id~~~L~~~l~~~~~~l  185 (452)
T PTZ00094        120 LLQP-------------HDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK-GLIDYDKLEELAKAFRPKL  185 (452)
T ss_pred             hcCC-------------CCEEEecccccCCcccccccccccccccceeeeeeeecccCCC-CCcCHHHHHHHHHHhCCCE
Confidence            7432             46899988888775443321          1233445556654 89999999999965 6776


Q ss_pred             EEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe
Q 017569          206 VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (369)
Q Consensus       206 v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~  285 (369)
                      |++.  .+.+|.+.|+++|+++|+++      |+++|||++++.+..+.  +..+..  ..++|.+++++|||+++|.| 
T Consensus       186 vi~~--~s~~g~~~di~~I~~i~~~~------ga~l~vDaaq~~G~i~~--~~~~~~--~~~~D~l~~S~hK~l~GP~G-  252 (452)
T PTZ00094        186 IIAG--ASAYPRDIDYKRFREICDSV------GAYLMADIAHTSGLVAA--GVLPSP--FPYADVVTTTTHKSLRGPRS-  252 (452)
T ss_pred             EEEe--CCCCCCccCHHHHHHHHHHc------CCEEEEeccchhccccC--CCCCCC--CCCCcEEEcCCccCCCCCCc-
Confidence            6643  45689999999999999999      99999999999877631  110111  33799999999999999998 


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      |+++++++ .. ..+..   ..... ..+.+.|+.+...++++..+++.+...+++++  +..+++++|++.|.+.|+
T Consensus       253 g~l~~~~~-~~-~~l~~---~~~~~-~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~  324 (452)
T PTZ00094        253 GLIFYRKK-VK-PDIEN---KINEA-VFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGY  324 (452)
T ss_pred             eEEEEecc-cc-hHHHH---hhccc-cCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            77777653 21 11100   00000 00112356666678888899999977777666  899999999999988764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.87  E-value=7.2e-21  Score=188.05  Aligned_cols=271  Identities=14%  Similarity=0.104  Sum_probs=179.0

Q ss_pred             cCCCCcccccccc--CCCh----HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           53 DGNPRLNLASFVT--TWME----PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        53 ~~~p~~~l~~~~~--~~~~----~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      .+.+.++|..+.+  ...+    ..+.+.+.+++..+...|..+++..+|+++    +++++|.+.       +++|+||
T Consensus        34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lrea----ia~~~~~~~-------vv~t~gg  102 (460)
T PRK13238         34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDA----VKDIFGYPY-------TIPTHQG  102 (460)
T ss_pred             cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHH----HHHHhCCCc-------EEECCCH
Confidence            3445566666555  2222    246777777776555667778899999887    666777764       8999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-------Ccc--ccCHHHHHH
Q 017569          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-------GYY--VMNPVKAVE  197 (369)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-------~~~--~~d~~~L~~  197 (369)
                      ++|+.+++.++.++             ++ |+++++.+.++...+.+.|+.++.+|+++       +.+  .+|+++|++
T Consensus       103 t~A~~~~~~all~p-------------GD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~  168 (460)
T PRK13238        103 RAAEQILFPVLIKK-------------GD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEA  168 (460)
T ss_pred             HHHHHHHHHHhCCC-------------CC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHH
Confidence            99999998877542             35 88899888888888889999999999863       234  499999999


Q ss_pred             HHhh----cCcEEEEeeCCCCcc-cC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC---C-cccccc-
Q 017569          198 LVDE----NTICVAAILGSTLTG-EF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---D-LEWDFR-  264 (369)
Q Consensus       198 ~i~~----~~~~v~~~~~~~~tG-~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~-~~~~~~-  264 (369)
                      +|++    ++++|++++|+||+| .+   +++++|+++|+++      |+++++|+|+....+-|...   . ....+. 
T Consensus       169 ~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~------gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~  242 (460)
T PRK13238        169 LIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY------GIPVVIDAARFAENAYFIKQREPGYKDKSIKE  242 (460)
T ss_pred             HHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECcchhhhhhhhhhccccccCCCHHH
Confidence            9984    689999999999998 44   4578999999999      99999999763211101110   0 001110 


Q ss_pred             -----CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh
Q 017569          265 -----LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV  339 (369)
Q Consensus       265 -----~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G  339 (369)
                           ....|++++++||.+++|.| |+++.++.+... .+.. .........++   |..+.....++..+|+..-.+.
T Consensus       243 i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~-~~~~-~~~~~~g~~t~---~g~~~~~~~Ala~~l~e~~~~~  316 (460)
T PRK13238        243 IAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFT-ECRT-LCILYEGFPTY---GGLAGRDMEALAVGLYEGMDED  316 (460)
T ss_pred             HhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHH-Hhhh-cccccCCcccc---cCcHHHHHHHHHhhHHHhhChH
Confidence                 23689999999999999986 888887643332 1111 10011111111   2222322333434444322222


Q ss_pred             HHHHHhhHHHHHHHHHHHhcCC
Q 017569          340 IPSFCCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       340 ~~~~~~~~~a~~l~~~L~~~g~  361 (369)
                      +.. ...+..++|.+.|++.|+
T Consensus       317 ~~~-~~~~~~~~l~~~L~~~G~  337 (460)
T PRK13238        317 YLA-YRIGQVEYLGEGLEEAGV  337 (460)
T ss_pred             HHH-HHHHHHHHHHHHHHHCCC
Confidence            222 344467999999998775

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.86  E-value=2.8e-20  Score=179.27  Aligned_cols=246  Identities=14%  Similarity=0.017  Sum_probs=174.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .+++++.+++.++++. .      -...++.+++++++++++|.+.       .++|+|+|+|+.+++.++..+      
T Consensus        24 ~~~~~v~~a~~~~~~~-~------~~~~~~~~~~~~~~a~~~g~~~-------~~~~~g~t~al~~al~al~~~------   83 (363)
T TIGR01437        24 TVSDEVADAQKRGAQN-Y------FEIKELVNKTGEYIANLLGVED-------AVIVSSASAGIAQSVAAVITR------   83 (363)
T ss_pred             CCCHHHHHHHHHHHhc-C------CCHHHHHHHHHHHHHHhhCCCe-------EEEEcCHHHHHHHHHHHHhcC------
Confidence            4568899998888642 1      2356778889999999999874       799999999999999987542      


Q ss_pred             hcCC----------CCCCCeEEecCCCcchH----HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEE-EeeC
Q 017569          147 EQGK----------PYDKPNIVTGANVQVCW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA-AILG  211 (369)
Q Consensus       147 ~~g~----------~~~~~~Vi~s~~~h~s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~-~~~~  211 (369)
                        |+          ...+++|+++.+.++.+    ..++.+.|+.+++++++   +.+|+++++++|+++|++++ ++++
T Consensus        84 --Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~~le~ai~~~t~ai~~v~~~  158 (363)
T TIGR01437        84 --GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAEQLEAAITEKTAAILYIKSH  158 (363)
T ss_pred             --CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHHHHHHhcChhceEEEEEecC
Confidence              21          11234888888544433    56778889999888863   57999999999999998766 5778


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      ++++|.+.|+++|+++|+++      |+++|+|+||+...        . .....++|.+++|+||++.+|. .|+++.+
T Consensus       159 ~~~~g~~~~~~~i~~~a~~~------gi~vivD~a~~~~~--------~-~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~  222 (363)
T TIGR01437       159 HCVQKSMLSVEDAAQVAQEH------NLPLIVDAAAEEDL--------Q-KYYRLGADLVIYSGAKAIEGPT-SGLVLGK  222 (363)
T ss_pred             CCCcCCcCCHHHHHHHHHHc------CCeEEEECCCCCch--------H-HHHHcCCCEEEEeCCcccCCCc-eEEEEEc
Confidence            89999999999999999999      99999999997211        0 1111268999999999998887 6887754


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                       ++.+. ...  . +..+....+. .++   ...+++.+++..+-..|.+.+ +..+.+.+++++|.+.+.+
T Consensus       223 -~~~i~-~~~--~-~~~~~~~~~~-~~~---~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~  285 (363)
T TIGR01437       223 -KKYIE-WVK--L-QSKGIGRAMK-VGK---ENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGV  285 (363)
T ss_pred             -HHHHH-HHH--h-ccCCCcceec-cCH---HHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCe
Confidence             32321 111  1 0011000000 011   235777778887755565555 5556777899999987543

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.86  E-value=6.1e-20  Score=180.05  Aligned_cols=269  Identities=13%  Similarity=0.023  Sum_probs=190.0

Q ss_pred             CCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           55 NPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        55 ~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ++.++|+.+.|..+ ++.+.+.+.++++.+...|....+..+|++++.+++.+.+|.+.+.  ...+++|+|+++|+.++
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~--~~~I~vt~G~~~al~~~  131 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP--EKEVTVTSGCTEAIAAT  131 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCHHHHHHHH
Confidence            45567777777654 5678888888876654556666789999999999999988876422  12488999999999888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +.++.++             +++|++++++|..+...++..|++++.++++++++.+|+++|++++.+++++|++++|+|
T Consensus       132 ~~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~N  198 (413)
T PLN00175        132 ILGLINP-------------GDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHN  198 (413)
T ss_pred             HHHhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCC
Confidence            8876542             478999999999999999999999999999764589999999999998999999999999


Q ss_pred             CcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCCC-CCCCeEE
Q 017569          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       214 ~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      |||.+.   ++++|+++|+++      ++|+++|++|..+...  .+... ..+. ...-..+..+..|.++ .++.+|+
T Consensus       199 PtG~~~s~~~l~~l~~~a~~~------~~~ii~De~Y~~l~~~--~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~  270 (413)
T PLN00175        199 PTGKMFTREELELIASLCKEN------DVLAFTDEVYDKLAFE--GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGW  270 (413)
T ss_pred             CCCcCCCHHHHHHHHHHHHHc------CcEEEEecccCccccC--CcccChhhCCCCcCcEEEEecchhhccCcchheee
Confidence            999985   588899999999      9999999999875431  11000 1111 1112234456788876 6688999


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++..+ +.. ..+.....+.     .    .   +...+.++++...+  +..-+++.  +..+..+++.+.|++.|
T Consensus       271 ~v~~~-~l~-~~l~~~~~~~-----~----~---~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  333 (413)
T PLN00175        271 AIAPP-HLT-WGVRQAHSFL-----T----F---ATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVG  333 (413)
T ss_pred             eEeCH-HHH-HHHHHHHhhc-----c----C---CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            98743 222 2221111111     0    0   11233445555555  22224444  67778888999998876

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.86  E-value=1e-20  Score=180.44  Aligned_cols=252  Identities=15%  Similarity=0.006  Sum_probs=167.1

Q ss_pred             ccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           62 SFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      +..+..+++.+.+++.++..... .+...+    ..+++++++++++| +.      ..++++||++++..++.++..+ 
T Consensus         4 ~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~----~~~~l~~~~a~~~g-~~------~~~~~~~gt~a~~~~~~~l~~~-   70 (338)
T cd06502           4 SDTVTGPTPEMLEAMAAANVGDD-VYGEDP----TTAKLEARAAELFG-KE------AALFVPSGTAANQLALAAHTQP-   70 (338)
T ss_pred             cccCCCCCHHHHHHHHhcccCCc-ccCCCH----HHHHHHHHHHHHhC-CC------eEEEecCchHHHHHHHHHhcCC-
Confidence            34455567888888877653221 222223    34456667999999 32      3889999999998888876432 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHH---HHhhhcceeEEEeccCCccccCHHHHHHHHhh-------cCcEEEEeeC
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDE-------NTICVAAILG  211 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-------~~~~v~~~~~  211 (369)
                                  +++|+++.++|.++..   .++..|++++.+|.+.  +.+|+++|++++++       ++++|++++|
T Consensus        71 ------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p  136 (338)
T cd06502          71 ------------GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN--GKLTPEDLEAAIRPRDDIHFPPPSLVSLENT  136 (338)
T ss_pred             ------------CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC--CcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence                        4689999999987554   3456799999998753  68999999999975       6889999999


Q ss_pred             CCCccc--CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          212 STLTGE--FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       212 ~~~tG~--~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      +|+.|.  .+++++|+++|+++      ++++|+|+||..+...  ...........++|+++.++|||++.|.|  .++
T Consensus       137 ~n~g~~~~~~~l~~i~~~~~~~------~~~livDea~~~~~~~--~~~~~~~~~~~~~d~~~~s~sK~~~~~~g--~~~  206 (338)
T cd06502         137 TEGGTVYPLDELKAISALAKEN------GLPLHLDGARLANAAA--ALGVALKTYKSGVDSVSFCLSKGGGAPVG--AVV  206 (338)
T ss_pred             cCCccccCHHHHHHHHHHHHHc------CCeEeechHHHHHHHH--hcCCCHHHHHhcCCEEEEeccccCCCccc--eEE
Confidence            997443  36788999999999      9999999998543220  01001111124789999999999987753  344


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.+++.. ..+.......+         ++.+ ...+.+++++..+...++.+.  +..++++++++.|+++|+
T Consensus       207 ~~~~~~~-~~~~~~~~~~~---------~~~~-~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~  269 (338)
T cd06502         207 VGNRDFI-ARARRRRKQAG---------GGMR-QSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG  269 (338)
T ss_pred             ECCHHHH-HHHHHHHHHhC---------CChh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4443332 22211000000         1111 123444556666655556555  888999999999999876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.86  E-value=7.5e-20  Score=192.50  Aligned_cols=272  Identities=15%  Similarity=0.034  Sum_probs=187.7

Q ss_pred             ccccCCCh-HHHHHHHHHHhcc---CCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           62 SFVTTWME-PECDKLVMASINK---NYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        62 ~~~~~~~~-~~v~~~~~~~~~~---n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      +..+++++ ..+.+++..++..   |++. +..+....++.+++++.+++++|++++   ...+++|+|+|+|+.++...
T Consensus        40 ~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~---~~~VvFtsnaT~alnlva~~  116 (805)
T PLN02724         40 HAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPS---DYACVFTSGATAALKLVGET  116 (805)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCcc---ceEEEEeCChHHHHHHHHHH
Confidence            33334433 4566666555432   3332 112334566777899999999999752   13479999999999887665


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH---HhhhcceeEEEeccC-------CccccCH--HHHHHHHh----
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEE-------GYYVMNP--VKAVELVD----  200 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~-------~~~~~d~--~~L~~~i~----  200 (369)
                      +.  +.          .+++|+++...|.++...   ++..|+.++.++++.       ..+.+++  ++|++.++    
T Consensus       117 l~--~~----------~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~  184 (805)
T PLN02724        117 FP--WS----------SESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQ  184 (805)
T ss_pred             CC--CC----------CCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhc
Confidence            42  10          146899998899875543   344599999998862       1244544  66776642    


Q ss_pred             ------hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhcc---CCCceEEeecccccccccccCCCccccccCCCCcEE
Q 017569          201 ------ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEET---GWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       201 ------~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~---~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi  271 (369)
                            +++++|++++.+|.+|.+.|++.|..+++.. .++   ..++++++|||++.+..       ++++...++|++
T Consensus       185 ~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~-~~~~~~~g~~~v~vDaaQ~~g~~-------piDv~~~~~Dfl  256 (805)
T PLN02724        185 KREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQ-HSNFSKSGRWMVLLDAAKGCGTS-------PPDLSRYPADFV  256 (805)
T ss_pred             cccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhc-ccccccCcceEEEeehhhhcCCC-------CCChhhcCCCEE
Confidence                  4568999999999999999999876555532 000   00357999999987665       356665689999


Q ss_pred             EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-----------------CCccccCCcchhHHHHHHHHHHH
Q 017569          272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-----------------PTFTLNFSKGSSQIIAQYYQFIR  334 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-----------------~~~~l~~tr~~~~~l~~~~~l~~  334 (369)
                      ++|+|||+++|.|+|+|++|++ .+. .+  .+.+.++..                 ..---.||.+...++++.++++.
T Consensus       257 ~~S~HK~~GgP~G~G~L~vr~~-~~~-~l--~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~  332 (805)
T PLN02724        257 VVSFYKIFGYPTGLGALLVRRD-AAK-LL--KKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL  332 (805)
T ss_pred             EEecceeccCCCCceEEEEehh-hhh-hh--cCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH
Confidence            9999999988999999999864 211 11  122222210                 00012489999889999999999


Q ss_pred             hcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          335 LGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       335 lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +...|+..+  +..++++||.+.|.++.
T Consensus       333 l~~ig~~~I~~~~~~L~~~l~~~L~~l~  360 (805)
T PLN02724        333 LNRLTISAIAMHTWALTHYVANSLRNLK  360 (805)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHhcc
Confidence            987788888  89999999999999875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.85  E-value=1.7e-19  Score=171.99  Aligned_cols=260  Identities=15%  Similarity=-0.007  Sum_probs=183.1

Q ss_pred             HHHHHHHH-HHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           70 PECDKLVM-ASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~-~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +.+.+.+. ...+.+...+...++..++++.+.+++...+|.+..   ....++++|+++++..++.++..+        
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~~~~~~t~a~~~~~~~~~~~--------   82 (350)
T cd00609          14 PEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP---PEEIVVTNGAQEALSLLLRALLNP--------   82 (350)
T ss_pred             HHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC---cceEEEecCcHHHHHHHHHHhCCC--------
Confidence            44444433 334444455566678899999999999988775321   235889999999998888876431        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCH--HHHHHHHhhcCcEEEEeeCCCCcccCCCHHHH--
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP--VKAVELVDENTICVAAILGSTLTGEFEDVKLL--  224 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~--~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I--  224 (369)
                           +++|+++.+.|.++..+++..|+.++.++.+++ +..+.  +.++..+++++++|+++.++|++|.+.|++++  
T Consensus        83 -----g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~  156 (350)
T cd00609          83 -----GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEE-GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE  156 (350)
T ss_pred             -----CCEEEEcCCCchhHHHHHHHCCCEEEEEecccc-cCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence                 478999999999999999999999999999764 45554  67777777889999999999999999876655  


Q ss_pred             -HHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCccccccc
Q 017569          225 -HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       225 -~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                       .++|+++      ++++|+|+||+++......+.........+.|.+..+.||+++ ++.+.|++++++++.. ..+..
T Consensus       157 l~~~~~~~------~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~-~~~~~  229 (350)
T cd00609         157 LAELAKKH------GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL-ERLKK  229 (350)
T ss_pred             HHHHHHhC------CeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHH-HHHHH
Confidence             4899999      9999999999876542111100012224467888899999987 5667899987653332 22211


Q ss_pred             ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       303 ~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ...+.         .++.+.....+++..++... ++++++  +..++++++.+.|++.+...
T Consensus       230 ~~~~~---------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~  282 (350)
T cd00609         230 LLPYT---------TSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV  282 (350)
T ss_pred             HHHhc---------ccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            11111         12333334455555555443 566666  88999999999999987754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.85  E-value=1.2e-19  Score=176.03  Aligned_cols=265  Identities=13%  Similarity=-0.014  Sum_probs=184.0

Q ss_pred             ccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.+..+ ++.+.+++.+++.+....|....+..++++++.+++++.+|...+.   ...++|+|+++++..++.+
T Consensus        27 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~  103 (382)
T PRK06108         27 LPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPP---ERIAVTSSGVQALMLAAQA  103 (382)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCc---ceEEEeCChHHHHHHHHHH
Confidence            55666555543 5778888888776654456666789999999999999998944321   3488999999999888887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC--CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      +.++             ++.|+++.++|..+...++..|++++.+|++.  +++.+|+++|++.+++++++|+++.|+||
T Consensus       104 l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NP  170 (382)
T PRK06108        104 LVGP-------------GDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNP  170 (382)
T ss_pred             hcCC-------------CCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCC
Confidence            6442             46899999999999999999999999999963  34789999999999888999999999999


Q ss_pred             cccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--cccc-CCCCcEEEEcCccCCC-CCCCeEE
Q 017569          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR-LPLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       215 tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      ||.+.   ++++|.++|+++      ++|+++|++|+.+.... .....  .++. ...-..+..+.+|.++ .+.++|+
T Consensus       171 tG~~~~~~~~~~l~~~~~~~------~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~  243 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRH------GLWIVADEVYERLYYAP-GGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGW  243 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHC------CcEEEEehhhhhhccCC-CCCCCCHhhcCCCcCCEEEEeechhhccCcccceee
Confidence            99874   578899999999      99999999999765420 00101  1111 1122355667999763 5678899


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++..+ +.. ..+.....+...        +    ...+.+.++...+  +.+-++++  +..++.+++.+.|++.
T Consensus       244 ~~~~~-~~~-~~~~~~~~~~~~--------~----~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (382)
T PRK06108        244 LVAPP-ALG-QVLEKLIEYNTS--------C----VAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL  305 (382)
T ss_pred             eeCCH-HHH-HHHHHHHHhccc--------C----CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            98743 222 222111111100        1    1122333333333  33334444  7778888899999876

>PRK12414 putative aminotransferase; Provisional

Probab=99.85  E-value=3.2e-19  Score=173.41  Aligned_cols=268  Identities=13%  Similarity=0.034  Sum_probs=183.2

Q ss_pred             CccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+.+.+.. +++.+.+++.+++......|....+..++++++++++++++|.+.+.  ....++|+|+++++..++.
T Consensus        31 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~~i~it~g~~~al~~~~~  108 (384)
T PRK12414         31 ALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDP--ASEVTVIASASEGLYAAIS  108 (384)
T ss_pred             eEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEECChHHHHHHHHH
Confidence            35565555543 35667788777665444455556788999999999999999986321  1248999999999988888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++.++             +++|++++++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++|+|||
T Consensus       109 ~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPT  175 (384)
T PRK12414        109 ALVHP-------------GDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPS  175 (384)
T ss_pred             HhcCC-------------CCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCC
Confidence            76542             47899999999999999999999999999976558999999999998889999999999999


Q ss_pred             ccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-ccc-CCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          216 GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       216 G~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |.+   +++++|+++|+++      ++++++|++|..+...- .+.... .+. ...--.+..+..|.++ .+.++|+++
T Consensus       176 G~~~s~~~~~~i~~~a~~~------~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v  248 (384)
T PRK12414        176 ATVFSAADLARLAQLTRNT------DIVILSDEVYEHVVFDG-ARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCL  248 (384)
T ss_pred             CcCCCHHHHHHHHHHHHHC------CeEEEEhhhhhhccCCC-CCccCcccCcCccCcEEEEecccccccCccceEEEEe
Confidence            997   5688999999999      99999999998654310 010010 111 1111245556889774 667889998


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+ +.. ..+.....+.     .+   +.    ..+.++++...+.. ..+.+.  ...+..+++.+.|++.|
T Consensus       249 ~~~-~l~-~~l~~~~~~~-----~~---~~----s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  308 (384)
T PRK12414        249 APA-ELM-DEIRKVHQFM-----VF---SA----DTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSR  308 (384)
T ss_pred             cCH-HHH-HHHHHHHhhe-----ec---CC----CcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            743 222 2221100000     00   01    12334444444422 122233  56677788888888766

>PLN02656 tyrosine transaminase

Probab=99.85  E-value=4.9e-19  Score=173.52  Aligned_cols=275  Identities=15%  Similarity=0.072  Sum_probs=189.1

Q ss_pred             cCCCCccccccccC-----CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           53 DGNPRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        53 ~~~p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      .+...++|+.+.|.     ++++.+.+++.+++..+ ...|....+..++++++.+++.+.+|.+.+.   ..+++|+|+
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~  105 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSL---DDVFITSGC  105 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCc---ccEEEeCCh
Confidence            44555788877775     34577888888887765 3456666788999999999998887765422   358999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcE
Q 017569          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTIC  205 (369)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~  205 (369)
                      ++|+.+++.++.++             ++.|++++++|..+...++..|++++.+|+++ +++.+|+++|++++++++++
T Consensus       106 ~~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~  172 (409)
T PLN02656        106 TQAIDVALSMLARP-------------GANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA  172 (409)
T ss_pred             HHHHHHHHHHHhCC-------------CCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence            99999988887542             47899999999999888999999999999863 45789999999999888999


Q ss_pred             EEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-ccc-cccCCCCcEEE-EcCccC-
Q 017569          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEW-DFRLPLVKSIN-VSGHKY-  278 (369)
Q Consensus       206 v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~-~~~~~~~Dsi~-~~~hK~-  278 (369)
                      |++++|+||||.+   +++++|+++|+++      ++++++|++|+.+...  ... .+. .+. .....+. -+.-|. 
T Consensus       173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~-~~~~vi~~~SfSK~f  243 (409)
T PLN02656        173 LVIINPGNPCGNVYSYQHLKKIAETAEKL------KILVIADEVYGHLAFG--SNPFVPMGVFG-SIVPVLTLGSLSKRW  243 (409)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEehhhhhcccC--CCCcccHHHhc-ccCcEEEEcccchhc
Confidence            9999999999998   5789999999999      9999999999975431  111 111 111 1112333 347786 


Q ss_pred             CCCCCCeEEEEEeCCCCcc--cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--Hh-hHHHH--HhhHHHHH
Q 017569          279 GLVYAGVGWVVWRTKDDLP--DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FE-VIPSF--CCVDHKKL  351 (369)
Q Consensus       279 l~~p~g~g~l~~~~~~~~~--~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~~-G~~~~--~~~~~a~~  351 (369)
                      +..++.+|+++..+++.+.  ..+........    +. . +.   ...+.++++...+.  .+ -+++.  +..+..++
T Consensus       244 ~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~----~~-~-~~---~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~  314 (409)
T PLN02656        244 IVPGWRLGWFVTTDPSGSFRDPKIVERIKKYF----DI-L-GG---PATFIQAAVPTILEQTDESFFKKTINILKQSSDI  314 (409)
T ss_pred             cCcceeEEEEEEeCcccccccHHHHHHHHHHH----hh-h-cC---CCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            7778999999985432110  01100000000    00 0 01   12344445455542  22 24444  56666778


Q ss_pred             HHHHHHhcCC
Q 017569          352 SSFFVIHSSY  361 (369)
Q Consensus       352 l~~~L~~~g~  361 (369)
                      +.+.|++.+.
T Consensus       315 ~~~~L~~~~~  324 (409)
T PLN02656        315 CCDRIKEIPC  324 (409)
T ss_pred             HHHHHhhCCC
Confidence            8888888654

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.6e-19  Score=175.95  Aligned_cols=264  Identities=14%  Similarity=0.110  Sum_probs=184.6

Q ss_pred             ccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.+.. +++.+.+++.+++......|...++..++++++.+++.+.+|.+.+.   ...++|+|+++|+.+++.+
T Consensus        36 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~  112 (391)
T PRK08361         36 ISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDV---DNVIVTAGAYEATYLAFES  112 (391)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc---ccEEEeCChHHHHHHHHHH
Confidence            5555555543 34678888888776655556566789999999999998888765321   3589999999999988887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +..+             ++.|++++++|..+...+...|++++.+|++++ ++.+|+++|++++++++++|++++|+|||
T Consensus       113 l~~~-------------g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPt  179 (391)
T PRK08361        113 LLEE-------------GDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPT  179 (391)
T ss_pred             hcCC-------------CCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCC
Confidence            6442             468999999999999999999999999999753 47899999999999999999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCC-CCCeEEEEE
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV-YAGVGWVVW  290 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~-p~g~g~l~~  290 (369)
                      |.+.|   +++|+++|+++      ++++++|++|+.+...  ......... ....+.++.+.+|.++. ..+.|++++
T Consensus       180 G~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~  251 (391)
T PRK08361        180 GATLDKEVAKAIADIAEDY------NIYILSDEPYEHFLYE--GAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIA  251 (391)
T ss_pred             CcCcCHHHHHHHHHHHHHc------CeEEEEEcccccceeC--CCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhcc
Confidence            99988   88999999999      9999999999875431  111111111 12346677889998753 344899987


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH----hhHHHH--HhhHHHHHHHHHHHhc
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF----EVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~----~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .+ +.. ..+.....+...        +.    ..+.+.++...+..    +.++++  +..++.+.+.+.|++.
T Consensus       252 ~~-~~~-~~~~~~~~~~~~--------~~----~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  312 (391)
T PRK08361        252 PE-QVI-KDMIKLHAYIIG--------NV----ASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEM  312 (391)
T ss_pred             CH-HHH-HHHHHHHhhhcc--------CC----ChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            43 222 221111111100        11    12334444444422    234444  6677777888888876

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.84  E-value=4.1e-19  Score=174.95  Aligned_cols=216  Identities=14%  Similarity=0.099  Sum_probs=163.6

Q ss_pred             CCCCccccccccC-----CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch
Q 017569           54 GNPRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        54 ~~p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (369)
                      +.+.++|+.+.|.     .+++.+.+++.+++..+. ..|....+..++++++.+++.+..|.+.+.   ..+++|+|++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~---~~v~it~G~~  127 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELST---DDIYLTAGCA  127 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCCh---hhEEEeCCHH
Confidence            4566777777664     234678888888886543 345555688999999999888777765422   4589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEE
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (369)
                      +|+.+++.++.++             +++|+++.|+|+.+...+...|++++.+++.+ +++.+|+++|+++++++++++
T Consensus       128 ~al~l~~~~l~~~-------------Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i  194 (430)
T PLN00145        128 QAIEIIMSVLAQP-------------GANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAM  194 (430)
T ss_pred             HHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEE
Confidence            9999988887542             47899999999999999999999999999753 458999999999999999999


Q ss_pred             EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEc-CccC-CC
Q 017569          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVS-GHKY-GL  280 (369)
Q Consensus       207 ~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~-~hK~-l~  280 (369)
                      ++++|+||||.+.+   +++|+++|+++      ++++++|++|..+...- .+..+. .+. .....++++ .-|. +.
T Consensus       195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~------~i~ii~De~Y~~~~~~~-~~~~~~~~~~-~~~~vi~~~S~SK~~~~  266 (430)
T PLN00145        195 VIINPNNPCGSVYSYEHLAKIAETARKL------GILVIADEVYDHLTFGS-KPFVPMGVFG-EVAPVLTLGSISKRWVV  266 (430)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEeccchhhccCC-CCccchhhhc-ccCcEEEEeccccccCC
Confidence            99999999999976   88899999999      99999999998754310 010111 111 112234444 4455 78


Q ss_pred             CCCCeEEEEEeCC
Q 017569          281 VYAGVGWVVWRTK  293 (369)
Q Consensus       281 ~p~g~g~l~~~~~  293 (369)
                      ..+.+|+++..++
T Consensus       267 pG~RlG~iv~~~~  279 (430)
T PLN00145        267 PGWRLGWIATCDP  279 (430)
T ss_pred             CCeeEEEEEEecc
Confidence            8899999998543

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.84  E-value=6.1e-19  Score=164.88  Aligned_cols=299  Identities=13%  Similarity=0.034  Sum_probs=210.6

Q ss_pred             CCCCCCCHHHHHHHHHHhhhhcC---CCCccccccccCCChHHHHH---HHHHHhccCCCCCCC-CcchHHHHHHHHHHH
Q 017569           32 MPDNSMPKEAAYQVINDELMLDG---NPRLNLASFVTTWMEPECDK---LVMASINKNYVDMDE-YPVTTELQNRCVNMI  104 (369)
Q Consensus        32 ~p~~~~~~~~i~~~l~~~~~~~~---~p~~~l~~~~~~~~~~~v~~---~~~~~~~~n~~~~~~-~~~~~~le~~~~~~l  104 (369)
                      .|....|+-++++.+..+-..+-   +..+.|++...... +.+-+   ...++.+-.++.+.. .++..++..++.+||
T Consensus        40 ~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~N-p~~e~~~~~~p~f~~iHP~~pe~~vqG~l~li~~Lq~~L  118 (496)
T COG1003          40 PPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLN-PKAEMKPATWPEFANIHPFQPEEQVQGYLELIYELQEWL  118 (496)
T ss_pred             CCCccccHHHHHHHHHHHHhcccccccCccCCcccccccC-chhhcccccccchhhcCCCCChHHHHHHHHHHHHHHHHH
Confidence            34456788999999988766432   22344444222111 22111   222445556666543 458899999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc
Q 017569          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE  184 (369)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~  184 (369)
                      +++.|++.      ...=-..|+.+=+.++++++.....    .|. .++.++|+|+..|-..-..+.+.|.+|+.|+++
T Consensus       119 ~~ITG~Da------vsLQP~AGAqGE~aGll~Ir~YHe~----rG~-~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~  187 (496)
T COG1003         119 KEITGMDA------VSLQPNAGAQGEYAGLLAIRAYHES----RGE-GHRNICLIPDSAHGTNPASAAMAGFKVVVVKCD  187 (496)
T ss_pred             HHhcCCce------eeccCCCCcchhhHHHHHHHHHHHH----cCC-CcCcEEEeeccccCCChhhHhhcCceEEEEecC
Confidence            99999985      1233347778888888888765332    232 256799999999999999999999999999999


Q ss_pred             CCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc
Q 017569          185 EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF  263 (369)
Q Consensus       185 ~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  263 (369)
                      ++ |.+|+++|++++.+++.++.+|+|||- |.+ .+|.+|+++.+++      |..+..|||--..++...+|.     
T Consensus       188 ~~-G~VDlddLk~k~~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH~~------Gg~vY~DGANlNA~vG~~rPG-----  254 (496)
T COG1003         188 EN-GNVDLDDLRAKAEDNLAALMITNPSTL-GVFEEDIREICEIVHEA------GGQVYYDGANLNAIVGLARPG-----  254 (496)
T ss_pred             CC-CCccHHHHHHHhccceeEEEeccCccc-ccchhhHHHHHHHHHHc------CCEEEecCcchhhhhcccccc-----
Confidence            85 999999999999999999999999988 888 5799999999999      999999999654444323331     


Q ss_pred             cCCCCcEEEEcCccCCCC-----CCCeEEEEEeCCCCcccccccc------cCccCCCCCCccc----cCCcchhHHHHH
Q 017569          264 RLPLVKSINVSGHKYGLV-----YAGVGWVVWRTKDDLPDELVFH------INYLGSDQPTFTL----NFSKGSSQIIAQ  328 (369)
Q Consensus       264 ~~~~~Dsi~~~~hK~l~~-----p~g~g~l~~~~~~~~~~~~~~~------~~y~~~~~~~~~l----~~tr~~~~~l~~  328 (369)
                       ..|+|.+-+|.||.++.     ++|.|-+.+|..  +...+...      ..|.........+    ..--++...+..
T Consensus       255 -d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a  331 (496)
T COG1003         255 -DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIA  331 (496)
T ss_pred             -ccccceEEeecccccccCCCCCCCCCCceehHhh--ccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHH
Confidence             44899999999999644     467777888642  22222211      1111110000000    011123346889


Q ss_pred             HHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          329 YYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       329 ~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      |++++.+|.+|+++.  ...-||.|++.+|+.
T Consensus       332 ~~YI~~mG~~GL~~ase~AvLNANYia~rL~~  363 (496)
T COG1003         332 WAYIRMMGADGLKQASEVAVLNANYIARRLKG  363 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh
Confidence            999999999999999  899999999999984

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.84  E-value=3.4e-19  Score=174.23  Aligned_cols=278  Identities=11%  Similarity=0.007  Sum_probs=178.4

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccC-----C--CCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-----Y--VDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n-----~--~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      .++.+.+.+.-... +..+||.. .+++.++.+.+++...+...     .  ..+...+...++|+.+++++++++|.+.
T Consensus         5 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~   82 (402)
T cd00378           5 PEIAEIIKKENERQ-RETLELIA-SENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEY   82 (402)
T ss_pred             HHHHHHHHHHHHHH-HhCeeeec-cCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence            55666665543222 33455432 23345678888887655321     1  1122334567888888899999999975


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-----HhhhcceeEEEeccCC-
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-----ARYFEVELKEVKLEEG-  186 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~-----~~~~G~~v~~v~~~~~-  186 (369)
                      .      .++.+||++|+..++.++..+             +++|++++++|.++...     ++..|..++.++++.+ 
T Consensus        83 ~------~v~~~sgt~a~~~~l~~l~~~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (402)
T cd00378          83 A------NVQPHSGSQANLAVYFALLEP-------------GDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDP  143 (402)
T ss_pred             e------eeecCCcHHHHHHHHHHhcCC-------------CCEEEEecCccCccccccccccccccceeEEEecCCcCc
Confidence            1      344446789999888887542             46899999888754332     5667887777777543 


Q ss_pred             -ccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc
Q 017569          187 -YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR  264 (369)
Q Consensus       187 -~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  264 (369)
                       ++.+|++++++++. +++++|+++.+++  |...|+++|+++|+++      ++++++|++|..+..  ........+.
T Consensus       144 ~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~------~~~li~D~a~~~g~~--~~g~~~~~~~  213 (402)
T cd00378         144 ETGLIDYDALEKMALEFKPKLIVAGASAY--PRPIDFKRFREIADEV------GAYLLVDMAHVAGLV--AGGVFPNPLP  213 (402)
T ss_pred             ccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCcCHHHHHHHHHhc------CCEEEEEccchhhhh--hcccCCCccc
Confidence             58999999999995 5788888777755  5677999999999999      999999999643322  1111112222


Q ss_pred             CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH
Q 017569          265 LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF  343 (369)
Q Consensus       265 ~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~  343 (369)
                        ++|.++.++|||+.+|.| |++++.+++.. ..+... ..+.         .++.......++..++..+...++.++
T Consensus       214 --~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~-~~l~~~~~~~~---------~~~~~~~~~~a~~~al~~~~~~~~~~~  280 (402)
T cd00378         214 --GADVVTTTTHKTLRGPRG-GLILTRKGELA-KKINSAVFPGL---------QGGPHLHVIAAKAVALKEALEPEFKAY  280 (402)
T ss_pred             --CCcEEEeccccCCCCCCc-eEEEeccHHHH-HHHHHHhCccc---------cCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence              679999999999966665 66666543332 222110 0111         122222233444445554433345555


Q ss_pred             --HhhHHHHHHHHHHHhcCC
Q 017569          344 --CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       344 --~~~~~a~~l~~~L~~~g~  361 (369)
                        +..++++++++.|.+.|+
T Consensus       281 ~~~~~~~~~~l~~~L~~~g~  300 (402)
T cd00378         281 AKQVVENAKALAEALKERGF  300 (402)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence              889999999999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK09082 methionine aminotransferase; Validated

Probab=99.84  E-value=1.7e-19  Score=175.41  Aligned_cols=269  Identities=14%  Similarity=0.018  Sum_probs=186.1

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+.+.+... ++.+.+.+.++++.....|....+..++++++.+++++++|.+.+.  ...+++|+|+++|+.+++
T Consensus        31 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~--~~~i~~t~G~~~al~~~~  108 (386)
T PRK09082         31 GAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA--DSEITVTAGATEALFAAI  108 (386)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCHHHHHHHHH
Confidence            3456666555533 4677888888776555556666789999999999999999986522  124889999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .++.++             +++|+++.++|..+..+++..|++++.+|++++++.+|++++++++++++++|+++.|+||
T Consensus       109 ~~~~~~-------------gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NP  175 (386)
T PRK09082        109 LALVRP-------------GDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNP  175 (386)
T ss_pred             HHHcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCC
Confidence            876542             4789999999999999999999999999997556899999999999988999999999999


Q ss_pred             cccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          215 TGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       215 tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      ||.+   +++++|.++|+++      ++++++|.+|+.+...- .+... ..+. ...-..+..+..|.++ ...++|++
T Consensus       176 tG~~~~~~~~~~i~~~a~~~------~i~li~De~y~~~~~~~-~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~i  248 (386)
T PRK09082        176 SGTVWSAADMRALWQLIAGT------DIYVLSDEVYEHIVFDG-AGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYC  248 (386)
T ss_pred             CCcCCCHHHHHHHHHHHHHC------CEEEEEehhhhhhccCC-CCCCChhhCcCccCcEEEEeechhhccchhhhhhhh
Confidence            9987   6789999999999      99999999998754310 01000 0111 1122344556789874 56678999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.. ++.+ ..+.....+..     +    +-   ..+.++++...+  ..+-++++  ...++.+++.+.|++.|
T Consensus       249 v~~-~~l~-~~~~~~~~~~~-----~----~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  310 (386)
T PRK09082        249 VAP-AALS-AEFRKVHQYNT-----F----TV---NTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSR  310 (386)
T ss_pred             hCC-HHHH-HHHHHHHhhhc-----C----CC---ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            863 2222 22211111110     0    11   122222223333  23334444  66778888888888754

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.84  E-value=1.5e-18  Score=170.02  Aligned_cols=231  Identities=14%  Similarity=0.111  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHhhhhcCC-CCccccccccC-----CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 017569           39 KEAAYQVINDELMLDGN-PRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTP  111 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~-p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~  111 (369)
                      ..+..+.+.+.+..+.+ +.++|+.+.|.     ++++.+.+++.++++.. ...|....+..++++++.+++.+.+|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~   94 (409)
T PLN00143         15 IDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ   94 (409)
T ss_pred             HHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            55666666665544444 44678877775     45677888888888754 3446566788999999999998877765


Q ss_pred             CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCcccc
Q 017569          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVM  190 (369)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~  190 (369)
                      .+.   ..+++|+|+++++.+++.++.++             ++.|+++.|+|+.+...++..|++++.++++ ++++.+
T Consensus        95 ~~~---~~I~it~G~~~al~~~~~~l~~~-------------gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  158 (409)
T PLN00143         95 LSP---DDVYLTLGCKHAAEIIIKVLARP-------------EANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEV  158 (409)
T ss_pred             CCH---hhEEEecChHHHHHHHHHHHcCC-------------CCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcC
Confidence            422   35899999999999998887552             4789999999999999999999999999985 345889


Q ss_pred             CHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCC
Q 017569          191 NPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLP  266 (369)
Q Consensus       191 d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~  266 (369)
                      |+++|+++++++++.+++++|+||||.+.+   +++|.++|+++      ++++++|++|..+...- .+..+ ..+. .
T Consensus       159 d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~-~~~~~~~~~~-~  230 (409)
T PLN00143        159 DLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKL------GILVIADEVYGHIVFGS-KPFVPMGLFA-S  230 (409)
T ss_pred             CHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHc------CCeEEEEccccccccCC-CCCcchhhhc-c
Confidence            999999999888999999999999999965   77888999999      99999999998754310 00011 0111 1


Q ss_pred             CCcE-EEEcCccC-CCCCCCeEEEEEeCC
Q 017569          267 LVKS-INVSGHKY-GLVYAGVGWVVWRTK  293 (369)
Q Consensus       267 ~~Ds-i~~~~hK~-l~~p~g~g~l~~~~~  293 (369)
                      .... +..+.-|. +....++|+++..++
T Consensus       231 ~~~vi~~~SfSK~f~~pGlRvG~~v~~~p  259 (409)
T PLN00143        231 IVPVITLGSISKRWMIPGWGLGWLVTCDP  259 (409)
T ss_pred             cCcEEEEccchhhcCCCccceEEEEeeCc
Confidence            1123 33457787 777899999998543

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.84  E-value=2.2e-19  Score=174.23  Aligned_cols=249  Identities=10%  Similarity=0.007  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (369)
                      +...+++.+++..+...  .++...+||++    +++++|.+.       .++++|||+|+.+++.++ ..         
T Consensus        14 ~~e~~~~~~~l~~~~~~--~g~~~~~le~~----la~~~g~~~-------~v~~~sgt~al~lal~al~~~---------   71 (379)
T PRK11658         14 DEELAAVKEVLRSGWIT--TGPKNQALEQA----FCQLTGNQH-------AIAVSSATAGMHITLMALGIG---------   71 (379)
T ss_pred             HHHHHHHHHHHHcCCcc--CCHhHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHcCCC---------
Confidence            44466677777665443  34566777766    888888874       788999999999988876 22         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                          .+++|++++++|.++..++...|++++.++++.+++.+|+++|+++++++|++|+   +++++|.+.|+++|.++|
T Consensus        72 ----~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a  144 (379)
T PRK11658         72 ----PGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIG  144 (379)
T ss_pred             ----CCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHH
Confidence                1478999999999999999999999999999876688999999999999998876   566789999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-cccCcc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-FHINYL  307 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~~~~y~  307 (369)
                      +++      ++++++|+|++.+..  ...   ......+++.++++.+|++.++.| |+++..+++.....-. ....+.
T Consensus       145 ~~~------gi~vi~D~a~a~g~~--~~~---~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~  212 (379)
T PRK11658        145 ERY------GIPVIEDAAHAVGTY--YKG---RHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLG  212 (379)
T ss_pred             HHc------CCeEEEECCCccCCe--ECC---eecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCC
Confidence            999      999999999985443  111   112233568889999999866543 6666655543321100 011100


Q ss_pred             C--------CCCCCc--cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          308 G--------SDQPTF--TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       308 ~--------~~~~~~--~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .        ....++  ...|+..-.  ..+-+++.....+++.+.  +..++++++.+.|.+.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~G~n~~~--~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        213 VDAFDRQTQGRAPQAEVLTPGYKYNL--ADINAAIALVQLAKLEALNARRREIAARYLQALADLPF  276 (379)
T ss_pred             cchhhhhcccCCCcceeeccccccCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            0        000000  001221111  122344444444677776  899999999999988764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.84  E-value=8e-19  Score=176.88  Aligned_cols=213  Identities=11%  Similarity=0.039  Sum_probs=159.6

Q ss_pred             cCCCCccccccccC---C-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           53 DGNPRLNLASFVTT---W-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        53 ~~~p~~~l~~~~~~---~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .++..++|+.+.|.   + +++.+.+.+.+++.. ...|....+..+|++++.+++.+..+.+.+   ...+++|+|+++
T Consensus       144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~---~~~I~it~G~~e  219 (517)
T PRK13355        144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVD---VDDIYTGNGVSE  219 (517)
T ss_pred             cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCC---hhHEEEeCcHHH
Confidence            45555667666663   2 256677777776653 334556668899999988888765443221   135899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEE
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      ++.+++.++.++             +++|+++.|+|+.+...++..|+.++.+++++ ++|.+|+++|++++++++++|+
T Consensus       220 al~~~~~~l~~~-------------Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~  286 (517)
T PRK13355        220 LINLSMSALLDD-------------GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIV  286 (517)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEE
Confidence            999998887542             47999999999999999999999999999875 3589999999999999999999


Q ss_pred             EeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEE-cCccC-CC
Q 017569          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINV-SGHKY-GL  280 (369)
Q Consensus       208 ~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~-~~hK~-l~  280 (369)
                      +++|+||||.+.+   +++|+++|+++      ++++++|++|..+.+.  .... ..+.  ......+++ +..|. ++
T Consensus       287 i~nP~NPTG~v~~~~~l~~i~~~a~~~------~~~ii~DE~Y~~~~~~--~~~~-~s~~~~~~~~~vi~~~S~SK~~~~  357 (517)
T PRK13355        287 IINPNNPTGALYPREVLQQIVDIAREH------QLIIFSDEIYDRLVMD--GLEH-TSIASLAPDLFCVTFSGLSKSHMI  357 (517)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEehhhhhhcCC--CCCc-ccHHHhCCCCeEEEEecchhhccC
Confidence            9999999999966   88999999999      9999999999875431  1011 1111  122234444 45776 56


Q ss_pred             CCCCeEEEEEe
Q 017569          281 VYAGVGWVVWR  291 (369)
Q Consensus       281 ~p~g~g~l~~~  291 (369)
                      .++.+|++++.
T Consensus       358 ~G~RiG~~i~~  368 (517)
T PRK13355        358 AGYRIGWMILS  368 (517)
T ss_pred             cccceEEEEee
Confidence            78899999874

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.84  E-value=4.7e-19  Score=174.04  Aligned_cols=254  Identities=11%  Similarity=-0.002  Sum_probs=166.3

Q ss_pred             CChHHHHHHHHHHhccC-C-CCCC-----CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN-Y-VDMD-----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n-~-~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ++++.+.+++..++... . +.+.     .......+|+.+++++++++|++..      .++.++|++|+..++.++..
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~------~i~~~sgt~al~~~l~~l~~  109 (416)
T PRK00011         36 FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYA------NVQPHSGSQANAAVYFALLK  109 (416)
T ss_pred             cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce------eeecCCchHHHHHHHHHhcC
Confidence            35677888876664321 1 1111     1123556777678899999999852      24444678899887777643


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHH---H--HhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCC
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEK---F--ARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~---~--~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (369)
                      +             +++|+++.++|.++..   .  ....|++++.++++.+++.+|+++|++++++ +|++|+++.  +
T Consensus       110 ~-------------gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~--~  174 (416)
T PRK00011        110 P-------------GDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGA--S  174 (416)
T ss_pred             C-------------CCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECC--C
Confidence            2             4689999999875421   1  1234677888888754589999999999975 788887654  3


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .+|...|+++|+++|+++      ++++++|+||+.+...  ....+..+.  ++|.++.++|||+.+|.| |++++.++
T Consensus       175 ~~~~~~~~~~I~~la~~~------~~~livD~a~~~g~~~--~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~  243 (416)
T PRK00011        175 AYSRPIDFKRFREIADEV------GAYLMVDMAHIAGLVA--AGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDE  243 (416)
T ss_pred             cCCCccCHHHHHHHHHHc------CCEEEEECcchhcccc--cCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCH
Confidence            456778999999999999      9999999998654331  111122232  789999999999876665 66766543


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.. ..+.. ..+.+       ..++......++++.++.....+++.++  +..++++++++.|++.|+
T Consensus       244 ~~~-~~l~~-~~~~~-------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  304 (416)
T PRK00011        244 ELA-KKINS-AVFPG-------IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGF  304 (416)
T ss_pred             HHH-HHHHH-HhCcc-------ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            332 22211 11110       0122223334555555555555676666  899999999999999874

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.84  E-value=3.6e-19  Score=173.48  Aligned_cols=262  Identities=13%  Similarity=-0.009  Sum_probs=173.3

Q ss_pred             CCCCcccccccc-C-CChHHHHHHHHHHhccCCCCCCCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           54 GNPRLNLASFVT-T-WMEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        54 ~~p~~~l~~~~~-~-~~~~~v~~~~~~~~~~n~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      +...++|+++.+ + +.+|.+.+++.+++......+..+.   +...+..++++.+++++|.+.       .++++||++
T Consensus        37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~-------~ii~~~~~~  109 (393)
T TIGR01822        37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTED-------TILYASCFD  109 (393)
T ss_pred             CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEECchHH
Confidence            333355555442 2 3357788887777765322333333   545555667777999999864       688889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------c
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------N  202 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~  202 (369)
                      |+..++.++.++             ++.|++++++|+++...++..+.....++      .+|+++|++++++      +
T Consensus       110 a~~~~~~~l~~~-------------gd~vi~~~~~~~s~~~~~~~~~~~~~~~~------~~d~~~l~~~i~~~~~~~~~  170 (393)
T TIGR01822       110 ANGGLFETLLGA-------------EDAIISDALNHASIIDGVRLCKAKRYRYA------NNDMADLEAQLKEARAAGAR  170 (393)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEeccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhhhcCCC
Confidence            998777665331             47899999999999998888877654332      3688999998875      6


Q ss_pred             CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--cccccCCCCcEEEEcCccCCC
Q 017569          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +++|++...+|++|.+.|+++|+++|+++      ++++++|++|+.+..+......  ..+. ...+|.++.++||+++
T Consensus       171 ~~~v~~~~v~~~tG~~~~l~~i~~la~~~------~~~li~De~~~~g~~~~~~~~~~~~~~~-~~~~di~~~s~sK~l~  243 (393)
T TIGR01822       171 HRLIATDGVFSMDGVIAPLDEICDLADKY------DALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALG  243 (393)
T ss_pred             ceEEEEeCCccCCCCcCCHHHHHHHHHHc------CCEEEEECCccccCcCCCCCchHHhcCC-CCCCeEEEEEChHHhh
Confidence            78888888899999999999999999999      9999999999654431100000  0111 2368999999999986


Q ss_pred             CCCCeEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHH
Q 017569          281 VYAGVGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                      + +..|+++.++ +.. ..+.. ...+        ...++.+....+++..+++.+  ++.+++  +..++.+++.+.|+
T Consensus       244 g-~r~G~~~~~~-~~~-~~l~~~~~~~--------~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~  310 (393)
T TIGR01822       244 G-ASGGFTTARK-EVV-ELLRQRSRPY--------LFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERME  310 (393)
T ss_pred             C-CCcEEEEeCH-HHH-HHHHHhCccc--------eecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHH
Confidence            5 4568877642 222 22211 0111        112333333233445555554  233334  88899999999998


Q ss_pred             hcCC
Q 017569          358 HSSY  361 (369)
Q Consensus       358 ~~g~  361 (369)
                      +.|+
T Consensus       311 ~~g~  314 (393)
T TIGR01822       311 AAGF  314 (393)
T ss_pred             HcCC
Confidence            8764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK07337 aminotransferase; Validated

Probab=99.84  E-value=5e-19  Score=172.32  Aligned_cols=264  Identities=14%  Similarity=0.046  Sum_probs=182.2

Q ss_pred             ccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|..+.+.. +++.+.+.+.+++..+...|....+..++++++.+++.+.+|.+.+.   ...++|+|+++|+.+++.+
T Consensus        33 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~t~G~~~al~~~~~~  109 (388)
T PRK07337         33 IHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAP---ERIVVTAGASAALLLACLA  109 (388)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HhEEEecCcHHHHHHHHHH
Confidence            4555555543 34667888887776555555556678999999999999888875422   3488999999999888877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +.++             +++|++++++|..+...++..|++++.+|+++ +++.+|+++|++.+++++++|++++|+|||
T Consensus       110 l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt  176 (388)
T PRK07337        110 LVER-------------GDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPT  176 (388)
T ss_pred             hcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCC
Confidence            6442             47899999999999999999999999999974 458999999999999899999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE-cCccCCC-CCCCeEEEEE
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV-SGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~-~~hK~l~-~p~g~g~l~~  290 (369)
                      |.+.+   +++|+++|+++      ++++++|.+|..+..   .+. .........+.+++ +..|.++ ....+|+++.
T Consensus       177 G~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~---~~~-~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~  246 (388)
T PRK07337        177 GTSIAPDELRRIVEAVRAR------GGFTIVDEIYQGLSY---DAA-PVSALSLGDDVITINSFSKYFNMTGWRLGWLVV  246 (388)
T ss_pred             CcCcCHHHHHHHHHHHHHC------CCEEEEecccccccc---CCC-CcChhhccCCEEEEEechhhcCCchhheeeeec
Confidence            99854   78888999999      999999999986432   111 11111112345544 6889874 5567899987


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh---hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE---VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~---G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+. .. ..+.....+..         .+   ...+.+++++..+...   -+.+.  +..+..+++.+.|++.|.
T Consensus       247 ~~~-l~-~~l~~~~~~~~---------~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~  308 (388)
T PRK07337        247 PEA-LV-GTFEKLAQNLF---------IC---ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGF  308 (388)
T ss_pred             CHH-HH-HHHHHHHHHhc---------cC---CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            432 21 22111001110         00   1133444444555322   23333  566677788888887764

>PRK08363 alanine aminotransferase; Validated

Probab=99.83  E-value=7.9e-19  Score=171.48  Aligned_cols=214  Identities=14%  Similarity=0.024  Sum_probs=161.2

Q ss_pred             cCCCCccccccccC----CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        53 ~~~p~~~l~~~~~~----~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .+.+.++|+.+.|.    ++++.+.+++.+++......|...++..++++++.+++.+.+|...+.   ...++|+|+++
T Consensus        28 ~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~  104 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITP---DDVRVTAAVTE  104 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHH
Confidence            44556777777773    345677888887775443345556788999999999888877755322   35899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEE-eccCCccccCHHHHHHHHhhcCcEEE
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV-KLEEGYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v-~~~~~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      |+.+++.++.++             ++.|+++.++|..+...++.+|+.++.+ +.+++++.+|+++|++++.+++++|+
T Consensus       105 al~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  171 (398)
T PRK08363        105 ALQLIFGALLDP-------------GDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIA  171 (398)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEE
Confidence            999988877442             4789999999999999999999988888 55555678999999999988899999


Q ss_pred             EeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCC-CcEE-EEcCccC-CCC
Q 017569          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL-VKSI-NVSGHKY-GLV  281 (369)
Q Consensus       208 ~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~-~Dsi-~~~~hK~-l~~  281 (369)
                      +++|+||||.+.+   +++|+++|+++      ++++++|++|+.+..   .+.......... ...+ ..+..|+ +..
T Consensus       172 l~~p~NPtG~~~~~~~~~~l~~~a~~~------~~~li~Deay~~~~~---~~~~~~~~~~~~~~~vi~~~SfSK~~~~~  242 (398)
T PRK08363        172 VINPNNPTGALYEKKTLKEILDIAGEH------DLPVISDEIYDLMTY---EGKHVSPGSLTKDVPVIVMNGLSKVYFAT  242 (398)
T ss_pred             EECCCCCCCcCcCHHHHHHHHHHHHHc------CeEEEEhhhhhhhcc---CCcccCHHHcCcCCcEEEEecchhccCCc
Confidence            9999999999865   88999999999      999999999987533   111100011111 1234 3468898 667


Q ss_pred             CCCeEEEEEe
Q 017569          282 YAGVGWVVWR  291 (369)
Q Consensus       282 p~g~g~l~~~  291 (369)
                      +.++|++++.
T Consensus       243 GlRiG~~~~~  252 (398)
T PRK08363        243 GWRLGYIYFV  252 (398)
T ss_pred             cceEEEEEEe
Confidence            7899999983

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=1.8e-19  Score=174.48  Aligned_cols=220  Identities=14%  Similarity=0.014  Sum_probs=161.8

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |....||+.    ++++.|.+.       +++++||++|+..++.++..+             +++|+++.+.|......
T Consensus        53 pt~~~Le~~----lA~leg~e~-------ivvt~gg~~Ai~~~l~all~~-------------Gd~Il~~~~~y~~~~~~  108 (388)
T PRK08861         53 PNRGLLEQT----LSELESGKG-------AVVTNCGTSALNLWVSALLGP-------------DDLIVAPHDCYGGTYRL  108 (388)
T ss_pred             chHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHHcCC-------------CCEEEEcCCchHHHHHH
Confidence            456666666    888988754       899999999999998887432             47899999988754332


Q ss_pred             ----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 ----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                          ....|+++++++.      .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       109 ~~~~~~~~gi~v~~vd~------~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~------gi~vIvDea  176 (388)
T PRK08861        109 FNTRANKGDFKVQFVDQ------SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV------GALVAVDNT  176 (388)
T ss_pred             HHHHHhcCCeEEEEECC------CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECC
Confidence                2234666666642      378999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |..+..  ..   +.+   .++|.++.|+|||+++|.+  .|+++.++++.. +.+.....+.+            ....
T Consensus       177 ~~~~~~--~~---pl~---~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~-~~~~~~~~~~G------------~~~~  235 (388)
T PRK08861        177 FLTPVL--QK---PLE---LGADFVIHSTTKYINGHSDVIGGVLITKTKEHA-EELAWWGNCIG------------ATGT  235 (388)
T ss_pred             cccccc--CC---Ccc---cCCCEEEeecceeccCCCcceeEEEEecHHHHH-HHHHHHHhccC------------CCCC
Confidence            986543  11   122   3799999999999998876  577766554322 11111001111            1223


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +...|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       236 p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~y  278 (388)
T PRK08861        236 PFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYH  278 (388)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            6678877777765555433999999999999999998876544

>PRK07324 transaminase; Validated

Probab=99.83  E-value=4.7e-19  Score=171.56  Aligned_cols=221  Identities=13%  Similarity=0.019  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhhh--hcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 017569           39 KEAAYQVINDELM--LDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADD  115 (369)
Q Consensus        39 ~~~i~~~l~~~~~--~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~  115 (369)
                      .++.++.......  +.++...+++.+.+... ++.+ +++.++++.....|....+..+|++++.+++.   +.++   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~~~~---   80 (373)
T PRK07324          8 VEEWLNVYEKSATYDIAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---NVKP---   80 (373)
T ss_pred             HHHHHHHhhccCccccccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---CCCh---
Confidence            4444444433332  23445555555555433 2345 77777777766677766788888888555543   3443   


Q ss_pred             CCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHH
Q 017569          116 KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVK  194 (369)
Q Consensus       116 ~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~  194 (369)
                        ..+++|+|+++|+.+++.++.++             +++|+++.|+|..+...++..|++++.+|+++ +++.+|+++
T Consensus        81 --~~vi~t~G~~~al~~~~~~l~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~  145 (373)
T PRK07324         81 --ENILQTNGATGANFLVLYALVEP-------------GDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDE  145 (373)
T ss_pred             --hhEEEcCChHHHHHHHHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHH
Confidence              34899999999999998887542             46899999999999999999999999999975 447899999


Q ss_pred             HHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEE
Q 017569          195 AVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       195 L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi  271 (369)
                      |++++++++++|++++|+||||.+-+   +++|+++|+++      ++++++|++|......   +....-.....-...
T Consensus       146 l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~------~~~ii~De~y~~l~~~---~~~~s~~~~~~~~I~  216 (373)
T PRK07324        146 LRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSV------DAYVLSDEVYRPLDED---GSTPSIADLYEKGIS  216 (373)
T ss_pred             HHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEccccccccC---CCCCChhhccCCEEE
Confidence            99999999999999999999999977   89999999999      9999999999874431   111101111111123


Q ss_pred             EEcCccCCC-CCCCeEEEEE
Q 017569          272 NVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       272 ~~~~hK~l~-~p~g~g~l~~  290 (369)
                      ..+..|.++ .+++.|+++.
T Consensus       217 ~~s~SK~~~~~G~RiG~i~~  236 (373)
T PRK07324        217 TNSMSKTYSLPGIRVGWIAA  236 (373)
T ss_pred             EecchhhcCCccceeEEEec
Confidence            346789765 5678899987

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.83  E-value=1.5e-19  Score=175.36  Aligned_cols=254  Identities=9%  Similarity=-0.031  Sum_probs=175.4

Q ss_pred             cCCChHH-HHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeC-CchHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPE-CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV-GSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        65 ~~~~~~~-v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~-Ggt~a~~~al~~~~~~~~  142 (369)
                      |+..++. +.+++...+-.+.   ..++...++.+++++.+++++|++.+    ...++++ +||+++..++..+...  
T Consensus        20 p~~~~~~~v~~a~~~~~~~~~---hr~~~f~~~~~~~r~~l~~l~~~~~~----~~v~~~~gs~T~~~~~~~~~l~~~--   90 (378)
T PRK03080         20 PCKKRPGWQLEALADALLGRS---HRQKPVKALLKRVIEGTRELLSLPEG----YEVGIVPGSDTGAWEMALWSLLGA--   90 (378)
T ss_pred             CcCCChHHHHHHHHhhhcccC---cCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCchHHHHHHHHHhcCCC--
Confidence            3444455 7777765432211   12345678888999999999999642    2367675 8999998888776320  


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHH--HHhhhcc-eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCC
Q 017569          143 QKRKEQGKPYDKPNIVTGANVQVCWEK--FARYFEV-ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       143 ~~~~~~g~~~~~~~Vi~s~~~h~s~~~--~~~~~G~-~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (369)
                                ++..|+. ...|.+-..  +++.+|+ +++.++.+.+ ..+|+++++    . ++.|.+++.+|.||.+.
T Consensus        91 ----------~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g-~~~d~~~i~----~-~~~V~~~h~~t~tG~~~  153 (378)
T PRK03080         91 ----------RRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYG-SLPDLSAVD----F-DRDVVFTWNGTTTGVRV  153 (378)
T ss_pred             ----------CcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCC-CCCCHhhcC----C-CCCEEEEecCCccceec
Confidence                      1234554 446655333  3466799 9999988753 678877743    2 56789999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      |+++|++  +++      +++++||++++.+..       +++++  .+|.+..++|||+++|+|.|+++++++. +...
T Consensus       154 pi~~I~~--~~~------g~~~vVDa~qs~G~~-------pidv~--~iD~~~~s~~K~l~~P~G~g~l~v~~~~-~~~~  215 (378)
T PRK03080        154 PVARWIG--ADR------EGLTICDATSAAFAL-------PLDWS--KLDVYTFSWQKVLGGEGGHGMAILSPRA-VERL  215 (378)
T ss_pred             cchhhcc--ccC------CCeEEEecccccccC-------CCCHH--HCcEEEEehhhhCCCCCceEEEEECHHH-HHhh
Confidence            9999999  778      999999999998766       24443  4799999999999999999999998642 2110


Q ss_pred             ccccc-----CccC--C----CC--CCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          300 LVFHI-----NYLG--S----DQ--PTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       300 ~~~~~-----~y~~--~----~~--~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .....     .|..  .    ..  .+....+|.+.....++..+|+.+..+ |++.+  |+.+++++++++|+++|.+
T Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~  294 (378)
T PRK03080        216 ESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWA  294 (378)
T ss_pred             hcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            00001     1110  0    00  011112345555556667899999887 89888  9999999999999998854

>PLN02721 threonine aldolase

Probab=99.83  E-value=2.8e-19  Score=171.56  Aligned_cols=200  Identities=14%  Similarity=0.072  Sum_probs=137.6

Q ss_pred             ccccccCCChHHHHHHHHHH-hccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMAS-INKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~-~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (369)
                      |++..++.+.+.+.+++... .+....  ...+...++|++    +++++|.+.       ++++++|+++++.++.+..
T Consensus        10 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~----la~~~~~~~-------~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721         10 LRSDTVTKPTDAMRAAMANAEVDDDVL--GYDPTALRLEEE----MAKIFGKEA-------ALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             hhcccccCCCHHHHHHHHhccCCCccc--CCCHHHHHHHHH----HHHHhCCce-------eEEecCccHHHHHHHHHHc
Confidence            34444444556677776653 222222  224445566655    788888764       6888888999887777754


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHH---HHhhhcceeEEEeccCCccccCHHHHHHHHh-------hcCcEEEE
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVD-------ENTICVAA  208 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-------~~~~~v~~  208 (369)
                      ..            .+++|++++++|+++.+   .+...|++++.+|.+++ +.+|+++|+++++       +++++|++
T Consensus        77 ~~------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l  143 (353)
T PLN02721         77 DV------------RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNED-GTMDLDAIEAAIRPKGDDHFPTTRLICL  143 (353)
T ss_pred             cC------------CCCeEEEcCccceehhcccchhhhcCceeEecCCCcC-CCcCHHHHHHHHHhccCCCCCcceEEEE
Confidence            31            14789999999987665   56778999999998764 8899999999998       57888888


Q ss_pred             ee-CCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC
Q 017569          209 IL-GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG  284 (369)
Q Consensus       209 ~~-~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g  284 (369)
                      +. ++||+|.+.|   +++|.++|+++      |+++|+|+||..+... ... ...+-...++|++++++|||+.+|.|
T Consensus       144 ~~~~~np~G~~~~~~~l~~l~~l~~~~------g~~livD~a~~~~~~~-~~~-~~~~~~~~~~d~~~~s~sK~l~~~~G  215 (353)
T PLN02721        144 ENTHANCGGRCLSVEYTDKVGELAKRH------GLKLHIDGARIFNASV-ALG-VPVHRLVKAADSVSVCLSKGLGAPVG  215 (353)
T ss_pred             eccccccCCccccHHHHHHHHHHHHHc------CCEEEEEchhhhcchh-hhC-CCHHHHhhhCCEEEEecccccCCcee
Confidence            66 5677888744   88999999999      9999999987532210 011 11111134789999999999986644


Q ss_pred             eEEEEEeCCCC
Q 017569          285 VGWVVWRTKDD  295 (369)
Q Consensus       285 ~g~l~~~~~~~  295 (369)
                        ++++.+++.
T Consensus       216 --~~~~~~~~~  224 (353)
T PLN02721        216 --SVIVGSKSF  224 (353)
T ss_pred             --eEEecCHHH
Confidence              344444433

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.83  E-value=1.8e-18  Score=168.63  Aligned_cols=266  Identities=11%  Similarity=0.024  Sum_probs=184.6

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      +.++|..+.+..+ ++.+.+++.++++.....|....+...+++++.+++.+.+|...+.   ...++|+|+++|+..++
T Consensus        32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~~~g~~~a~~~~~  108 (393)
T PRK05764         32 DVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDP---SQVIVTTGAKQALYNAF  108 (393)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCH---HHEEEeCCcHHHHHHHH
Confidence            3356666555543 4678888888776544455556688999999999998887754321   34899999999998888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      .++..+             ++.|++++++|..+..+++..|++++.+|+++ +++.+|++++++++++++++|++++|+|
T Consensus       109 ~~~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~N  175 (393)
T PRK05764        109 MALLDP-------------GDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSN  175 (393)
T ss_pred             HHhcCC-------------CCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCC
Confidence            876442             46899999999999999999999999999974 3578999999999988899999999999


Q ss_pred             CcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCC--ccccc--cCCCCcEEEEcCccCCC-CCCCe
Q 017569          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD--LEWDF--RLPLVKSINVSGHKYGL-VYAGV  285 (369)
Q Consensus       214 ~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~--~~~~~--~~~~~Dsi~~~~hK~l~-~p~g~  285 (369)
                      |||.+-   ++++|+++|+++      ++|+++|.+|+.+...  .+.  ....+  ....-+.+..+..|.++ ...++
T Consensus       176 PtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri  247 (393)
T PRK05764        176 PTGAVYSPEELEAIADVAVEH------DIWVLSDEIYEKLVYD--GAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL  247 (393)
T ss_pred             CCCcccCHHHHHHHHHHHHHC------CcEEEEeccccceeeC--CCCcccHHHcCCCCcCCEEEEecCcccccCcccee
Confidence            999984   588999999999      9999999999865431  111  00111  12234566667889975 33457


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--HhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |+++.. ++.. ..+..   +...    .    +- ....+.++++.+.+.  .+-+.++  +..++.+++++.|++.
T Consensus       248 G~i~~~-~~~~-~~~~~---~~~~----~----~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (393)
T PRK05764        248 GYAAGP-KELI-KAMSK---LQSH----S----TS-NPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI  311 (393)
T ss_pred             EEEecC-HHHH-HHHHH---HHhh----c----cc-CCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            888753 3222 22211   0000    0    00 112345555555553  2334444  6677888899999887

>PRK08960 hypothetical protein; Provisional

Probab=99.83  E-value=1.2e-18  Score=169.67  Aligned_cols=210  Identities=16%  Similarity=0.103  Sum_probs=160.2

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|..+.+.+ +++.+.+++.+++..+...|....+..++++++.+++.+.+|.+.+.   ..+++|+|+++++.+++
T Consensus        33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~al~~~~  109 (387)
T PRK08960         33 DVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDP---ERILVTPGGSGALLLAS  109 (387)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEEccCcHHHHHHHH
Confidence            345666666663 46778888888886554556566788999999999998887765422   35899999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      .++.++             ++.|++++++|+.+...++..|.+++.+|++++ ++.+|++++++++++++++++++.|+|
T Consensus       110 ~~~~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~N  176 (387)
T PRK08960        110 SLLVDP-------------GKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPAN  176 (387)
T ss_pred             HHhcCC-------------CCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCC
Confidence            776442             478999999999999999999999999999753 478999999999998899999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcE-EEEcCccCCC-CCCCeEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS-INVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds-i~~~~hK~l~-~p~g~g~l  288 (369)
                      |||.+.+   +++|+++|+++      ++++++|++|..+..   .+.....+... -+. +..+.+|.++ ....+|++
T Consensus       177 PtG~~~~~~~~~~l~~~~~~~------~~~li~De~Y~~~~~---~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~  246 (387)
T PRK08960        177 PTGTLLSRDELAALSQALRAR------GGHLVVDEIYHGLTY---GVDAASVLEVD-DDAFVLNSFSKYFGMTGWRLGWL  246 (387)
T ss_pred             CCCcCcCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCCChhhcc-CCEEEEeecccccCCcccEEEEE
Confidence            9999866   56677788999      999999999987433   11111111121 233 4456889874 56679999


Q ss_pred             EEe
Q 017569          289 VWR  291 (369)
Q Consensus       289 ~~~  291 (369)
                      +..
T Consensus       247 ~~~  249 (387)
T PRK08960        247 VAP  249 (387)
T ss_pred             EcC
Confidence            874

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.83  E-value=2e-18  Score=169.00  Aligned_cols=213  Identities=13%  Similarity=0.066  Sum_probs=159.0

Q ss_pred             CCccccccccC--CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           56 PRLNLASFVTT--WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        56 p~~~l~~~~~~--~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      +.++|..+.+.  ++++.+.+.+.++++.. ...|....+..++++++++|+++.+|.+.+.  ...+++|+|+++++.+
T Consensus        40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~--~~~I~it~Ga~~al~~  117 (405)
T PRK06207         40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDA--ADELIITPGTQGALFL  117 (405)
T ss_pred             CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCcHHHHHH
Confidence            33566655555  24466777777776543 3445556788999999999999999975421  1358999999999998


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC----CccccCHHHHHHHHhhcCcEEEE
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----GYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~----~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      ++.++.++             ++.|++++|+|+.+...++.+|++++.|+++.    +++.+|+++|++++++++++|++
T Consensus       118 ~~~~l~~~-------------Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l  184 (405)
T PRK06207        118 AVAATVAR-------------GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLF  184 (405)
T ss_pred             HHHHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEE
Confidence            88887542             47899999999999999999999999999862    24789999999999888999999


Q ss_pred             eeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cc-cccCCCCc-EEEEcCccCCC-C
Q 017569          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DFRLPLVK-SINVSGHKYGL-V  281 (369)
Q Consensus       209 ~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~~~~~D-si~~~~hK~l~-~  281 (369)
                      ++|+||||.+.+   +++|+++|+++      ++++++|++|+.+...  .... .. .+....-. .++.++.|.++ .
T Consensus       185 ~~P~NPTG~~~s~e~l~~l~~~a~~~------~~~iI~De~Y~~~~~~--~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp  256 (405)
T PRK06207        185 SNPNNPAGVVYSAEEIAQIAALARRY------GATVIVDQLYSRLLYD--GTSYTHLRALPIDPENVITIMGPSKTESLS  256 (405)
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccccccC--CCCCCchhcCCCCcCcEEEEecchhhccCc
Confidence            999999999965   77889999999      9999999999875431  1110 00 11111112 34455788876 5


Q ss_pred             CCCeEEEEEe
Q 017569          282 YAGVGWVVWR  291 (369)
Q Consensus       282 p~g~g~l~~~  291 (369)
                      +..+|+++..
T Consensus       257 GlRiG~ii~~  266 (405)
T PRK06207        257 GYRLGVAFGS  266 (405)
T ss_pred             ccceEEEEcC
Confidence            6779999753

>PRK08912 hypothetical protein; Provisional

Probab=99.83  E-value=1.4e-18  Score=169.04  Aligned_cols=214  Identities=14%  Similarity=0.012  Sum_probs=159.7

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+.+.|..+ ++.+.+.+.+.+......|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++++..++
T Consensus        27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~  104 (387)
T PRK08912         27 GAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDP--ETEVMVTSGATEALAAAL  104 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--cccEEEeCCcHHHHHHHH
Confidence            3356666555433 4556666666554444455556688999999999999888876422  125899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .++.++             ++.|+++.++|..+...++..|++++.+|++++++.+|+++|++.+.+++++|++++|+||
T Consensus       105 ~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NP  171 (387)
T PRK08912        105 LALVEP-------------GDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNP  171 (387)
T ss_pred             HHhcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCC
Confidence            776432             4689999999999999999999999999997645899999999999888999999999999


Q ss_pred             cccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       215 tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      ||.+.+   +++|.++|+++      ++++++|.+|+.+...- .+..+ ..+. ...-+.+..+..|.++ ....+|++
T Consensus       172 tG~~~s~~~~~~i~~~~~~~------~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~  244 (387)
T PRK08912        172 AGKVFPREELALLAEFCQRH------DAVAICDEVWEHVVFDG-RRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFV  244 (387)
T ss_pred             cCcccCHHHHHHHHHHHHHC------CeEEEEhhhhhhcccCC-CCCcChhhCCCccCceEEEeechhhccCcCceeEEE
Confidence            999865   77799999999      99999999998644310 01001 1111 1234567778999876 45678999


Q ss_pred             EEe
Q 017569          289 VWR  291 (369)
Q Consensus       289 ~~~  291 (369)
                      +..
T Consensus       245 ~~~  247 (387)
T PRK08912        245 CAA  247 (387)
T ss_pred             ecC
Confidence            874

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.82  E-value=4.4e-18  Score=166.31  Aligned_cols=269  Identities=9%  Similarity=-0.018  Sum_probs=181.5

Q ss_pred             CCCccccccccC-CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           55 NPRLNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        55 ~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      +..++|+.+.+. ++++.+.+.+.++++.. ...|. ..+..++++++.+++.+..|.+.+.  ...+++|+|+++++.+
T Consensus        32 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~--~~~I~it~G~~~al~~  108 (399)
T PRK07681         32 HKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA--DKEVLLLMGSQDGLVH  108 (399)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC--CCeEEECCCcHHHHHH
Confidence            344556555554 33566788888777542 22222 3688899999999999888876421  1358899999999988


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++.++             ++.|++++|+|+.+...++.+|++++.+|++++ ++.+|++++++++.+++++|++++|
T Consensus       109 ~~~~~~~~-------------Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P  175 (399)
T PRK07681        109 LPMVYANP-------------GDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFP  175 (399)
T ss_pred             HHHHhCCC-------------CCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCC
Confidence            88776542             478999999999999999999999999999753 4789999999999888999999999


Q ss_pred             CCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCC---CCcEEEEcCccCCC-CCCC
Q 017569          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP---LVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       212 ~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~---~~Dsi~~~~hK~l~-~p~g  284 (369)
                      +||||.+.+   +++|+++|+++      ++++++|.+|+.+...  ...........   .-..+..+..|.++ .+..
T Consensus       176 ~NPTG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  247 (399)
T PRK07681        176 GNPVPAMAHEDFFKEVIAFAKKH------NIIVVHDFAYAEFYFD--GNKPISFLSVPGAKEVGVEINSLSKSYSLAGSR  247 (399)
T ss_pred             CCCcCcCCCHHHHHHHHHHHHHc------CeEEEEeccchhheeC--CCCCCChhhCCCCcccEEEEeecccccCCccce
Confidence            999999966   78899999999      9999999999875531  11100111111   11233446889874 5677


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +|+++.. ++.. ..+.....+.     .    .+-   ..+.++++...+  +.+-+++.  +..++.+++.+.|++.|
T Consensus       248 iG~~i~~-~~l~-~~~~~~~~~~-----~----~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  313 (399)
T PRK07681        248 IGYMIGN-EEIV-RALTQFKSNT-----D----YGV---FLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFG  313 (399)
T ss_pred             eEEEecC-HHHH-HHHHHHHhhc-----c----cCC---CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999863 3232 2221100000     0    011   123344444444  22223333  56677778888998876


Q ss_pred             C
Q 017569          361 Y  361 (369)
Q Consensus       361 ~  361 (369)
                      +
T Consensus       314 ~  314 (399)
T PRK07681        314 W  314 (399)
T ss_pred             C
Confidence            3

>PRK07682 hypothetical protein; Validated

Probab=99.82  E-value=1.2e-18  Score=169.04  Aligned_cols=268  Identities=11%  Similarity=0.052  Sum_probs=185.0

Q ss_pred             CccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+.+.+... ++.+.+++.+.+......|...++..++++++.+++.+.+|.+.+.  ...+++|+|+++|+.+++.
T Consensus        22 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~   99 (378)
T PRK07682         22 VISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDP--NDEIIVTVGASQALDVAMR   99 (378)
T ss_pred             eEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHH
Confidence            355555555433 3456777777665444556556789999999999999988875421  1248999999999998887


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ++.++             ++.|++++++|..+...++..|..++.++++. +++.+|+++|++++.+++++|+++.|+||
T Consensus       100 ~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NP  166 (378)
T PRK07682        100 AIINP-------------GDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNP  166 (378)
T ss_pred             HhCCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCC
Confidence            76542             47899999999999999999999999998863 35899999999999888999999999999


Q ss_pred             cccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       215 tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      ||.+.   ++++|.++|+++      ++++++|++|+.+...  .+... ..+. ...-..+..+..|.++ .+.++|++
T Consensus       167 tG~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~  238 (378)
T PRK07682        167 TGAVLNKSELEEIAVIVEKH------DLIVLSDEIYAELTYD--EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFI  238 (378)
T ss_pred             cCcCcCHHHHHHHHHHHHHc------CcEEEEehhhhhcccC--CCCCChhhcccccCCEEEEecCcccccChhhhhhhh
Confidence            99985   488999999999      9999999999976531  11000 0111 1122355566889986 45678999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +..+ +.. +.+.....+.     .    .   +...+.+.++...+  |..-++++  +..+..+++.+.|++.|+
T Consensus       239 ~~~~-~~i-~~l~~~~~~~-----~----~---~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  301 (378)
T PRK07682        239 AAPV-YFS-EAMLKIHQYS-----M----M---CAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGL  301 (378)
T ss_pred             hcCH-HHH-HHHHHHHHhh-----c----c---CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            8743 222 2221111110     0    0   11234444455555  22334444  677888899999988764

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.82  E-value=2.7e-18  Score=167.52  Aligned_cols=272  Identities=10%  Similarity=-0.013  Sum_probs=176.8

Q ss_pred             CCCCccccccccCCC-hHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           54 GNPRLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        54 ~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++..++|+.+.|..+ ++.+.+.+.+.+.. ....|....+..+|++++.+|+.+.+|.+.+.  +..+++|+|+++++.
T Consensus        34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~--~~~i~vt~G~~~al~  111 (394)
T PRK05942         34 GLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDP--DSEALPLLGSKEGLT  111 (394)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCC--CCeEEEccChHHHHH
Confidence            333445555445432 34455555555432 23445555678899999999999888865421  113778999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEee
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++.++.++             +++|++++|+|..+...+...|++++.+|++. +++.+|++++++++++++++|++++
T Consensus       112 ~~~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~  178 (394)
T PRK05942        112 HLALAYVNP-------------GDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNY  178 (394)
T ss_pred             HHHHHhCCC-------------CCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcC
Confidence            888776442             47899999999999888889999999999974 3478999999999988999999999


Q ss_pred             CCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCC-CCCCCe
Q 017569          211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAGV  285 (369)
Q Consensus       211 ~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l-~~p~g~  285 (369)
                      |+||||.+.+   +++|.++|+++      ++++++|++|+.+...-........+. .........+..|.+ ..+.++
T Consensus       179 P~NPtG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRi  252 (394)
T PRK05942        179 PSNPTTATAPREFFEEIVAFARKY------EIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRV  252 (394)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHc------CeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhhe
Confidence            9999999976   88899999999      999999999986543100000001111 112223344567965 566789


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      |+++.. ++.. +.+.....+..         .+.+.   +.+.++...+  ..+.+++.  +..++.+++.+.|++.|
T Consensus       253 G~i~~~-~~l~-~~l~~~~~~~~---------~~~~~---~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  317 (394)
T PRK05942        253 GFVVGN-RHII-QGLRTLKTNLD---------YGIFS---ALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGELG  317 (394)
T ss_pred             eeeecC-HHHH-HHHHHHHhhcc---------cCCCH---HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999863 2222 22211111100         11111   2222222222  23444444  66777788888888765

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.82  E-value=7.6e-19  Score=170.01  Aligned_cols=220  Identities=16%  Similarity=0.042  Sum_probs=160.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++.|...       .++++||++|+..++.++.++             +++|+++++.|..+..
T Consensus        60 npt~~~Le~~----iA~le~~~~-------~~~~~sG~~Ai~~~l~all~~-------------GD~Vvv~~~~Y~~t~~  115 (394)
T PRK09028         60 TPTHFAFQAA----IVELEGGAG-------TALYPSGAAAISNALLSFLKA-------------GDHLLMVDSCYEPTRD  115 (394)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEECCCcHHHHH
Confidence            3555677766    777777653       789999999999988877542             4789999988866554


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .    +..+|++++.++.+      |.+.++++++++|++|++++|+||+|.+.|+++|+++|+++      +++++||+
T Consensus       116 l~~~~l~~~Gi~v~~v~~~------~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~------g~~lvvD~  183 (394)
T PRK09028        116 LCDKILKGFGIETTYYDPM------IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEH------DIVVMLDN  183 (394)
T ss_pred             HHHHhhhhcceEEEEECCC------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEEC
Confidence            3    34568887776532      45789999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..  ..|   .   ..++|.+..|+|||++++.+.  |++ +.+++.. ..+.......          |.  ..
T Consensus       184 t~a~p~~--~~P---l---~~GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~-~~l~~~~~~~----------G~--~~  241 (394)
T PRK09028        184 TWASPIN--SRP---F---EMGVDISIQAATKYIVGHSDVMLGTA-TANEKHW-DQLREHSYLM----------GQ--CT  241 (394)
T ss_pred             Ccccccc--CCc---c---ccCceEEEEeCCeEecCCCCEEEEEE-ECCHHHH-HHHHHHHHhc----------CC--CC
Confidence            9986432  222   2   238999999999999888543  544 4443221 1111111111          11  23


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+...|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       242 ~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~y  285 (394)
T PRK09028        242 SPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH  285 (394)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            46788888877766555533999999999999999998877554

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.82  E-value=2.3e-18  Score=165.44  Aligned_cols=199  Identities=18%  Similarity=0.093  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      ++.+.+++.+... ....|....+..+|++++.+++.+..|.+.+.  ...+++|+|+++++..++.++.+.        
T Consensus        15 ~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~Iiit~Gs~~ai~~~~~~~~~~--------   83 (350)
T TIGR03537        15 PPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDP--DAQVLPSAGSKEAIFHFPLVFIDP--------   83 (350)
T ss_pred             CHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEcCChHHHHHHHHHHHcCC--------
Confidence            5667777776654 34445555678899999999999888865421  125899999999998888776542        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLL  224 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I  224 (369)
                      |  ..++.|+++.++|..+..+++..|++++.+|++ ++++.+|++++++++.+++++++++.|+||||.+.+   +++|
T Consensus        84 g--~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l  161 (350)
T TIGR03537        84 E--EDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKET  161 (350)
T ss_pred             C--CCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHH
Confidence            1  123589999999999999999999999999997 445789999999999989999999999999999877   8899


Q ss_pred             HHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CC-CCcEEEEcCccCC-CCCCCeEEEEE
Q 017569          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP-LVKSINVSGHKYG-LVYAGVGWVVW  290 (369)
Q Consensus       225 ~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~-~~Dsi~~~~hK~l-~~p~g~g~l~~  290 (369)
                      +++|+++      ++++++|++|+.+...  .+  ...+. .. .-..+..+..|.+ ......|+++.
T Consensus       162 ~~~a~~~------~~~ii~De~y~~~~~~--~~--~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~  220 (350)
T TIGR03537       162 IAMCREH------GIILCSDECYTEIYFG--EP--PHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG  220 (350)
T ss_pred             HHHHHHc------CcEEEEeccccccccC--CC--CCchhhcCcCCEEEEeecccccCCccccceeeec
Confidence            9999999      9999999999864331  11  11111 11 1113344688986 44567888864

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=2.7e-18  Score=168.51  Aligned_cols=231  Identities=15%  Similarity=0.061  Sum_probs=157.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |...++|++    ++++.|.+.       .++|++|++|+.+++.++..+             +++||++...|.+....
T Consensus        64 p~~~~le~~----lA~l~g~~~-------av~~sSGt~Al~~al~~ll~~-------------Gd~Vi~~~~~y~~t~~~  119 (433)
T PRK08134         64 PTVAVLEER----VAALEGGVG-------AIATASGQAALHLAIATLMGA-------------GSHIVASSALYGGSHNL  119 (433)
T ss_pred             hHHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCccHHHHHH
Confidence            455556555    899999875       699999999999988876331             46899999888765443


Q ss_pred             H----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +    ...|+++++++++      |+++|+++|+++|++|++.+++||+|.+.|+++|+++|+++      ++++++|++
T Consensus       120 ~~~~l~~~Gi~v~~vd~~------d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~------gi~livD~t  187 (433)
T PRK08134        120 LHYTLRRFGIETTFVKPG------DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEA------GVPLLVDST  187 (433)
T ss_pred             HHHHHhhCCeEEEEECCC------CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHc------CCEEEEECC
Confidence            3    4479999888864      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCc-ccc--cc-cccCccCC--C-CC-C----
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDL-PDE--LV-FHINYLGS--D-QP-T----  313 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~-~~~--~~-~~~~y~~~--~-~~-~----  313 (369)
                      ++.+..   .    ..+ ..++|.++.|+|||++++.. .|.+++...... ...  +. ....+.+.  . .. +    
T Consensus       188 ~a~~~~---~----~pl-~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  259 (433)
T PRK08134        188 FTTPYL---L----RPF-EHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVA  259 (433)
T ss_pred             Cccccc---C----Cch-hcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchh
Confidence            876443   1    111 24899999999999966543 445554322111 000  00 00111000  0 00 0    


Q ss_pred             -cc--c--cCCc---chhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 -FT--L--NFSK---GSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 -~~--l--~~tr---~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                       +.  .  .+++   .......+|..++.+..  +..+  +..++|..+++.|++++.+++-+|
T Consensus       260 ~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~t--l~~R~~~~~~nA~~la~~L~~~p~V~~V~y  321 (433)
T PRK08134        260 AFLLRARREGLRDFGACLSPMNAWQLLQGIET--LPLRMERHVANTRKVVAFLASHPAVARVAH  321 (433)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence             00  0  0000   11234556655555543  4444  999999999999999998876543

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.82  E-value=1.1e-18  Score=170.40  Aligned_cols=253  Identities=13%  Similarity=0.047  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      ..+.+...+++..+...|..+++..+||++    +++++|.+.       +++|+||++|+.+++.++.++         
T Consensus        32 ~ams~~~~~a~~~gd~~Y~~~~g~~~Leea----ia~~~g~~~-------vv~t~~Gt~Al~la~~al~~p---------   91 (431)
T cd00617          32 GAMSDYQWAAMMLGDEAYAGSKSFYDLEDA----VQDLFGFKH-------IIPTHQGRGAENILFSILLKP---------   91 (431)
T ss_pred             HHHHHHHHHHHHhCCCccCCCCCHHHHHHH----HHHHHCCCe-------EEEcCCHHHHHHHHHHHhCCC---------
Confidence            455666666665544557778899999988    677778875       899999999999998887542         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhhc----CcEEEEeeCCCCc-
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDEN----TICVAAILGSTLT-  215 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~----~~~v~~~~~~~~t-  215 (369)
                          +++| ++++.+.++...+.+.|+.++.+++++.         ++.+|+++|+++|+++    +++|+++.++|++ 
T Consensus        92 ----GD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~g  166 (431)
T cd00617          92 ----GRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAG  166 (431)
T ss_pred             ----CCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCC
Confidence                3555 6887788888888999999999999742         2459999999999875    7889999999998 


Q ss_pred             ccCC---CHHHHHHHHHHhhhccCCCceEEeeccccccccccc-------CCCccccc--c-CCCCcEEEEcCccCCCCC
Q 017569          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-------YPDLEWDF--R-LPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       216 G~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~-------~~~~~~~~--~-~~~~Dsi~~~~hK~l~~p  282 (369)
                      |.+-   ++++|.++|+++      ++++|.|+|......-|.       ......++  . ....|++++++||-+.+|
T Consensus       167 G~~~s~~~l~~i~eia~~~------gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~  240 (431)
T cd00617         167 GQPVSMANLREVRELAHKY------GIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN  240 (431)
T ss_pred             CccCCHHHHHHHHHHHHHc------CCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc
Confidence            7774   567889999999      999999999543211111       01000011  1 236899999999998887


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      .| |+++.+++++... +.... +......++   |.-++....++..+|.....  .+.+ +..+..++|.++|++.|+
T Consensus       241 ~G-G~i~~~d~~l~~~-~~~~~-~~~~~~~~~---gG~~~r~~~A~A~gL~e~~~--~~~l~~~~~~r~~l~~~L~~~G~  312 (431)
T cd00617         241 IG-GFLALRDDELYEE-ARQRV-VLYEGFVTY---GGMAGRDMEALAQGLREAVE--EDYLRHRVEQVRYLGDRLDEAGV  312 (431)
T ss_pred             cc-eEEEeCcHHHHHH-HHHhc-cccCCcccc---ccccHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHCCC
Confidence            74 6787776434322 21100 100000111   22233333333334433211  2334 566677999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02187 rooty/superroot1

Probab=99.82  E-value=3.6e-18  Score=169.61  Aligned_cols=273  Identities=12%  Similarity=0.050  Sum_probs=186.1

Q ss_pred             CCCccccccccC----C-ChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           55 NPRLNLASFVTT----W-MEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        55 ~p~~~l~~~~~~----~-~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .+.++|+.+.|.    + +++.+.+.+.+++..+. ..|....+..++++++.+++.+.+|.+.+.   ..+++|+|+++
T Consensus        66 ~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~---~~I~it~G~~~  142 (462)
T PLN02187         66 KTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTP---EDIFLTAGCNQ  142 (462)
T ss_pred             CCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCc---ccEEEeCCHHH
Confidence            344567766554    2 23567777777776543 345566788999999999998877765422   35899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEE
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      ++.+++.++.++             ++.|+++.|+|+.+...++..|++++.+++.+ +++.+|+++|++++++++++++
T Consensus       143 al~~~~~~l~~p-------------Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~  209 (462)
T PLN02187        143 GIEIVFESLARP-------------NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMV  209 (462)
T ss_pred             HHHHHHHHhcCC-------------CCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEE
Confidence            999998887542             47899999999999999999999999999853 4589999999999988999999


Q ss_pred             EeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CC-CCcEEEE-cCccC-CC
Q 017569          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP-LVKSINV-SGHKY-GL  280 (369)
Q Consensus       208 ~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~-~~Dsi~~-~~hK~-l~  280 (369)
                      +++|+||||.+-+   +++|+++|+++      ++++++|++|+.+.+.  .+.. ..+. .. ....+++ +.-|. +.
T Consensus       210 i~nP~NPTG~v~s~e~l~~i~~~a~~~------~i~iI~DE~Y~~l~f~--~~~~-~s~~~~~~~~~vi~l~SfSK~f~~  280 (462)
T PLN02187        210 VINPNNPCGNVYSHDHLKKVAETARKL------GIMVISDEVYDRTIFG--DNPF-VSMGKFASIVPVLTLAGISKGWVV  280 (462)
T ss_pred             EeCCCCCCCCccCHHHHHHHHHHHHHC------CCEEEEeccccccccC--CCCc-eeHHHhccCCcEEEEecchhhcCC
Confidence            9999999999855   88899999999      9999999999875531  1111 0111 11 1124444 46777 77


Q ss_pred             CCCCeEEEEEeCCCCcc---cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--H-hhHHHH--HhhHHHHHH
Q 017569          281 VYAGVGWVVWRTKDDLP---DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--F-EVIPSF--CCVDHKKLS  352 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~---~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~-~G~~~~--~~~~~a~~l  352 (369)
                      .++.+|+++..+++...   ..+..-..+.     +  +....   ..+.++++...+.  . +=+++.  ...+..+++
T Consensus       281 pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~-----~--~~~~~---s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l  350 (462)
T PLN02187        281 PGWKIGWIALNDPEGVFETTKVLQSIKQNL-----D--VTPDP---ATIIQAALPAILEKADKNFFAKKNKILKHNVDLV  350 (462)
T ss_pred             ccceeEEEEecCchhHHHHHHHHHHHHHhc-----c--ccCCC---CHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            78999999985432210   1111100000     0  00000   1334444444442  2 223433  667777889


Q ss_pred             HHHHHhcCCC
Q 017569          353 SFFVIHSSYF  362 (369)
Q Consensus       353 ~~~L~~~g~~  362 (369)
                      .+.|++.+.+
T Consensus       351 ~~~L~~~~~~  360 (462)
T PLN02187        351 CDRLKDIPCV  360 (462)
T ss_pred             HHHHhhCCCC
Confidence            9999887643

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.82  E-value=3.1e-18  Score=169.71  Aligned_cols=264  Identities=11%  Similarity=-0.005  Sum_probs=174.1

Q ss_pred             CChHHHHHHHHHHh-ccCCCCC------CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe-EEeCCchHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASI-NKNYVDM------DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG-VGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        67 ~~~~~v~~~~~~~~-~~n~~~~------~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~Ggt~a~~~al~~~~  138 (369)
                      ..++.+.+++.+.+ +.....+      .......++|+.+.+...++|+...+.   ... +-.++|+.||..++.++.
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~---~~~nv~~~SG~~AN~av~~aL~  121 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEK---WGVNVQPLSGSPANFAVYTALL  121 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcce---eEEecCcCchHHHHHHHHHHhC
Confidence            34577888888777 4332222      112256788888888899999988631   111 123788999988888875


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecC---CC---cchHHHHHhhhccee--E--EEeccCCccccCHHHHHHHHhh-cCcEEE
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGA---NV---QVCWEKFARYFEVEL--K--EVKLEEGYYVMNPVKAVELVDE-NTICVA  207 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~---~~---h~s~~~~~~~~G~~v--~--~v~~~~~~~~~d~~~L~~~i~~-~~~~v~  207 (369)
                      .+             +++|+..+   ..   |.+....++.-+...  .  ..+.+.+++.+|+++|++++.+ ++++|+
T Consensus       122 ~p-------------gD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv  188 (475)
T PLN03226        122 QP-------------HDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLII  188 (475)
T ss_pred             CC-------------CCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEE
Confidence            53             46888733   33   333333333222222  2  2344555689999999999874 677665


Q ss_pred             EeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       208 ~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      +.  .+.+|...|+++|.++|+++      ++++++|+|++.+..+.  +..+..  ...+|.++.++|||+.+|.| |+
T Consensus       189 ~~--~S~~s~~~D~a~i~~ia~~~------ga~LlvD~AH~~Gli~~--~~~~~p--~~~~Div~~t~hK~L~GP~G-g~  255 (475)
T PLN03226        189 AG--ASAYPRDWDYARMRKIADKV------GALLMCDMAHISGLVAA--QEAASP--FEYCDVVTTTTHKSLRGPRG-GM  255 (475)
T ss_pred             Ee--cCcCCCccCHHHHHHHHHHc------CCEEEEEchhhhCcccC--CCCCCC--CCCCeEEEecCcccccCCCc-eE
Confidence            42  34478889999999999999      99999999998877631  111111  33799999999999999998 77


Q ss_pred             EEEeCCCCcccccccc----cCcc--CCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          288 VVWRTKDDLPDELVFH----INYL--GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~----~~y~--~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +++++. .... +...    .+|.  -.....+..+++.+...++++.++++.+-..|++++  +..+++++|++.|.+.
T Consensus       256 I~~~~~-~~~~-~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~  333 (475)
T PLN03226        256 IFFRKG-PKPP-KGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK  333 (475)
T ss_pred             EEEchh-hccc-ccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence            777653 2211 0000    0110  000011223456666678888999999987888776  9999999999999997


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |+
T Consensus       334 G~  335 (475)
T PLN03226        334 GY  335 (475)
T ss_pred             CC
Confidence            75

>PLN02271 serine hydroxymethyltransferase

Probab=99.82  E-value=2.2e-18  Score=169.29  Aligned_cols=264  Identities=9%  Similarity=-0.034  Sum_probs=181.3

Q ss_pred             CChHHHHHHHHHHhcc-CC-CCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCCchHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NY-VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~-~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~~~~  138 (369)
                      ...+.+.+++...+.+ .. +.+     .......++|.-+.+...++||++++.   . .-+-..+|+.||+.++.++.
T Consensus       159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~---~gaNVQp~SGs~AN~aV~~ALl  235 (586)
T PLN02271        159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEK---WGVNVQPYSCTSANFAVYTGLL  235 (586)
T ss_pred             cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccc---cccceeeccHHHHHHHHHHHhc
Confidence            3457777777665543 11 111     112345689999999999999988621   1 12344489999999988885


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCC---CcchHH------HHHhhhcceeEEEe--ccCCccccCHHHHHH-HHhhcCcEE
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGAN---VQVCWE------KFARYFEVELKEVK--LEEGYYVMNPVKAVE-LVDENTICV  206 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~---~h~s~~------~~~~~~G~~v~~v~--~~~~~~~~d~~~L~~-~i~~~~~~v  206 (369)
                      ++             +++|+..+.   .|.+..      ..+...|..+..+|  ++++++.+|.++|++ +...+|++|
T Consensus       236 ~P-------------GD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLI  302 (586)
T PLN02271        236 LP-------------GDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKIL  302 (586)
T ss_pred             CC-------------CCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEE
Confidence            53             467887554   444432      23345576666666  565568999999998 667799998


Q ss_pred             EEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       207 ~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      ++....++  ..-|+++|+++|+++      ++++++|+|+..+.++  ....+..  ..++|.++.++|||+.+|.| |
T Consensus       303 I~g~Sayp--r~~D~~~i~eIAdev------GA~LmvD~AH~aGLIa--~g~~~sP--~~~aDvvt~TTHKtLrGPrG-G  369 (586)
T PLN02271        303 ICGGSSYP--REWDYARFRQIADKC------GAVLMCDMAHISGLVA--AKECVNP--FDYCDIVTSTTHKSLRGPRG-G  369 (586)
T ss_pred             EECchhcc--CcCCHHHHHHHHHHc------CCEEEEECcccccccc--cCcCCCC--CcCCcEEEeCCcccCCCCCc-e
Confidence            88666666  667999999999999      9999999999877762  1111111  34799999999999999999 7


Q ss_pred             EEEEeCCCCcccccccc----------cCccCCCC--CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHH
Q 017569          287 WVVWRTKDDLPDELVFH----------INYLGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLS  352 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~----------~~y~~~~~--~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l  352 (369)
                      +++++++..  ......          .++.....  .-+.++|......++++..+++......|.+.  +..+||+.|
T Consensus       370 ~I~~r~~~~--~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaL  447 (586)
T PLN02271        370 IIFYRKGPK--LRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQAL  447 (586)
T ss_pred             EEEeccccc--ccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            777765311  110000          00100000  11345566556668999999998877777777  999999999


Q ss_pred             HHHHHhcCC
Q 017569          353 SFFVIHSSY  361 (369)
Q Consensus       353 ~~~L~~~g~  361 (369)
                      ++.|.+.||
T Consensus       448 A~~L~~~G~  456 (586)
T PLN02271        448 ASALLRRKC  456 (586)
T ss_pred             HHHHHHCCC
Confidence            999999887

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.82  E-value=5.9e-19  Score=170.48  Aligned_cols=219  Identities=16%  Similarity=0.052  Sum_probs=162.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |....||++    ++++.|.+.       .++++||++|+..++.++..+             +++|+++++.|......
T Consensus        50 Pt~~~lE~~----lA~l~g~~~-------~~~~~sG~~Ai~~al~all~~-------------GD~Vl~~~~~y~~t~~~  105 (377)
T TIGR01324        50 LTHFALQDA----MCELEGGAG-------CYLYPSGLAAVTNSILAFVKA-------------GDHVLMVDSAYEPTRYF  105 (377)
T ss_pred             ccHHHHHHH----HHHHhCCCc-------EEEECcHHHHHHHHHHHhcCC-------------CCEEEEcCCCcHHHHHH
Confidence            556677777    888888764       789999999999998877442             47899999888765543


Q ss_pred             ----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 ----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                          ++..|++++.++..      +.++++++++++|++|++++|+|++|.+.|+++|+++|+++      ++++++|++
T Consensus       106 ~~~~~~~~gi~v~~~d~~------~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~------g~~livD~t  173 (377)
T TIGR01324       106 CDIVLKRMGVDITYYDPL------IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNP------GIVIMIDNT  173 (377)
T ss_pred             HHHHHHhcCcEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEECC
Confidence                34568887776532      22789999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..  ..|   .   ..++|.++.+++||++++.+  .|+++.++ +.. ..+. ...+..         |+  ...
T Consensus       174 ~a~g~~--~~p---l---~~gaDivv~S~tK~l~G~~d~~gG~v~~~~-~~~-~~l~-~~~~~~---------G~--~l~  231 (377)
T TIGR01324       174 WAAGLL--FKP---L---EHGVDISIQAGTKYLVGHSDIMIGTVVANA-RTW-DQLR-EHSYLM---------GQ--MVD  231 (377)
T ss_pred             Cccccc--cCc---c---ccCceEEEecCceeccCCCCceEEEEEeCH-HHH-HHHH-HHHHHh---------CC--CCC
Confidence            987554  111   1   23899999999999988765  46665543 222 1111 111111         11  123


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +...|..++.+..-+++-.++.++|..+++.|++++.+++.+|
T Consensus       232 p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y  274 (377)
T TIGR01324       232 ADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLH  274 (377)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEEC
Confidence            5677887777765555522999999999999999999987765

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.82  E-value=9.2e-18  Score=164.41  Aligned_cols=270  Identities=11%  Similarity=0.014  Sum_probs=182.7

Q ss_pred             CCCCccccccccCCC-hHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCCchHHH
Q 017569           54 GNPRLNLASFVTTWM-EPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        54 ~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~  130 (369)
                      ++..++|..+.+... ++.+.+.+.+.+... ...|. ..+..++++++.+|+.+.+|.+ .+.  ...+++|+|+++++
T Consensus        43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~--~~~I~it~Gs~~al  119 (410)
T PRK06290         43 DMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDP--VTEVIHSIGSKPAL  119 (410)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCC--cceEEEccCHHHHH
Confidence            444566766666543 456777776655432 22333 3688999999999999888865 321  12489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEe
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      ..++.++.+.             ++.|+++.|+|..+...++..|++++.+|+++ +++.+|++++++++.+++++|+++
T Consensus       120 ~~~~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~  186 (410)
T PRK06290        120 AMLPSCFINP-------------GDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLN  186 (410)
T ss_pred             HHHHHHhCCC-------------CCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEE
Confidence            8888877542             47899999999999999999999999999975 347889999999998889999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCC-CCCC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYG-LVYA  283 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l-~~p~  283 (369)
                      .|+||||.+.+   +++|.++|+++      ++||++|.+|+.+...  ..... ..+. ....+.+.-+..|.+ ..+.
T Consensus       187 nP~NPTG~v~s~e~l~~l~~la~~~------~~~iI~DEaY~~~~~~--~~~~s~~~~~~~~~~~I~i~SfSK~~g~~Gl  258 (410)
T PRK06290        187 YPNNPTGAVATKEFYEEVVDFAKEN------NIIVVQDAAYAALTFD--GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGW  258 (410)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHc------CeEEEEecchhhceeC--CCCcChhcCCCccccEEEEeechhhcCCchh
Confidence            99999999966   67888889999      9999999999975431  11001 0111 123446666788887 4667


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcC
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .+|+++.. ++.. ..+.....+...        ++    ..+.+.++...+.... +++.  +..+..+++.+.|++.|
T Consensus       259 RiG~ii~~-~~l~-~~l~~~~~~~~~--------~~----~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  324 (410)
T PRK06290        259 RLAFVVGN-ELIV-KAFATVKDNNDS--------GQ----FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVG  324 (410)
T ss_pred             heEeEEeC-HHHH-HHHHHHHhcccc--------CC----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            88998863 2222 222111011000        01    1233334444443223 2333  66777888999998876


Q ss_pred             C
Q 017569          361 Y  361 (369)
Q Consensus       361 ~  361 (369)
                      +
T Consensus       325 ~  325 (410)
T PRK06290        325 F  325 (410)
T ss_pred             C
Confidence            3

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.82  E-value=1.2e-18  Score=169.70  Aligned_cols=220  Identities=13%  Similarity=0.016  Sum_probs=155.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-  169 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-  169 (369)
                      |...+||++    +++++|.+.       ..++++|+.|+..++.+...+             +++|+++.+.|.++.. 
T Consensus        65 p~~~~Le~~----lA~l~G~~~-------~~~~~sG~~Ai~~~l~~~l~~-------------Gd~Vl~~~~~y~~~~~~  120 (398)
T PRK07504         65 PTVDMFEKR----MCALEGAED-------ARATASGMAAVTAAILCQVKA-------------GDHVVAARALFGSCRYV  120 (398)
T ss_pred             chHHHHHHH----HHHHhCCCe-------eeEecCHHHHHHHHHHHHhCC-------------CCEEEEcCCchhHHHHH
Confidence            455566655    889999986       456788899998777654331             4789999988876443 


Q ss_pred             ---HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          170 ---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       170 ---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                         .+...|++++.++      .+|+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       121 ~~~~~~~~G~~v~~vd------~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~------gi~lvvD~a  188 (398)
T PRK07504        121 VETLLPRYGIESTLVD------GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQA------GAKLVVDNV  188 (398)
T ss_pred             HHHHHhhcCeEEEEEC------CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHc------CCEEEEECC
Confidence               3445688888775      2589999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQI  325 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~  325 (369)
                      |+.+..  ..   +.   ..++|.++.|+|||++++. ..|.+++.+++.+...+.   .+..       ..|.  ....
T Consensus       189 ~a~~~~--~~---~~---~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~-------~~g~--~~s~  248 (398)
T PRK07504        189 FATPLF--QK---PL---ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFR-------HTGP--SLSP  248 (398)
T ss_pred             cccccc--CC---ch---hhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHH-------HhCC--CCCH
Confidence            975433  11   11   2278999999999997653 444444444433321111   0000       0011  1235


Q ss_pred             HHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCcccc
Q 017569          326 IAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       326 l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      ..+|..++.+..-..+..+..++|++++++|++.+.+++-+
T Consensus       249 ~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~  289 (398)
T PRK07504        249 FNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVI  289 (398)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEE
Confidence            67777777665533332277799999999999988876543

>PRK07777 aminotransferase; Validated

Probab=99.81  E-value=5.6e-18  Score=164.88  Aligned_cols=213  Identities=14%  Similarity=0.047  Sum_probs=160.5

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+.+.|... ++.+.+.+.+.+......|....+..++++++.+++.+.+|.+.+.  ....++|+|+++|+.+++
T Consensus        25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~  102 (387)
T PRK07777         25 GAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDP--DTEVLVTVGATEAIAAAV  102 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCcHHHHHHHH
Confidence            3456666655432 3456666777666555556666789999999999999988986422  124889999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC--ccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      .++..+             ++.|+++.++|..+..+++..|..++.++++++  ++.+|+++|++++.+++++|++++|+
T Consensus       103 ~~~~~~-------------gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~  169 (387)
T PRK07777        103 LGLVEP-------------GDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPH  169 (387)
T ss_pred             HHhcCC-------------CCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCC
Confidence            766431             468999999999999999999999999998653  47899999999998889999999999


Q ss_pred             CCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-cccc-cc-CCCCcEEEEcCccCCC-CCCCe
Q 017569          213 TLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWD-FR-LPLVKSINVSGHKYGL-VYAGV  285 (369)
Q Consensus       213 ~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~-~~-~~~~Dsi~~~~hK~l~-~p~g~  285 (369)
                      ||||.+.   ++++|.++|+++      ++++++|++|+.+...  ... .+.. +. ....+.+..+.+|.++ ...++
T Consensus       170 NPtG~~~~~~~~~~l~~~~~~~------~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi  241 (387)
T PRK07777        170 NPTGTVLTAAELAAIAELAVEH------DLLVITDEVYEHLVFD--GARHLPLATLPGMRERTVTISSAAKTFNVTGWKI  241 (387)
T ss_pred             CCCCccCCHHHHHHHHHHHHhc------CcEEEEeccchhcccC--CCCcccHhhCCCCcCcEEEEeechhhccCcCcee
Confidence            9999984   588999999999      9999999999865431  110 0111 11 1234677778999986 45668


Q ss_pred             EEEEEe
Q 017569          286 GWVVWR  291 (369)
Q Consensus       286 g~l~~~  291 (369)
                      |+++..
T Consensus       242 G~~~~~  247 (387)
T PRK07777        242 GWACGP  247 (387)
T ss_pred             EEEecC
Confidence            988764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.81  E-value=4.9e-18  Score=165.44  Aligned_cols=268  Identities=13%  Similarity=0.031  Sum_probs=181.1

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      +.++|+.+.+.. +++.+.+++.++++. ....|....+..++++++++++++.+|.+.+.  ...+++|+|+++++..+
T Consensus        28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~--~~~i~~t~G~~~~l~~~  105 (389)
T PRK05957         28 GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNN--EQAIVVTAGSNMAFMNA  105 (389)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEEeCChHHHHHHH
Confidence            345666666653 456788888877643 23445556788999999999999999975320  13488999999999888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +.++.++             ++.|++++|+|..+...++..|++++.+|.+.+ +.+|+++|++++++++++|++++|+|
T Consensus       106 ~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~klv~~~~p~N  171 (389)
T PRK05957        106 ILAITDP-------------GDEIILNTPYYFNHEMAITMAGCQPILVPTDDN-YQLQPEAIEQAITPKTRAIVTISPNN  171 (389)
T ss_pred             HHHhcCC-------------CCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCC-CCcCHHHHHHhcCcCceEEEEeCCCC
Confidence            8776432             478999999998888888889999999998754 89999999999998999999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccc-cCCCCcEEEEcCccCCC-CCCCeEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      |||.+.+   +++|+++|+++      |+++++|++|+.+...- .+... ..+ ....--....+.-|.++ ....+|+
T Consensus       172 PtG~~~~~~~~~~i~~~a~~~------~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  244 (389)
T PRK05957        172 PTGVVYPEALLRAVNQICAEH------GIYHISDEAYEYFTYDG-VKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGY  244 (389)
T ss_pred             CCCcCcCHHHHHHHHHHHHHc------CcEEEEeccchhccCCC-CCccChhhCCCccCcEEEEecchhhccCccceeEE
Confidence            9999976   88999999999      99999999998754310 01011 111 11111133344668873 4456999


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH--hhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF--EVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~--~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++.+ +.. +.+.....+..         .+-   ..+.+.++...+..  +-+++.  +..++.+++.+.|++.+
T Consensus       245 ~~~~~-~~~-~~~~~~~~~~~---------~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  307 (389)
T PRK05957        245 MVIPI-HLL-EAIKKIQDTIL---------ICP---PVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQ  307 (389)
T ss_pred             EecCH-HHH-HHHHHHHhhcc---------cCC---CcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98743 222 22211111000         011   12344454555522  223444  56677777888887764

>PRK07683 aminotransferase A; Validated

Probab=99.81  E-value=6e-18  Score=164.69  Aligned_cols=266  Identities=15%  Similarity=0.121  Sum_probs=183.5

Q ss_pred             ccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.|..+ ++.+.+++.+++..+...|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++|+.+++.+
T Consensus        31 i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~~I~~t~G~~~al~~~~~~  108 (387)
T PRK07683         31 ISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP--ESEIIVTIGASEAIDIAFRT  108 (387)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHHH
Confidence            45555555433 4667888888887665566566788999999999998877875321  12589999999999988877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +..+             ++.|+++.++|..+..+++.+|++++.++++++++.+|++++++.+.++++++++++|+||||
T Consensus       109 l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG  175 (387)
T PRK07683        109 ILEP-------------GTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTG  175 (387)
T ss_pred             hCCC-------------CCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence            6432             478999999999999999999999999999866688999999999988899999999999999


Q ss_pred             cCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccc-cCCCCcEEEEcCccCCC-CCCCeEEEEE
Q 017569          217 EFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       217 ~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~  290 (369)
                      .+.   ++++|+++|+++      ++++++|++|..+..  -.+... ..+ ....-..+..+..|.++ ....+|+++.
T Consensus       176 ~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~  247 (387)
T PRK07683        176 VTLSKEELQDIADVLKDK------NIFVLSDEIYSELVY--EQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFA  247 (387)
T ss_pred             cCCCHHHHHHHHHHHHHc------CeEEEEeccccccee--CCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEc
Confidence            984   488999999999      999999999987543  111111 111 01112344556889886 5677899986


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .. +.. +.+.....|...        +.    ..+.+.++...+  |..-+++.  +..++.+++.+.|.+.|
T Consensus       248 ~~-~l~-~~~~~~~~~~~~--------~~----~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  307 (387)
T PRK07683        248 PS-YLA-KHILKVHQYNVT--------CA----SSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMG  307 (387)
T ss_pred             CH-HHH-HHHHHHHHhccC--------CC----ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43 222 222111111110        11    112233333333  33323333  56777888888888765

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.81  E-value=3.2e-18  Score=166.23  Aligned_cols=187  Identities=14%  Similarity=0.091  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      +...+++.++++.+..  ..++...++|++    +++++|.+.       .++++||++|+.+++.++.-.         
T Consensus        10 ~~~~~~v~~~~~~~~~--~~g~~~~~le~~----la~~~g~~~-------~v~~~sgt~al~~~l~al~~~---------   67 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL--TQGPTVPAFEEA----LAEYVGAKY-------AVAFNSATSALHIACLALGVG---------   67 (380)
T ss_pred             HHHHHHHHHHHhcCCc--cCChhHHHHHHH----HHHHHCCCe-------EEEEcCHHHHHHHHHHHcCCC---------
Confidence            3446666777765543  234556666665    888888864       577788999999888876210         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcccCCCHHHHH
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFEDVKLLH  225 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~~l~~I~  225 (369)
                         .+++|+++.++|.++..++...|+++++++++++++.+|+++|+++++    ++|++|++   ++++|...|+++|.
T Consensus        68 ---~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~~~~i~  141 (380)
T TIGR03588        68 ---PGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVDMQAIA  141 (380)
T ss_pred             ---CCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCCHHHHH
Confidence               147899999999999999999999999999987668999999999998    67888774   45689999999999


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeCCCC
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~~~~  295 (369)
                      ++|+++      ++++++|++++.+..  .... +... ....|..++|+|  ||+.++.| |++++.+++.
T Consensus       142 ~l~~~~------~~~lI~D~a~a~g~~--~~~~-~~g~-~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~  202 (380)
T TIGR03588       142 ALAKKH------GLKIIEDASHALGAE--YGGK-PVGN-CRYADATVFSFHPVKIITTAEG-GAVTTNDEEL  202 (380)
T ss_pred             HHHHHc------CCEEEEECCCcccCc--cCCE-eCCC-ccccceEEEecCCCCcccccCc-eEEEECCHHH
Confidence            999999      999999999986543  1110 1100 113499999988  99977654 6666665433

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.81  E-value=3.4e-19  Score=171.42  Aligned_cols=260  Identities=15%  Similarity=0.020  Sum_probs=174.8

Q ss_pred             cCCChHHHHHHHHHHhcc----CCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCC-chHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINK----NYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG-SSEAIMLAGLA  136 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~----n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~G-gt~a~~~al~~  136 (369)
                      |...++.|.+++...+..    +...+..+   +...++.+++++.+++++|++.+    ...++|+| ||+|+..++..
T Consensus         7 p~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~----~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611           7 PAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN----YKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHHh
Confidence            444567888888887732    22222223   34557778999999999998532    35888887 99999988888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccC-HHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMN-PVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d-~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +..+        +  ..++.|++....|.+ .+.++..|++++.++++++....+ ++..+..+++++++|.+++.+|.|
T Consensus        83 l~~~--------~--~~~~~i~~g~~~~~~-~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~t  151 (355)
T cd00611          83 LLGD--------K--GTADYVVTGAWSAKA-AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIH  151 (355)
T ss_pred             cCCC--------C--CeEEEEECCHHHHHH-HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccc
Confidence            7321        0  112355554433333 446677899999999864311214 233334467789999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |.+.  .   ++++.+      +++++||++++.+..|       ++++  ..|....++||++ +|+|.|+++++++..
T Consensus       152 G~~~--~---~i~~~~------g~~~~VDa~qs~g~~~-------idv~--~~~~~~ss~~K~l-GP~G~g~l~~~~~~~  210 (355)
T cd00611         152 GVEF--D---EVPDTG------GVPLVADMSSNILSRP-------IDVS--KFGVIYAGAQKNL-GPAGVTVVIVRKDLL  210 (355)
T ss_pred             cEEc--c---eecccC------CCeEEEEccccccCCC-------CCHH--HhCEEEeeccccc-CCCceEEEEECHHHH
Confidence            9972  2   455568      9999999999887663       4443  2333445699986 699999999986422


Q ss_pred             cccccccccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhc-CC
Q 017569          296 LPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHS-SY  361 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~-g~  361 (369)
                      . ..-...+.+....  .......+|.+...++++.++++.+-.+ |++.+  |+.++++++++.|+++ |+
T Consensus       211 ~-~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl  281 (355)
T cd00611         211 G-KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGF  281 (355)
T ss_pred             h-hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            1 1000011111100  0111124788888899999999999888 79988  9999999999999999 74

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.81  E-value=1.4e-17  Score=161.74  Aligned_cols=267  Identities=13%  Similarity=-0.007  Sum_probs=179.2

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ..++|+.+.+.. +++.+.+.+.+++.. ....|....+..++++++++++++.+|.+.+.  ....++|+|+++++..+
T Consensus        30 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~--~~~vi~t~G~~~~l~~~  107 (383)
T TIGR03540        30 DVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDP--ETEVLSLIGSKEGIAHI  107 (383)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCeEEECCCcHHHHHHH
Confidence            335566655553 346678888776643 23445555578899999999999888876421  12367889999999888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      +.++.++             ++.|+++.++|..+...++.+|++++.+|+++ +++.+|++++++++.+++++|++++|+
T Consensus       108 ~~~~~~~-------------gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~  174 (383)
T TIGR03540       108 PLAFVNP-------------GDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPN  174 (383)
T ss_pred             HHHhCCC-------------CCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCC
Confidence            8876442             47899999999999999999999999999974 357889999999998899999999999


Q ss_pred             CCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C---CCCcEEEEcCccCCC-CCCC
Q 017569          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---PLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       213 ~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      ||||.+.+   +++|+++|+++      ++++++|.+|+.+...  ... ...+. .   ........+.-|.++ ....
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~l~~~--~~~-~~~~~~~~~~~~~~i~~~SfSK~~g~~GlR  245 (383)
T TIGR03540       175 NPTGAVAPLKFFKELVEFAKEY------NIIVCHDNAYSEITFD--GYK-APSFLEVDGAKDVGIEFHSLSKTYNMTGWR  245 (383)
T ss_pred             CCcCccCCHHHHHHHHHHHHHc------CEEEEEecchhhhccC--CCC-CcCcccCCCcccCEEEEEecccccCCccce
Confidence            99999966   78899999999      9999999999865431  101 11111 1   112234456779873 4566


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +|+++.. ++.. ..+.....+...        +..    .+.+.++...+  +.+-++++  +..++.+++.+.|++.|
T Consensus       246 iG~~i~~-~~l~-~~~~~~~~~~~~--------~~~----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  311 (383)
T TIGR03540       246 IGMAVGN-ADLI-AGLGKVKTNVDS--------GVF----QAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIG  311 (383)
T ss_pred             eeEEeCC-HHHH-HHHHHHHHhccc--------CCC----hHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8998753 3222 222110000000        111    12223333333  22334444  66788888999998865

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=1.4e-18  Score=168.54  Aligned_cols=220  Identities=15%  Similarity=0.007  Sum_probs=158.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |....||+.    ++++.|.+.       .++++||++|+.+++.++..+             +++|+++.+.|......
T Consensus        52 pt~~~L~~~----lA~l~g~~~-------~i~~~sg~~Ai~~~l~~l~~~-------------GD~Vl~~~~~y~~~~~~  107 (386)
T PRK08045         52 PTRDVVQRA----LAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYRL  107 (386)
T ss_pred             ccHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHHcCC-------------CCEEEEcCCCcHHHHHH
Confidence            445555555    888888642       899999999999888876542             47899999998753332


Q ss_pred             H-h---hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 A-R---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ~-~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      + .   ..|+++..++      ..|+++++++++++|++|++++|+||||.+.|+++|.++|+++      ++++++|++
T Consensus       108 ~~~~~~~~gi~v~~vd------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~------g~~vivDea  175 (386)
T PRK08045        108 FDSLAKRGCYRVLFVD------QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREA------GAVSVVDNT  175 (386)
T ss_pred             HHHHHhhCCeEEEEeC------CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEECC
Confidence            2 2   2344555543      2588999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |..+..  ..   +.   ..++|.++.+++||++++.+  .|+++.++++.. +.+.....+.+.            ...
T Consensus       176 y~~~~~--~~---pl---~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~-~~l~~~~~~~g~------------~~~  234 (386)
T PRK08045        176 FLSPAL--QN---PL---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNIGV------------TGG  234 (386)
T ss_pred             CCcccc--CC---ch---hhCCCEEEeecceeccCCCCceeEEEEeCcHHHH-HHHHHHHHhcCC------------CCC
Confidence            976432  11   11   23789999999999988876  577776554322 221111111111            124


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ++..|..++.+..-..+..++.++|..++++|++.+.+++-+|
T Consensus       235 p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y  277 (386)
T PRK08045        235 AFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYH  277 (386)
T ss_pred             HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence            6778888888865333322999999999999999998876544

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.81  E-value=1.7e-17  Score=161.35  Aligned_cols=269  Identities=14%  Similarity=-0.003  Sum_probs=180.0

Q ss_pred             CCCccccccccCC-ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           55 NPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        55 ~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      .+.++|+.+.+.. +++.+.+.+.+++... ...|....+..++++++.+|+.+.+|.+.+.  ....++|+|+++++..
T Consensus        31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~ii~t~G~~~~i~~  108 (385)
T PRK09276         31 VDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDP--ETEVISLIGSKEGIAH  108 (385)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEccCcHHHHHH
Confidence            3445566655543 3567888888777542 3344444578899999999999888875422  1237788999999988


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++.++             ++.|++++++|+.+...++..|++++.+|++. +++.+|++++++++.+++++|++++|
T Consensus       109 ~~~~~~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p  175 (385)
T PRK09276        109 IPLAFVNP-------------GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYP  175 (385)
T ss_pred             HHHHhCCC-------------CCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCC
Confidence            88876542             47899999999999999999999999999864 35789999999998888999999999


Q ss_pred             CCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc--ccc-CCCCcEEEEcCccCCC-CCCC
Q 017569          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW--DFR-LPLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       212 ~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      +||||.+.+   +++|+++|+++      ++++++|.+|+.+...  ......  .+. .........+.-|.++ .+..
T Consensus       176 ~NPtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlR  247 (385)
T PRK09276        176 NNPTGAVADLEFFEEVVDFAKKY------DIIVCHDAAYSEIAYD--GYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWR  247 (385)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHC------CcEEEEecchhheecC--CCCCCChhccCCCcCCEEEEecchhhcCCcchh
Confidence            999999966   68889999999      9999999999875431  100000  111 1122344456779873 4566


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--HhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +|+++.. ++.. ..+.....+...        +.    ..+.+.++...+.  ..-++++  +..++.+++.+.|++.|
T Consensus       248 iG~~i~~-~~l~-~~~~~~~~~~~~--------~~----~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  313 (385)
T PRK09276        248 IGFAVGN-ADLI-AGLGKVKSNVDS--------GV----FQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKLG  313 (385)
T ss_pred             heeeeCC-HHHH-HHHHHHHhhccC--------CC----CHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8999753 2222 222111011000        01    1223333344442  2233444  66777888989998865

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.81  E-value=1e-17  Score=163.44  Aligned_cols=220  Identities=15%  Similarity=0.019  Sum_probs=159.4

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      +.+.++|+.+.+.. +++.+.+++.+.+. ....|....+..++++++.+|+.+.+|.+..-+.....++|+|+++++.+
T Consensus        27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~  105 (393)
T TIGR03538        27 SKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA  105 (393)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH
Confidence            34556666666653 45678888887764 34445555678999999999999988765210111247889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++.++        |   +...|+++.|+|..+...++..|++++.+|+++ +++.+|+++|++++.+++++|++++|
T Consensus       106 ~~~~l~~~--------g---d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p  174 (393)
T TIGR03538       106 FAQAVINP--------G---QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSP  174 (393)
T ss_pred             HHHHHcCC--------C---CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCC
Confidence            88887542        1   123599999999999999999999999999964 34789999999999888999999999


Q ss_pred             CCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc--cccCCCC-----cEEEEcCcc-CCC
Q 017569          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW--DFRLPLV-----KSINVSGHK-YGL  280 (369)
Q Consensus       212 ~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~~-----Dsi~~~~hK-~l~  280 (369)
                      +||||.+-+   +++|+++|+++      ++++++|.+|..+...-..+....  .....+.     -.++.+.-| |+.
T Consensus       175 ~NPtG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~  248 (393)
T TIGR03538       175 GNPTGAVLSLDTLKKLIELADQY------GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL  248 (393)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHC------CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence            999999855   88899999999      999999999986543100000000  0000010     134556889 677


Q ss_pred             CCCCeEEEEEe
Q 017569          281 VYAGVGWVVWR  291 (369)
Q Consensus       281 ~p~g~g~l~~~  291 (369)
                      ...++|+++..
T Consensus       249 ~GlRvG~~i~~  259 (393)
T TIGR03538       249 PGLRSGFVAGD  259 (393)
T ss_pred             cccceEEEecC
Confidence            88999998763

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.81  E-value=3.4e-18  Score=163.66  Aligned_cols=248  Identities=15%  Similarity=-0.007  Sum_probs=168.2

Q ss_pred             hHHHHHHHHHHhccCCCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      +|++.+++.+++++...++.   ...+.....+++++.+++++|.+.       .+++++|++++..++.++.++     
T Consensus        17 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-------~iv~~sg~~a~~~~~~~~~~~-----   84 (349)
T cd06454          17 HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEA-------ALVFSSGYAANDGVLSTLAGK-----   84 (349)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCC-------EEEeccHHHHHHHHHHHhcCC-----
Confidence            47888988888864222211   122456666778888999999863       577778889998777766432     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-----cCcEEEEeeCCCCcccCCC
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~~~  220 (369)
                              +++|+++.+.|+++...++..|++++.++.      +|++++++++++     ++++|++++++|++|.+.|
T Consensus        85 --------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~  150 (349)
T cd06454          85 --------GDLIISDSLNHASIIDGIRLSGAKKRIFKH------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP  150 (349)
T ss_pred             --------CCEEEEehhhhHHHHHHHHHcCCceEEecC------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence                    468999999999999888999998877752      467788888874     4678888899999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      +++|+++|+++      ++++++|++|+.+..+... .....+....+.|.++.++||+++. .| |+++.+ ++.. ..
T Consensus       151 ~~~i~~~~~~~------~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~~-~~~~-~~  220 (349)
T cd06454         151 LPELVDLAKKY------GAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAGS-KELI-DY  220 (349)
T ss_pred             HHHHHHHHHHc------CCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-CEEECC-HHHH-HH
Confidence            99999999999      9999999999754432110 0001122234789999999999865 44 666654 3222 11


Q ss_pred             cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       300 ~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.....       .+...++.+....+++..+++.+..  +..+  +..++++++.+.|.+.|+
T Consensus       221 ~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~  275 (349)
T cd06454         221 LRSYAR-------GFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGF  275 (349)
T ss_pred             HHHhch-------hhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCC
Confidence            111100       0111123333345566667766633  2233  888899999999988753

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PLN02368 alanine transaminase

Probab=99.81  E-value=7e-18  Score=164.62  Aligned_cols=201  Identities=11%  Similarity=0.001  Sum_probs=148.2

Q ss_pred             ChHHHHHHHHHHh-c-cCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH-HHHHHH
Q 017569           68 MEPECDKLVMASI-N-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~-~-~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~  144 (369)
                      +++.+.+++.... . .....|....+..+|++++.+|+.+.+|.+.+.   ..+++|+|+++++.+++.++. ++    
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~Ga~~al~~~~~~l~~~p----  154 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDP---ELIFLTDGASKGVMQILNAVIRGE----  154 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcccHHHHHHHHHHHHcCCC----
Confidence            3444555554422 1 224456666688999999999999888865422   358999999999998888775 32    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCccc
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGE  217 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~  217 (369)
                               ++.|++++|+|+.+...++..|+.++.+|+++ ++|.+|+++|++++++      +++++++++|+||||.
T Consensus       155 ---------Gd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~  225 (407)
T PLN02368        155 ---------KDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQ  225 (407)
T ss_pred             ---------CCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCc
Confidence                     47899999999999999999999999999875 4589999999999975      6889999999999999


Q ss_pred             CC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-----ccc--C-CCCcEEEE-cCccCC--CCCC
Q 017569          218 FE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-----DFR--L-PLVKSINV-SGHKYG--LVYA  283 (369)
Q Consensus       218 ~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-----~~~--~-~~~Dsi~~-~~hK~l--~~p~  283 (369)
                      +.   .+++|+++|+++      ++|+++|++|+.+...--.+....     ++.  . .....+++ +..|.+  +.++
T Consensus       226 v~s~e~l~~l~~~a~~~------~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl  299 (407)
T PLN02368        226 CLSEANLREILKFCYQE------RLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ  299 (407)
T ss_pred             cCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCcc
Confidence            84   477888899999      999999999987653100010010     000  0 01134444 478875  4789


Q ss_pred             CeEEEEE
Q 017569          284 GVGWVVW  290 (369)
Q Consensus       284 g~g~l~~  290 (369)
                      .+|++++
T Consensus       300 RiGy~i~  306 (407)
T PLN02368        300 RGGYFEM  306 (407)
T ss_pred             ceEEEEE
Confidence            9999986

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=1.3e-18  Score=169.31  Aligned_cols=219  Identities=14%  Similarity=0.045  Sum_probs=161.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-  169 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-  169 (369)
                      |...+||+    .++++.|.+.       +++++||++|+.+++.++..+             +++|+++.++|..+.. 
T Consensus        65 pt~~~Le~----~lA~l~g~~~-------~l~~~sgt~Ai~~~l~al~~~-------------GD~Vl~~~~~y~~~~~~  120 (394)
T PRK07050         65 PTSLALAQ----RLAEIEGGRH-------ALLQPSGLAAISLVYFGLVKA-------------GDDVLIPDNAYGPNRDH  120 (394)
T ss_pred             HHHHHHHH----HHHHHhCCCe-------EEEeccHHHHHHHHHHHHhCC-------------CCEEEEecCCcccHHHH
Confidence            34455555    4889999764       899999999999999887542             5799999999987553 


Q ss_pred             ---HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          170 ---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       170 ---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                         .+..+|+++++++..      +.++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       121 ~~~~~~~~Gi~v~~vd~~------~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~------gi~livD~a  188 (394)
T PRK07050        121 GEWLARDFGITVRFYDPL------IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARAR------GVVTAIDNT  188 (394)
T ss_pred             HHHHHHhcCeEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHc------CCEEEEECC
Confidence               456779888887643      34788999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..  ..|   .   ..++|.++.|..|++.+..+  .|++++++++.. +.+.....+.+.            +..
T Consensus       189 ~a~~~~--~~~---l---~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~-~~~~~~~~~~G~------------~~~  247 (394)
T PRK07050        189 YSAGLA--FKP---F---EHGVDISVQALTKYQSGGSDVLMGATITADAELH-AKLKLARMRLGI------------GVS  247 (394)
T ss_pred             cccccc--cCH---H---HcCCeEEEEECCceecCCCCeeEEEEEECCHHHH-HHHHHHHHhcCC------------CCC
Confidence            986543  222   1   23789999999999977665  577777665432 221111111111            223


Q ss_pred             HHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +...|.+++.+..-.. .+ +..++|.++++.|++++.+++.++
T Consensus       248 ~~~a~l~lr~l~tl~~-Rl~~~~~~a~~la~~L~~~p~v~~v~~  290 (394)
T PRK07050        248 ADDCSLVLRGLPSLQV-RLAAHDRSALEVAEWLKARPEIATVLH  290 (394)
T ss_pred             HHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            5666777765543222 33 889999999999999988776654

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.80  E-value=2.5e-18  Score=167.64  Aligned_cols=214  Identities=15%  Similarity=0.027  Sum_probs=154.0

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYF  174 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~  174 (369)
                      ++.+.++++.|.+.       .+++++|++|+.+++.++..+             ++.|+++.+.|..    +...+...
T Consensus        64 ~Le~~lA~l~g~~~-------~v~~~sG~~Ai~~~l~all~p-------------GD~Vvv~~p~Y~~t~~~~~~~~~~~  123 (405)
T PRK08776         64 LLGEALAELEGGAG-------GVITATGMGAINLVLNALLQP-------------GDTLVVPHDAYGGSWRLFNALAKKG  123 (405)
T ss_pred             HHHHHHHHHhCCCc-------eEEEcCHHHHHHHHHHHHhCC-------------CCEEEEccCCchHHHHHHHHHHHhc
Confidence            34455888888754       578888899998888777442             4689999988876    34445555


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |+.++.++.      .|+++|+++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++|..+..  
T Consensus       124 g~~v~~v~~------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~------gi~vIvD~a~a~~~~--  189 (405)
T PRK08776        124 HFALITADL------TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV------GALTVVDNTFLSPAL--  189 (405)
T ss_pred             CcEEEEECC------CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            777766653      378999999988999999999999999999999999999999      999999999975332  


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHH
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l  332 (369)
                      ..   +..   .++|.+..|++|+++++.+  .|+++.++++.. +.+.......          |.  ...++..|..+
T Consensus       190 ~~---pl~---~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~-~~l~~~~~~~----------g~--~~s~~~a~l~~  250 (405)
T PRK08776        190 QK---PLE---FGADLVLHSTTKYINGHSDVVGGAVVARDAELH-QQLVWWANAL----------GL--TGSPFDAFLTL  250 (405)
T ss_pred             CC---ccc---ccCCEEEecCceeecCCCCceEEEEEeCCHHHH-HHHHHHHHhc----------CC--CCCHHHHHHHH
Confidence            11   122   3789999999999988765  577777654332 2111100011          11  11356677666


Q ss_pred             HHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          333 IRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       333 ~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +.+.  -+..+  +..+++..+++.|++.+.+++-+|
T Consensus       251 ~gl~--tl~~r~~~~~~na~~la~~L~~~p~v~~V~y  285 (405)
T PRK08776        251 RGLR--TLDARLRVHQENADAIAALLDGHAAVNQVYY  285 (405)
T ss_pred             hhhC--cHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            5443  34444  899999999999999998876544

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.80  E-value=6.2e-19  Score=169.49  Aligned_cols=225  Identities=12%  Similarity=0.005  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcc
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~  176 (369)
                      -++..+..|++||++.      .-.+++|+|.+|..++.++..+             +++|+++.+.|-|+..++.+.|+
T Consensus        68 I~eAe~~aA~~fGAd~------t~flvnGsT~g~~a~i~a~~~~-------------gd~VLv~RN~HkSv~~alil~ga  128 (417)
T PF01276_consen   68 IKEAEELAARAFGADK------TFFLVNGSTSGNQAMIMALCRP-------------GDKVLVDRNCHKSVYNALILSGA  128 (417)
T ss_dssp             HHHHHHHHHHHHTESE------EEEESSHHHHHHHHHHHHHTTT-------------TCEEEEETT--HHHHHHHHHHTE
T ss_pred             HHHHHHHHHHhcCCCe------EEEEecCchHHHHHHHHHhcCC-------------CCEEEEcCCcHHHHHHHHHHcCC
Confidence            3456677999999996      3577889999999998888663             57999999999999999999999


Q ss_pred             eeEEEeccCC----ccccCH-----HHHHHHHhhcC--c---EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEE
Q 017569          177 ELKEVKLEEG----YYVMNP-----VKAVELVDENT--I---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (369)
Q Consensus       177 ~v~~v~~~~~----~~~~d~-----~~L~~~i~~~~--~---~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~  242 (369)
                      .+++++...+    -+.+++     +.|+++|++.+  +   +|++++||.. |.+-|+++|+++|+++      ++.|+
T Consensus       129 ~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~-Gv~~di~~I~~~~h~~------~~~ll  201 (417)
T PF01276_consen  129 IPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYY-GVCYDIKEIAEICHKH------GIPLL  201 (417)
T ss_dssp             EEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TT-SEEE-HHHHHHHHCCT------ECEEE
T ss_pred             eEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCC-eEEECHHHHHHHhccc------CCEEE
Confidence            9999987421    135566     99999998743  3   4888988655 9999999999999999      99999


Q ss_pred             eecccccccccccCCCccccccCCCCc-------EEEEcCccCCCCCCCeEEEEEeCCC-CcccccccccCccCCCCCCc
Q 017569          243 VDAASGGFIAPFLYPDLEWDFRLPLVK-------SINVSGHKYGLVYAGVGWVVWRTKD-DLPDELVFHINYLGSDQPTF  314 (369)
Q Consensus       243 vD~a~~~~~~~~~~~~~~~~~~~~~~D-------si~~~~hK~l~~p~g~g~l~~~~~~-~~~~~~~~~~~y~~~~~~~~  314 (369)
                      ||+|+|+...  +.+-+. ..-..++|       .++.|.||.+.+-..++++.+++.. .-...+.........     
T Consensus       202 vDEAhGah~~--F~~lp~-~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~T-----  273 (417)
T PF01276_consen  202 VDEAHGAHFG--FHPLPR-SALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQT-----  273 (417)
T ss_dssp             EE-TT-TTGG--CSGGGT-TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS------
T ss_pred             EEcccccccc--CCCCcc-chhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcC-----
Confidence            9999998654  333222 22245889       9999999999999999999998875 222222222222222     


Q ss_pred             cccCCcchhHHHHHHHHHHHh-cHhhHHHH-HhhHHHHHHHHHHHh
Q 017569          315 TLNFSKGSSQIIAQYYQFIRL-GFEVIPSF-CCVDHKKLSSFFVIH  358 (369)
Q Consensus       315 ~l~~tr~~~~~l~~~~~l~~l-g~~G~~~~-~~~~~a~~l~~~L~~  358 (369)
                         -|++....+++-.+.+.+ +.+|-+.+ +.+++++++|++|++
T Consensus       274 ---TSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~  316 (417)
T PF01276_consen  274 ---TSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINR  316 (417)
T ss_dssp             ---SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence               255566678888898999 78888888 999999999999943

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.80  E-value=1.9e-18  Score=168.02  Aligned_cols=213  Identities=16%  Similarity=0.053  Sum_probs=153.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYF  174 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~  174 (369)
                      ++++.+++++|.+.       .++++||++|+..++.++..+             +++|+++.+.|.+..    ..+...
T Consensus        65 ~le~~la~l~g~~~-------~v~~ssG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~t~~~~~~~~~~~  124 (390)
T PRK08133         65 MFQERLAALEGAEA-------CVATASGMAAILAVVMALLQA-------------GDHVVSSRSLFGSTVSLFEKIFARF  124 (390)
T ss_pred             HHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEccCcchhHHHHHHHHHHHc
Confidence            34455899999874       789999999999988876432             468999988876533    455678


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |++++.++++      |+++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++++.+..  
T Consensus       125 G~~v~~vd~~------d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~------gi~livD~t~~~~~~--  190 (390)
T PRK08133        125 GIETTFVDLT------DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAA------GALLVVDNCFCTPAL--  190 (390)
T ss_pred             CcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            9999888764      68899999999999999999999999999999999999999      999999999865432  


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCCC-e-EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHH
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG-V-GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~-g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l  332 (369)
                      ..|   .   ..++|.++.|++|+++++.. . |+++.+ ++.+ ..+.   .+...       .|.  ......+|..+
T Consensus       191 ~~p---l---~~g~Divv~S~sK~~~g~g~~~GG~vv~~-~~~~-~~~~---~~~~~-------~g~--~~~~~~a~~~l  250 (390)
T PRK08133        191 QQP---L---KLGADVVIHSATKYLDGQGRVLGGAVVGS-KELM-EEVF---GFLRT-------AGP--TLSPFNAWVFL  250 (390)
T ss_pred             CCc---h---hhCCcEEEeecceeecCCcceEeEEEEcC-HHHH-HHHH---HHHHH-------hCC--CCCHHHHHHHH
Confidence            111   1   22689999999999976543 3 555543 3222 1111   01000       011  12345567666


Q ss_pred             HHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          333 IRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       333 ~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +.+  +.+..+  +..+++++++++|++.+.+++.+|
T Consensus       251 ~gl--~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~y  285 (390)
T PRK08133        251 KGL--ETLSLRMEAHSANALALAEWLEAHPGVERVFY  285 (390)
T ss_pred             ccc--chHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            544  345444  778999999999999988877665

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.80  E-value=1.8e-18  Score=167.83  Aligned_cols=220  Identities=15%  Similarity=-0.008  Sum_probs=158.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...++|+.    +++++|.+.       .++++||+.|+..++.++..+             ++.|+++.+.|.++..
T Consensus        52 np~~~~lE~~----lA~l~g~~~-------~l~~~sG~~Ai~~~l~~ll~~-------------GD~Vlv~~~~y~~~~~  107 (385)
T PRK08574         52 NPTLRPLEEA----LAKLEGGVD-------ALAFNSGMAAISTLFFSLLKA-------------GDRVVLPMEAYGTTLR  107 (385)
T ss_pred             CccHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHH
Confidence            3566677766    888999764       688899999999888876442             4789999999988766


Q ss_pred             HHh---hhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 FAR---YFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .++   ..|++++.++       +|+++|++++++ ++++|++.+++||+|.+.|+++|+++|+++      ++++++|+
T Consensus       108 ~~~~~~~~g~~v~~~~-------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~------gi~livD~  174 (385)
T PRK08574        108 LLKSLEKFGVKVVLAY-------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKEL------GAILVVDN  174 (385)
T ss_pred             HHHHhhccCcEEEEEC-------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEEC
Confidence            653   4476666543       357899999998 899999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +++.+..  ..+   .   ..++|.++.|++||+++|.+  .|++++.+++.. ..+.....+.          |..  .
T Consensus       175 t~a~~~~--~~~---l---~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~-~~~~~~~~~~----------g~~--~  233 (385)
T PRK08574        175 TFATPLL--YRP---L---RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFL-EELWEWRRRL----------GTI--M  233 (385)
T ss_pred             CCCcccc--CCh---h---hhCCcEEEeeCceeecCCCCceeEEEEECcHHHH-HHHHHHHHhc----------CCC--C
Confidence            9875432  111   1   23789999999999988764  366666654332 1111000111          111  1


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ....+|..++.+..-..+-.+..++|++++++|++.+.+++-+|
T Consensus       234 ~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~y  277 (385)
T PRK08574        234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYY  277 (385)
T ss_pred             CHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEEC
Confidence            24556766666654332211888899999999999998876554

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.80  E-value=2.2e-17  Score=158.77  Aligned_cols=306  Identities=14%  Similarity=0.093  Sum_probs=178.1

Q ss_pred             ccccccc-cchhHhhhCC-CCCCCCCCCCHHHHHHHHHHhhhhcCCCCcccccc-ccCCChHHHHHHHH---HHhcc-CC
Q 017569           12 EILSSTF-ASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF-VTTWMEPECDKLVM---ASINK-NY   84 (369)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~-~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~-~~~~~~~~v~~~~~---~~~~~-n~   84 (369)
                      ++|+++| ..+|-.-++. +..+|+. .++.++++.+..+...+.....-++.+ .....|+.+.+.+.   +++.. .+
T Consensus        21 ~sieeL~~~~IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtP   99 (429)
T PF02347_consen   21 KSIEELFDSDIPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTP   99 (429)
T ss_dssp             SSTGGGG-TTS-GGG-SS-----------HHHHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCHHCCCS-ST
T ss_pred             CCHHHHhhhhCCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccChhhhccCCC
Confidence            5788999 7777644444 3456655 899999999999887654422112222 22233455555233   33332 34


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      ++++.++|.-+...+.+.+++++.|++.     .+...-.|++.+--.++++.+.. +         .++.+|++|...|
T Consensus       100 YQpEisQG~Lq~lfe~Qs~i~eLTGmdv-----aNaSlyd~atA~aEa~~ma~r~~-~---------~~~~~vlv~~~~h  164 (429)
T PF02347_consen  100 YQPEISQGRLQALFEYQSMICELTGMDV-----ANASLYDGATAAAEAMLMAVRAT-K---------RKRNKVLVPESLH  164 (429)
T ss_dssp             TSGGGBHHHHHHHHHHHHHHHHHHTSSE-----E-SEBSSCCHHHHHHHHHHHHHH-T---------T---EEEEETTS-
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhCCCc-----cCCCCCChhHHHHHHHHHHHHhc-c---------cCCcEEEEcCCcC
Confidence            5556677888888899999999999995     12334446664443333333332 0         0135899999999


Q ss_pred             chHHHHHh----hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          165 VCWEKFAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       165 ~s~~~~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      +.+...++    ..|++++.+|++++ +..|        ++++.+|++++||+. |.++++++|++++|++      +..
T Consensus       165 P~~~~v~~t~a~~~g~~iv~~~~~~~-~~~d--------~~~~a~v~vq~Pn~~-G~~ed~~~i~~~~h~~------gal  228 (429)
T PF02347_consen  165 PQTRAVLRTYAAPLGIEIVEVPLDED-GTTD--------DDDTAAVMVQNPNTF-GVFEDIKEIADIAHAA------GAL  228 (429)
T ss_dssp             CHHHHHHHHHCCHCCEEEEEE-BBTT-CSB---------STTEEEEEEESS-TT-SB--THHHHHHHHHHT------T-E
T ss_pred             hhhHHHHHHhhhhCCeEEEEeccccc-CCcc--------ccCeEEEEeecCCCC-ceEeeHHHHHHHHHHc------CCE
Confidence            98877544    46888999998764 5666        778999999999877 9999999999999999      988


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCC-----CCCCCeEEEEEeCCCCcccccccc-----cCccCCC
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-----LVYAGVGWVVWRTKDDLPDELVFH-----INYLGSD  310 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l-----~~p~g~g~l~~~~~~~~~~~~~~~-----~~y~~~~  310 (369)
                      +++ ++--.... .+.+  +-+   .|+|.+ ++.||-+     ++++++|++.+|+.  +.+.++..     .+-.+..
T Consensus       229 ~~~-~ad~~aL~-~l~~--Pge---~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lPGRiVG~t~D~~G~~  298 (429)
T PF02347_consen  229 VIV-GADPNALG-GLKS--PGE---YGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLPGRIVGQTKDADGKR  298 (429)
T ss_dssp             EEE-CGGCCGCC-TC----GGG---GT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS-S-EEEEEEBCCCSC
T ss_pred             EEE-ecCHHHHh-CcCC--hhh---cCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCCCceecccccccccc
Confidence            887 55221111 1111  222   389999 5556664     44467899999875  22222111     0111110


Q ss_pred             ---------CCC------ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          311 ---------QPT------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       311 ---------~~~------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                               ++.      ..--||-.+..++..++++..+|.+|++++  ++..+|+|++++|.+.
T Consensus       299 ~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  299 AFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             CEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             eeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     000      011278888888899999999999999999  9999999999999985

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK07179 hypothetical protein; Provisional

Probab=99.80  E-value=5.7e-18  Score=165.94  Aligned_cols=250  Identities=8%  Similarity=-0.066  Sum_probs=166.6

Q ss_pred             ChHHHHHHHHHHhccCCCCC---CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ..|.+.+++.++++.....+   ..+........++.+.+++++|.+.       .++++||++||..++.++...    
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~-------~~~~~sG~~An~~~l~~l~~~----  137 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES-------CLLCQSGWAANVGLLQTIADP----  137 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHhCCC----
Confidence            45788888888775432111   1111111233344456999999864       688999999999988876442    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                               ++.|+++...|.++...++..|+++..++      ..|+++|++++++ ++++|++..++|++|.+.|+++
T Consensus       138 ---------g~~v~~~~~~h~s~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~  202 (407)
T PRK07179        138 ---------NTPVYIDFFAHMSLWEGVRAAGAQAHPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLAD  202 (407)
T ss_pred             ---------CCEEEEECCcCHHHHHHHHHCCCeEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHH
Confidence                     36788999999999888888887765443      2489999999987 4788889999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      |.++|+++      ++++|+|++|+.+..+.........+. ..++|.++.+.||++++  +.|+++.++ +.. ..+..
T Consensus       203 I~~l~~~~------~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~-~~~-~~~~~  272 (407)
T PRK07179        203 IVDIAEEF------GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG--RAGIITCPR-ELA-EYVPF  272 (407)
T ss_pred             HHHHHHHc------CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc--cCeEEEeCH-HHH-HHHHH
Confidence            99999999      999999999986443100000000122 13679999999999864  368887753 221 12110


Q ss_pred             ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 ~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                       ..+.      ....+|.+...++++.++++.+... -..+ +..++.++|++.|++.|+
T Consensus       273 -~~~~------~~~~~t~~~~~~aa~~aal~~~~~~-~~~~~~l~~~~~~l~~~L~~~g~  324 (407)
T PRK07179        273 -VSYP------AIFSSTLLPHEIAGLEATLEVIESA-DDRRARLHANARFLREGLSELGY  324 (407)
T ss_pred             -hCcC------eeeCCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence             0000      0011333333445555667666332 1233 889999999999998864

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.80  E-value=1.1e-17  Score=163.03  Aligned_cols=211  Identities=17%  Similarity=0.115  Sum_probs=156.6

Q ss_pred             CccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++++...+.. +++.+.+++.+++......|....+..++++++++++.+.+|.+.+.  ...+++|+|+++|+.+++.
T Consensus        32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~~i~it~G~~~al~~~~~  109 (391)
T PRK07309         32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAP--ENEILVTIGATEALSASLT  109 (391)
T ss_pred             eEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHH
Confidence            34555554443 34567777777765444445555678999999999999888875321  1358999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGS  212 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~  212 (369)
                      ++..+             +++|++++++|..+...++..|++++.+|++++++.+|+++|++++++   ++++|++++|+
T Consensus       110 ~~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~  176 (391)
T PRK07309        110 AILEP-------------GDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPA  176 (391)
T ss_pred             HhcCC-------------CCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCC
Confidence            76432             468999999999999999999999999998765578999999999874   57899999999


Q ss_pred             CCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEEcCccCCC-CCCCeE
Q 017569          213 TLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGL-VYAGVG  286 (369)
Q Consensus       213 ~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~~~hK~l~-~p~g~g  286 (369)
                      ||||.+-   ++++|+++|+++      ++++++|++|+.+..  ..+. ...+.  ...--.+..+..|.++ ...++|
T Consensus       177 NPtG~~~s~~~~~~l~~~~~~~------~~~ii~D~~y~~~~~--~~~~-~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG  247 (391)
T PRK07309        177 NPTGVTYSREQIKALADVLKKY------DIFVISDEVYSELTY--TGEP-HVSIAEYLPDQTILINGLSKSHAMTGWRIG  247 (391)
T ss_pred             CCCCcCcCHHHHHHHHHHHHHc------CcEEEEEccccceee--CCCC-CCCHHHhccCCEEEEecChhhccCccceeE
Confidence            9999974   589999999999      999999999987553  1111 11111  1111244556889874 556789


Q ss_pred             EEEEe
Q 017569          287 WVVWR  291 (369)
Q Consensus       287 ~l~~~  291 (369)
                      +++..
T Consensus       248 ~~v~~  252 (391)
T PRK07309        248 LIFAP  252 (391)
T ss_pred             EEEeC
Confidence            99864

>PRK08068 transaminase; Reviewed

Probab=99.80  E-value=1.6e-17  Score=161.82  Aligned_cols=269  Identities=9%  Similarity=-0.060  Sum_probs=179.7

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ..++|+.+.|..+ ++.+.+.+.++++.. ...|...++..+|++++.+++.+.+|.+.+.  ...+++|+|+++++..+
T Consensus        33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~--~~~i~it~G~~~~l~~~  110 (389)
T PRK08068         33 DVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDP--ETEVAILFGGKAGLVEL  110 (389)
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccEEEcCCcHHHHHHH
Confidence            3456666655543 466778887777543 2345455788999999999998878865421  11478999999999887


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      +.++..+             ++.|+++.|+|..+...++..|++++.+|+++ +++.+|++++++++.+++++|+++.|+
T Consensus       111 ~~~~~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~  177 (389)
T PRK08068        111 PQCLMNP-------------GDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPN  177 (389)
T ss_pred             HHHhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCC
Confidence            7776432             47899999999999999999999999999975 357899999999998889999999999


Q ss_pred             CCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC---CCCcEEEEcCccCC-CCCCCe
Q 017569          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL---PLVKSINVSGHKYG-LVYAGV  285 (369)
Q Consensus       213 ~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~~Dsi~~~~hK~l-~~p~g~  285 (369)
                      ||||.+-+   +++|.++|+++      ++++++|.+|+.+..  -..........   ..-..+..+.-|.+ .....+
T Consensus       178 NPTG~~~s~~~~~~l~~la~~~------~~~ii~Deay~~~~~--~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRi  249 (389)
T PRK08068        178 NPTGAVATKAFFEETVAFAKKH------NIGVVHDFAYGAIGF--DGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRV  249 (389)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHc------CeEEEEehhhhhhcc--CCCCCcChhhCCCccCCEEEEecchhccCCcccee
Confidence            99999966   56788899999      999999999976432  11011011111   11224455778887 466788


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      |+++.. ++.+ ..+........         .+-+   ...+.++...+  +.+-++++  +..+..+++.+.|++.|+
T Consensus       250 G~~~~~-~~l~-~~l~~~~~~~~---------~~~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~  315 (389)
T PRK08068        250 AFAVGN-ESVI-EAINLLQDHLF---------VSLF---GAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIGW  315 (389)
T ss_pred             EeEecC-HHHH-HHHHHHHhhcc---------CCCC---hHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999853 3222 22211111000         1111   11222333333  22333444  667777888888888763

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.80  E-value=1.4e-17  Score=162.65  Aligned_cols=217  Identities=13%  Similarity=0.016  Sum_probs=159.9

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCCchHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      +.+.++|+.+.+.. +++.+.+++.+.++ ....|....+..++++++.+|+.+.+|.+ .+.  ...+++|+|+++++.
T Consensus        28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~~~i~it~G~~~al~  104 (396)
T PRK09147         28 DLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDP--ATQVLPVNGSREALF  104 (396)
T ss_pred             CCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc--cceEEECCChHHHHH
Confidence            34445666655553 35667888877765 34455556678899999999999988865 321  124888999999998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEee
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      +++.++.++          +.+++.|+++.|+|..+..+++..|++++.||+++ +++.+|+++|++.+.+++++++++.
T Consensus       105 ~~~~~l~~~----------~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~n  174 (396)
T PRK09147        105 AFAQTVIDR----------DGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCS  174 (396)
T ss_pred             HHHHHHcCC----------CCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcC
Confidence            888877541          12346899999999999999999999999999974 3478999999998888899999999


Q ss_pred             CCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-cc---CCCC---c--EEEEcCcc-
Q 017569          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR---LPLV---K--SINVSGHK-  277 (369)
Q Consensus       211 ~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~---~~~~---D--si~~~~hK-  277 (369)
                      |+||||.+-   .+++|+++|+++      ++|+++|.+|+.+...  ....... +.   ..+.   +  .+..+.-| 
T Consensus       175 P~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  246 (396)
T PRK09147        175 PGNPTGAVLPLDDWKKLFALSDRY------GFVIASDECYSEIYFD--EAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR  246 (396)
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHc------CeEEEeeccccccccC--CCCCCchhhhhccccCccccccEEEEeccccc
Confidence            999999985   588888999999      9999999999875431  1101110 00   0011   1  44456889 


Q ss_pred             CCCCCCCeEEEEEe
Q 017569          278 YGLVYAGVGWVVWR  291 (369)
Q Consensus       278 ~l~~p~g~g~l~~~  291 (369)
                      +++.+.++|+++..
T Consensus       247 ~~~~GlRiG~~~~~  260 (396)
T PRK09147        247 SNVPGLRSGFVAGD  260 (396)
T ss_pred             cCCccceeeeecCC
Confidence            56777899998763

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.80  E-value=1.4e-17  Score=163.43  Aligned_cols=215  Identities=16%  Similarity=0.118  Sum_probs=160.7

Q ss_pred             cCCCCccccccccC-----CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhC------CCCCCCCCCCe
Q 017569           53 DGNPRLNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFN------TPVADDKTAVG  120 (369)
Q Consensus        53 ~~~p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g------~~~~~~~~~~~  120 (369)
                      .+.+.++|+.+.|.     .+++.+.+++.++++.+ ...|....+..+|++++.+++.+.++      ...+   ...+
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~---~~~i  107 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK---KDNV  107 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC---hhhE
Confidence            44455677777775     34567888888877653 34455455789999999998887654      2211   1358


Q ss_pred             EEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHH
Q 017569          121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELV  199 (369)
Q Consensus       121 ~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i  199 (369)
                      ++|+|+++++.+++.++..+             ++.|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++
T Consensus       108 ~it~G~~~al~~~~~~~~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~  174 (412)
T PTZ00433        108 VLCSGVSHAILMALTALCDE-------------GDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLV  174 (412)
T ss_pred             EEeCChHHHHHHHHHHhcCC-------------CCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHh
Confidence            99999999999988887542             47899999999999999999999999999864 45899999999999


Q ss_pred             hhcCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--ccccCCCCcEE-EE
Q 017569          200 DENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSI-NV  273 (369)
Q Consensus       200 ~~~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~Dsi-~~  273 (369)
                      ++++++|++++|+||||.+.   ++++|+++|+++      ++++++|++|..+...  .....  ..+. ...+.+ .-
T Consensus       175 ~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~-~~~~~i~~~  245 (412)
T PTZ00433        175 DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEEL------RLPLISDEIYAGMVFN--GATFTSVADFD-TTVPRVILG  245 (412)
T ss_pred             ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CCeEEEeccccccccC--CCCccchhhcc-CCCceEEEc
Confidence            88899999999999999874   588889999999      9999999999865431  11100  1111 111233 44


Q ss_pred             cCccCC-CCCCCeEEEEEeC
Q 017569          274 SGHKYG-LVYAGVGWVVWRT  292 (369)
Q Consensus       274 ~~hK~l-~~p~g~g~l~~~~  292 (369)
                      +.-|.+ ....++|++++.+
T Consensus       246 SfSK~~~~pGlRlG~~i~~~  265 (412)
T PTZ00433        246 GTAKNLVVPGWRLGWLLLVD  265 (412)
T ss_pred             cchhhcCCCCeeEEEEEEeC
Confidence            678976 6778999999744

>PRK07550 hypothetical protein; Provisional

Probab=99.80  E-value=2e-17  Score=161.02  Aligned_cols=230  Identities=14%  Similarity=0.028  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHhhhhcCCCCccccccccCCC-hHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 017569           39 KEAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (369)
                      ..++++.+.+.- ..+.+.+.|+...+... ++.+.+.+.+.+.. ....|...++..+|++++++++.+..|...+.  
T Consensus        14 ~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--   90 (386)
T PRK07550         14 IPEVRAWLAGYD-GADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISP--   90 (386)
T ss_pred             HHHHHHHHHHHh-hcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--
Confidence            345555444332 12334455665555433 46677777766543 23345555689999999999999988876422  


Q ss_pred             CCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHH
Q 017569          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKA  195 (369)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L  195 (369)
                       ..+++|+|+++|+.+++.++..+             +++|+++.++|..+...++..|++++.+++++ +++.+|+++|
T Consensus        91 -~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l  156 (386)
T PRK07550         91 -EQVHITSGCNQAFWAAMVTLAGA-------------GDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAA  156 (386)
T ss_pred             -ceEEEecCcHHHHHHHHHHhcCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHH
Confidence             35889999999998888776442             47899999999999888899999999999974 4578999999


Q ss_pred             HHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCc-EE
Q 017569          196 VELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVK-SI  271 (369)
Q Consensus       196 ~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D-si  271 (369)
                      ++++++++++|+++.|+||||.+.+   +++|+++|+++      ++++++|.+|+.+......+............ ..
T Consensus       157 ~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~------~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~  230 (386)
T PRK07550        157 EALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRH------GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVH  230 (386)
T ss_pred             HHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CeEEEEeccchhhccCCCCCcchhhCCCccccEEE
Confidence            9999989999999999999999855   88999999999      99999999998643210001000111001112 33


Q ss_pred             EEcCccCCC-CCCCeEEEEEe
Q 017569          272 NVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       272 ~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      ..+..|.++ ...+.|+++..
T Consensus       231 ~~S~SK~~g~~G~RiG~i~~~  251 (386)
T PRK07550        231 LYSFSKSYALTGHRVGAVVAS  251 (386)
T ss_pred             EecchhhccCcccceEeeecC
Confidence            557889875 55678999874

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=6.6e-18  Score=160.24  Aligned_cols=249  Identities=12%  Similarity=0.027  Sum_probs=179.2

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      .....+++.+.+.+++...  ++...+||++    +++++|+..       .+.+++||.|+.++++++.-         
T Consensus        14 ~~~e~~~v~~vl~sg~i~~--G~~v~~FE~~----~ae~~G~k~-------ava~~sgT~AL~laL~al~i---------   71 (374)
T COG0399          14 GEEELAAVQEVLKSGWLTG--GPFVRRFEQA----FAEYLGVKY-------AVAVSSGTAALHLALLALAI---------   71 (374)
T ss_pred             chHHHHHHHHHHHcCCeec--ChHHHHHHHH----HHHHhCCCe-------EEEecChHHHHHHHHHhcCC---------
Confidence            3556788889998887764  6778888887    999999997       89999999999999997531         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                         ..+++||+|..++.+...++-+.|+++++|++|++++.||++.||++|+++|++|+   |....|..-|+++|.++|
T Consensus        72 ---g~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~dm~~i~~la  145 (374)
T COG0399          72 ---GPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAII---PVHLAGQPCDMDAIMALA  145 (374)
T ss_pred             ---CCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEE---EehhccCCCCHHHHHHHH
Confidence               12579999999999999999999999999999998899999999999999999987   566779888999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-cccCcc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-FHINYL  307 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~~~~y~  307 (369)
                      ++|      +++|+.|+|++.+..  ...+..-.  ...+-.+++-+.|.+.+. ..|+++..|+++...... ......
T Consensus       146 ~~~------~l~vIEDaAqa~Ga~--y~gk~vGt--~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~  214 (374)
T COG0399         146 KRH------GLPVIEDAAQAHGAT--YKGKKVGS--FGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLS  214 (374)
T ss_pred             HHc------CCeEEEEcchhccCe--ecCccccc--ccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcC
Confidence            999      999999999987664  22211111  334677888899999766 457888877654322111 111110


Q ss_pred             C-----CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          308 G-----SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       308 ~-----~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .     .....+..++-.+-..++-.+..|     +.++++  +..+++++..+.|++.+.
T Consensus       215 ~~~~~~y~~~~~G~N~rm~~iqAAigl~QL-----~~l~~~~~~R~~~a~~Y~~~l~~~~~  270 (374)
T COG0399         215 RDAVFKYLHEELGYNYRLTEIQAAIGLAQL-----ERLDEINERRREIAQIYAEALKGLPG  270 (374)
T ss_pred             CCccccceeeecccccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            0     000111111111111222222222     234444  888999999999987653

>PLN02509 cystathionine beta-lyase

Probab=99.80  E-value=2.1e-18  Score=169.86  Aligned_cols=218  Identities=11%  Similarity=0.042  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~  171 (369)
                      ..+++.++++++.|.+.       .+++++|+.|+.+++ .+.+             .+++|+++.+.|..+...    +
T Consensus       134 t~~aLE~~lA~leg~e~-------ai~~~SG~aAi~~il-~ll~-------------~GD~VI~~~~~y~~t~~ll~~~l  192 (464)
T PLN02509        134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVT-HLIK-------------NGEEIVAGDDVYGGSDRLLSQVV  192 (464)
T ss_pred             HHHHHHHHHHHHhCCCE-------EEEeCcHHHHHHHHH-HHhC-------------CCCEEEEcCCchhhHHHHHHHHH
Confidence            45667777999988764       677788887764433 3322             147899999999887633    4


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      ...|+.++.++.      .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++++.+.
T Consensus       193 ~~~G~~v~~vd~------~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~------g~~lIVD~A~a~~~  260 (464)
T PLN02509        193 PRSGVVVKRVNT------TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQ------GALVLVDNSIMSPV  260 (464)
T ss_pred             HHCCeEEEEeCC------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHc------CCEEEEECCccccc
Confidence            466888877753      268999999999999999999999999999999999999999      99999999987654


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      .  ..+   .   ..++|.++.+++||+.++.+  .|+++++++... ..+.. .....         ++  ......+|
T Consensus       261 ~--~~p---l---~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~-~~~~~-~~~~~---------g~--~l~p~~A~  319 (464)
T PLN02509        261 L--SRP---L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYF-LQNSE---------GS--GLAPFDCW  319 (464)
T ss_pred             c--CCh---h---hcCCcEEEecCcccccCCCccceeEEEeccHHHH-HHHHH-HHHhc---------CC--CcCHHHHH
Confidence            3  111   1   23799999999999988776  688877654321 11110 00000         11  12355677


Q ss_pred             HHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          330 YQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       330 ~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ..++.+..-..+-.+..++|+++++.|++++.+++-+|
T Consensus       320 l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~y  357 (464)
T PLN02509        320 LCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYY  357 (464)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            77776654333211999999999999999999887654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.80  E-value=2e-18  Score=167.16  Aligned_cols=214  Identities=9%  Similarity=0.034  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhh
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY  173 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~  173 (369)
                      +++.+.+++++|.+.       .+++++|+.|+..++. +..             .+++|+++.+.|.++..    .+..
T Consensus        50 ~~le~~la~l~g~~~-------~l~~~sG~~al~~~l~-ll~-------------~Gd~Vl~~~~~y~~~~~~~~~~~~~  108 (378)
T TIGR01329        50 TALESLLAKLDKADR-------AFAFSSGMAALDVITR-LLN-------------NGDEIIAGDDLYGGTDRLLTQVVPR  108 (378)
T ss_pred             HHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEcCCCchHHHHHHHHHHHH
Confidence            355566999999864       6777888888765443 322             14689999988877554    3455


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (369)
                      .|++++.++++      |++++++++++++++|++++|+||+|.+.|+++|+++|+++      ++++++|++++.+.. 
T Consensus       109 ~G~~v~~vd~~------d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~------g~~vivD~a~~~~~~-  175 (378)
T TIGR01329       109 SGVVVVHVDTT------DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ------NALVVVDNTMMSPLL-  175 (378)
T ss_pred             cCcEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence            79999888763      78999999999999999999999999999999999999999      999999999865432 


Q ss_pred             ccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHH
Q 017569          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ  331 (369)
Q Consensus       254 ~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~  331 (369)
                        ..  +..   .++|.+..|+|||+++|.+  .|+++++++... +.+.. .....         |..  ......|..
T Consensus       176 --~~--~l~---~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~-~~~~~-~~~~~---------G~~--~~~~~a~l~  235 (378)
T TIGR01329       176 --CN--PLE---LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIA-KKVYF-LQNST---------GSG--LAPFDCWLL  235 (378)
T ss_pred             --CC--hhh---cCCcEEEEecceeccCCccceeEEEEeCcHHHH-HHHHH-HHHhc---------CCc--CCHHHHHHH
Confidence              11  111   2789999999999998877  888888764332 11110 00000         111  113344544


Q ss_pred             HHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          332 FIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       332 l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ++.+  +.+..+  +..+++..++++|++.+..++-+|
T Consensus       236 ~~~l--~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~  271 (378)
T TIGR01329       236 LRGI--KTLAIRIEKQQENARAIAMFLSTHPRVKKVRY  271 (378)
T ss_pred             HccC--CCHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            4433  344444  899999999999999988865543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=5e-18  Score=166.60  Aligned_cols=230  Identities=14%  Similarity=0.005  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYF  174 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~  174 (369)
                      .+++.++++.|.+.       .+++++|+.|+.+++.++..             .+++||++...|.+..    ..+...
T Consensus        73 ~le~~la~l~g~~~-------~v~fsSG~~Ai~~al~~ll~-------------~Gd~VI~~~~~y~~t~~~~~~~l~~~  132 (437)
T PRK05613         73 ALENRIASLEGGVH-------AVAFASGQAAETAAILNLAG-------------AGDHIVTSPRLYGGTETLFLVTLNRL  132 (437)
T ss_pred             HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhcC-------------CCCEEEECCCccHHHHHHHHHHHHhc
Confidence            44445999999864       67777888999877776532             1478999998888763    445667


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |+++++++ ++.    |+++++++++++|++|++.+++||+|.+.|+++|+++|+++      ++++|||++++.+..  
T Consensus       133 Gi~v~~vd-~~~----d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~------gi~livD~t~a~g~~--  199 (437)
T PRK05613        133 GIEVTFVE-NPD----DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRN------QVPLIVDNTIATAAL--  199 (437)
T ss_pred             CeEEEEEC-CCC----CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCeEEEECCCccccc--
Confidence            99999988 332    78999999999999999999999999999999999999999      999999999875433  


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCCCCccc------ccc---cccCccC--CC-----CCC----
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKDDLPD------ELV---FHINYLG--SD-----QPT----  313 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~------~~~---~~~~y~~--~~-----~~~----  313 (369)
                      ..+   .   ..++|.++.|+|||++++. +.|.+++.++.....      ...   ....+..  ..     ...    
T Consensus       200 ~~p---~---~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (437)
T PRK05613        200 VRP---L---ELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLK  273 (437)
T ss_pred             cCh---H---HhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHH
Confidence            111   1   2389999999999996653 335555533221000      000   0000000  00     000    


Q ss_pred             ---ccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 ---FTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 ---~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                         ......-....+..+|..++.+..-..+-.++.++|..++++|++++.+++-+|
T Consensus       274 ~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y  330 (437)
T PRK05613        274 ARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF  330 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence               000011112345677776666655444422999999999999999998876554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.80  E-value=3.3e-18  Score=166.27  Aligned_cols=217  Identities=16%  Similarity=0.057  Sum_probs=156.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |...+||++    +++++|.+.       .+++++|++|+.+++.++..+             +++|+++.+.|.+....
T Consensus        61 p~~~~Le~~----lA~~~g~~~-------~i~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~y~~t~~~  116 (388)
T PRK07811         61 PTRTALEEQ----LAALEGGAY-------GRAFSSGMAATDCLLRAVLRP-------------GDHIVIPNDAYGGTFRL  116 (388)
T ss_pred             ccHHHHHHH----HHHHhCCCc-------eEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchHHHHH
Confidence            566667666    888999875       566778899999998887542             47899999998854332


Q ss_pred             H----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +    ...|++++.++.      .|+++|+++++++|++|+++.|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       117 ~~~~~~~~gi~~~~~d~------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~------gi~lIvD~a  184 (388)
T PRK07811        117 IDKVFTRWGVEYTPVDL------SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDA------GAKVVVDNT  184 (388)
T ss_pred             HHHhCcCCCeEEEEeCC------CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHc------CCEEEEECC
Confidence            2    235777666654      378999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..  ..|   .   ..++|.++.|++||+++|.+  .|++++++++.. ..+.....+.+.            ...
T Consensus       185 ~a~~~~--~~p---~---~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~-~~~~~~~~~~g~------------~~s  243 (388)
T PRK07811        185 FASPYL--QQP---L---ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELD-EAFAFLQNGAGA------------VPG  243 (388)
T ss_pred             CCcccc--CCc---h---hhCCcEEEecCceeecCCCCcEEEEEEECCHHHH-HHHHHHHHhcCC------------CCC
Confidence            986432  111   1   23789999999999987754  587877654332 211110011110            112


Q ss_pred             HHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      +...|..++.+..  +..+  +..++|+.++++|++.+.+++-+
T Consensus       244 ~~~a~l~~~~L~t--l~~R~~~~~~na~~la~~L~~~p~v~~V~  285 (388)
T PRK07811        244 PFDAYLTLRGLKT--LAVRMDRHSENAEAVAEFLAGHPEVSTVL  285 (388)
T ss_pred             HHHHHHHHhccCc--HHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence            4456766666654  3333  88899999999999998776543

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.80  E-value=3.5e-17  Score=160.15  Aligned_cols=215  Identities=15%  Similarity=0.153  Sum_probs=157.5

Q ss_pred             CCCCccccccccC-----CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch
Q 017569           54 GNPRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        54 ~~p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (369)
                      +...++|+.+.|.     ++++.+.+++.+++..+. ..|....+..++++++.+++....|.+.+   ....++|+|++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~ii~t~G~t  106 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLT---ADDVVLTSGCS  106 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC---HHHEEEecChH
Confidence            3444667777663     345678888888776543 34445567778888877666654454321   13488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEE
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (369)
                      +|+.+++.++..+             +++|+++.++|..+...++..|++++.+++++ +++.+|++++++++.++++++
T Consensus       107 ~al~~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v  173 (403)
T TIGR01265       107 QAIEICIEALANP-------------GANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAI  173 (403)
T ss_pred             HHHHHHHHHhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEE
Confidence            9999998887532             47899999999999999999999999998854 357899999999998889999


Q ss_pred             EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C-CCCcEEE-EcCccC-C
Q 017569          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKSIN-VSGHKY-G  279 (369)
Q Consensus       207 ~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Dsi~-~~~hK~-l  279 (369)
                      ++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...  .+.. ..+. . .....++ .|..|. +
T Consensus       174 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~~-~~~~~~~~~~~vi~~~S~SK~~~  244 (403)
T TIGR01265       174 VVINPSNPCGSVFSRDHLQKIAEVARKL------GIPIIADEIYGHMVFG--DAPF-IPMASFASIVPVLSLGGISKRWV  244 (403)
T ss_pred             EEecCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEccccccccC--CCCc-cchhhhccCCcEEEEeecccccC
Confidence            99999999999854   89999999999      9999999999876531  1110 1111 1 1112333 357887 5


Q ss_pred             CCCCCeEEEEEeCC
Q 017569          280 LVYAGVGWVVWRTK  293 (369)
Q Consensus       280 ~~p~g~g~l~~~~~  293 (369)
                      ....++|++++.++
T Consensus       245 ~pGlRiG~~v~~~~  258 (403)
T TIGR01265       245 VPGWRLGWIIIHDP  258 (403)
T ss_pred             CCcceEEEEEEeCc
Confidence            66688999988643

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.80  E-value=3.5e-18  Score=165.23  Aligned_cols=219  Identities=14%  Similarity=0.054  Sum_probs=158.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||+.    +++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.....
T Consensus        39 ~p~~~~le~~----la~l~g~~~-------a~~~~sG~~Ai~~~l~~l~~~-------------gd~Vl~~~~~y~~~~~   94 (369)
T cd00614          39 NPTVDALEKK----LAALEGGEA-------ALAFSSGMAAISTVLLALLKA-------------GDHVVASDDLYGGTYR   94 (369)
T ss_pred             ChhHHHHHHH----HHHHHCCCC-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEECCCCcchHHH
Confidence            3455666655    888888764       788899999999998887542             4689999988876543


Q ss_pred             ----HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                          .+...|++++.++.+      |++++++++++++++|++.+++||+|.+.|+++|+++|+++      ++++++|+
T Consensus        95 ~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~------g~~livD~  162 (369)
T cd00614          95 LFERLLPKLGIEVTFVDPD------DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEH------GALLVVDN  162 (369)
T ss_pred             HHHHHHhhcCeEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence                445678888887754      58999999988999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..  ..+   .   ..++|.++.+.+|+++++..  .|+++.++++.. +.+.....+.          |+  ..
T Consensus       163 t~~~~~~--~~~---~---~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~-~~l~~~~~~~----------g~--~~  221 (369)
T cd00614         163 TFATPYL--QRP---L---ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALI-QRLRFLRLAL----------GT--IL  221 (369)
T ss_pred             CCcchhc--CCh---h---hhCCcEEEeccceeccCCCCceEEEEEeCcHHHH-HHHHHHHHhh----------CC--CC
Confidence            9986543  111   1   12789999999999976643  577777542322 2221111111          11  11


Q ss_pred             HHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCcccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      ....+|..++.+..... .+ +..++|++++++|++.+.+++.+
T Consensus       222 ~p~~a~~~l~~l~tl~~-r~~~~~~na~~la~~L~~~~~v~~V~  264 (369)
T cd00614         222 SPFDAWLLLRGLKTLPL-RMERHSENALKVAEFLEKHPKVERVY  264 (369)
T ss_pred             CHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHcCCCccEEE
Confidence            35667777777643222 23 88999999999999998766543

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.80  E-value=3.6e-18  Score=166.58  Aligned_cols=221  Identities=11%  Similarity=-0.022  Sum_probs=159.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc----c
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ----V  165 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h----~  165 (369)
                      .|...+||+.    ++++.|.+.       .+++++|+.|+..++.++..+             +++|+++...|    .
T Consensus        69 ~p~~~~le~~----lA~l~g~~~-------al~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~~~~t~~  124 (403)
T PRK07810         69 NPTVSMFEER----LRLIEGAEA-------CFATASGMSAVFTALGALLGA-------------GDRLVAARSLFGSCFV  124 (403)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECChHHHHHHHHHHHhCC-------------CCEEEEccCCcchHHH
Confidence            3455666665    899999874       799999999998888776432             46888887544    3


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .+...++..|+++++++.+      |+++++++++++|++|++.+|+||+|.+.|+++|+++|+++      ++++++|+
T Consensus       125 ~~~~~~~~~G~~v~~vd~~------d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~------g~~vivD~  192 (403)
T PRK07810        125 VCNEILPRWGVETVFVDGE------DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAA------GAKVVLDN  192 (403)
T ss_pred             HHHHHHHHcCcEEEEECCC------CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEEC
Confidence            4556677789999888742      78999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..  ..+   .   ..++|.++.|++||++++..  .|+++.++ +.+...+.   .+..    ..   |.  ..
T Consensus       193 a~a~~~~--~~~---~---~~gaDivv~S~tK~l~g~g~~~gG~v~~~~-~~~~~~l~---~~~~----~~---g~--~~  251 (403)
T PRK07810        193 VFATPLL--QRG---L---PLGADVVVYSGTKHIDGQGRVLGGAILGDR-EYIDGPVQ---KLMR----HT---GP--AL  251 (403)
T ss_pred             CCCcccc--CCh---h---hcCCcEEEccCCceecCCcCceeEEEEeCh-HHHHHHHH---HHHH----Hh---CC--CC
Confidence            9985433  111   1   23789999999999976443  47666543 22211111   0100    00   11  22


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ....+|..++.+..-..+-.+..++|.+++++|++++.+++-+|
T Consensus       252 s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~y  295 (403)
T PRK07810        252 SAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRY  295 (403)
T ss_pred             CHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence            46677777776654333322899999999999999998887654

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.80  E-value=4.9e-18  Score=165.34  Aligned_cols=220  Identities=10%  Similarity=-0.013  Sum_probs=156.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~-  168 (369)
                      .|...++|+.    ++++.|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.+.. 
T Consensus        63 ~p~~~~le~~----lA~l~g~~~-------~i~~ssG~~Ai~~~l~all~~-------------GD~Vi~~~~~y~~~~~  118 (398)
T PRK08249         63 NPTVQAFEEK----VRILEGAEA-------ATAFSTGMAAISNTLYTFLKP-------------GDRVVSIKDTYGGTNK  118 (398)
T ss_pred             ChHHHHHHHH----HHHHhCCCe-------EEEeCChHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHH
Confidence            3455555555    899999864       688888899998888776442             478999999998643 


Q ss_pred             ---HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          169 ---KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       169 ---~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                         ..+...|+++++++.      .|+++++++|+++|++|++++|+||+|.+.|+++|+++|+++      ++++++|+
T Consensus       119 ~~~~~~~~~Gi~v~~vd~------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~------gi~livD~  186 (398)
T PRK08249        119 IFTEFLPRMGVDVTLCET------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKV------GALVVVDN  186 (398)
T ss_pred             HHHHHHhhCCeEEEEcCC------CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHc------CCEEEEEC
Confidence               345567888776653      478999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..   ..  +.   ..++|.++.|++|+++++..  .|+++ .+++.. ..+.......          ++  ..
T Consensus       187 t~a~~~~---~~--~l---~~~~Divv~S~sK~l~g~~~~~gG~vv-~~~~l~-~~l~~~~~~~----------g~--~~  244 (398)
T PRK08249        187 TFATPIN---QN--PL---ALGADLVIHSATKFLSGHADALGGVVC-GSKELM-EQVYHYREIN----------GA--TM  244 (398)
T ss_pred             CcCcccc---CC--ch---hhCCCEEeccCceecCCCCCceEEEEE-CCHHHH-HHHHHHHHhc----------CC--CC
Confidence            9985432   11  11   23789999999999976543  35544 443332 2211100001          11  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ....+|..++.+..-..+..+..++|+.++++|++.+.+++-+|
T Consensus       245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~y  288 (398)
T PRK08249        245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYY  288 (398)
T ss_pred             CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            35667777766544322211888999999999999998886654

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.80  E-value=9.3e-18  Score=154.47  Aligned_cols=216  Identities=17%  Similarity=0.165  Sum_probs=163.2

Q ss_pred             CCccccccccCC-----ChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVTTW-----MEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~~~-----~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      |.+.++.+.|+.     ..+++.+++.+++..+. ..|..+.|...-++++.+++.+-+...-   ....+++|+|.++|
T Consensus        62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl---~a~DV~ltsGC~qA  138 (447)
T KOG0259|consen   62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKL---TADDVVLTSGCSQA  138 (447)
T ss_pred             eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCcc---CcCceEEeccchHH
Confidence            445555555542     23667788888887764 4466777888778886666554333332   22348999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhhcCcEEEE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      +-+++.++.++             +..|++|.|+++-|...+...|++|+..++- +.+|++|++.+|.+++++|.++++
T Consensus       139 Ie~~i~~LA~p-------------~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv  205 (447)
T KOG0259|consen  139 IELAISSLANP-------------GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV  205 (447)
T ss_pred             HHHHHHHhcCC-------------CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE
Confidence            99999987553             4689999999999999999999999999974 456999999999999999999999


Q ss_pred             eeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCCCCcEEEEc--CccCCCCC
Q 017569          209 ILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVS--GHKYGLVY  282 (369)
Q Consensus       209 ~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Dsi~~~--~hK~l~~p  282 (369)
                      ..|+||+|.+   +-+++|+++|+++      ++.++.|++|+..+++ -.|-.+ -.|. .-+-.+|.+  +.-|+-.+
T Consensus       206 iNP~NPcGnVys~~HL~kiae~A~kl------gi~vIaDEVY~~~vfg-~~pfvpmg~fs-siVPVitlggisKrW~VPG  277 (447)
T KOG0259|consen  206 INPNNPCGNVYSEDHLKKIAETAKKL------GIMVIADEVYGHTVFG-DKPFVPMGKFS-SIVPVITLGGISKRWIVPG  277 (447)
T ss_pred             eCCCCCCcccccHHHHHHHHHHHHHh------CCeEEehhhcceeecC-CCCccchhhcc-ccCceEeecccccccccCC
Confidence            9999999998   5699999999999      9999999999987762 011111 1121 123344444  57788777


Q ss_pred             CCeEEEEEeCCCC
Q 017569          283 AGVGWVVWRTKDD  295 (369)
Q Consensus       283 ~g~g~l~~~~~~~  295 (369)
                      |..||+++.|+.-
T Consensus       278 WRlGWi~~hD~~g  290 (447)
T KOG0259|consen  278 WRLGWIALHDPRG  290 (447)
T ss_pred             ceeeeEEEecccc
Confidence            9999999988643

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.79  E-value=1.9e-18  Score=166.93  Aligned_cols=220  Identities=14%  Similarity=0.000  Sum_probs=164.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++-|.+.       ..++++|+.|+..++.++..+             +++|+++...|.....
T Consensus        61 nPt~~~le~~----la~LEg~~~-------a~~~~SGmaAi~~~~~~ll~~-------------GD~Vv~~~~~Yg~t~~  116 (395)
T PRK08114         61 TLTHFSLQEA----MCELEGGAG-------CALYPCGAAAVANAILAFVEQ-------------GDHVLMTGTAYEPTQD  116 (395)
T ss_pred             ChhHHHHHHH----HHHHhCCCe-------EEEEhHHHHHHHHHHHHHcCC-------------CCEEEEeCCCcHHHHH
Confidence            3566777766    888888764       788888999999888877442             4789998888766554


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC--ceEEe
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD--TPIHV  243 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~--~~l~v  243 (369)
                      .    ++..|+++++++.      .|.++++++|+++|++|++.+++||+|.+.|+++|+++|+++      +  ++++|
T Consensus       117 l~~~~l~~~Gi~v~~vd~------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~------g~g~~lvV  184 (395)
T PRK08114        117 FCSKILSKLGVTTTWFDP------LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSV------NPDAVIMI  184 (395)
T ss_pred             HHHHHHHhcCcEEEEECC------CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHh------CCCCEEEE
Confidence            4    3557999888774      257889999999999999999999999999999999999998      5  99999


Q ss_pred             ecccccccccccCCCccccccCCCCcEEEEcCccCCCCCC--CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcc
Q 017569          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~  321 (369)
                      |++++.+..  +.|      ...++|.+..|+|||++++.  ..|+++.+ ++.. ..+.. ..+..         |.  
T Consensus       185 DnT~a~p~~--~~p------l~~GaDivv~S~tKyl~Ghsdv~~G~v~~~-~~~~-~~l~~-~~~~~---------G~--  242 (395)
T PRK08114        185 DNTWAAGVL--FKA------LDFGIDISIQAGTKYLVGHSDAMIGTAVAN-ARCW-EQLRE-NSYLM---------GQ--  242 (395)
T ss_pred             ECCCccccc--cCH------HHcCCcEEEEcCcccccCCCcceeEEEEcC-HHHH-HHHHH-HHHhc---------cC--
Confidence            999986443  222      13389999999999999985  66766543 2221 11110 00110         11  


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ...+...|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       243 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~y  288 (395)
T PRK08114        243 MVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNH  288 (395)
T ss_pred             CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEEC
Confidence            3347788887777766555533999999999999999999887665

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.79  E-value=1.1e-17  Score=162.94  Aligned_cols=264  Identities=14%  Similarity=-0.002  Sum_probs=172.6

Q ss_pred             CCCCccccccc-cCC-ChHHHHHHHHHHhccCCCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           54 GNPRLNLASFV-TTW-MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        54 ~~p~~~l~~~~-~~~-~~~~v~~~~~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      ++...+|.+.. ++. .++.+.+++.+++..+...+.   ...+..++++++++++++++|.+.       .+++++|++
T Consensus        41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~-------~i~~tsG~~  113 (397)
T PRK06939         41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTED-------AILYSSCFD  113 (397)
T ss_pred             CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------EEEEcChHH
Confidence            34445665544 333 457788888887765432221   234678889999999999999753       344444588


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------c
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------N  202 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~  202 (369)
                      ++..++.++.+             .++.|++++++|+++...++..|++++.++.      +|+++|++++++      +
T Consensus       114 a~~~~~~~l~~-------------~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~~~~~~~  174 (397)
T PRK06939        114 ANGGLFETLLG-------------KEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMADLEAQLKEAKEAGAR  174 (397)
T ss_pred             HHHHHHHHhCC-------------CCCEEEEEhhhhHHHHHHHHhcCCceEEeCC------CCHHHHHHHHHhhhccCCC
Confidence            88877766533             2478999999999999999999988776653      478888888864      6


Q ss_pred             CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCC
Q 017569          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV  281 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~  281 (369)
                      +++|+.....+++|.+.++++|.++|+++      ++|+++|++|+.+..+........... ...+|.++.+++|++++
T Consensus       175 ~~~v~~~~v~~~~G~~~~~~~l~~la~~~------~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g  248 (397)
T PRK06939        175 HKLIATDGVFSMDGDIAPLPEICDLADKY------DALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGG  248 (397)
T ss_pred             CeEEEEecCcCCCCCcCCHHHHHHHHHHh------CCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCc
Confidence            77777766788999999999999999999      999999999964322110000001111 23578899999999965


Q ss_pred             CCCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhc
Q 017569          282 YAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~  359 (369)
                      + ..|+++.++ +.. +.+... ..+.        ..++.......++..+++.+. ++-... +..++.+++++.|++.
T Consensus       249 ~-r~G~v~~~~-~~~-~~l~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        249 A-SGGYTAGRK-EVI-DWLRQRSRPYL--------FSNSLAPAIVAASIKVLELLE-ESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             c-CceEEEeCH-HHH-HHHHHhCcccc--------ccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHc
Confidence            5 568887643 222 222111 1111        112222222344445566553 221223 7888999999999887


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |+
T Consensus       317 ~~  318 (397)
T PRK06939        317 GF  318 (397)
T ss_pred             CC
Confidence            64

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.79  E-value=7.3e-18  Score=163.91  Aligned_cols=219  Identities=15%  Similarity=0.090  Sum_probs=157.7

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc----h
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV----C  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~----s  166 (369)
                      |...+||+.    +++++|.+.       .+++++|+.|+.+++.++..+             +++|+++.+.|.    .
T Consensus        59 p~~~~le~~----lA~l~g~~~-------av~~~sG~~Ai~~~l~al~~~-------------Gd~Vi~~~~~y~~t~~~  114 (391)
T TIGR01328        59 PTVSNLEGR----IAFLEGTEA-------AVATSSGMGAIAATLLTILKA-------------GDHLISDECLYGCTFAL  114 (391)
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEecCcchHHHHH
Confidence            455666666    899999875       688999999998888776432             468999988664    3


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+...|+.++.++++      |+++++++++++|++|++.+|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       115 ~~~~~~~~G~~~~~vd~~------d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~------gi~livD~a  182 (391)
T TIGR01328       115 LEHALTKFGIQVDFINMA------IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQ------GVKVIVDNT  182 (391)
T ss_pred             HHHHHhcCCeEEEEECCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECC
Confidence            455566789888888764      68999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchh
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      |+.+..  ..+   .   ..++|.++.|++|+++++.+  .|+++ .+++... .+.. ......         |.  ..
T Consensus       183 ~a~~~~--~~~---~---~~g~Divv~S~sK~lgg~g~~~gG~v~-~~~~li~-~l~~~~~~~~~---------g~--~l  241 (391)
T TIGR01328       183 FATPML--TNP---V---ALGVDVVVHSATKYIGGHGDVVAGLIC-GKAELLQ-QIRMVGIKDMT---------GS--VI  241 (391)
T ss_pred             Cchhcc--CCc---h---hcCCCEEEccccccccCCCCceEEEEE-cCHHHHH-HHHHHHHHhCC---------CC--CC
Confidence            975432  111   1   23799999999999987664  46554 4443331 1111 001010         11  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ....+|..++.+..-..+ + +..++|++++++|++.+.++.-+|
T Consensus       242 ~~~~a~l~l~~L~tl~~r-~~~~~~na~~la~~L~~~p~v~~v~y  285 (391)
T TIGR01328       242 SPFDAWLILRGLKTLNIR-MKRHSENAMKVAEYLKSHPAVEKVYY  285 (391)
T ss_pred             CcHHHHHHHhCcCcHHHH-HHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            345566666655432222 3 889999999999999988776543

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.79  E-value=5.2e-18  Score=164.38  Aligned_cols=219  Identities=15%  Similarity=0.016  Sum_probs=157.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |...+||+.    ++++.|.+.       +++++||++|+..++.++..+             +++|+++.+.|......
T Consensus        51 p~~~~le~~----lA~l~g~~~-------v~~~~gg~~Ai~~~l~all~~-------------GD~Vl~~~p~y~~~~~~  106 (382)
T TIGR02080        51 PTRDLLQQA----LAELEGGAG-------AVVTNTGMSAIHLVTTALLGP-------------DDLLVAPHDCYGGTYRL  106 (382)
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEEcCCCcHHHHHH
Confidence            344555554    888888543       899999999999988887442             47899999999754433


Q ss_pred             H-hhh---cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 A-RYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ~-~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      + .+.   |+.+..++  .    .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       107 ~~~~~~~~~~~v~~~d--~----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~------g~~vvvD~a  174 (382)
T TIGR02080       107 LNALAKKGCFRVLFVD--Q----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV------GAVVVVDNT  174 (382)
T ss_pred             HHHHHhhcCeEEEEEC--C----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc------CCEEEEECC
Confidence            2 222   44554443  1    278999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |..+..  ..     .+ ..++|.++.+++||++++.+  .|+++.++++.. +.+.....+.+.            ...
T Consensus       175 ~~~~~~--~~-----pl-~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~-~~l~~~~~~~g~------------~~s  233 (382)
T TIGR02080       175 FLSPAL--QN-----PL-ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVA-EELAWWANNLGV------------TGG  233 (382)
T ss_pred             Cccccc--CC-----ch-hhCCCEEEeecceeccCCCCceeEEEEeCCHHHH-HHHHHHHHccCC------------CCC
Confidence            975432  11     11 12689999999999988776  677777655432 221111111111            123


Q ss_pred             HHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ++..|..++.+..-..+ + ++.++|..++++|++.+.+++-+|
T Consensus       234 p~~a~l~lr~l~tl~~R-~~~~~~na~~~a~~L~~~p~v~~V~y  276 (382)
T TIGR02080       234 AFDSYLTLRGLRTLVAR-MRLQQRNAQAIVEYLQTQPLVKKIYY  276 (382)
T ss_pred             HHHHHHHHcccchHHHH-HHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            66778777766544444 3 888999999999999998876554

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.79  E-value=4.9e-18  Score=165.13  Aligned_cols=217  Identities=15%  Similarity=0.082  Sum_probs=154.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...++|+.    +++++|.+.       .+++++|+.|+..++. +..             .+++|+++.+.|.+    
T Consensus        54 p~~~~le~~----lA~l~g~~~-------~v~~~sG~~ai~~~l~-~l~-------------~Gd~Vlv~~~~y~~~~~~  108 (390)
T PRK08064         54 PTREALEDI----IAELEGGTK-------GFAFASGMAAISTAFL-LLS-------------KGDHVLISEDVYGGTYRM  108 (390)
T ss_pred             hhHHHHHHH----HHHHhCCCC-------eEEECCHHHHHHHHHH-HhC-------------CCCEEEEccCccchHHHH
Confidence            445555554    899999874       4666777888876664 322             14689999988864    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...++..|++++.++++      |+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       109 ~~~~~~~~G~~v~~v~~~------d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~------g~~vvvD~a  176 (390)
T PRK08064        109 ITEVLSRFGIEHTFVDMT------NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAI------GCLTFVDNT  176 (390)
T ss_pred             HHHHHHHcCCEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHc------CCEEEEECC
Confidence            334556689999998863      68999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..  ..+   .   ..++|.++.++|||++++.+  .|++++++++.. +.+..    ...   .+   |.  ...
T Consensus       177 ~~~~~~--~~~---~---~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~-~~l~~----~~~---~~---g~--~~~  235 (390)
T PRK08064        177 FLTPLL--QKP---L---DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELA-QKLYF----LQN---SF---GA--VLG  235 (390)
T ss_pred             CCcccc--cCc---h---hhCCcEEEeecceeccCCccceeEEEEeCCHHHH-HHHHH----HHH---hc---CC--CCC
Confidence            876432  111   1   23789999999999988887  488887654332 12110    000   00   00  112


Q ss_pred             HHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +...|..++.+.  .+..+  +..+++..+++.|++++.+++.++
T Consensus       236 ~~~a~l~~~gl~--tl~~R~~~~~~~a~~la~~L~~~~~v~~v~y  278 (390)
T PRK08064        236 VQDCWLVLRGLK--TLHVRLEHSSETANKIALYLQEHPKVQNVYY  278 (390)
T ss_pred             HHHHHHHHcccC--cHHHHHHHHHHHHHHHHHHHhcCCCcceEEC
Confidence            345555444333  34333  889999999999999998877654

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1.2e-17  Score=163.86  Aligned_cols=232  Identities=13%  Similarity=0.031  Sum_probs=160.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s---  166 (369)
                      .|....||+.    ++++.|.+.       .+++++|+.|+..++.++..+             +++|+++.+.|..   
T Consensus        63 ~p~~~~Le~~----lA~leg~~~-------al~~~sG~~Ai~~al~~ll~~-------------GD~Vlv~~~~y~~t~~  118 (431)
T PRK08248         63 NPTTDVFEKR----IAALEGGIG-------ALAVSSGQAAITYSILNIASA-------------GDEIVSSSSLYGGTYN  118 (431)
T ss_pred             CchHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEccCchhhHHH
Confidence            4556666666    899999764       799999999999988876442             4789999987754   


Q ss_pred             -HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          167 -WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       167 -~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                       +...++..|++++++++.      |++++++++++++++|++++++||+|.+.|+++|+++|+++      ++++++|+
T Consensus       119 ~~~~~~~~~Gv~v~~vd~~------d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~------gi~vIvD~  186 (431)
T PRK08248        119 LFAHTLPKLGITVKFVDPS------DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEH------GIPLIVDN  186 (431)
T ss_pred             HHHHHHHhCCEEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEeC
Confidence             345566789999888753      78999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCCCCccc---c---cc-cccCccCCCC-C----
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKDDLPD---E---LV-FHINYLGSDQ-P----  312 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~---~---~~-~~~~y~~~~~-~----  312 (369)
                      +++.+..   .    ..+ ..++|.++.++|||+++|. ..|.+++.+.+....   .   +. ....|..... .    
T Consensus       187 t~a~~~~---~----~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (431)
T PRK08248        187 TFASPYL---L----RPI-EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGE  258 (431)
T ss_pred             CCCcccc---C----Chh-HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhch
Confidence            9874321   1    111 2489999999999998775 356666643321100   0   00 0011100000 0    


Q ss_pred             -C---------ccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          313 -T---------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       313 -~---------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                       .         ....|  ....+..+|..++.+..-..+-.++.++|..++++|++++.+++-+|
T Consensus       259 ~~~~~~~~~~~~~~~G--~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~y  321 (431)
T PRK08248        259 AAYITKARVQLLRDLG--AALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSY  321 (431)
T ss_pred             hhHHHHHHHHHHHhcC--CCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence             0         00002  12235566666655544333322999999999999999999886554

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.79  E-value=7.2e-18  Score=164.50  Aligned_cols=224  Identities=15%  Similarity=0.063  Sum_probs=160.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 017569           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (369)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~  168 (369)
                      ..|...+||++    +++++|.+.       .++++||+.|+..++.++.++             +++|+++.+.|.+..
T Consensus        62 ~~p~~~~Le~~----iA~~~g~~~-------~l~~~sG~~Ai~~al~~ll~~-------------Gd~Vl~~~~~y~~~~  117 (400)
T PRK06234         62 GNPTSTEVENK----LALLEGGEA-------AVVAASGMGAISSSLWSALKA-------------GDHVVASDTLYGCTF  117 (400)
T ss_pred             CCccHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHHHHHhCC-------------CCEEEEecCccchHH
Confidence            34677778777    788888653       789999999998888776542             468999998776533


Q ss_pred             ----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          169 ----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       169 ----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                          ..++..|+++++++.+      |+++++++++++|++|++++|+||+|.+.|+++|+++|++++.    ++++++|
T Consensus       118 ~~~~~~~~~~G~~v~~vd~~------d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~----~i~livD  187 (400)
T PRK06234        118 ALLNHGLTRYGVEVTFVDTS------NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNK----ECLVFVD  187 (400)
T ss_pred             HHHHHHHhhCCeEEEEECCC------CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCC----CCEEEEE
Confidence                4456789888888753      7899999999999999999999999999999999999999511    8999999


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcc
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~  321 (369)
                      ++|+.+..  ..   +.   ..++|.++.|++|+++++..  .|+++.++ +.. +.+.. ...+.      +   |  .
T Consensus       188 ea~~~~~~--~~---~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~-~~l~~~~~~~~------~---g--~  246 (400)
T PRK06234        188 NTFCTPYI--QR---PL---QLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFI-NQVKLFGIKDM------T---G--S  246 (400)
T ss_pred             CCCCchhc--CC---ch---hhCCcEEEeeccccccCCCCceeEEEEecH-HHH-HHHHHHHHHHh------c---C--C
Confidence            99986543  11   11   12789999999999976643  47777654 222 22210 00100      0   1  1


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ...+...|..++.+..-..+-.+..++|++++++|++.+.+++.+|
T Consensus       247 ~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~  292 (400)
T PRK06234        247 VIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYY  292 (400)
T ss_pred             CCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            2235666777776654333222788999999999999998876554

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.79  E-value=9.1e-18  Score=160.98  Aligned_cols=243  Identities=12%  Similarity=0.027  Sum_probs=157.9

Q ss_pred             HHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 017569           74 KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD  153 (369)
Q Consensus        74 ~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~  153 (369)
                      +++.+.+.....  ...+...++|+.    +++++|.+.       .+++++|++|+..++.++...            .
T Consensus         3 ~~~~~~~~~~~~--~~~~~~~~~~~~----la~~~~~~~-------~~~~~sgt~al~~~l~~l~~~------------~   57 (352)
T cd00616           3 EAVEEVLDSGWL--TLGPKVREFEKA----FAEYLGVKY-------AVAVSSGTAALHLALRALGIG------------P   57 (352)
T ss_pred             HHHHHHHHcCCc--cCCHHHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHcCCC------------C
Confidence            344555555433  234555556555    888888753       788899999999888876311            2


Q ss_pred             CCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhh
Q 017569          154 KPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNE  233 (369)
Q Consensus       154 ~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~  233 (369)
                      +++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|+++   +++|.+.|+++|.++|+++  
T Consensus        58 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~--  132 (352)
T cd00616          58 GDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPRTKAIIPV---HLYGNPADMDAIMAIAKRH--  132 (352)
T ss_pred             CCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCCHHHHHHHHHHc--
Confidence            46899999999999999999999999999987458999999999998889888865   4689999999999999999  


Q ss_pred             ccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc--CccCCCCCCCeEEEEEeCCCCccccccc--ccCccCC
Q 017569          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVF--HINYLGS  309 (369)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~--~~~y~~~  309 (369)
                          ++++++|++++.+...  ...   ... ...|..++|  .|||+.++. .|+++.++++... .+..  ...+...
T Consensus       133 ----~i~li~D~a~~~g~~~--~~~---~~~-~~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~-~~~~~~~~~~~~~  200 (352)
T cd00616         133 ----GLPVIEDAAQALGATY--KGR---KVG-TFGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAE-RARLLRNHGRDRD  200 (352)
T ss_pred             ----CCeEEEECCCCCCCeE--CCE---Ecc-cCcceeEEcCCCCCCCcccC-ceEEEECCHHHHH-HHHHHHHcCCCCC
Confidence                9999999999865431  110   011 123555555  559995444 3667776544321 1110  0000000


Q ss_pred             CC-CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          310 DQ-PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       310 ~~-~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .. ......+.......+.....+.  ..+++.++  +..++++++++.|++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~~~~~L~~~~  252 (352)
T cd00616         201 RFKYEHEILGYNYRLSEIQAAIGLA--QLEKLDEIIARRREIAERYKELLADLP  252 (352)
T ss_pred             CCccccceeeeccCcCHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            00 0000001111112233333332  23445555  78899999999999864

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.79  E-value=1.6e-17  Score=162.56  Aligned_cols=264  Identities=11%  Similarity=0.004  Sum_probs=174.4

Q ss_pred             CChHHHHHHHHHHhcc-CC-C-----CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NY-V-----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~-~-----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ..++.+.+++...+.+ .. +     +|.......++|..+.+...++||++..      .+=..+|+.||+.++.++..
T Consensus        60 ~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a------nvqp~Sg~~An~~v~~all~  133 (493)
T PRK13580         60 YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA------YVQPHSGADANLVAFWAILA  133 (493)
T ss_pred             cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc------cccCCCcHHHHHHHHHHHhc
Confidence            3457777777655533 11 1     1122235789999999999999999862      34445889999999998875


Q ss_pred             H----------------------HHHHHHhcCCCCCCCeEEec---CCCcchHHHHHhhhc--ceeEEEeccCCccccCH
Q 017569          140 K----------------------WQQKRKEQGKPYDKPNIVTG---ANVQVCWEKFARYFE--VELKEVKLEEGYYVMNP  192 (369)
Q Consensus       140 ~----------------------~~~~~~~~g~~~~~~~Vi~s---~~~h~s~~~~~~~~G--~~v~~v~~~~~~~~~d~  192 (369)
                      +                      |.+-|+.    ..+++|+.-   .-.|.+........|  ..++..+++++++.+|+
T Consensus       134 ~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~----~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~  209 (493)
T PRK13580        134 HKVESPALEKLGAKTVNDLTEEDWEALRAE----LGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDY  209 (493)
T ss_pred             ccccCcchhccccccccccchhhhhhhhcc----CCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCH
Confidence            3                      1111111    114566543   223433322233334  45666777765689999


Q ss_pred             HHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEE
Q 017569          193 VKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSI  271 (369)
Q Consensus       193 ~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi  271 (369)
                      +++++.+.++++.|+++..++. |.+.|+++|+++|+++      +++++||+|++.+.++.  ...+... ...++|++
T Consensus       210 d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~------gA~L~VD~AH~~Gligg--~~~~~~~~~~~~~D~v  280 (493)
T PRK13580        210 DEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEV------GAVLMVDMAHFAGLVAG--KVFTGDEDPVPHADIV  280 (493)
T ss_pred             HHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHc------CCEEEEECchhhceecc--ccchhhcCCCCCCcEE
Confidence            9999999999889898988888 5577999999999999      99999999999887641  1111011 13479999


Q ss_pred             EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHH
Q 017569          272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHK  349 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a  349 (369)
                      +.++||++.+|.| |++++++. .. +.+....+|+.         ++.....+++...+++.+...+++++  +..+|+
T Consensus       281 tgT~hKaL~GP~G-G~I~~~~~-l~-~~L~~a~P~i~---------gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na  348 (493)
T PRK13580        281 TTTTHKTLRGPRG-GLVLAKKE-YA-DAVDKGCPLVL---------GGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNA  348 (493)
T ss_pred             EeCChhhccCCCe-EEEEecHH-HH-HHHhhCCCccc---------CCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            9999999988886 77777642 21 22211112222         22222234555556666654555544  999999


Q ss_pred             HHHHHHHHhcCC
Q 017569          350 KLSSFFVIHSSY  361 (369)
Q Consensus       350 ~~l~~~L~~~g~  361 (369)
                      ++|++.|++.||
T Consensus       349 ~~La~~L~~~G~  360 (493)
T PRK13580        349 RALAEGFLKRGA  360 (493)
T ss_pred             HHHHHHHHhcCC
Confidence            999999999997

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.78  E-value=9e-18  Score=160.86  Aligned_cols=253  Identities=17%  Similarity=0.077  Sum_probs=168.8

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.++ ++++.+.+++.+++... ..|. .+...+++    +.+++++|+++     ...++|+|+++++..++.+
T Consensus        22 i~l~~~~~~~~~~~~~~~a~~~~~~~~-~~y~-~~~~~~lr----~~ia~~~~~~~-----~~i~~~~G~~~~l~~~~~~   90 (346)
T TIGR01141        22 IKLNSNENPFGPPPKAKEALRAEADKL-HRYP-DPDPAELK----QALADYYGVDP-----EQILLGNGSDEIIELLIRA   90 (346)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHhHHHh-hcCC-CCCHHHHH----HHHHHHhCcCh-----HHEEEcCCHHHHHHHHHHH
Confidence            445544432 44577888888776432 2332 23334444    44788888765     2488999999999877776


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +.++             +++|++++++|..+...++..|++++.+|++++ +.+|++++++++++++++|+++.++||||
T Consensus        91 l~~~-------------gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~v~l~~p~NptG  156 (346)
T TIGR01141        91 FLEP-------------GDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED-GQLDLEDILVAIDDKPKLVFLCSPNNPTG  156 (346)
T ss_pred             hcCC-------------CCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC-CCCCHHHHHHhcCCCCCEEEEeCCCCCCC
Confidence            6431             478999999998888888999999999999875 88999999999888899999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEeCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKD  294 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~  294 (369)
                      .+.|++++.++|+.+.    .++++++|++|+.+..    .....+. ....-..+..+.+|+++ .+.++|+++.++ +
T Consensus       157 ~~~~~~~~~~l~~~~~----~~~~ii~D~~y~~~~~----~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~  227 (346)
T TIGR01141       157 NLLSRSDIEAVLERTP----EDALVVVDEAYGEFSG----EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA-E  227 (346)
T ss_pred             CCCCHHHHHHHHHhCC----CCcEEEEECchhhhcC----CccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH-H
Confidence            9999999999998752    1899999999985332    1001111 11122344567899984 445689998742 2


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhc
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .. +.+....       ..+.  .     ..+.+.++...+... .+.+.  +..++.+++++.|++.
T Consensus       228 ~~-~~~~~~~-------~~~~--~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       228 II-DALNKVR-------APFN--L-----SRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             HH-HHHHhcc-------CCCC--C-----CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 2221100       0110  1     123344444444332 34444  7788888999999876

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.78  E-value=4.1e-17  Score=163.16  Aligned_cols=200  Identities=12%  Similarity=0.020  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHhcc---CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH-HHHHHHH
Q 017569           70 PECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQKR  145 (369)
Q Consensus        70 ~~v~~~~~~~~~~---n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~~  145 (369)
                      ..+.+.+.++++.   ....|....+..++++++.+++.+..|.+.+.   ..+++|+|+++++.+++.++. ++     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~Ga~~al~~~~~~l~~~~-----  162 (481)
T PTZ00377         91 ADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDP---SDIFLTDGASSGIKLLLQLLIGDP-----  162 (481)
T ss_pred             HHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHHHHHHHhccCC-----
Confidence            3455555555543   23446666789999999999999888876532   458999999999999988875 32     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccC
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (369)
                              ++.|+++.|+|+.+...++..|+.++.+|+++ ++|.+|+++|++++++      ++++|++++|+||||.+
T Consensus       163 --------gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~  234 (481)
T PTZ00377        163 --------SDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV  234 (481)
T ss_pred             --------CCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence                    47899999999999999999999999999975 4579999999999975      78889999999999999


Q ss_pred             CC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-----cccCC---CCcEEEE-cCccC--CCCCCC
Q 017569          219 ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-----DFRLP---LVKSINV-SGHKY--GLVYAG  284 (369)
Q Consensus       219 ~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-----~~~~~---~~Dsi~~-~~hK~--l~~p~g  284 (369)
                      .+   +++|+++|+++      ++|+++|.+|+...+.--.+...+     .+...   ....+++ +.-|.  .+++++
T Consensus       235 ~s~e~~~~i~~~a~~~------~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlR  308 (481)
T PTZ00377        235 LTRDVMEEIIKFCYEK------GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRR  308 (481)
T ss_pred             CCHHHHHHHHHHHHHC------CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCc
Confidence            66   88999999999      999999999987543100010010     11100   1124444 57895  336899


Q ss_pred             eEEEEEe
Q 017569          285 VGWVVWR  291 (369)
Q Consensus       285 ~g~l~~~  291 (369)
                      +|++++.
T Consensus       309 iG~~~~~  315 (481)
T PTZ00377        309 GGYFELT  315 (481)
T ss_pred             eEEEEEe
Confidence            9999873

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.78  E-value=3.4e-18  Score=145.82  Aligned_cols=164  Identities=18%  Similarity=0.054  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-HHHhhhcce
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-KFARYFEVE  177 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~-~~~~~~G~~  177 (369)
                      +++++++++++.+.     ..+++++||++|+.+++.+++..             +.+|+++.+.|.+.. ..+...|++
T Consensus         4 ~~~~~l~~~~~~~~-----~~~~~~~~~t~a~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~g~~   65 (170)
T cd01494           4 ELEEKLARLLQPGN-----DKAVFVPSGTGANEAALLALLGP-------------GDEVIVDANGHGSRYWVAAELAGAK   65 (170)
T ss_pred             HHHHHHHHHcCCCC-----CcEEEeCCcHHHHHHHHHHhCCC-------------CCEEEEeecccceehhhHHHhcCCE
Confidence            56677999996433     34899999999999999987542             368999999998887 788889999


Q ss_pred             eEEEeccCCc-cccCHHHHHHHH-hhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          178 LKEVKLEEGY-YVMNPVKAVELV-DENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       178 v~~v~~~~~~-~~~d~~~L~~~i-~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      ++.++.+.+. ...+.+.+++.. .+++++++++.+++++|...|+++|.++|+++      ++++|+|++|+++..+..
T Consensus        66 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~------~~~li~D~a~~~~~~~~~  139 (170)
T cd01494          66 PVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY------GILLLVDAASAGGASPAP  139 (170)
T ss_pred             EEEeccCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHc------CCEEEEeccccccccccc
Confidence            9999987532 223333555443 46789999999999999999999999999999      999999999998765211


Q ss_pred             CCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       256 ~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                        .  .+....++|.++.++|||+++ +++|++++|
T Consensus       140 --~--~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         140 --G--VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             --c--cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence              1  123345799999999999977 789999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.78  E-value=5.6e-17  Score=157.94  Aligned_cols=215  Identities=9%  Similarity=-0.058  Sum_probs=158.7

Q ss_pred             cCCCCccccccccCCC-hHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      .++..++|+.+.+..+ ++.+.+++.+.+... ...|....+..+|++++.+|+.+..|.+.+.  +..+++|+|+++++
T Consensus        28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~I~it~Gs~~al  105 (388)
T PRK07366         28 AGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDP--ETEVLPLIGSQEGT  105 (388)
T ss_pred             cCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCC--cCeEEECCCcHHHH
Confidence            3444566666555433 567788887776532 3445556788999999999999888865421  11478899999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEe
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      .+++.++.++             ++.|++++|+|+.+...++..|++++.+|+++ +.+.+|++++++.+.+++++|+++
T Consensus       106 ~~~~~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~  172 (388)
T PRK07366        106 AHLPLAVLNP-------------GDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLS  172 (388)
T ss_pred             HHHHHHhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEe
Confidence            9888876542             47899999999999999999999999999974 347889999998888889999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cC-CCCc--EEEEcCccCC-CC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL-PLVK--SINVSGHKYG-LV  281 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~-~~~D--si~~~~hK~l-~~  281 (369)
                      .|+||||.+.+   +++|+++|+++      ++||++|.+|..+...  .......+ .. ..-+  .++.+.-|.+ ..
T Consensus       173 ~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~~~~~--~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~  244 (388)
T PRK07366        173 YPHNPTTAIAPLSFFQEAVAFCQQH------DLVLVHDFPYVDLVFD--GEVEPPSILQADPEKSVSIEFFTLSKSYNMG  244 (388)
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHc------CeEEEEecchhhcccC--CCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence            99999999854   67788899999      9999999999876531  11100111 11 1111  2345688987 47


Q ss_pred             CCCeEEEEE
Q 017569          282 YAGVGWVVW  290 (369)
Q Consensus       282 p~g~g~l~~  290 (369)
                      ...+|+++.
T Consensus       245 GlRiG~~v~  253 (388)
T PRK07366        245 GFRIGFAIG  253 (388)
T ss_pred             chhheehcC
Confidence            788999985

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.78  E-value=3.5e-17  Score=159.15  Aligned_cols=210  Identities=12%  Similarity=0.039  Sum_probs=154.1

Q ss_pred             ccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.+..+ ++.+.+.+.+.+......|....+..++++++++++.+.+|.+.+.   ...++|+|+++|+..++.+
T Consensus        32 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~---~~i~it~G~~~al~~~~~~  108 (384)
T PRK06348         32 IDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKR---NEIMATVGACHGMYLALQS  108 (384)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCh---hhEEEcCChHHHHHHHHHH
Confidence            45555444433 3455544434333344455556677899999999998887776432   3589999999999998888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +..+             ++.|+++.++|..+..+++.+|..++.+|++ ++++.+|+++|++++++++++|+++.|+|||
T Consensus       109 ~~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt  175 (384)
T PRK06348        109 ILDP-------------GDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPT  175 (384)
T ss_pred             hcCC-------------CCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCC
Confidence            7542             4689999999999999999999999889874 3457899999999998889999999999999


Q ss_pred             ccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cccc-CCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       216 G~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |.+.   .+++|.++|+++      ++++++|.+|+.+...  .+..+ ..+. ...-..+..+.-|.++ ...++|+++
T Consensus       176 G~~~s~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v  247 (384)
T PRK06348        176 GAVFSKETLEEIAKIAIEY------DLFIISDEVYDGFSFY--EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI  247 (384)
T ss_pred             CcCCCHHHHHHHHHHHHHC------CeEEEEecccccceeC--CCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence            9985   478899999999      9999999999976531  11001 1111 1111234456789876 678899998


Q ss_pred             Ee
Q 017569          290 WR  291 (369)
Q Consensus       290 ~~  291 (369)
                      ..
T Consensus       248 ~~  249 (384)
T PRK06348        248 AP  249 (384)
T ss_pred             cC
Confidence            74

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.78  E-value=1.3e-17  Score=162.72  Aligned_cols=220  Identities=13%  Similarity=0.057  Sum_probs=155.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...++|+.    +++++|.+.       .+++++|+.|+.+++.++..+             +++|+++.+.|..    
T Consensus        65 p~~~~le~~----lA~l~g~~~-------~i~~~sG~~Al~~~l~~ll~~-------------Gd~Viv~~~~y~~t~~~  120 (403)
T PRK07503         65 PTLALLEQR----MASLEGGEA-------AVALASGMGAITATLWTLLRP-------------GDEVIVDQTLYGCTFAF  120 (403)
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHHHHHcCC-------------CCEEEEccCccchHHHH
Confidence            455566655    899999875       678888999998887765331             4689999887754    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+...|++++.++++      |+++|+++++++|++|++.+|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       121 ~~~~~~~~G~~v~~vd~~------d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~------gi~lIvD~a  188 (403)
T PRK07503        121 LHHGLGEFGVTVRHVDLT------DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGA------GAKVVVDNT  188 (403)
T ss_pred             HHHHHhhCCEEEEEeCCC------CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHc------CCEEEEECC
Confidence            334556779888888763      68999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..   ..  +..   .++|.++.|++||++++.+  .|+++ .+++.. ..+.. ..+.    ..   .|.+  ..
T Consensus       189 ~a~~~~---~~--~l~---~g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~-~~l~~-~~~~----~~---~g~~--~s  248 (403)
T PRK07503        189 YCTPYL---QR--PLE---LGADLVVHSATKYLGGHGDITAGLVV-GGKALA-DRIRL-EGLK----DM---TGAV--MS  248 (403)
T ss_pred             Cccccc---CC--chh---hCCCEEEccccccccCCCceeEEEEE-cCHHHH-HHHHh-hhHH----hC---cCCC--CC
Confidence            975432   11  111   3789999999999987643  67776 444322 12110 0000    00   0111  23


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCcccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      .+.+|..++.+..-..+..+..++|+.++++|++.+.++.-+
T Consensus       249 ~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~  290 (403)
T PRK07503        249 PFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVH  290 (403)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            566677777664332221277799999999999998877543

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=3.7e-17  Score=160.29  Aligned_cols=278  Identities=14%  Similarity=0.065  Sum_probs=172.8

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHh-ccCCCCCCC------CcchHHHHHHHHHHHHHHhCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI-NKNYVDMDE------YPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~-~~n~~~~~~------~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      .++.+.+++..... +..+|+..- -+..+|.+.+++...+ +.....+..      .+...+||+-+.+.+++++|.+.
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~l~~s-en~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~   91 (416)
T PRK13034         14 DEVFAAINKELERQ-QDHLELIAS-ENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY   91 (416)
T ss_pred             HHHHHHHHHHHHHH-hcCeeeccc-ccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc
Confidence            45666655544322 333443221 1234688888888774 443222111      24567777766778999999985


Q ss_pred             CCCCCCCe-EEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch-HHHHHhh--hccee--EEEeccCC
Q 017569          113 ADDKTAVG-VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFARY--FEVEL--KEVKLEEG  186 (369)
Q Consensus       113 ~~~~~~~~-~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s-~~~~~~~--~G~~v--~~v~~~~~  186 (369)
                             . +++++|+.||..++.++..+             +++|+++...|.+ +...++.  .+...  +.++++..
T Consensus        92 -------alv~~~SG~~A~~~~l~al~~~-------------GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (416)
T PRK13034         92 -------ANVQPHSGSQANGAVYLALLKP-------------GDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL  151 (416)
T ss_pred             -------eEEecCCcHHHHHHHHHHhcCC-------------CCEEEEcCccceeeeecCCcceeccceeeeEEcccccc
Confidence                   4 45689999999998887442             5799999999976 3322322  12222  34555544


Q ss_pred             ccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC
Q 017569          187 YYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL  265 (369)
Q Consensus       187 ~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  265 (369)
                      ++.+|+++|++.+.. ++++|++..  +.+|..-|+++|.++|+++      ++++++|+|++.+...  .+...  ...
T Consensus       152 ~~~~d~~~le~~l~~~~~klVi~~~--~~~g~~~dl~~l~~la~~~------g~~livD~Aha~G~~~--~g~~~--~~~  219 (416)
T PRK13034        152 TGLIDYDEVEELAKEHKPKLIIAGF--SAYPRELDFARFREIADEV------GALLMVDMAHIAGLVA--AGEHP--NPF  219 (416)
T ss_pred             cCCcCHHHHHHHHhhcCCeEEEECC--CccccccCHHHHHHHHHHc------CCEEEEeCcccccCcc--cCCCC--CCC
Confidence            578999999999854 677776543  3467888999999999999      9999999999877652  22111  113


Q ss_pred             CCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHH-H-
Q 017569          266 PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPS-F-  343 (369)
Q Consensus       266 ~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~-~-  343 (369)
                      ..+|.++.++|||+.+|.| |+++.+++... ..+ ....|.+       +..+......+++..++...-..+..+ . 
T Consensus       220 ~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~-~~~-~~~~~~~-------~~~~~~~~~~aa~~~al~~~~~~~~~~~~~  289 (416)
T PRK13034        220 PHAHVVTTTTHKTLRGPRG-GMILTNDEEIA-KKI-NSAVFPG-------LQGGPLMHVIAAKAVAFGEALQPEFKTYAK  289 (416)
T ss_pred             CCceEEEEeCcccCCCCCC-eEEEECcHHHH-HHH-HhhcCCc-------ccCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence            4699999999999988887 56665543221 111 1111111       011121222333333444432223333 3 


Q ss_pred             HhhHHHHHHHHHHHhcCC
Q 017569          344 CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       344 ~~~~~a~~l~~~L~~~g~  361 (369)
                      +..+++++|+++|++.|+
T Consensus       290 ~l~~~a~~l~~~L~~~G~  307 (416)
T PRK13034        290 QVIANAQALAEVLKERGY  307 (416)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            999999999999998875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.78  E-value=2.2e-17  Score=160.50  Aligned_cols=219  Identities=13%  Similarity=0.069  Sum_probs=154.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||+.    +++++|.+.       .+++++|+.|+..++.++..+             +++|+++.+.|.....
T Consensus        60 ~pt~~~Le~~----lA~l~G~~~-------al~~~sG~~Ai~~~l~al~~~-------------Gd~Vv~~~~~y~~~~~  115 (386)
T PRK06767         60 NPTVKLFEER----MAVLEGGEE-------ALAFGSGMAAISATLIGFLKA-------------GDHIICSNGLYGCTYG  115 (386)
T ss_pred             CcchHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCcHHHHHH
Confidence            3556666666    899999764       677888899988877776442             4789999988766444


Q ss_pred             HH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      ..    ...|+++..++.      .|+++++++++++|++|++++|+||+|.+.|+++|.++|+++      ++++++|+
T Consensus       116 ~~~~~~~~~gi~~~~~~~------~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~------g~~vivD~  183 (386)
T PRK06767        116 FLEVLEEKFMITHSFCDM------ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRN------GLLVIVDN  183 (386)
T ss_pred             HHHHHHhhcCeEEEEeCC------CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHc------CCEEEEEC
Confidence            33    334665555543      378999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..   ..    .+ ..++|.++.+++|+++++..  .|+++.+++ .+...........+          +.  .
T Consensus       184 a~a~~~~---~~----pl-~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~-~i~~~~~~~~~~~g----------~~--~  242 (386)
T PRK06767        184 TFCSPYL---QR----PL-ELGCDAVVHSATKYIGGHGDVVAGVTICKTR-ALAEKIRPMRKDIG----------GI--M  242 (386)
T ss_pred             CCccccc---CC----ch-hcCCcEEEecCcceecCCCCceeEEEEeChH-HHHHHHHHHHHHhC----------CC--C
Confidence            9974332   11    11 23789999999999977654  477776543 22111100001111          11  1


Q ss_pred             HHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCcccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      ..+.+|..++.+..-.. .+ +..+++++++++|++++.++...
T Consensus       243 ~~~~a~l~~~~L~tl~~-r~~~~~~~a~~la~~L~~~p~v~~v~  285 (386)
T PRK06767        243 APFDAWLLLRGLKTLAV-RMDRHCDNAEKIVSFLKNHDAVEGVW  285 (386)
T ss_pred             CHHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHcCCCccEEE
Confidence            24556776666654333 23 88999999999999999887654

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=8.8e-18  Score=162.59  Aligned_cols=219  Identities=16%  Similarity=0.040  Sum_probs=153.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch-HH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WE-  168 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s-~~-  168 (369)
                      |...+||+.    ++++.|.+.       .+++++|+.++..++ .+..             .+++|+++.+.|.+ +. 
T Consensus        50 p~~~~Le~~----lA~l~g~~~-------~~~~~sG~aai~~~~-~~l~-------------~Gd~Viv~~~~y~~~~~~  104 (377)
T PRK07671         50 PTRAALEEL----IAVLEGGHA-------GFAFGSGMAAITAVM-MLFS-------------SGDHVILTDDVYGGTYRV  104 (377)
T ss_pred             hHHHHHHHH----HHHHhCCCc-------eEEeCCHHHHHHHHH-HHhC-------------CCCEEEECCCccchHHHH
Confidence            344555554    999999874       466777777765443 3322             14689999998874 33 


Q ss_pred             --HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          169 --KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       169 --~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                        ..+..+|++++.++.      .|+++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       105 ~~~~~~~~G~~v~~v~~------~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~------g~~lvvD~a  172 (377)
T PRK07671        105 MTKVLNRFGIEHTFVDT------SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK------GLLTIVDNT  172 (377)
T ss_pred             HHHHHhcCCeEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECC
Confidence              234456888888763      278999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+....   ..  +.   ..++|.++.+++||+++|.+  .|++++++++.. ..+.....+.+.            ...
T Consensus       173 ~~~~~~---~~--p~---~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~-~~~~~~~~~~g~------------~~~  231 (377)
T PRK07671        173 FMTPYW---QS--PI---SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELA-EDLHFVQNSTGG------------ILG  231 (377)
T ss_pred             CCcccc---CC--hh---hhCCeEEEecCcccccCCccceeEEEEeCcHHHH-HHHHHHHHhhcC------------CCC
Confidence            975332   11  11   23789999999999988864  576776654332 221111111111            123


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ....|..++.+..-+.+..+..++|+.++++|++.+.+++-+|
T Consensus       232 ~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~  274 (377)
T PRK07671        232 PQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYY  274 (377)
T ss_pred             HHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEEC
Confidence            5667777776655444322888999999999999987766543

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.78  E-value=5.3e-17  Score=145.86  Aligned_cols=260  Identities=14%  Similarity=0.090  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      ..+.+.+.++++.|...+ .+|....+.+++.+-+...|.....    ..-++..+|+.+.-.++..+..+         
T Consensus        26 snl~~~V~~A~~~~~lgh-~sPe~~qIm~~v~egikyVFkT~n~----~tf~isgsGh~g~E~al~N~leP---------   91 (385)
T KOG2862|consen   26 SNLSGRVQEAMSRPSLGH-MSPEFVQIMDEVLEGIKYVFKTANA----QTFVISGSGHSGWEAALVNLLEP---------   91 (385)
T ss_pred             cCCCHHHHHhhcCCcccc-CCHHHHHHHHHHHHHHHHHhccCCC----ceEEEecCCcchHHHHHHhhcCC---------
Confidence            345556677777776554 5788888999999999999888752    23455556677776666665542         


Q ss_pred             CCCCCCeEEecCCC-c-chHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCC-HHHHH
Q 017569          150 KPYDKPNIVTGANV-Q-VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED-VKLLH  225 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~-h-~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~-l~~I~  225 (369)
                          +++|++-... | ..+...++.+|++|..|+.+.. ....++.+++++.+ ++++|+++++.+.||...| ++.+.
T Consensus        92 ----gd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G-~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g  166 (385)
T KOG2862|consen   92 ----GDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIG-QAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG  166 (385)
T ss_pred             ----CCeEEEEEechHHHHHHHHHHhhCceeeEEecCcc-cCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHH
Confidence                3555543333 2 2355677889999999988764 68899999999987 6799999999999999998 77888


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc--------c
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL--------P  297 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~--------~  297 (369)
                      ++|++|      +.+++||++.+.+..+|       .++.-++|..-..++|.+++|.|.+.++++++...        +
T Consensus       167 ~lc~k~------~~lllVD~VaSlggt~F-------~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~  233 (385)
T KOG2862|consen  167 ELCHKH------EALLLVDTVASLGGTEF-------EMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKP  233 (385)
T ss_pred             HHhhcC------CeEEEEechhhcCCccc-------eehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCc
Confidence            999999      99999999877655543       33344889988899999999999999887665221        0


Q ss_pred             cccccccC----ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          298 DELVFHIN----YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 ~~~~~~~~----y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..++++..    |.+-+..--....|.+.....++-++|..+-+||+.+.  |+.+++++|+..|+++|+
T Consensus       234 ~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GL  303 (385)
T KOG2862|consen  234 VSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGL  303 (385)
T ss_pred             eEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            11222221    11111100112357777778899999999999999999  999999999999999775

>PRK05939 hypothetical protein; Provisional

Probab=99.78  E-value=2.9e-17  Score=159.77  Aligned_cols=233  Identities=15%  Similarity=-0.024  Sum_probs=157.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---H
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---W  167 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s---~  167 (369)
                      |...+||++    ++++.|.+.       .+.+++|+.|+..++.++.++             +++|++++..|.+   +
T Consensus        47 p~~~~lE~~----la~leg~~~-------~v~~ssG~~Ai~~~l~all~~-------------Gd~Vv~~~~~y~~t~~~  102 (397)
T PRK05939         47 PTTAALEAK----ITKMEGGVG-------TVCFATGMAAIAAVFLTLLRA-------------GDHLVSSQFLFGNTNSL  102 (397)
T ss_pred             HHHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHHHHcCC-------------CCEEEECCCccccHHHH
Confidence            556677766    888999875       577777899998888776442             4689999887654   3


Q ss_pred             HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccc
Q 017569          168 EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (369)
Q Consensus       168 ~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~  247 (369)
                      ...+...|++++.+++.      |+++|+++++++|++|++++++||+|.+.|+++|+++|+++      ++++++|+++
T Consensus       103 ~~~l~~~G~~v~~v~~~------d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~------gi~livD~t~  170 (397)
T PRK05939        103 FGTLRGLGVEVTMVDAT------DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRER------GLLYVVDNTM  170 (397)
T ss_pred             HHHHHhcCCEEEEECCC------CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHc------CCEEEEECCc
Confidence            34566779999888753      78999999999999999999999999999999999999999      9999999998


Q ss_pred             ccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCccccc-ccccCccCCCCCCc--------ccc
Q 017569          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLPDEL-VFHINYLGSDQPTF--------TLN  317 (369)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~-~~~~~y~~~~~~~~--------~l~  317 (369)
                      +.+..  +.+      ...++|.+..+++||++++.. .|.+++.+........ .....|.......+        .+.
T Consensus       171 a~~~~--~~~------~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
T PRK05939        171 TSPWL--FRP------KDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLR  242 (397)
T ss_pred             ccccc--cCc------cccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHH
Confidence            75432  111      123799999999999987533 3444443221100000 00000100000000        000


Q ss_pred             CCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          318 FSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       318 ~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ..-....+...|..++.+..-..+-.++.++|..++++|++++.+++-+|
T Consensus       243 ~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~y  292 (397)
T PRK05939        243 DMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYY  292 (397)
T ss_pred             hcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence            01112235666766665544444433888899999999999998877654

>PRK09265 aminotransferase AlaT; Validated

Probab=99.78  E-value=6.2e-17  Score=158.44  Aligned_cols=210  Identities=13%  Similarity=0.042  Sum_probs=151.0

Q ss_pred             CCCCccccccccC----CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHh--CCCCCCCCCCCeEEeCCch
Q 017569           54 GNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        54 ~~p~~~l~~~~~~----~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~--g~~~~~~~~~~~~~t~Ggt  127 (369)
                      ++..++|..+.|.    ++++.+.+.+.+.+.. ...|....+..++++++.+++.+..  ++++     ..+++|+|++
T Consensus        32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-----~~i~~t~G~~  105 (404)
T PRK09265         32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQYYQQKGIPDVDV-----DDIYIGNGVS  105 (404)
T ss_pred             CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHhccCCCCCCc-----ccEEEeCChH
Confidence            3344555555442    2345566666655543 3445555577888888777776432  3443     3488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEE
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (369)
                      +++.+++.++..+             ++.|++++++|..+..+++..|+.++.++++. +++.+|+++|++++++++++|
T Consensus       106 ~~l~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v  172 (404)
T PRK09265        106 ELIVMAMQALLNN-------------GDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAI  172 (404)
T ss_pred             HHHHHHHHHhCCC-------------CCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEE
Confidence            9998888776432             46899999999999999999999988888864 357899999999998889999


Q ss_pred             EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEEc-CccCC-
Q 017569          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVS-GHKYG-  279 (369)
Q Consensus       207 ~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~~-~hK~l-  279 (369)
                      ++++|+||||.+.+   +++|+++|+++      ++++++|.+|+.+...  ... ...+.  ......+++. .-|.+ 
T Consensus       173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~-~~~~~~~~~~~~vi~~~S~SK~~~  243 (404)
T PRK09265        173 VIINPNNPTGAVYSKELLEEIVEIARQH------NLIIFADEIYDKILYD--GAV-HISIASLAPDLLCVTFNGLSKAYR  243 (404)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEehhhhhccCC--CCC-cCCHHHcCCCceEEEEecchhhcc
Confidence            99999999999977   88999999999      9999999999865431  111 01111  1223345544 57877 


Q ss_pred             CCCCCeEEEEEe
Q 017569          280 LVYAGVGWVVWR  291 (369)
Q Consensus       280 ~~p~g~g~l~~~  291 (369)
                      ......|++++.
T Consensus       244 ~pGlRiG~~v~~  255 (404)
T PRK09265        244 VAGFRVGWMVLS  255 (404)
T ss_pred             CcccceEEEEEe
Confidence            566788999874

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.78  E-value=7.9e-18  Score=161.91  Aligned_cols=259  Identities=14%  Similarity=0.016  Sum_probs=175.3

Q ss_pred             ccCCChHHHHHHHHHHhc----cCCCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe-CCchHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASIN----KNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLAGL  135 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~----~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~al~  135 (369)
                      .|...++.+.+++...+.    ...+.+.   .++...++-+++++.+++++|.+.+    ...+++ .+|+.++-.+++
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~----~~v~~~~gsgt~~~Ea~~~   85 (360)
T PRK05355         10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN----YKVLFLQGGASLQFAMVPM   85 (360)
T ss_pred             CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEEcCCchHHHHHHHH
Confidence            344556788888877652    1122222   2345568888999999999998431    234555 566666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHH-HHhhcCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~-~i~~~~~~v~~~~~~~~  214 (369)
                      .+..+        |  .+...|+....+| .+.+.++.+|.. ..++.+...+..+..++++ ++++++++|.+++..|.
T Consensus        86 nl~~~--------g--~~~l~i~~G~fg~-r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTs  153 (360)
T PRK05355         86 NLLGG--------G--KKADYVDTGSWSK-KAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETI  153 (360)
T ss_pred             hcCCC--------C--CeEEEEECCHHHH-HHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCc
Confidence            65432        1  0111233333344 346777888865 6666654224555555555 78888999999999999


Q ss_pred             cccCC-CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          215 TGEFE-DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       215 tG~~~-~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ||... |+++|      +      +++++||++++.+..|       ++++  ..|.+++++||++ +|+|.|+++++++
T Consensus       154 tGv~~~~i~~i------~------g~l~vVDavss~g~~~-------idv~--~~d~~~~ssqK~l-gP~Glg~l~~s~~  211 (360)
T PRK05355        154 DGTEFHELPDT------G------DVPLVADMSSDILSRP-------IDVS--KFGLIYAGAQKNI-GPAGLTIVIVRED  211 (360)
T ss_pred             ceEecCccccc------C------CCcEEEEcCccccCcc-------CCHH--HccEEEEeccccc-cCCceEEEEECHH
Confidence            99997 77776      7      9999999999876652       3433  4579999999998 5999999999875


Q ss_pred             CCccccccc-ccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          294 DDLPDELVF-HINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       294 ~~~~~~~~~-~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .+-  .+.. ...|....  .......+|.+...+.++..+|+.+..+ |++.+  |+.+++++++++|+++|++
T Consensus       212 ~l~--~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~  284 (360)
T PRK05355        212 LLG--RALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFY  284 (360)
T ss_pred             HHh--hcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            321  1111 01111100  0111234899999999999999999888 89999  9999999999999999965

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.78  E-value=1.3e-16  Score=155.93  Aligned_cols=210  Identities=17%  Similarity=0.119  Sum_probs=155.7

Q ss_pred             ccccccccC-----CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           58 LNLASFVTT-----WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        58 ~~l~~~~~~-----~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++|+.+.|.     ++++.+.+++.++++.. ...|...++..++++++.+++.+. |.+.+   ...+++|+|+++++.
T Consensus        34 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~---~~~i~~t~G~~~al~  109 (401)
T TIGR01264        34 IKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIE---ADDVVLCSGCSHAIE  109 (401)
T ss_pred             eecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCC---HHHEEECcChHHHHH
Confidence            567666653     34567888888777654 234555678888998888877763 43321   134889999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEee
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      +++.++.++             ++.|+++.++|..+...++..|++++.++++. +++.+|+++|++++++++++|++++
T Consensus       110 ~~~~~l~~~-------------gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~  176 (401)
T TIGR01264       110 MCIAALANA-------------GQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNN  176 (401)
T ss_pred             HHHHHhCCC-------------CCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcC
Confidence            988877542             46899999999999999999999999998864 3589999999999988899999999


Q ss_pred             CCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcE-EEEcCccC-CCCCCC
Q 017569          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKS-INVSGHKY-GLVYAG  284 (369)
Q Consensus       211 ~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Ds-i~~~~hK~-l~~p~g  284 (369)
                      |+||||.+.   ++++|+++|+++      ++++++|++|..+...  ......... ...... ++-+.-|. +....+
T Consensus       177 p~NPtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlR  248 (401)
T TIGR01264       177 PSNPCGSVFSRQHLEEILAVAERQ------CLPIIADEIYGDMVFS--GATFEPLASLSSTVPILSCGGLAKRWLVPGWR  248 (401)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEhhhhhhccC--CcccccHHHcCCCCcEEEEccCcccCCCccce
Confidence            999999985   588899999999      9999999999875431  100010011 111123 34457884 777889


Q ss_pred             eEEEEEeC
Q 017569          285 VGWVVWRT  292 (369)
Q Consensus       285 ~g~l~~~~  292 (369)
                      +|++++.+
T Consensus       249 iG~iv~~~  256 (401)
T TIGR01264       249 LGWIIIHD  256 (401)
T ss_pred             EEEEEecC
Confidence            99999864

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.77  E-value=1.5e-17  Score=161.25  Aligned_cols=217  Identities=16%  Similarity=0.074  Sum_probs=154.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...++|+.    +++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|..    
T Consensus        54 p~~~~le~~----la~l~g~~~-------~~~~~sG~~Ai~~al~al~~~-------------Gd~Vl~~~~~~~~t~~~  109 (380)
T TIGR01325        54 PTVAAFEER----IAALEGAER-------AVATATGMSAIQAALMTLLQA-------------GDHVVASRSLFGSTVGF  109 (380)
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEecCCcchHHHH
Confidence            345555555    889999864       688999999999988776442             4678888877754    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+..+|++++.++.+      |++++++++++++++|++..|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       110 ~~~~~~~~g~~v~~v~~~------d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~------gi~livD~a  177 (380)
T TIGR01325       110 ISEILPRFGIEVSFVDPT------DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAI------GALLVVDNV  177 (380)
T ss_pred             HHHHHHHhCCEEEEECCC------CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHc------CCEEEEECC
Confidence            444567789998888754      68999999998999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCC-Ce-EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GV-GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~-g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..  ..|   .   ..++|.++.|++|+++++. .. |+++.+ ++.. +.+..   +..    ..   |..  ..
T Consensus       178 ~~~~~~--~~p---l---~~g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~-~~l~~---~~~----~~---g~~--~~  235 (380)
T TIGR01325       178 FATPVL--QQP---L---KLGADVVVYSATKHIDGQGRVMGGVIAGS-EELM-AEVAV---YLR----HT---GPA--MS  235 (380)
T ss_pred             Cccccc--CCc---h---hhCCCEEEeeccceecCCCCeEEEEEEeC-HHHH-HHHHH---HHH----hh---CCC--CC
Confidence            975432  111   1   2278999999999998764 33 555543 3322 12111   100    00   111  12


Q ss_pred             HHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCcccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      ...+|..++.+..-..+ + +..++|+++++.|++++.+++-+
T Consensus       236 p~~a~~~l~~l~tl~~r-~~~~~~~a~~la~~L~~~p~v~~V~  277 (380)
T TIGR01325       236 PFNAWVLLKGLETLSLR-MQKQFDSALAIAEWLQAQPQVQAVY  277 (380)
T ss_pred             HHHHHHHHhccCcHHHH-HHHHHHHHHHHHHHHHcCCCccEEE
Confidence            34556666655443332 3 88999999999999999776544

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=4.6e-17  Score=159.74  Aligned_cols=232  Identities=14%  Similarity=0.007  Sum_probs=158.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-  169 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-  169 (369)
                      |....||+.    ++++.|.+.       .+++++|+.|+..++.++..+             ++.|+++...|..... 
T Consensus        69 p~~~~Le~~----lA~l~g~~~-------av~~sSG~aAi~~al~all~~-------------Gd~Vv~~~~~y~~t~~~  124 (436)
T PRK07812         69 PTQDVVEQR----IAALEGGVA-------ALLLASGQAAETFAILNLAGA-------------GDHIVSSPRLYGGTYNL  124 (436)
T ss_pred             chHHHHHHH----HHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEeCCcchHHHHH
Confidence            455566655    899999875       788999999998888776442             4688888877766443 


Q ss_pred             ---HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          170 ---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       170 ---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                         .+...|++++.++ +.    .|+++++++++++|++|++.+++||+|.+.|+++|+++|+++      +++++||++
T Consensus       125 ~~~~l~~~Gi~v~~vd-d~----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~------gi~liVD~t  193 (436)
T PRK07812        125 FHYTLPKLGIEVSFVE-DP----DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEA------GVPLIVDNT  193 (436)
T ss_pred             HHHHhhcCeEEEEEEC-CC----CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECC
Confidence               3444688777775 32    289999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCc-ccc----c-ccccCccCC---C--CCC-
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDL-PDE----L-VFHINYLGS---D--QPT-  313 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~-~~~----~-~~~~~y~~~---~--~~~-  313 (369)
                      ++.+..  ..+     + ..++|.++.|+|||++++.+ .|.+++.+.... ...    + ..+++|...   .  ... 
T Consensus       194 ~a~~~~--~~p-----l-~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (436)
T PRK07812        194 IATPYL--IRP-----L-EHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAY  265 (436)
T ss_pred             Cccccc--CCc-----h-hcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHH
Confidence            875433  111     1 24899999999999976533 455555433210 000    0 001111110   0  000 


Q ss_pred             --------ccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 --------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 --------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                              ...-|.+  ..+...|..++.+..-+.+-.+..++|..++++|++++.+++-+|
T Consensus       266 ~~~~~~~~~~~~G~~--l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~y  325 (436)
T PRK07812        266 ALKARVQLLRDLGSA--ISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNY  325 (436)
T ss_pred             HHHHHHHHHHhcCCC--CCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence                    0001211  234666766666654444422999999999999999998887654

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.77  E-value=1.1e-16  Score=168.97  Aligned_cols=308  Identities=11%  Similarity=0.036  Sum_probs=193.9

Q ss_pred             ccccccccc-hhHhhhCC-CCCCCCCCCCHHHHHHHHHHhhhhcCCCCcccc-ccccCCChHHHHHHHHH---Hhcc-CC
Q 017569           12 EILSSTFAS-RYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA-SFVTTWMEPECDKLVMA---SINK-NY   84 (369)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~-~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~-~~~~~~~~~~v~~~~~~---~~~~-n~   84 (369)
                      ++|+++|.. .|-.-++. ...+|+ +.++.++++.++++-..+...+.-++ +|-++..|+.+.+-+.+   .+.. .+
T Consensus        32 ~s~~~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytP  110 (954)
T PRK05367         32 DSLDALIDQAVPASIRLAEPLDLPA-ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPAWYTAYTP  110 (954)
T ss_pred             CCHHHHhhhhCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcchhhccCC
Confidence            456677766 44322222 234553 57999999999988765543221112 23334445555343332   1221 34


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      .+++.++|.-+...+.+.++++++|++.     .+..+..++|.+...++++.+..          +.++++|++++..|
T Consensus       111 yQ~EisQG~Leal~~~Qt~la~LtG~~~-----anaSl~d~aTAa~ea~~~a~~~~----------~~~~~~vlv~~~~h  175 (954)
T PRK05367        111 YQPEISQGRLEALLNFQTMVADLTGLEI-----ANASLLDEATAAAEAMALAKRVS----------KSKSNRFFVDDDVH  175 (954)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHCCCh-----hhccccccHHHHHHHHHHhhhhc----------cCCCCEEEEcCccC
Confidence            5555567777777889999999999997     34677888888776555554321          11136899999999


Q ss_pred             chHHHH----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          165 VCWEKF----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       165 ~s~~~~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      ++....    ++..|++++.+|.+.+   ++        ++++..+++.+| +.+|.+.|+++|+++||++      |++
T Consensus       176 P~~~~v~~t~a~~~G~ev~~~~~~~d---~~--------~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~------Gal  237 (954)
T PRK05367        176 PQTLDVLRTRAEPLGIEVVVGDAAKA---LD--------HDDVFGVLLQYP-GTSGEVRDYTALIAAAHAR------GAL  237 (954)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCccC---CC--------cccEEEEEEecC-CCCeeeccHHHHHHHHHHc------CCE
Confidence            986654    4567999999987542   11        235556666665 6679999999999999999      999


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCC----CCCCCeEEEEEeCC--CCccccccc-ccCccCCC---
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG----LVYAGVGWVVWRTK--DDLPDELVF-HINYLGSD---  310 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l----~~p~g~g~l~~~~~--~~~~~~~~~-~~~y~~~~---  310 (369)
                      ++||+.+.....  +.     +....++|.++.++|||+    ++++++|++++|++  +.++..+.. ..+..+..   
T Consensus       238 ~~vda~~~Al~~--l~-----~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~  310 (954)
T PRK05367        238 VAVAADLLALTL--LT-----PPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALR  310 (954)
T ss_pred             EEEEehhhhccC--CC-----ChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccc
Confidence            999996633322  11     112458999999999994    22335999999864  112111110 00000100   


Q ss_pred             ------CCCcc-ccC-----CcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          311 ------QPTFT-LNF-----SKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       311 ------~~~~~-l~~-----tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                            ++... ..+     |-.+..++..++++.++|.+|++++  ++..+|+|++++|++.|
T Consensus       311 lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G  374 (954)
T PRK05367        311 LALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALG  374 (954)
T ss_pred             cccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence                  00000 012     3333334445555678999999998  89999999999998765

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.77  E-value=6.3e-17  Score=159.01  Aligned_cols=228  Identities=9%  Similarity=-0.013  Sum_probs=158.5

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---  167 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~---  167 (369)
                      |...+||+.    ++++.|.+.       .+++++|+.|+.+++.++..+             +++|+++.+.|...   
T Consensus        63 p~~~~le~~----lA~l~g~~~-------al~~~SG~~Ai~~al~all~p-------------Gd~VIv~~~~y~~t~~~  118 (427)
T PRK05994         63 PTNAVLEER----VAALEGGTA-------ALAVASGHAAQFLVFHTLLQP-------------GDEFIAARKLYGGSINQ  118 (427)
T ss_pred             ccHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHHHHHhCC-------------CCEEEEecCcchhHHHH
Confidence            445555555    899999875       788999999999888887542             47899999888753   


Q ss_pred             -HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          168 -EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       168 -~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                       ...+...|+.++.++.+      |+++++++++++|++|++++++||+|.+.|+++|+++|+++      ++++++|++
T Consensus       119 ~~~~~~~~G~~v~~vd~~------d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~------gi~livD~a  186 (427)
T PRK05994        119 FGHAFKSFGWQVRWADAD------DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRA------GLPLIVDNT  186 (427)
T ss_pred             HHHHHHhcCcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECC
Confidence             34456779888888753      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCccccccccc--CccCCCC---------CC-
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLPDELVFHI--NYLGSDQ---------PT-  313 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~--~y~~~~~---------~~-  313 (369)
                      ++.+..   ..  +.   ..++|.++.|+|||++++.+ .|.+++......   +....  .++....         .+ 
T Consensus       187 ~a~~~~---~~--pl---~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~---~~~~k~~~~~~~~~~~~~~~~~~~~~  255 (427)
T PRK05994        187 LASPYL---IR--PI---EHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFD---WSKSGKYPMLSEPRPEYHGLVLHETF  255 (427)
T ss_pred             cccccc---CC--cc---ccCCcEEEEcCccccCCCCCcEEEEEEeCCccc---cccccccccccCCcchhhhhhHHHHh
Confidence            975432   11  11   24899999999999987664 355555322110   00000  0010000         00 


Q ss_pred             -------------ccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 -------------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 -------------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                                   ....|.  ......+|..++.+..-..+-.+..++|.++++.|++++.+++-+|
T Consensus       256 ~~~~~~~~~~~~~~~~~G~--~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~y  320 (427)
T PRK05994        256 GNFAFAIAARVLGLRDLGP--AISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNY  320 (427)
T ss_pred             hhhhhHHHHHHHHHHhcCC--CCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence                         000011  1235566666665544333322899999999999999998876544

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.77  E-value=7.8e-17  Score=157.64  Aligned_cols=268  Identities=12%  Similarity=0.018  Sum_probs=178.3

Q ss_pred             CCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           55 NPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        55 ~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      +..+++..+.|..+ ++.+.+.+.++++.....|....+..++++++.+++++.+|.+.+.   ..+++|+|+++|+..+
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~---~~i~~t~G~~~al~~~  109 (402)
T PRK06107         33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD---NEITVGGGAKQAIFLA  109 (402)
T ss_pred             CCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHHHHH
Confidence            33356666556543 4667888888776555556666688999999999999998986422   3589999999999988


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      +.++..+             ++.|++++++|..+...+...|..++.+++++ +++.+|+++|++++.+++++|++++|+
T Consensus       110 ~~~~~~~-------------gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~  176 (402)
T PRK06107        110 LMATLEA-------------GDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPS  176 (402)
T ss_pred             HHHhcCC-------------CCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCC
Confidence            8765332             47899999999888888888888888888863 457899999999998889999999999


Q ss_pred             CCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC-C--CCcEEEE-cCccCCC-CCCC
Q 017569          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-P--LVKSINV-SGHKYGL-VYAG  284 (369)
Q Consensus       213 ~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~--~~Dsi~~-~~hK~l~-~p~g  284 (369)
                      ||||.+.+   +++|+++|++++     ++++++|.+|+....  -.+........ .  .-..+++ +.+|.++ ...+
T Consensus       177 NPtG~~~s~~~~~~l~~~a~~~~-----~~~iI~De~y~~l~~--~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR  249 (402)
T PRK06107        177 NPTGAVYSRAELRALADVLLRHP-----HVLVLTDDIYDHIRF--DDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWR  249 (402)
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcC-----CeEEEEehhcccccc--CCCCCCCHHHhCcCccCCEEEEeccchhhcCcccc
Confidence            99998864   677778888841     799999999986432  11111111111 1  1234444 4689985 5567


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +|+++..+ +.. ..+.....+..         .   +...+.++++...+  +..-+++.  +..++.+.+.+.|++.
T Consensus       250 iG~~~~~~-~~~-~~~~~~~~~~~---------~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  314 (402)
T PRK06107        250 IGYAAGPA-DLI-AAINKLQSQSS---------S---CPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI  314 (402)
T ss_pred             eeeeecCH-HHH-HHHHHHHHhcc---------c---CCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            89987632 222 22111011000         0   11234444555555  22223333  5667777788888765

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.76  E-value=5.2e-17  Score=156.35  Aligned_cols=255  Identities=10%  Similarity=0.032  Sum_probs=165.9

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      +.++|....+. ++++.+.+++.+.+.... .|. .++..    ++++.+++++|++++     .+++|+|+++++..++
T Consensus        21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~-~y~-~~~~~----~lr~~ia~~~~~~~~-----~i~it~Ga~~~l~~~~   89 (356)
T PRK08056         21 QLLDFSANINPLGMPVSLKRAIIDNLDCAE-RYP-DVEYR----HLHQALARHHQVPAS-----WILAGNGETESIFAVV   89 (356)
T ss_pred             hEEEeccccCCCCCCHHHHHHHHHHHHhcc-cCc-CccHH----HHHHHHHHHhCcChh-----hEEECCCHHHHHHHHH
Confidence            33445444343 445677888776654322 222 22344    455557778888762     4899999999998877


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      .++ ..             + .+++..|++..+...++..|++++.+|+++ +++.+| +++++.+.+++++|++++|+|
T Consensus        90 ~~l-~~-------------g-~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~N  153 (356)
T PRK08056         90 SGL-KP-------------R-RAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNN  153 (356)
T ss_pred             HHh-CC-------------C-CEEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcC
Confidence            764 21             2 467778889889999999999999999864 346777 456666778899999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |||.+.+   +++|+++|+++      ++++++|++|..+...  .......+....-..++.|.+|+++ ....+|+++
T Consensus       154 PTG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v  225 (356)
T PRK08056        154 PTGLLPERQLLQAIAERCKSL------NIALILDEAFIDFIPD--ETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLV  225 (356)
T ss_pred             CCCCCCCHHHHHHHHHHHHhc------CCEEEEecchhccCCc--chHHHHHhccCCCEEEEEechhhccCcchhheeee
Confidence            9999977   88899999999      9999999999765421  0000011111224566788999988 678899998


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+.+.+ ..+..   +..    .    .+   ...+.+.++...+.... .+++  +..+..+++.+.|++++
T Consensus       226 ~~~~~~~-~~l~~---~~~----~----~~---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~  284 (356)
T PRK08056        226 NSDDAAV-ARMRR---QQM----P----WS---INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALP  284 (356)
T ss_pred             cCCHHHH-HHHHH---hCC----C----Cc---hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7543322 22211   000    0    01   12344445444553223 3333  56788888999998764

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.76  E-value=1.2e-16  Score=153.64  Aligned_cols=250  Identities=15%  Similarity=0.051  Sum_probs=165.8

Q ss_pred             ccccccC-CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           60 LASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        60 l~~~~~~-~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      |..+.+. ++++.+.+++.+++... ...|. .+...+++++    +++++++++     ..+++|+|+++++..++.++
T Consensus        27 l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~----ia~~~~~~~-----~~i~it~G~~~~l~~~~~~l   96 (351)
T PRK14807         27 MDANETPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREE----LARYCSVVP-----TNIFVGNGSDEIIHLIMLAF   96 (351)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHH----HHHHhCCCc-----ccEEEecCHHHHHHHHHHHh
Confidence            3333443 34567788887776532 22222 2344555555    677778775     24899999999998888776


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTG  216 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG  216 (369)
                      .++             +++|+++.++|..+...++..|++++.++++++ +.+|++++++++++ ++++|++++|+||||
T Consensus        97 ~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG  162 (351)
T PRK14807         97 INK-------------GDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED-YTYDVGSFIKVIEKYQPKLVFLCNPNNPTG  162 (351)
T ss_pred             cCC-------------CCEEEEeCCChHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCC
Confidence            442             478999999999998889999999999998764 88999999999975 899999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDD  295 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~  295 (369)
                      .+.+.+++.++|+++      +.++++|++|+.+.    ............--.+.-+..|.++ .+.++|+++.. ++.
T Consensus       163 ~~~~~~~l~~l~~~~------~~~~ivDe~y~~~~----~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~-~~~  231 (351)
T PRK14807        163 SVIEREDIIKIIEKS------RGIVVVDEAYFEFY----GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVAN-ENI  231 (351)
T ss_pred             CCCCHHHHHHHHHhC------CCEEEEeCcchhhc----ccchHHHhhhCCCEEEEecchHhcccchhceeeeecC-HHH
Confidence            999999999999988      88899999997532    1111111111111234455779885 67889999853 222


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      . ..+...    ..   .+    .   ...+.+.++...+....+++.  +..+..+++.+.|++.
T Consensus       232 ~-~~~~~~----~~---~~----~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~  282 (351)
T PRK14807        232 L-KYLNLV----KS---PY----N---INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI  282 (351)
T ss_pred             H-HHHHHc----cC---CC----C---cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2 222110    00   00    0   113444455555543334444  4556666777777664

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.76  E-value=8.5e-17  Score=156.97  Aligned_cols=217  Identities=14%  Similarity=0.063  Sum_probs=157.0

Q ss_pred             ccccccccCC-ChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           58 LNLASFVTTW-MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ++|+.+.|.. +++.+.+++..+++..   ...|....+..++++.+.+++.+.++...+   ....++|+|+++++..+
T Consensus        36 ~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~i~~t~G~~~al~~~  112 (394)
T PRK06836         36 FDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT---ADHIVMTCGAAGALNVA  112 (394)
T ss_pred             EEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC---cCcEEEeCChHHHHHHH
Confidence            4555555543 3567888887776532   344445568888999988888887665432   13489999999999888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +.++..+             ++.|++++++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++++|
T Consensus       113 ~~~l~~~-------------gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~N  179 (394)
T PRK06836        113 LKAILNP-------------GDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNN  179 (394)
T ss_pred             HHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCC
Confidence            8876432             468999999999999999999999999999876689999999999999999999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |||.+.|   +++|+++|++..++++.++++++|.+|..+...  ............-..+..+..|.++ .+.++|+++
T Consensus       180 PtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~  257 (394)
T PRK06836        180 PTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYD--GAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIA  257 (394)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccC--CCCCCChHHccCcEEEEecchhhccCcceeeEEEe
Confidence            9999866   667777788821112229999999999875431  1011111111112355566889876 556889998


Q ss_pred             EeC
Q 017569          290 WRT  292 (369)
Q Consensus       290 ~~~  292 (369)
                      ..+
T Consensus       258 ~~~  260 (394)
T PRK06836        258 VNP  260 (394)
T ss_pred             cCH
Confidence            753

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.76  E-value=6.9e-17  Score=156.30  Aligned_cols=189  Identities=12%  Similarity=0.085  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (369)
                      +...+++.+++..++.. ...+    +.+++.+++++++|.+.       .++|+||++|+.+++.++ ..         
T Consensus        11 ~~e~~a~~~~~~~~~~~-~~g~----~~~~~e~~la~~~g~~~-------~v~~~sgt~aL~~~l~al~~~---------   69 (376)
T TIGR02379        11 GQELEYIAEAISEGKLS-GDGP----FSRRCETWLENRTGTKK-------ALLTPSCTAALEMAALLLDIQ---------   69 (376)
T ss_pred             HHHHHHHHHHHHcCCcc-CCcH----HHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence            44567777777665432 1223    33445556888888864       899999999998887765 22         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                          .+++|+++.++|.++..++...|++++.++++++++.+|+++++++++++|++|+   +++++|...|+++|.++|
T Consensus        70 ----pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la  142 (376)
T TIGR02379        70 ----PGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALA  142 (376)
T ss_pred             ----CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHH
Confidence                2479999999999999999999999999999977689999999999999998886   667889999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      +++      ++++++|+|++.+..  .... +.. ....+.++++...|.+.+....|++++.+++..
T Consensus       143 ~~~------~i~vIeDaa~~~g~~--~~~~-~~g-~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~  200 (376)
T TIGR02379       143 NKH------QLFVIEDAAQGVMST--YKGR-ALG-SIGHLGTFSFHETKNYTSGGEGGALLINDQAFI  200 (376)
T ss_pred             HHC------CCEEEEECccccCCc--cCCc-ccC-CCCCEEEEeCCCCCcCcccCCceEEEECCHHHH
Confidence            999      999999999986542  1111 100 011233444444454544323577777765443

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.76  E-value=1.1e-16  Score=157.10  Aligned_cols=233  Identities=16%  Similarity=0.069  Sum_probs=154.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |...+||++    ++++.|.+.       .+++++|++|+..++.++..+             +++|+++.+.|......
T Consensus        58 pt~~~Le~~----lA~l~g~~~-------~l~~ssG~~Ai~~al~al~~~-------------Gd~Vl~~~~~Y~~t~~~  113 (425)
T PRK06084         58 PTNDVLEQR----VAALEGGVG-------ALAVASGMAAITYAIQTIAEA-------------GDNIVSVAKLYGGTYNL  113 (425)
T ss_pred             chHHHHHHH----HHHHhCCCc-------eeEehhHHHHHHHHHHHHhCC-------------CCEEEEeCCCcchHHHH
Confidence            455566655    888888764       678899999999998887542             46888888877643333


Q ss_pred             H----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +    ...|+++.+++.      .|+++|++++++++++|++++|+||+|.+.|+++|.++|+++      ++++++|++
T Consensus       114 ~~~~l~~~gi~v~~~d~------~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~------~i~vVvD~a  181 (425)
T PRK06084        114 LAHTLPRIGIETRFAAH------DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRH------GVPLIVDNT  181 (425)
T ss_pred             HHHhcccceeEEEEECC------CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHc------CCEEEEECC
Confidence            3    234666665543      378999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCcccc-------cc-cccCccCCC-CCCc--
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLPDE-------LV-FHINYLGSD-QPTF--  314 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~~~~-------~~-~~~~y~~~~-~~~~--  314 (369)
                      ++.+..  ..|   .   ..++|.++.|++||++++.. .|.+++.+.......       +. .++.|.+-. ..+.  
T Consensus       182 ~a~~~~--~~p---~---~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  253 (425)
T PRK06084        182 VATPVL--CRP---F---EHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGP  253 (425)
T ss_pred             Cccccc--CCh---h---hcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcch
Confidence            985432  111   1   23799999999999987643 344444322110000       00 011121100 0000  


Q ss_pred             ----------cccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          315 ----------TLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       315 ----------~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                                ...+.-.......+|..++.+..-..+-.++.++|..+++.|++.+.+++-+|
T Consensus       254 ~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y  316 (425)
T PRK06084        254 AAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKY  316 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence                      00011112235667766666654333322999999999999999998876544

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.76  E-value=2.3e-17  Score=158.83  Aligned_cols=220  Identities=16%  Similarity=0.064  Sum_probs=153.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||++    ++++.|.+.       +++++||++|+.+++. +..+             +++|+++.+.|.....
T Consensus        53 ~p~~~~le~~----lA~leg~~~-------~v~~~sG~aAi~~~l~-~l~~-------------GD~VI~~~~~yg~~~~  107 (364)
T PRK07269         53 NPTRAKLEET----LAAIESADY-------ALATSSGMSAIVLAFS-VFPV-------------GSKVVAVRDLYGGSFR  107 (364)
T ss_pred             CccHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHH-HhCC-------------CCEEEEecCCcCchHH
Confidence            4567777777    788888764       8999999999988874 3221             4688888776643322


Q ss_pred             HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          170 FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       170 ~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      ......-.- .+.+   .+.+|+++++++++++|++|++++|+||+|.+.|+++|+++|+++      ++++++|++|+.
T Consensus       108 ~~~~~~~~~-~~~~---~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~------gi~vvvD~t~~~  177 (364)
T PRK07269        108 WFNQQEKEG-RFHF---TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAK------GAKVIVDNTFYS  177 (364)
T ss_pred             HHHHHHhcC-cEEE---EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHc------CCEEEEECCCcc
Confidence            221110000 1111   145689999999999999999999999999999999999999999      999999999764


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHH
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~  327 (369)
                      ...  ..|     + ..++|.++.|++||++++.+  .|+++.++++.. +.+.....+.          |.  ......
T Consensus       178 ~~~--~~p-----l-~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~-~~~~~~~~~~----------G~--~~s~~~  236 (364)
T PRK07269        178 PIY--QRP-----I-ELGADIVLHSATKYLSGHNDVLAGVVVTNDLELY-EKLFYNLNTT----------GA--VLSPFD  236 (364)
T ss_pred             ccc--CCc-----h-hhCCcEEEecCceeccCCCcccceEEEeCcHHHH-HHHHHHHHHh----------CC--CCCHHH
Confidence            322  111     1 23899999999999987775  577777665432 2221101111          11  124677


Q ss_pred             HHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          328 QYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       328 ~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .|..++.|..  +..+  ++.++|++++++|++.+.+.+-+|
T Consensus       237 a~l~~~~L~t--L~~r~~~~~~na~~~a~~L~~~p~v~~v~y  276 (364)
T PRK07269        237 SYLLMRGLKT--LSLRMERSTANAQEVVAFLKKSPAVKEVLY  276 (364)
T ss_pred             HHHHHcCCCc--HHHHHHHHHHHHHHHHHHHHhCCCccEEeC
Confidence            7887777765  4433  899999999999999887776553

>PRK09148 aminotransferase; Validated

Probab=99.76  E-value=3.8e-16  Score=152.94  Aligned_cols=273  Identities=14%  Similarity=-0.013  Sum_probs=175.6

Q ss_pred             cCCCCccccccccCC-ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      .+.+.++|+...|.. +++.+.+.+.++++.. ...|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++++
T Consensus        28 ~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~I~it~G~~~al  105 (405)
T PRK09148         28 AGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNP--DTQVVATLGSKEGF  105 (405)
T ss_pred             cCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEcCChHHHH
Confidence            344445665555543 3456666677666432 3445555678999999999999888875321  12489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEe
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      .+++.++.++             ++.|++++|+|..+...+...|+.++.+|++.+ .+..+++++.+...+++++|+++
T Consensus       106 ~~~~~~l~~~-------------gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~  172 (405)
T PRK09148        106 ANMAQAITAP-------------GDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVN  172 (405)
T ss_pred             HHHHHHhcCC-------------CCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEe
Confidence            9988887542             478999999999999888999999999998753 24444444444444678999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-ccc-CCCCcEEEEcCccCCC-CCC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKYGL-VYA  283 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Dsi~~~~hK~l~-~p~  283 (369)
                      .|+||||.+.+   +++|.++|+++      ++++++|++|+.+...- .+.... .+. ......+.-+..|.++ ...
T Consensus       173 ~P~NPtG~~~s~~~l~~l~~~a~~~------~~~ii~De~Y~~~~~~~-~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl  245 (405)
T PRK09148        173 YPSNPTAYVADLDFYKDVVAFAKKH------DIIILSDLAYSEIYFDG-NPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW  245 (405)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHc------CeEEEEeccchhhhcCC-CCCCChhhCCCccCcEEEEeccccccCCcch
Confidence            99999999966   46788999999      99999999998754310 010000 111 1122234567889876 567


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--HhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .+|+++. +++.. ..+.....+...         +-   ..+.+.++...+.  .+-++++  ...+...++.+.|++.
T Consensus       246 R~G~~v~-~~~~i-~~l~~~~~~~~~---------~~---~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        246 RMGFAVG-NERLI-AALTRVKSYLDY---------GA---FTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA  311 (405)
T ss_pred             heeeeeC-CHHHH-HHHHHHHHHhcc---------CC---ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8999985 33222 222111111110         00   1233444444442  2223333  6677788888888887


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |+
T Consensus       312 ~~  313 (405)
T PRK09148        312 GW  313 (405)
T ss_pred             CC
Confidence            64

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.76  E-value=5.7e-17  Score=158.36  Aligned_cols=233  Identities=17%  Similarity=0.058  Sum_probs=162.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||+.    ++++.|...       .+.+++|+.|+.+++.++..+             +++||++.+.|.+...
T Consensus        60 nPtv~~lE~~----la~leg~~~-------av~~~SG~aAi~~al~all~~-------------GD~VI~~~~~Y~~T~~  115 (432)
T PRK06702         60 NPTLAAFEQK----LAELEGGVG-------AVATASGQAAIMLAVLNICSS-------------GDHLLCSSTVYGGTFN  115 (432)
T ss_pred             CcHHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHH
Confidence            4666777776    888988875       788999999999999877432             4799999998875544


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .    +..+|+++++++.     .+|+++++++|+++|++|++.+++||++.+.|+++|+++|+++      ++++++|+
T Consensus       116 ~~~~~l~~~Gi~v~~vd~-----~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~------gi~livD~  184 (432)
T PRK06702        116 LFGVSLRKLGIDVTFFNP-----NLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKEL------EVPFIVDN  184 (432)
T ss_pred             HHHHHHHHCCCEEEEECC-----CCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHc------CCEEEEEC
Confidence            4    6778999888853     4689999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCC-CCcc---ccccc-ccC-----ccCC----
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTK-DDLP---DELVF-HIN-----YLGS----  309 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~-~~~~---~~~~~-~~~-----y~~~----  309 (369)
                      +++...   +..  +.   ..++|.++-|..||+++..+.  |+++.... .+..   ..+.. +..     |...    
T Consensus       185 T~~tP~---~~~--pl---~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~  256 (432)
T PRK06702        185 TLATPY---LCQ--AF---EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAA  256 (432)
T ss_pred             CCCchh---hCC--hh---hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchh
Confidence            986422   221  11   348999999999998876544  43432211 1100   00000 000     0000    


Q ss_pred             -----CCCCcc-ccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          310 -----DQPTFT-LNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       310 -----~~~~~~-l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                           ...... .-|+  ...+...|..++.+..-..+-.+..+||..++++|++.+.++.-+|
T Consensus       257 ~~~~~~~~~~~~~~g~--~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~y  318 (432)
T PRK06702        257 AYIVKARVQLLRDYGN--CMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNY  318 (432)
T ss_pred             hHHHHHHHHHHHHccC--CCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEEC
Confidence                 000000 0022  3346788887777754333322888999999999999998876543

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.76  E-value=2.6e-17  Score=159.09  Aligned_cols=218  Identities=14%  Similarity=0.012  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HH
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FA  171 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~  171 (369)
                      ..+.+++.++.+.|.+.       .+++++|++|+..++.++.++             +++|+++.+.|..+..    .+
T Consensus        65 t~~~Le~~la~le~~~~-------~v~~sSG~aAi~~~l~all~~-------------GD~Vlv~~~~Y~~~~~l~~~~l  124 (395)
T PRK05967         65 TTDALCKAIDALEGSAG-------TILVPSGLAAVTVPFLGFLSP-------------GDHALIVDSVYYPTRHFCDTML  124 (395)
T ss_pred             HHHHHHHHHHHHhCCCC-------EEEECcHHHHHHHHHHHhcCC-------------CCEEEEccCCcHHHHHHHHHHH
Confidence            33445555888876553       677778999999888877542             5799999999988664    45


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      +.+|+++++++.+      +.++++++++++|++|++++|+||++.+.|+++|+++|+++      +++++||++|+.+.
T Consensus       125 ~~~Gi~v~~vd~~------~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~------g~~vvVD~t~a~p~  192 (395)
T PRK05967        125 KRLGVEVEYYDPE------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH------GAIVMMDNTWATPL  192 (395)
T ss_pred             HhcCeEEEEeCCC------CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHh------CCEEEEECCccCce
Confidence            6779998888643      34789999999999999999999999999999999999999      99999999998643


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      .  ..|   .+   .|+|.+.-|..||+.+..+  .|+++. +++.. ..+.......          |.  ...+..+|
T Consensus       193 ~--~~p---l~---~GaDivv~S~tKy~~Gh~d~~~G~v~~-~~~~~-~~l~~~~~~~----------G~--~~~p~da~  250 (395)
T PRK05967        193 Y--FRP---LD---FGVDISIHAATKYPSGHSDILLGTVSA-NEKCW-PQLLEAHGTL----------GL--CAGPDDTY  250 (395)
T ss_pred             e--cCh---hH---cCCCEEEEecccccCCCCCeeEEEEEc-CHHHH-HHHHHHHHHc----------CC--CCCHHHHH
Confidence            2  222   22   3899999999999765433  355543 32211 1111000000          11  22466788


Q ss_pred             HHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          330 YQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       330 ~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       251 l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~y  288 (395)
T PRK05967        251 QILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLH  288 (395)
T ss_pred             HHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEEC
Confidence            77777665555433999999999999999998876554

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.76  E-value=1.5e-16  Score=167.55  Aligned_cols=306  Identities=9%  Similarity=-0.013  Sum_probs=193.4

Q ss_pred             ccccccc-cchhHhhhCCCCCCC--CCCCCHHHHHHHHHHhhhhcCCCCccccc--cccCCChHHHHHHHHHHhc---c-
Q 017569           12 EILSSTF-ASRYVRAAIPRFKMP--DNSMPKEAAYQVINDELMLDGNPRLNLAS--FVTTWMEPECDKLVMASIN---K-   82 (369)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~~p--~~~~~~~~i~~~l~~~~~~~~~p~~~l~~--~~~~~~~~~v~~~~~~~~~---~-   82 (369)
                      ++|+++| ...|-.-......+|  ..+.++.++++.++++-..+.. ..|+.+  +-+...|+.+.+.+.+...   . 
T Consensus        57 ~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~-~~~fiG~G~y~~~~P~~v~~~i~~~~~~~Tay  135 (993)
T PLN02414         57 DSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKV-FKSYIGMGYYNTHVPPVILRNILENPGWYTQY  135 (993)
T ss_pred             cCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCc-cccccCCCCCCccCCHHHHHHHHhChHHHhhc
Confidence            4566777 444421122234566  2578999999999987655432 122222  2223345666566554332   1 


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 017569           83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (369)
Q Consensus        83 n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~  162 (369)
                      .+++++.+++.-+.-.+.+.++++|+|++.     .+..++.++|.+...++++.+..          +.++++|++++.
T Consensus       136 tPYqaEisQG~lqal~~~Qt~ia~LtG~~~-----anaSL~d~aTAaaea~~~a~~~~----------~g~~~~VlVs~~  200 (993)
T PLN02414        136 TPYQAEIAQGRLESLLNYQTMITDLTGLPM-----SNASLLDEGTAAAEAMAMCNNIL----------KGKKKKFLIASN  200 (993)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhCCCh-----hhEeecCChHHHHHHHHHHHhcc----------cCCCCEEEEcCc
Confidence            344444456777777789999999999997     34888889998887766655321          112468999999


Q ss_pred             CcchHHHHH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC
Q 017569          163 VQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       163 ~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      .|+++...+    +..|++++.+|++..    +      ...+.+..+++.+| +.+|.+.|+++|+++|+++      |
T Consensus       201 ~hP~~~~v~~t~a~~~GieV~~v~~~~~----~------~~~~~v~~vlvq~P-~~~G~v~dv~~I~~~ah~~------G  263 (993)
T PLN02414        201 CHPQTIDVCQTRADGLGLEVVVADEKDF----D------YSSGDVCGVLVQYP-ATDGEVLDYAEFVKNAHAN------G  263 (993)
T ss_pred             cCHhHHHHHHHhhhhcCCEEEEecchhh----c------cccCceEEEEEecC-CCCeEEcCHHHHHHHHHHc------C
Confidence            999876555    446999999987531    1      11223445554455 5669999999999999999      9


Q ss_pred             ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC-----CCCCCeEEEEEeCCCCcccccc-cccCccCCCC-
Q 017569          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-----LVYAGVGWVVWRTKDDLPDELV-FHINYLGSDQ-  311 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l-----~~p~g~g~l~~~~~~~~~~~~~-~~~~y~~~~~-  311 (369)
                      ++++| +|...+..+..      +....++|.++.++|||+     ++|. .|++++|++ .. +.+. .-..|..... 
T Consensus       264 aL~iV-aad~lal~~l~------~pge~GADi~vgsgqKwg~P~G~GGP~-aGflavr~~-~~-r~~PgriVG~s~d~~g  333 (993)
T PLN02414        264 VKVVM-ATDLLALTMLK------PPGEWGADIVVGSAQRFGVPMGYGGPH-AAFLATSQE-YK-RLMPGRIIGVSVDSSG  333 (993)
T ss_pred             CEEEE-EECHHHhcCCC------CHhhccCcEEEECCCccccCCCCCCCC-eeEEEECHH-HH-hhCCCcccCcccCCCC
Confidence            99999 66654443211      122448999999999998     4444 899999874 21 1221 0112210000 


Q ss_pred             -CCc--cc----------cCCcchhHHHHHHHHH-----HHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          312 -PTF--TL----------NFSKGSSQIIAQYYQF-----IRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       312 -~~~--~l----------~~tr~~~~~l~~~~~l-----~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                       .-+  ++          .+|.+.-...++++++     .++|.+|++++  ++.++++|++++|.+.|
T Consensus       334 ~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G  402 (993)
T PLN02414        334 KPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLG  402 (993)
T ss_pred             CcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence             000  00          2455443334444433     46799999998  89999999999999877

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.76  E-value=3e-17  Score=158.94  Aligned_cols=217  Identities=13%  Similarity=0.021  Sum_probs=151.6

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---  167 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~---  167 (369)
                      |....||+.    ++++.|.+.       .+++++|+.|+..++ .+..             .+++|+++++.|...   
T Consensus        50 p~~~~Le~~----la~l~g~~~-------al~~~SG~~Al~~~l-~~l~-------------pGd~Vi~~~~~y~~t~~~  104 (380)
T PRK06176         50 PTRFALEEL----IADLEGGVK-------GFAFASGLAGIHAVF-SLFQ-------------SGDHVLLGDDVYGGTFRL  104 (380)
T ss_pred             hhHHHHHHH----HHHHhCCCC-------EEEECCHHHHHHHHH-HHcC-------------CCCEEEEcCCChhHHHHH
Confidence            445566655    899999875       577777788886544 3322             147899999877643   


Q ss_pred             -HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          168 -EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       168 -~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                       ...+...|++++.++..      |++++++++++++++|++.+|+||+|.+.|+++|+++|+++      ++++++|++
T Consensus       105 ~~~~~~~~gi~v~~vd~~------d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~------gi~vivD~t  172 (380)
T PRK06176        105 FDKVLVKNGLSCTIIDTS------DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDH------GLLTIVDNT  172 (380)
T ss_pred             HHHHHHhcCeEEEEcCCC------CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHc------CCEEEEECC
Confidence             34456678888777642      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+.+..   ..  +.   ..++|.++.|++||+++|..  .|+++.++++.. ..+.......+.            ...
T Consensus       173 ~a~~~~---~~--p~---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~-~~~~~~~~~~G~------------~~~  231 (380)
T PRK06176        173 FATPYY---QN--PL---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALA-QEIAFFQNAIGG------------VLG  231 (380)
T ss_pred             cccccc---CC--cc---ccCCCEEEecCceeccCCccceeeEEEecHHHHH-HHHHHHHHHhcC------------CCC
Confidence            985432   11  11   23799999999999988764  576766554322 111100001110            112


Q ss_pred             HHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +...|..++.+  +.+..+  +..++|+.+++.|++++.+++.+|
T Consensus       232 ~~~~~l~~~gl--~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~  274 (380)
T PRK06176        232 PQDSWLLQRGI--KTLGLRMEAHQKNALCVAEFLEKHPKVEKVYY  274 (380)
T ss_pred             HHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence            34456555433  344433  788999999999999988876654

>PRK09105 putative aminotransferase; Provisional

Probab=99.76  E-value=9.1e-17  Score=155.42  Aligned_cols=244  Identities=18%  Similarity=0.086  Sum_probs=163.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.+++.... .|. .+...+|+    +.+++.+|++++     .+++|+|+++++.+++.++.++      
T Consensus        56 ~~~~~~~~a~~~~~~~~~-~Y~-~~~~~~Lr----~aia~~~~v~~e-----~I~it~Gs~~ai~~~~~~l~~~------  118 (370)
T PRK09105         56 GPSPAARDAAARSAALSG-RYD-LELEDDLR----TLFAAQEGLPAD-----HVMAYAGSSEPLNYAVLAFTSP------  118 (370)
T ss_pred             CCCHHHHHHHHHHHHHhc-CCC-CchHHHHH----HHHHHHhCcChh-----hEEEcCChHHHHHHHHHHHcCC------
Confidence            345677777776664322 222 22344444    457788898763     4899999999999988887542      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~  226 (369)
                             +++|++++|+|..+...++..|++++.+|++++ +.+|++++++. .+++++|++++|+||||.+.+.++|.+
T Consensus       119 -------gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~  189 (370)
T PRK09105        119 -------TAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD-GAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEW  189 (370)
T ss_pred             -------CCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence                   468999999999999999999999999998764 88999999887 567899999999999999999999888


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc-CccCCC-CCCCeEEEEEeCCCCccccccccc
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS-GHKYGL-VYAGVGWVVWRTKDDLPDELVFHI  304 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~-~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~  304 (369)
                      +++..++    ++|+++|++|..+..   .+ ...++....-+.+++. ..|.++ .++++|+++... +.. ..+..  
T Consensus       190 l~~~~~~----~~~lIvDEaY~~f~~---~~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~-~~i-~~l~~--  257 (370)
T PRK09105        190 LLANKPA----GSVLLVDEAYIHFSD---AP-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP-DLL-AKLAR--  257 (370)
T ss_pred             HHHhCCC----CcEEEEECchHHhcc---Cc-chHHHHhhCCCEEEEecccHhhcCCccceeeeecCH-HHH-HHHHh--
Confidence            8864311    899999999965321   11 0112211234566664 557763 556799998632 222 22211  


Q ss_pred             CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH-HHH--HhhHHHHHHHHHHHhcCC
Q 017569          305 NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI-PSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       305 ~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~-~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       + ..        .+   .....+.+++..+..+++ ++.  +..++.+++.+.|++.|+
T Consensus       258 -~-~~--------~~---~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  304 (370)
T PRK09105        258 -F-GH--------NP---LPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGY  304 (370)
T ss_pred             -c-CC--------CC---cCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence             1 00        01   123344455555543333 333  666777788888887663

>PRK05968 hypothetical protein; Provisional

Probab=99.75  E-value=7.5e-17  Score=156.81  Aligned_cols=214  Identities=16%  Similarity=0.095  Sum_probs=152.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...+||+.    +++++|.+.       .+++++|+.|+.+++.+...+             +++|+++.+.|..    
T Consensus        63 p~~~~le~~----lA~l~g~~~-------av~~~sG~~Ai~~al~al~~~-------------Gd~Vl~~~~~y~~t~~~  118 (389)
T PRK05968         63 PTVRAFEEM----LAKLEGAED-------ARGFASGMAAISSTVLSFVEP-------------GDRIVAVRHVYPDAFRL  118 (389)
T ss_pred             hhHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHH
Confidence            344556655    899999875       577788889998888765431             4689999888775    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+...|+++++++.+      |++++++++ ++|++|++.+|+++++.+.|+++|+++|+++      ++++++|++
T Consensus       119 ~~~~~~~~G~~v~~vd~~------d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~------gi~vivD~a  185 (389)
T PRK05968        119 FETILKRMGVEVDYVDGR------DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRH------GVVTMIDNS  185 (389)
T ss_pred             HHHHHHHcCceEEEeCCC------CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEECC
Confidence            335666779998888643      789999988 6789999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchh
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      |+.+..  ..|   .   ..++|.++.|++|++++|.+  .|+++. +++.. ..+.. ...+.+.         .   .
T Consensus       186 ~a~~~~--~~p---~---~~g~Divv~S~tK~l~g~~~~~gG~i~~-~~~~~-~~l~~~~~~~~g~---------~---~  243 (389)
T PRK05968        186 WASPVF--QRP---I---TLGVDLVIHSASKYLGGHSDTVAGVVAG-SKEHI-ARINAEAYPYLGA---------K---L  243 (389)
T ss_pred             Ccchhc--cCc---h---hcCCcEEEeeccccccCCCCeEEEEEEE-CHHHH-HHHHHHHHHhCCC---------C---C
Confidence            976442  111   1   23789999999999988755  576664 33332 11111 1112221         1   1


Q ss_pred             HHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDT  365 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~  365 (369)
                      ....+|..++.+..  +..+  +..++|++++++|++++.++.-
T Consensus       244 ~~~~A~~~l~~L~t--l~~r~~~~~~~a~~la~~L~~~p~v~~v  285 (389)
T PRK05968        244 SPFEAWLLLRGLRT--LPLRMKAHEASALEIARRLKAHPVVERV  285 (389)
T ss_pred             ChHHHHHHHcccCc--HHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence            23555555555543  3333  8888999999999998877643

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.75  E-value=9e-17  Score=154.37  Aligned_cols=254  Identities=12%  Similarity=0.064  Sum_probs=168.2

Q ss_pred             ccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+...+.. +++.+.+++.+++......|. .++..+++++    +++++++++     ..+++|+|+++++.+++.+
T Consensus        27 i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~a----ia~~~~~~~-----~~I~it~G~~~al~~~~~~   96 (353)
T PRK05387         27 IKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQA----IAAYYGLDP-----EQVFVGNGSDEVLAHAFLA   96 (353)
T ss_pred             eeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHH----HHHHhCCCH-----HHEEEcCCHHHHHHHHHHH
Confidence            4455444443 356788888877654333332 3344555544    777778765     3499999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +.++             ++.|++++++|..+...++..|++++.+|++++ +.+|++++++    .+++|++++|+||||
T Consensus        97 l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~----~~~~v~~~~P~NPtG  158 (353)
T PRK05387         97 FFNH-------------DRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDD-FSIDVEDYLR----PNGGIIFPNPNAPTG  158 (353)
T ss_pred             hcCC-------------CCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCC-CCCCHHHHHh----cCCEEEEeCCCCCCC
Confidence            7552             478999999999899889999999999999764 8999999864    457889999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDD  295 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~  295 (369)
                      .+.+.+++.++++...     ++++++|++|..+..    ...........-..+..+..|.++ .+..+|+++.. ++.
T Consensus       159 ~~~~~~~~~~l~~~~~-----~~~livDe~y~~~~~----~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~  228 (353)
T PRK05387        159 IALPLAEIERILAANP-----DSVVVIDEAYVDFGG----ESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGH-PEL  228 (353)
T ss_pred             CCCCHHHHHHHHHhCC-----CcEEEEeCcccccCC----cchHHHHhhCCCEEEEEehhHhhcchhhhceeeecC-HHH
Confidence            9999999999998742     899999999964321    100011111122466667899875 55788998853 322


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . +.+.......    ..    ++-   ..+.++++...+.. +.+++.  +..++.+++.+.|++.|+
T Consensus       229 ~-~~l~~~~~~~----~~----~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  285 (353)
T PRK05387        229 I-EALNRVKNSF----NS----YPL---DRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGF  285 (353)
T ss_pred             H-HHHHHhhccC----CC----CCc---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            2 2221100000    00    111   23344444444432 234444  677888899999988764

>PRK06855 aminotransferase; Validated

Probab=99.75  E-value=2.3e-16  Score=155.66  Aligned_cols=212  Identities=9%  Similarity=-0.095  Sum_probs=152.1

Q ss_pred             CCCccccccccC----CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           55 NPRLNLASFVTT----WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        55 ~p~~~l~~~~~~----~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      .+.++++.+.|.    .+++.+.+++.+++.. ....|....+..++++++.+|+++..|.+.+.   ..+++|+|+++|
T Consensus        32 ~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~---~~I~it~G~~~a  108 (433)
T PRK06855         32 VKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITP---DDIIFFNGLGDA  108 (433)
T ss_pred             ccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCH---hHEEEcCcHHHH
Confidence            344555555552    3456678887777643 33456666789999999999999987876432   358999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH-hhhcceeEEEeccC-CccccCHHHHHHHHh--hcCcE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-RYFEVELKEVKLEE-GYYVMNPVKAVELVD--ENTIC  205 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~-~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--~~~~~  205 (369)
                      +.+++. +.++             ++.|++++|+|+.+..+. ...|+.++.+|+++ +++.+|+++|++++.  +++++
T Consensus       109 l~~~~~-l~~~-------------Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~  174 (433)
T PRK06855        109 IAKIYG-LLRR-------------EARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAG  174 (433)
T ss_pred             HHHHHH-hcCC-------------CCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceE
Confidence            988764 3331             478999999998876543 34588888899874 457899999999997  35788


Q ss_pred             EEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCc-EEEEcCccCCC
Q 017569          206 VAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVK-SINVSGHKYGL  280 (369)
Q Consensus       206 v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~D-si~~~~hK~l~  280 (369)
                      +++++|+||||.+.+   +++|+++|+++      ++||++|.+|+.+...  ......... ...-. .+..|.-|.++
T Consensus       175 i~l~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~II~De~Y~~l~~~--~~~~~sl~~~~~~~~~I~~~S~SK~~~  246 (433)
T PRK06855        175 ILLINPDNPTGAVYPKEILREIVDIAREY------DLFIICDEIYNNIVYN--GKKTVPLSEVIGDVPGIALKGISKELP  246 (433)
T ss_pred             EEEECCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccccccC--CCCCCCHHHHcCcCCeEEEecCccccC
Confidence            899999999999955   77788889999      9999999999875431  111111111 11112 34455789884


Q ss_pred             -CCCCeEEEEEe
Q 017569          281 -VYAGVGWVVWR  291 (369)
Q Consensus       281 -~p~g~g~l~~~  291 (369)
                       ..+.+|++++.
T Consensus       247 ~pGlRiG~ii~p  258 (433)
T PRK06855        247 WPGSRCGWIEVY  258 (433)
T ss_pred             CCcceEEEEEEe
Confidence             78999999974

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.75  E-value=5.9e-17  Score=156.38  Aligned_cols=248  Identities=13%  Similarity=0.040  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      .+..+++.+.+++++... .++...+||++    +++++|.+.       .+.+++||.|+.+++.++.-.         
T Consensus         5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~----~a~~~g~~~-------~~~~~sgt~Al~~al~~l~~~---------   63 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKE----FAEYFGVKY-------AVAVSSGTSALHLALRALGLG---------   63 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSS-SSHHHHHHHHH----HHHHHTSSE-------EEEESSHHHHHHHHHHHTTGG---------
T ss_pred             HHHHHHHHHHHHhCCccC-CCHHHHHHHHH----HHHHhCCCe-------EEEeCChhHHHHHHHHhcCCC---------
Confidence            445677778887774432 26778888887    888899876       899999999999999985321         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHH
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~  229 (369)
                         .+++|++|..++.+...++...|+.+++++++++++.||+++++++|+++|++|+   +++..|.+.|+++|.++|+
T Consensus        64 ---~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~---~~h~~G~~~d~~~i~~~~~  137 (363)
T PF01041_consen   64 ---PGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAIL---VVHLFGNPADMDAIRAIAR  137 (363)
T ss_dssp             ---TTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEE---EE-GGGB---HHHHHHHHH
T ss_pred             ---cCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEE---EecCCCCcccHHHHHHHHH
Confidence               2479999999999999999999999999999987899999999999999998887   4556788889999999999


Q ss_pred             HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc--CccCCCCCCCeEEEEEeCCCCccccc-ccccCc
Q 017569          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDEL-VFHINY  306 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~-~~~~~y  306 (369)
                      ++      |++++.|+|++.+..  ....   .... .-|.-++|  ..|.+.++.| |++++++++...... ..+...
T Consensus       138 ~~------~i~lIeD~a~a~g~~--~~g~---~~G~-~gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~  204 (363)
T PF01041_consen  138 KH------GIPLIEDAAQAFGAR--YKGR---PVGS-FGDIAIFSFHPTKIITTGEG-GAVVTNDPELAERARALRNHGR  204 (363)
T ss_dssp             HT------T-EEEEE-TTTTT-E--ETTE---ETTS-SSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTE
T ss_pred             Hc------CCcEEEccccccCce--eCCE---eccC-CCCceEecCCCCCCCcCCCC-eeEEecHHHHHHHhhhhhccCc
Confidence            99      999999999987654  2211   1111 12555555  5588865555 888887754432110 011111


Q ss_pred             cCCCCCC------ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          307 LGSDQPT------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       307 ~~~~~~~------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .......      +..+...   ..+.+...+..|.  -+.+.  +..++++++.+.|...+.+
T Consensus       205 ~~~~~~~~~~~~~~g~n~rm---~~~~AAigl~QL~--~L~~~~~~R~~~a~~y~~~L~~~~~~  263 (363)
T PF01041_consen  205 SRDAFRRYRHELPPGYNFRM---SELQAAIGLAQLK--RLDEIIARRRENAQRYREALAGIPGI  263 (363)
T ss_dssp             ETSECSTTEESSSS--B-B----BHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHTTGTTE
T ss_pred             CccccccccccccCCccccc---HHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhcCCCc
Confidence            1000000      1111111   1233333333332  23333  7789999999999998765

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK06460 hypothetical protein; Provisional

Probab=99.75  E-value=5.1e-17  Score=157.26  Aligned_cols=218  Identities=14%  Similarity=0.052  Sum_probs=149.6

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC----Ccc
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN----VQV  165 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~----~h~  165 (369)
                      .|...++|+.    +++++|.+.       .+++++|++|+..++.++..+             +++|+++.+    ++.
T Consensus        44 ~p~~~~L~~~----lA~l~g~~~-------~v~~~sG~~ai~~~l~al~~~-------------Gd~Vl~~~~~~~~ty~   99 (376)
T PRK06460         44 NPTVLELTKK----IVELENAEM-------GVAFSSGMGAISTTALALLKP-------------GNSVLVHRDMFGRSYR   99 (376)
T ss_pred             CccHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCCcCcHHH
Confidence            3455666655    889999874       456677789998887776442             468888864    444


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .+...++..|++++.++.+.      .+.+++.+++++++|++++|+||+|.+.|+++|+++|+++      ++++++|+
T Consensus       100 ~~~~~~~~~G~~v~~~~~~~------~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~------g~~vivDe  167 (376)
T PRK06460        100 FFTDYLKNWGVNVDASNPGS------DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKEN------GSILIVDA  167 (376)
T ss_pred             HHHHHHHhhCcEEEEECCCC------HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEEC
Confidence            56677788899988887643      2345555677899999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..  ..     .+ ..++|.++.+++|+++++.+  .|+++. +++.. +.+.......+         .+   .
T Consensus       168 a~~~~~~--~~-----~l-~~~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~-~~l~~~~~~~g---------~~---~  225 (376)
T PRK06460        168 TFSTPIN--QK-----PL-ELGADIVVHSASKFLAGHNDVIAGLAAG-YGKLL-NVIDQMRRTLG---------TS---L  225 (376)
T ss_pred             CcCcccc--CC-----hh-hcCCCEEEeecceeccCCCCceEEEEec-CHHHH-HHHHHHHHhcC---------CC---C
Confidence            9875321  11     11 23579999999999865432  676664 33322 22211011111         01   1


Q ss_pred             HHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|.+++.+  +-+..+  +..++++++++.|++.+.+++.+|
T Consensus       226 ~~~~a~~~l~~~--~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~y  269 (376)
T PRK06460        226 DPHAAYLTLRGI--KTLKIRMDVINRNAEQIAEFLEGHPKVVKVYY  269 (376)
T ss_pred             CHHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            234556655543  344444  899999999999999998877654

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.75  E-value=3.8e-16  Score=152.47  Aligned_cols=264  Identities=14%  Similarity=0.030  Sum_probs=171.6

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|..+.+. ++++.+.+++.+..+ ....|....+..++++++.+++.+ .|...+   ...+++|+|+++|+.+++.
T Consensus        32 ~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~---~~~i~~t~G~~~al~~~~~  106 (397)
T PRK07568         32 VYHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYKK-WGIDVE---PDEILITNGGSEAILFAMM  106 (397)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHHH-hCCCCC---cceEEEcCChHHHHHHHHH
Confidence            3455555554 345667777776653 334455556788899888887763 454321   1358899999999988887


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-Cccc-cCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYV-MNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~-~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      ++..+             +++|++++++|..+...++..|++++.++++. +++. .|+++|++++++++++|++++|+|
T Consensus       107 ~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~N  173 (397)
T PRK07568        107 AICDP-------------GDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGN  173 (397)
T ss_pred             HhcCC-------------CCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCC
Confidence            76432             46899999999888888889999999999863 3344 368999999988999999999999


Q ss_pred             CcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCC--Cc-EEEEcCccCCC-CCCCeE
Q 017569          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL--VK-SINVSGHKYGL-VYAGVG  286 (369)
Q Consensus       214 ~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~--~D-si~~~~hK~l~-~p~g~g  286 (369)
                      |||.+.   ++++|+++|+++      ++++++|++|+.+..  -.+.........+  -. .+.-+..|.++ ...++|
T Consensus       174 PtG~~~~~~~~~~i~~~~~~~------~~~ii~De~y~~~~~--~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G  245 (397)
T PRK07568        174 PTGVVYTKEELEMLAEIAKKH------DLFLISDEVYREFVY--DGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIG  245 (397)
T ss_pred             CCCccCCHHHHHHHHHHHHHC------CcEEEEeccchhccc--CCCCccChhhcCCCcCCEEEEecchhhccCCCcceE
Confidence            999985   488999999999      999999999987543  1111111111111  12 33446889876 467899


Q ss_pred             EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++++.+++... .+.....   .   .+    +-   ..+.+.++...+  +.+-++++  ...+..+++.+.|++.+
T Consensus       246 ~~~~~~~~~~~-~~~~~~~---~---~~----~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  309 (397)
T PRK07568        246 CLISKNKELIA-AAMKLCQ---A---RL----SP---PTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIP  309 (397)
T ss_pred             EEecCCHHHHH-HHHHHhh---c---cC----CC---CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875443331 1110000   0   00    11   112222323333  23334444  56777788888887763

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.75  E-value=4.2e-16  Score=152.52  Aligned_cols=211  Identities=13%  Similarity=-0.025  Sum_probs=151.3

Q ss_pred             CccccccccCCC-hHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           57 RLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        57 ~~~l~~~~~~~~-~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      .++|+.+.|... ++.+.+.+.+.+.. ....|....+..++++++++|+.+.+|.+.+.  +..+++|+|+++++.+++
T Consensus        35 ~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~--~~~I~it~G~~~al~~~~  112 (403)
T PRK08636         35 IIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDP--ETEVVATMGSKEGYVHLV  112 (403)
T ss_pred             EEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEECCChHHHHHHHH
Confidence            355655555432 34455555544433 34556556788999999999999988876421  114899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHH----HHHHh---hcCcEE
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKA----VELVD---ENTICV  206 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L----~~~i~---~~~~~v  206 (369)
                      .++.++             ++.|++++|+|+.+...++..|++++.||++ ++++.+|++.+    +++++   ++++++
T Consensus       113 ~~l~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i  179 (403)
T PRK08636        113 QAITNP-------------GDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYV  179 (403)
T ss_pred             HHhCCC-------------CCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEE
Confidence            887652             5799999999999999999999999999985 23478998754    55554   367899


Q ss_pred             EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCC---CcEEEEcCccCC-
Q 017569          207 AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL---VKSINVSGHKYG-  279 (369)
Q Consensus       207 ~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~---~Dsi~~~~hK~l-  279 (369)
                      +++.|+||||.+-+   +++|.++|+++      ++|+++|.+|+.+...  ......-..+..   .-..+.+.-|.+ 
T Consensus       180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~II~De~Y~~l~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~  251 (403)
T PRK08636        180 VVNFPHNPTTATVEKSFYERLVALAKKE------RFYIISDIAYADITFD--GYKTPSILEVEGAKDVAVESYTLSKSYN  251 (403)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHc------CcEEEEeccchhhccC--CCCCCChhcCCCccccEEEEEecccccC
Confidence            99999999999854   67888999999      9999999999875431  101011011111   112245788998 


Q ss_pred             CCCCCeEEEEE
Q 017569          280 LVYAGVGWVVW  290 (369)
Q Consensus       280 ~~p~g~g~l~~  290 (369)
                      .....+|+++.
T Consensus       252 ~~GlRiG~iv~  262 (403)
T PRK08636        252 MAGWRVGFVVG  262 (403)
T ss_pred             CccceeeeeeC
Confidence            57789999875

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.75  E-value=3.7e-17  Score=156.57  Aligned_cols=250  Identities=14%  Similarity=0.019  Sum_probs=172.7

Q ss_pred             hHHHHHHHHHHhcc--C--CCCCCC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCC-chHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINK--N--YVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG-SSEAIMLAGLAFKRK  140 (369)
Q Consensus        69 ~~~v~~~~~~~~~~--n--~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~G-gt~a~~~al~~~~~~  140 (369)
                      |..+.+.+.+++.+  |  ...+..   ++...++-+++++.+++++|.+.+    ...++++| ||+|+..++..+..+
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~----~~v~~~~gsgT~a~ea~~~nl~~~   79 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDN----YEVLFLQGGATGQFAAVPLNLLAE   79 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHHhcCCC
Confidence            45677777766642  1  122221   234558888999999999998532    34677766 999998888876432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcc--hHHHHHhhhcceeEEEeccCC---ccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLEEG---YYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~--s~~~~~~~~G~~v~~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                                   +.++++-..+.+  .+.+.++.+|+ +..+..++.   .-.+|+++++  +++++++|.+++..|.|
T Consensus        80 -------------~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETst  143 (349)
T TIGR01364        80 -------------GKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIH  143 (349)
T ss_pred             -------------CCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcc
Confidence                         233333222222  35677888899 887776521   1245666655  35678999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |...|     ++++.+      +++++||++++.+..|       ++++  ..|.+++++||++ +|+|.|+++++++.+
T Consensus       144 Gv~~~-----~l~~~~------~~l~iVDavss~g~~~-------id~~--~~d~~~~ssqK~l-gP~Glg~l~~s~~~~  202 (349)
T TIGR01364       144 GVEFR-----ELPDVK------NAPLVADMSSNILSRP-------IDVS--KFGLIYAGAQKNI-GPAGLTVVIVRKDLL  202 (349)
T ss_pred             cEecc-----eecccC------CCeEEEEccccccCcc-------CCHH--HccEEEEeccccc-CCCceEEEEECHHHH
Confidence            99876     677778      9999999999876652       3433  4679999999998 599999999987522


Q ss_pred             cccccccccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          296 LPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      - ..-.....|....  ..+....+|.+...+.++..+|+.+..+ |++.+  |+.++++++++.|++++
T Consensus       203 ~-~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~  271 (349)
T TIGR01364       203 G-RASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSN  271 (349)
T ss_pred             h-hcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1 1000111111100  0111233789998999999999999888 79999  99999999999999995

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK04311 selenocysteine synthase; Provisional

Probab=99.75  E-value=2e-16  Score=155.89  Aligned_cols=194  Identities=16%  Similarity=0.124  Sum_probs=135.9

Q ss_pred             CChHHHHHHHHHHhccCC-CCCC--CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY-VDMD--EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~-~~~~--~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      +.++.+.+++.+++.... ..+.  ........ ..+.+.+++++|.+.       .+++++|+.|+.+++.++ .    
T Consensus        97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~-~~~e~~lA~l~Gae~-------a~vv~sgtaAl~l~l~~l-~----  163 (464)
T PRK04311         97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRD-RALAALLCALTGAED-------ALVVNNNAAAVLLALNAL-A----  163 (464)
T ss_pred             CCCHHHHHHHHHHHhcccccccchhhcccchHH-HHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHh-C----
Confidence            445778888887775432 1111  11122222 356677999999974       688889999998877553 1    


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch------HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC--c
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVC------WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL--T  215 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s------~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~--t  215 (369)
                               .+++||++...|+.      +...++..|+++++++.+.   ..++++++++|+++|++|++.+++|+  +
T Consensus       164 ---------~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~---~t~~~dle~aI~~~TklV~~vh~sN~~i~  231 (464)
T PRK04311        164 ---------AGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN---RTHLRDYEQAINENTALLLKVHTSNYRIE  231 (464)
T ss_pred             ---------CCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC---CCCHHHHHHhcCccCeEEEEEcCCCcccc
Confidence                     14689999876652      3345667799998887642   45799999999999999999999997  3


Q ss_pred             c--cCCCHHHHHHHHHHhhhccCCCceEEeecccccccc--cccCCCcc--ccccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          216 G--EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA--PFLYPDLE--WDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       216 G--~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~--~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      |  ...|+++|+++|+++      ++++++|++.|...-  .+..+..+  .+....++|.+++|+|||+++|. +|+++
T Consensus       232 G~~~~~dl~eI~~lak~~------gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~-~G~i~  304 (464)
T PRK04311        232 GFTKEVSLAELAALGKEH------GLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ-AGIIV  304 (464)
T ss_pred             ccCCcCCHHHHHHHHHHc------CCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc-eEEEE
Confidence            4  567999999999999      999999997554210  01000111  11113589999999999998885 78888


Q ss_pred             EeC
Q 017569          290 WRT  292 (369)
Q Consensus       290 ~~~  292 (369)
                      .++
T Consensus       305 g~~  307 (464)
T PRK04311        305 GKK  307 (464)
T ss_pred             EcH
Confidence            764

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.75  E-value=4.6e-17  Score=156.83  Aligned_cols=254  Identities=13%  Similarity=0.001  Sum_probs=167.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe-CCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..++.+.+++......-..-...++...++.+++++.+++++|++.+    ..++++ .+||.++..++..+...     
T Consensus        13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~----~~v~f~~gs~T~a~~~~~~~l~~~-----   83 (361)
T TIGR01366        13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDG----YEVILGNGGATAFWDAATFGLIEK-----   83 (361)
T ss_pred             CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCchhHHHHHHHHhcccc-----
Confidence            34566666654221011100123456678888999999999999642    346776 55999999888776421     


Q ss_pred             HhcCCCCCCCeEEecCCCcc-hHHHHHhhh--cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          146 KEQGKPYDKPNIVTGANVQV-CWEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~-s~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                               ..++++.-.|. .+.+.+...  +.+++.++++.. ..++.     .+.+++++|.+++.+|.||.+.|++
T Consensus        84 ---------~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~  148 (361)
T TIGR01366        84 ---------KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPG-SAPEP-----QADPGVDVIAWAHNETSTGVAVPVR  148 (361)
T ss_pred             ---------cccEEecCHHHHHHHHHHHhhhccCCceEEecCCC-CCCCC-----ccCCCCCEEEEcccCCccceecccc
Confidence                     23333333443 244445542  236788877643 33333     3567899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc-cccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-DELV  301 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~  301 (369)
                      +|   ++++      +++++||++++.+..       +.+++  .+|.+++++|||+++|+|.++++++++.... ..+.
T Consensus       149 ~I---~~~~------g~~~iVDavqs~g~~-------~idv~--~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~  210 (361)
T TIGR01366       149 RP---EGSD------DALVVIDATSGAGGL-------PVDIA--ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIA  210 (361)
T ss_pred             cc---cccC------CCeEEEEcCccccCC-------CCCHH--HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhccc
Confidence            88   4788      999999999987665       34444  4899999999999988888887777642210 0000


Q ss_pred             cc----cCccCC-----CCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          302 FH----INYLGS-----DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       302 ~~----~~y~~~-----~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ..    +.|+..     ........+|.+....+++..+++.+..+ |+..+  ++.+++++++++|++.+++
T Consensus       211 ~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~  283 (361)
T TIGR01366       211 ASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYA  283 (361)
T ss_pred             CCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            00    011100     00011223566666667889999999888 68887  9999999999999999964

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.75  E-value=8.9e-17  Score=154.85  Aligned_cols=247  Identities=16%  Similarity=0.079  Sum_probs=164.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++.+.++...  +....+..+++++    +++++++++     ...++|+|+++++..++.++.++       
T Consensus        43 ~~~~v~~a~~~~~~~~~--~~p~~g~~~lr~~----ia~~~~~~~-----~~i~~t~G~~~~l~~~~~~~~~~-------  104 (359)
T PRK03158         43 PSPKVKEAIAAHLDELA--LYPDGYAPELRTK----VAKHLGVDE-----EQLLFGAGLDEVIQMISRALLNP-------  104 (359)
T ss_pred             CCHHHHHHHHHHHHHhh--cCCCCcHHHHHHH----HHHHhCCCH-----HHEEECCCHHHHHHHHHHHHhCC-------
Confidence            45667888777765422  2233466666655    666677765     24899999999998877776432       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l  227 (369)
                            ++.|+++.++|..+...+...|++++.+|++  ++.+|++++++++++++++|++++|+||||.+.+.++|.++
T Consensus       105 ------gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~  176 (359)
T PRK03158        105 ------GTNTVMAEPTFSQYRHNAIIEGAEVREVPLK--DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSF  176 (359)
T ss_pred             ------CCEEEEcCCCHHHHHHHHHHcCCeEEEEecC--CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence                  4689999999999999999999999999997  36899999999998899999999999999999999999999


Q ss_pred             HHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCc
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINY  306 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y  306 (369)
                      ++....    ++++++|++|..+...-..+.....+....-..+..+..|.++ .+..+|+++..+ +.. +.+...   
T Consensus       177 ~~~~~~----~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~-~~~-~~~~~~---  247 (359)
T PRK03158        177 LESVPS----HVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE-ELI-EKLNIA---  247 (359)
T ss_pred             HHhCCC----CcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH-HHH-HHHHHh---
Confidence            987411    8999999999875431000100001111122344456789875 457789988642 222 222110   


Q ss_pred             cCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH-HHH--HhhHHHHHHHHHHHhcC
Q 017569          307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI-PSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       307 ~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~-~~~--~~~~~a~~l~~~L~~~g  360 (369)
                       ..   .+   +    ...+.+.++...+....+ ++.  ...+..+++.+.|.+.|
T Consensus       248 -~~---~~---~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  293 (359)
T PRK03158        248 -RP---PF---N----TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYG  293 (359)
T ss_pred             -cC---CC---C----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence             00   01   1    124455555555543333 333  44566677778887765

>PLN02231 alanine transaminase

Probab=99.74  E-value=2.2e-16  Score=158.91  Aligned_cols=210  Identities=10%  Similarity=0.020  Sum_probs=154.8

Q ss_pred             ccccccccCCChHHHHHHHHHHhcc----CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      +++....+.++...+..+ .+.+..    ..+.|..+.|..++++++.+|+.+..|.+.+.   .++++|+|+++|+.++
T Consensus       132 i~~~~~~~~fp~~~i~~a-~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~p---e~I~iT~Ga~~ai~~~  207 (534)
T PLN02231        132 LDKSETHGLFSADAIERA-WQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADP---NDIFLTDGASPAVHMM  207 (534)
T ss_pred             CCCCCccccCCHHHHHHH-HHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCc---ccEEEeCCHHHHHHHH
Confidence            455444444444333333 344443    23557777899999999999999888876532   4589999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh------cCcEE
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICV  206 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v  206 (369)
                      +.++...            .++.|+++.|+|+.+...++..|+.++.+++++ ++|.+|+++|++++++      +++++
T Consensus       208 ~~~l~~~------------~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~i  275 (534)
T PLN02231        208 MQLLIRS------------EKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRAL  275 (534)
T ss_pred             HHHhccC------------CCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEE
Confidence            8887531            147899999999999999999999999999985 3589999999999976      67889


Q ss_pred             EEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C--------CCCcEEEE-
Q 017569          207 AAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--------PLVKSINV-  273 (369)
Q Consensus       207 ~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--------~~~Dsi~~-  273 (369)
                      +++.|+||||.+-   .+++|.++|+++      ++++++|++|.....  ........+. +        .....+++ 
T Consensus       276 vl~nP~NPTG~vls~e~l~~Iv~~a~~~------~l~lI~DEvY~~l~y--~~~~~~~s~~~~~~~~g~~~~~~~vi~l~  347 (534)
T PLN02231        276 VVINPGNPTGQVLAEENQRDIVEFCKQE------GLVLLADEVYQENVY--VPDKKFHSFKKVARSMGYGEKDISLVSFQ  347 (534)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCcccHHHHHhhhccccCCceEEEEe
Confidence            9999999999984   588899999999      999999999987554  1111111111 1        11224544 


Q ss_pred             cCccCC--CCCCCeEEEEEe
Q 017569          274 SGHKYG--LVYAGVGWVVWR  291 (369)
Q Consensus       274 ~~hK~l--~~p~g~g~l~~~  291 (369)
                      |.-|.+  .+++.+|++++.
T Consensus       348 S~SK~~~g~pGlRiGy~~~~  367 (534)
T PLN02231        348 SVSKGYYGECGKRGGYMEVT  367 (534)
T ss_pred             ccCcccccCCccceEEEEEe
Confidence            578943  468999999863

>PLN02242 methionine gamma-lyase

Probab=99.74  E-value=3.6e-17  Score=160.07  Aligned_cols=214  Identities=14%  Similarity=-0.014  Sum_probs=150.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||+.    +++++|.+.       .++++||++|+..++.++..+             +++|+++.+.|..+..
T Consensus        75 ~Pt~~~LE~~----lA~l~g~~~-------~l~~~sG~~Ai~~al~al~~~-------------GD~Vl~~~~~Y~~~~~  130 (418)
T PLN02242         75 NPTVLNLGRQ----MAALEGTEA-------AYCTASGMSAISSVLLQLCSS-------------GGHVVASNTLYGGTHA  130 (418)
T ss_pred             ChhHHHHHHH----HHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEcCCcHHHHHH
Confidence            3455666655    899999986       689999999999998887542             4789999998877655


Q ss_pred             HH-----hhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEe
Q 017569          170 FA-----RYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       170 ~~-----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                      .+     +..|++++.++.+      |+++|++++++ +|++|++++++||+|.+.|+++|+++|+++      ++++++
T Consensus       131 ~~~~~~~~~~G~~~~~~d~~------d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~------gi~liv  198 (418)
T PLN02242        131 LLAHFLPRKCNITTTFVDIT------DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEK------GVTVVV  198 (418)
T ss_pred             HHHHhhhhccCceEEEcCCC------CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHh------CCEEEE
Confidence            44     3467777666542      78999999988 599999999999999999999999999999      999999


Q ss_pred             ecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcc
Q 017569          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~  321 (369)
                      |++|+.+..   .+   .   ..++|.++.+.+|+++++..  .|+++.+ ++.. ..+..   +....   ....|.. 
T Consensus       199 Dea~~~~~~---~~---~---~~g~divv~S~SK~l~g~g~~~gG~iv~~-~~li-~~l~~---~~~~~---~~~~g~~-  260 (418)
T PLN02242        199 DNTFAPMVL---SP---A---RLGADVVVHSISKFISGGADIIAGAVCGP-AELV-NSMMD---LHHGA---LMLLGPT-  260 (418)
T ss_pred             ECCCCccCC---CH---H---HcCCcEEEEeCccccCCCCCceEEEEEcC-HHHH-HHHHH---Hhhhh---hhccCCC-
Confidence            999964321   11   1   12689999999999876643  4766643 3222 12111   10000   0011221 


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                       ..+..+|..++.+.  -+..+  +..+++++++++|++.|
T Consensus       261 -~~~~~A~l~~~~l~--tl~~r~~~~~~~a~~la~~L~~~~  298 (418)
T PLN02242        261 -MNPKVAFELSERLP--HLSLRMKEHCRRAMEYAKRMKELG  298 (418)
T ss_pred             -CCHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHhCC
Confidence             12344454444433  33333  88999999999999986

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.74  E-value=2.2e-16  Score=153.43  Aligned_cols=262  Identities=13%  Similarity=0.021  Sum_probs=169.0

Q ss_pred             CCCCccccccc-cCC-ChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           54 GNPRLNLASFV-TTW-MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        54 ~~p~~~l~~~~-~~~-~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      ++..++|.... ++. +++.+.+++.++++..   ...+....+...+.+++.+++++++|.+.       .++.++|++
T Consensus        32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~-------~i~~~sG~~  104 (385)
T TIGR01825        32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEA-------ALVFQSGFN  104 (385)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECcHHH
Confidence            44445555443 333 4577788877777543   22333445778899999999999999653       344455588


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCc
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI  204 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~  204 (369)
                      ++..++.++..+             ++.|+++.++|.++...+...|+++..++      .+|++++++.+.+    +++
T Consensus       105 a~~~a~~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~l~~~l~~~~~~~~~  165 (385)
T TIGR01825       105 TNQGVLSALLRK-------------GDIVLSDELNHASIIDGLRLTKATKKIYK------HADMDDLDRVLRENPSYGKK  165 (385)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEEccccHHHHHHHHhcCCceEEeC------CCCHHHHHHHHHhhccCCCe
Confidence            888777766432             46899999999999888888888776553      4677888887764    578


Q ss_pred             EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-CC-ccccccCCCCcEEEEcCccCCCCC
Q 017569          205 CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PD-LEWDFRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~-~~~~~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      +|++....|++|.+.|+++|.++|+++      ++++++|++|+.+..+... +. ...++. ...|.+..+.+|+++++
T Consensus       166 ~v~~~~v~~~tG~~~~~~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~  238 (385)
T TIGR01825       166 LIVTDGVFSMDGDVAPLPEIVELAERY------GAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVV  238 (385)
T ss_pred             EEEEecCCcCCCCccCHHHHHHHHHHh------CCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcC
Confidence            888888899999999999999999999      9999999999765442100 00 011222 45788888999998543


Q ss_pred             CCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          283 AGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                       | |+++.+ ++.. ..+... ..|.        ..+..+....+++..+++.+.... ... +..++.+++++.|+++|
T Consensus       239 -g-G~~~~~-~~~~-~~~~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~l~~~L~~~g  305 (385)
T TIGR01825       239 -G-GYAAGH-KELI-EYLKNRARPFL--------FSTAQPPAVVAALAAAVDELQRSP-ELMERLWDNTRFFKAGLGKLG  305 (385)
T ss_pred             -C-CEEecC-HHHH-HHHHHhCcccc--------ccCCCCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHcC
Confidence             3 666543 2222 222111 1111        111111222344445555543221 223 66778899999998875


Q ss_pred             C
Q 017569          361 Y  361 (369)
Q Consensus       361 ~  361 (369)
                      +
T Consensus       306 ~  306 (385)
T TIGR01825       306 Y  306 (385)
T ss_pred             C
Confidence            3

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.74  E-value=8.9e-17  Score=156.08  Aligned_cols=203  Identities=20%  Similarity=0.129  Sum_probs=146.4

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      .++|+...+. ++++.+.+++.++++... ..|....+..++++    ++++++|+++     ..+++|+|+++++..++
T Consensus        30 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~----~ia~~l~~~~-----~~v~~~~g~t~al~~~~  100 (380)
T PRK06225         30 MIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRE----LILKDLGLDD-----DEALITAGATESLYLVM  100 (380)
T ss_pred             eEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHH----HHHHhcCCCC-----CcEEEeCCHHHHHHHHH
Confidence            3445544333 345778888888876532 22322334455554    4788888876     24899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      .++..+             ++.|++++++|..+...++..|++++.+|++  ++++.+|++++++++++++++|++++|+
T Consensus       101 ~~~~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~  167 (380)
T PRK06225        101 RAFLSP-------------GDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPL  167 (380)
T ss_pred             HHhcCC-------------CCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCC
Confidence            876431             4689999999998888889999999999974  2347899999999999999999999999


Q ss_pred             CCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          213 TLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       213 ~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      ||||.+.   ++++|+++|+++      ++++++|++|+.+...  .+. .... .........++.|+++ .+.+.|++
T Consensus       168 NptG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~-~~~~-~~~~~i~~~s~SK~~g~~G~RiG~i  237 (380)
T PRK06225        168 NPLGSSYTEEEIKEFAEIARDN------DAFLLHDCTYRDFARE--HTL-AAEY-APEHTVTSYSFSKIFGMAGLRIGAV  237 (380)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHC------CcEEEEehhHHHHhcc--CCc-hhhc-CCCCEEEEeechhhcCCccceeEEE
Confidence            9999974   599999999999      9999999999754321  010 0111 1122344456789984 33457999


Q ss_pred             EEe
Q 017569          289 VWR  291 (369)
Q Consensus       289 ~~~  291 (369)
                      +.+
T Consensus       238 ~~~  240 (380)
T PRK06225        238 VAT  240 (380)
T ss_pred             ecC
Confidence            874

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.74  E-value=3.4e-16  Score=151.89  Aligned_cols=247  Identities=11%  Similarity=-0.053  Sum_probs=160.7

Q ss_pred             ChHHHHHHHHHHhccCCC---CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ++|.+.+++.+++.....   .+....+...+..++++++++++|.+.       .+++++|++++..++.++.+     
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~~g~~~~~~~l~~~~~-----  121 (385)
T PRK05958         54 RHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAER-------ALLFSSGYAANLAVLTALAG-----  121 (385)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECcHHHHHHHHHHHhCC-----
Confidence            457788888877754211   111122445566778888999998542       67777888888776655432     


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc---CcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~l  221 (369)
                              .+++|++++++|.++..++...|++++.+|.      .|++.+++.+++.   +.++++..+.|++|.+.++
T Consensus       122 --------~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l  187 (385)
T PRK05958        122 --------KGDLIVSDKLNHASLIDGARLSRARVRRYPH------NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPL  187 (385)
T ss_pred             --------CCCEEEEeCccCHHHHHHHHhcCCceEEeCC------CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCH
Confidence                    1468999999999999999999999888764      2788999998763   5566666788999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--ccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      ++|+++|+++      ++++++|++|+.+.++.......  ..+....-+.+..+.+|+++ +.| |+++.. ++.. +.
T Consensus       188 ~~i~~ia~~~------~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g~~~~~-~~~~-~~  257 (385)
T PRK05958        188 AELVALARRH------GAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-AAVLGS-ETLI-DY  257 (385)
T ss_pred             HHHHHHHHHh------CCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-cEEEcC-HHHH-HH
Confidence            9999999999      99999999997554321000000  11211122355677999985 445 666543 2222 12


Q ss_pred             cccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          300 LVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       300 ~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +... ..+.        ..++.+....++++++++.+...  .++  +..++.+++.+.|++.|
T Consensus       258 ~~~~~~~~~--------~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~~  311 (385)
T PRK05958        258 LINRARPFI--------FTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRALG  311 (385)
T ss_pred             HHHhCccce--------ecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcC
Confidence            1110 0111        11222233345566667666432  233  88889999999999876

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=1.4e-16  Score=153.37  Aligned_cols=244  Identities=15%  Similarity=0.126  Sum_probs=165.5

Q ss_pred             CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ++++.+.+.+.+++..+ ...|.. ++..++++.    +++++|.+.+    ..+++|+|+++++.+++.++.++     
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~----ia~~~~~~~~----~~I~~t~G~~~~i~~~~~~~~~~-----  104 (356)
T PRK04870         39 RLPAELRAELGERLAEVALNRYPD-PRAAALKAA----LRAAMGVPAG----ADVLLGNGSDELIQLLALACAKP-----  104 (356)
T ss_pred             CCCHHHHHHHHHHhhccccccCCC-CCHHHHHHH----HHHHhCcCCC----CcEEEcCCHHHHHHHHHHHhcCC-----
Confidence            45678889888887543 333432 455555555    6777787642    24889999999998887776442     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLL  224 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I  224 (369)
                              +++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++.+ ++++|++++|+||||.+.+.+++
T Consensus       105 --------gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~  175 (356)
T PRK04870        105 --------GATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD-FTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADV  175 (356)
T ss_pred             --------CCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHH
Confidence                    478999999999999999999999999999864 89999999999964 78999999999999999999999


Q ss_pred             HHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc
Q 017569          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH  303 (369)
Q Consensus       225 ~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  303 (369)
                      .++++..      ++++++|++|..+..    ......+. ... -.+..+..|++..+...|+++..+ +.+ ..+...
T Consensus       176 ~~i~~~~------~~~ii~De~y~~~~~----~~~~~~~~~~~~-vi~~~S~SK~~~~GlRiG~~i~~~-~~i-~~~~~~  242 (356)
T PRK04870        176 ERIIEAA------PGLVVVDEAYQPFAG----DSWLPRLARFPN-LLVMRTVSKLGLAGLRLGYLAGHP-AWI-AELDKV  242 (356)
T ss_pred             HHHHHHC------CCEEEEECCchhhcC----cchHHHHhhCCC-EEEEecchhhhhHHHhhhhhhCCH-HHH-HHHHHc
Confidence            9999887      889999999975432    11001111 112 244556889766566789987642 222 222110


Q ss_pred             cCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          304 INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       304 ~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .   .    .+    +-   ..+.+.++...+.. +-+++.  +..++.+++.+.|++++
T Consensus       243 ~---~----~~----~~---~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  288 (356)
T PRK04870        243 R---P----PY----NV---NVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALP  288 (356)
T ss_pred             c---C----CC----cC---CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            0   0    00    00   12223333333322 224444  67778888888888763

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.5e-16  Score=147.86  Aligned_cols=253  Identities=12%  Similarity=0.044  Sum_probs=175.2

Q ss_pred             ChHHHHHHHHHHhcc-C----C--CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINK-N----Y--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~-n----~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.+.++.-+-+.+ .    +  -+|+.-....++|..+.+...++||++..      -+=..+|+.||..++.++.++
T Consensus        38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a------nVQPhSGs~AN~av~~All~p  111 (413)
T COG0112          38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA------NVQPHSGSQANQAVYLALLQP  111 (413)
T ss_pred             CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc------ccCCCCchHHHHHHHHHHcCC
Confidence            346677766655432 1    1  11222235689999999999999999963      233458899999999888763


Q ss_pred             HHHHHHhcCCCCCCCeEEecC---CCcchHHHHHhhhc--ceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCC
Q 017569          141 WQQKRKEQGKPYDKPNIVTGA---NVQVCWEKFARYFE--VELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~---~~h~s~~~~~~~~G--~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (369)
                                   ++.|+-.+   -.|-+.-......|  .++...+++++++.+|.|++++.+.+ +|++|+  .|.+.
T Consensus       112 -------------GDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii--~G~Sa  176 (413)
T COG0112         112 -------------GDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLII--AGGSA  176 (413)
T ss_pred             -------------CCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEE--ECccc
Confidence                         45666443   34443332223333  35666777877799999999998876 788776  45555


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      .-..-|++++.++|++.      |.++.+|.|+-.+..  ....++..  ++.+|.+|.++||.+.+|.| |++++++.+
T Consensus       177 Y~r~id~~~~reIad~V------GA~L~~DmAHiaGLV--A~G~~p~P--~~~AdvVTtTTHKTlrGPrG-G~Il~~~ee  245 (413)
T COG0112         177 YSRPIDFKRFREIADEV------GAYLMVDMAHVAGLI--AGGVHPNP--LPHADVVTTTTHKTLRGPRG-GIILTNDEE  245 (413)
T ss_pred             cccccCHHHHHHHHHHh------CceEEehHHHHHHHH--hcccCCCC--CCccceEeCCcccCCCCCCc-eEEEeccHH
Confidence            55667999999999999      999999999765544  11111222  55799999999999999998 788777633


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +. ..+. .+-|       +.++|..-...+++...+++.....+|++.  +..+||+-|++.|.+.||
T Consensus       246 l~-kkin-~aVF-------Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~  305 (413)
T COG0112         246 LA-KKIN-SAVF-------PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGF  305 (413)
T ss_pred             HH-HHhh-hhcC-------CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            32 1110 0111       122344445567788889998888899888  999999999999999886

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=2e-16  Score=152.89  Aligned_cols=199  Identities=12%  Similarity=-0.018  Sum_probs=149.5

Q ss_pred             CChHHHHHHHHHHhcc---CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~---n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ++++.+.+++.+++..   ....| ..++...+++++.+|+.+.+|.+.+.   ..+++|+|+++++.+++.++.++   
T Consensus        39 ~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~---~~I~it~G~~~~l~~~~~~~~~~---  111 (368)
T PRK03317         39 PPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTV---ENVWAANGSNEILQQLLQAFGGP---  111 (368)
T ss_pred             CCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCCh---hhEEECCCHHHHHHHHHHHhcCC---
Confidence            4457788888877643   23333 23577889999999998887765422   35899999999999988887652   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHH
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~  222 (369)
                                ++.|+++.|+|..+...++..|++++.++.++ ++.+|++++++++.+ ++++|+++.|+||||.+.+.+
T Consensus       112 ----------gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~  180 (368)
T PRK03317        112 ----------GRTALGFVPSYSMHPIIARGTHTEWVEGPRAA-DFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLD  180 (368)
T ss_pred             ----------CCEEEEeCCChHHHHHHHHhcCCeeEEcccCC-CCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHH
Confidence                      47899999999999999999998888887654 489999999999974 688999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEE-EcCccCCC-CCCCeEEEEEe
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN-VSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~-~~~hK~l~-~p~g~g~l~~~  291 (369)
                      ++.++++..      ++++++|++|+.+...  ............-+.+. .+..|.++ .+...|+++..
T Consensus       181 ~l~~l~~~~------~~~lI~DE~y~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~  243 (368)
T PRK03317        181 DVEAILDAA------PGIVVVDEAYAEFRRS--GTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA  243 (368)
T ss_pred             HHHHHHHHC------CceEEEeCCchhhccc--CCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC
Confidence            999999999      9999999999875321  00001111101113443 36889875 56778888863

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.73  E-value=3.8e-16  Score=153.28  Aligned_cols=227  Identities=15%  Similarity=0.055  Sum_probs=155.2

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...+||+    .+++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|..    
T Consensus        57 p~~~~le~----~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~~-------------Gd~Vl~~~~~y~~t~~~  112 (418)
T TIGR01326        57 PTTDVLEQ----RIAALEGGVA-------ALAVASGQAAITYAILNLAQA-------------GDNIVSSSYLYGGTYNL  112 (418)
T ss_pred             hhHHHHHH----HHHHHhCCCe-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEECCCcHHHHHH
Confidence            44445554    4899999764       799999999999988877542             4688888887643    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+...|++++.++.+      |++++++++++++++|++.+++||+|.+.|+++|+++|+++      ++++++|++
T Consensus       113 ~~~~~~~~G~~v~~v~~~------d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~------~i~livD~t  180 (418)
T TIGR01326       113 FKHTLKRLGIEVRFVDPD------DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAH------GVPLIVDNT  180 (418)
T ss_pred             HHHHHHHcCcEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECC
Confidence            345567789998888742      78999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCC-CCC-----------
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSD-QPT-----------  313 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~-~~~-----------  313 (369)
                      |+.+..  ..+     + ..++|.++.+++||++++ ...|.+++...... ..... ...+... ..+           
T Consensus       181 ~~~~~~--~~~-----l-~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~-~~~~~-~~~~~~~~~~q~a~~~~~~~~~  250 (418)
T TIGR01326       181 FATPYL--CRP-----I-DHGADIVVHSATKYIGGHGTAIGGVIVDGGKFD-WANGR-FPLFTTPDPSYHGLVFTETFGN  250 (418)
T ss_pred             Cchhhc--CCc-----h-hcCCeEEEECccccccCCccceEEEEEeccccc-ccccc-cccccCCCCccccchhhhhhch
Confidence            975422  111     1 237899999999999763 44677777543221 11000 0000000 000           


Q ss_pred             -----------ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 -----------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 -----------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                                 ....|...  .+...|..++.+.  .+..+  +..++|..++++|.+.+.+++-+|
T Consensus       251 ~~~~~~~~~~~~~~~G~~~--~p~~a~~~~~~l~--tl~~R~~~~~~~a~~la~~L~~~~~V~~V~y  313 (418)
T TIGR01326       251 PAFIVKARVQLLRDLGAAL--SPFNAFLLLQGLE--TLSLRMERHVENALKVAEFLEAHPKVAWVNY  313 (418)
T ss_pred             hhHHHHHHHHHHHhcCCCC--CHHHHHHHHCCcc--cHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence                       00001111  2455666555553  34333  666899999999999988776544

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.73  E-value=5.8e-16  Score=148.70  Aligned_cols=248  Identities=11%  Similarity=-0.040  Sum_probs=160.2

Q ss_pred             ChHHHHHHHHHHhccCCCCCCC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .++.+.+++.++++.....+..   ..+...+..++++.+++++|.+.       .+++++|++++..++.++..     
T Consensus        31 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~~G~~~~~~~l~~~~~-----   98 (360)
T TIGR00858        31 SHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEA-------ALLFSSGYLANVGVISALVG-----   98 (360)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCC-------EEEECchHHHHHHHHHHhCC-----
Confidence            3477888888877542222111   12334455567777888888643       45556668887766655432     


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCCC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (369)
                              .+++|++++++|.++...++..|++++.++.      +|+++|++.+++    ++++|++..++|++|.+.|
T Consensus        99 --------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~  164 (360)
T TIGR00858        99 --------KGDLILSDALNHASLIDGCRLSGARVRRYRH------NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP  164 (360)
T ss_pred             --------CCCEEEEEccccHHHHHHHHhcCCceEEecC------CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC
Confidence                    1468999999999999999999999887763      478899998875    4678888888999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-c-cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-L-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      +++|.++|+++      ++++++|++|+.+..+..... . ...+.....+.+..+.+|+++. .| |+++.++ +.. .
T Consensus       165 ~~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G~~~~~~-~~~-~  234 (360)
T TIGR00858       165 LPQLVALAERY------GAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-AYVAGSQ-ALI-D  234 (360)
T ss_pred             HHHHHHHHHHc------CcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-cEEEcCH-HHH-H
Confidence            99999999999      999999999975443211000 0 0111123567888899999854 44 7776532 222 1


Q ss_pred             ccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          299 ELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       299 ~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+... ..+.        ..++.+....+++.++++.+..  ..++  +..++.+++.+.|+++|+
T Consensus       235 ~~~~~~~~~~--------~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~  290 (360)
T TIGR00858       235 YLINRARTLI--------FSTALPPAVAAAALAALELIQE--EPWRREKLLALIARLRAGLEALGF  290 (360)
T ss_pred             HHHHhCccce--------ecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHcCC
Confidence            21110 0110        1111222223444555654432  2233  889999999999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.73  E-value=2e-16  Score=152.72  Aligned_cols=259  Identities=19%  Similarity=0.104  Sum_probs=167.1

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..+.|....+. ++++.+.+++.+++.... .| ...+..+++++    +++.+|+++     ..+++|+|+++++.+++
T Consensus        30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~-~Y-p~~g~~~Lr~a----ia~~~~~~~-----~~I~vt~Gs~e~i~~~~   98 (366)
T PRK01533         30 SFVKLASNENPFGCSPRVLDELQKSWLDHA-LY-PDGGATTLRQT----IANKLHVKM-----EQVLCGSGLDEVIQIIS   98 (366)
T ss_pred             ceEEeCCCCCCCCCCHHHHHHHHHHHHhcC-cC-CCCCHHHHHHH----HHHHhCCCc-----ceEEECCCHHHHHHHHH
Confidence            33445444444 345778888777654422 22 23455566655    666778876     34899999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .++.++             ++.|++++|+|..+...++..|++++.||++.  +.+|+++|++++++++++|++++|+||
T Consensus        99 ~~l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~--~~~d~~~l~~~~~~~~~~v~i~~P~NP  163 (366)
T PRK01533         99 RAVLKA-------------GDNIVTAGATFPQYRHHAIIEGCEVKEVALNN--GVYDLDEISSVVDNDTKIVWICNPNNP  163 (366)
T ss_pred             HHhcCC-------------CCEEEEcCCcHHHHHHHHHHcCCEEEEeecCC--CCcCHHHHHHHhCcCCcEEEEeCCCCC
Confidence            887542             46899999999999999999999999999863  579999999999889999999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~  293 (369)
                      ||.+.+.+++.++++...+    +.++++|.+|..+...--.+.....+....--.+.-+.-|.++ .+...|+++.. +
T Consensus       164 TG~~~~~~~l~~l~~~~~~----~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~  238 (366)
T PRK01533        164 TGTYVNDRKLTQFIEGISE----NTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH-E  238 (366)
T ss_pred             CCCCcCHHHHHHHHHhCCC----CCEEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC-H
Confidence            9999887777777664311    3467789999754321000000001111111234445788865 67788988763 2


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHH-HH--HhhHHHHHHHHHHHhcC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIP-SF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~-~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.. ..+..   . ..   .    +   ....+.+.++...+....+. +.  ...+..+++.+.|+++|
T Consensus       239 ~~~-~~l~~---~-~~---~----~---~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g  293 (366)
T PRK01533        239 ELI-EKLNV---V-RL---P----F---NVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE  293 (366)
T ss_pred             HHH-HHHHH---h-cC---C----C---CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            222 22211   0 00   0    1   11345666666666443333 22  55666777778887765

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.73  E-value=2.5e-16  Score=152.07  Aligned_cols=253  Identities=11%  Similarity=0.046  Sum_probs=162.0

Q ss_pred             hHHHHHH-HHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           69 EPECDKL-VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~-~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+.+.+. +..+.-.. -.|..++...+||++    +++++|.+.       .+.|++|+.|+.++..+...        
T Consensus        49 T~aMs~~q~a~~~~GD-e~yag~~s~~~lE~~----va~~~G~~~-------av~v~sGT~Al~ll~~l~l~--------  108 (450)
T TIGR02618        49 TNAMSDKQWAGLMMGD-EAYAGSRNFYHLERT----VRELYGFKY-------VVPTHQGRGAENLLSQIAIK--------  108 (450)
T ss_pred             cHHHHHHHHHHhhhcc-hhhcCCCcHHHHHHH----HHHHHCCCe-------EEEcCCHHHHHHHHHHhCCC--------
Confidence            3555555 33333222 235677888899988    888999986       89999999997664322211        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHH-HhhhcceeEEEecc---------CCccccCHHHHHHHHhhc----CcEEEEeeCCC
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKF-ARYFEVELKEVKLE---------EGYYVMNPVKAVELVDEN----TICVAAILGST  213 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~-~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~  213 (369)
                           .+++|  +.++|+....+ +...|+.+.-++++         +.++.+|+++|+++|+++    +.+|.+..++|
T Consensus       109 -----pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N  181 (450)
T TIGR02618       109 -----PGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVN  181 (450)
T ss_pred             -----CcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecc
Confidence                 13444  77888665555 67778755555333         345899999999999863    34666777777


Q ss_pred             Cc-ccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-------CCcccc--cc-CCCCcEEEEcCccCC
Q 017569          214 LT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-------PDLEWD--FR-LPLVKSINVSGHKYG  279 (369)
Q Consensus       214 ~t-G~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-------~~~~~~--~~-~~~~Dsi~~~~hK~l  279 (369)
                      .. |.+   .++++|.++|+++      |+++|.|+|....-.-|+.       +....+  .. ...+|++++|+||-+
T Consensus       182 ~~GG~pvs~~~l~~I~elA~~~------Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~  255 (450)
T TIGR02618       182 LAGGQPVSMANMREVRELCEAH------GIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDC  255 (450)
T ss_pred             cCCCeeCCHHHHHHHHHHHHHc------CCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCC
Confidence            65 677   6799999999999      9999999997653221121       111101  11 447999999999999


Q ss_pred             CCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       280 ~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      ++|.| |+++++++++..+.-.....| ++ ..++   |...++...++..+|...-..-+.. +..+.++||.+.|++.
T Consensus       256 ~~~~G-G~l~~~d~~l~~k~r~~~~~~-eG-~~ty---Ggla~r~~~ala~gL~e~~~~~y~~-~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       256 LVNIG-GFLCMNDDEMFQSAKELVVVF-EG-MPSY---GGLAGRDMEAMAIGIREAVDYEYIE-HRVKQVRYLGDKLKAA  328 (450)
T ss_pred             CCCCc-eEEEeCCHHHHHHHHHHhhhc-CC-cccc---CchhhhhHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHC
Confidence            99986 788888876654321111223 11 1222   3333333444444555443321111 7777899999999998


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |.
T Consensus       329 Gv  330 (450)
T TIGR02618       329 GV  330 (450)
T ss_pred             CC
Confidence            76

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.73  E-value=1.3e-16  Score=154.04  Aligned_cols=216  Identities=13%  Similarity=-0.030  Sum_probs=151.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|...+||++    ++++.+ +       ..+++++|++|+..++.++..+             +++|+++.+.|+.+..
T Consensus        50 ~p~~~~Le~~----lA~l~~-~-------~~v~~~sG~~Ai~~~l~all~~-------------Gd~Vl~~~~~y~~~~~  104 (366)
T PRK07582         50 NPTWRALEAA----LGELEG-A-------EALVFPSGMAAITAVLRALLRP-------------GDTVVVPADGYYQVRA  104 (366)
T ss_pred             CccHHHHHHH----HHHHcC-C-------CEEEECCHHHHHHHHHHHhcCC-------------CCEEEEeCCCcHhHHH
Confidence            4566777776    666662 2       2677888889998887776432             4789999998877665


Q ss_pred             HH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .+    ...|++++.++.+++ +.        .+.+++++|+++.|+||+|.+.|+++|+++|+++      +++++||+
T Consensus       105 ~~~~~l~~~G~~v~~v~~~~~-~~--------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~------g~~lvVD~  169 (366)
T PRK07582        105 LAREYLAPLGVTVREAPTAGM-AE--------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAA------GALLVVDN  169 (366)
T ss_pred             HHHHHHhcCeEEEEEECCCCh-HH--------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHc------CCEEEEEC
Confidence            44    346999999987642 11        3346789999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|....   ..  .+.+   .++|.++.+++||+.++.|  .|+++.++++.. ..+.....+.+          .  ..
T Consensus       170 t~~~~~---~~--~p~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~-~~l~~~~~~~g----------~--~~  228 (366)
T PRK07582        170 TTATPL---GQ--RPLE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELM-AAVERWRLLAG----------A--IP  228 (366)
T ss_pred             CCCCcc---cc--Cchh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHH-HHHHHHHHHhC----------C--CC
Confidence            986321   11  1122   2689999999999988877  487776554332 22211111111          1  11


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCcccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      .++..|..++.+..-..+-.++.++|..++++|++.+.+++-+
T Consensus       229 ~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~  271 (366)
T PRK07582        229 GPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVR  271 (366)
T ss_pred             CHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            3566787777776543332288899999999999999877644

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.73  E-value=2.2e-16  Score=157.09  Aligned_cols=237  Identities=13%  Similarity=0.026  Sum_probs=160.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      |....+..+|++++.+++.+.+|....- +...+++|+|+++++.+.+.++.++             ++.|++++|+|..
T Consensus        82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v-~~~~Iiit~Ga~~al~~l~~~l~~p-------------Gd~Vlv~~P~Y~~  147 (468)
T PLN02450         82 FQDYHGLPAFKNALAEFMSEIRGNKVTF-DPNKLVLTAGATSANETLMFCLAEP-------------GDAFLLPTPYYPG  147 (468)
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCCc-ChHHeEEccChHHHHHHHHHHhCCC-------------CCEEEECCCCCCc
Confidence            4445578899999999999887743110 1135899999999999888887653             5789999999999


Q ss_pred             HHHHHh-hhcceeEEEecc-CCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhcc
Q 017569          167 WEKFAR-YFEVELKEVKLE-EGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEET  235 (369)
Q Consensus       167 ~~~~~~-~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~  235 (369)
                      +...+. ..|++++.||++ ++++.+|+++|++++.+      ++++|++++|+||||.+-+   +++|.++|+++    
T Consensus       148 ~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~----  223 (468)
T PLN02450        148 FDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAK----  223 (468)
T ss_pred             hHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC----
Confidence            988777 589999999986 35688999999998865      6889999999999999854   67788889999    


Q ss_pred             CCCceEEeecccccccccccCCCc-c-ccc-c---------CCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCccccccc
Q 017569          236 GWDTPIHVDAASGGFIAPFLYPDL-E-WDF-R---------LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~-~---------~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                        ++|+++|.+|+...+  -.+.. . ... .         ..++ .+..+.-|.++ .+...|+++..++... ..+..
T Consensus       224 --~~~iI~DE~Y~~~~f--~~~~~~s~l~~~~~~~~~~~~~~~~v-i~l~S~SK~~~l~GlRiG~li~~~~~l~-~~~~~  297 (468)
T PLN02450        224 --NIHLISDEIYSGTVF--DSPGFVSVMEVLKDRKLENTDVSNRV-HIVYSLSKDLGLPGFRVGAIYSNDEMVV-SAATK  297 (468)
T ss_pred             --CcEEEEEcccccccc--CCCCcccHHHHhhhcccccCCCCCcE-EEEEeccccCCCCCccEEEEEECCHHHH-HHHHH
Confidence              999999999987543  11110 0 000 0         0111 23445788764 7899999987543222 22111


Q ss_pred             ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-----HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-----IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 ~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-----~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ...+           +.   ...+.+.++...+....     +++.  +..+..+.+.+.|++.|.
T Consensus       298 ~~~~-----------~~---~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi  349 (468)
T PLN02450        298 MSSF-----------GL---VSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGI  349 (468)
T ss_pred             Hhhc-----------CC---CCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1011           00   01334445555554332     2322  566666677888887764

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=6.5e-16  Score=149.99  Aligned_cols=255  Identities=11%  Similarity=-0.043  Sum_probs=167.0

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|....+. ++++.+.+.+.+..  ....| ..++..+    +++.+++++|+++     ..+++|+|+++++.+++
T Consensus        53 ~~i~l~~n~~p~~~~~~v~~a~~~~~--~~~~Y-p~~~~~~----lr~~ia~~~~~~~-----~~I~~t~Ga~~~i~~~~  120 (380)
T PLN03026         53 DIVKLDANENPYGPPPEVLEALGNMK--FPYVY-PDPESRR----LRAALAEDSGLES-----ENILVGCGADELIDLLM  120 (380)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHhhH--hhccC-CCCCHHH----HHHHHHHHhCcCh-----hhEEEcCCHHHHHHHHH
Confidence            33455554433 34566777665421  11122 2234444    4455788888875     24899999999998888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHH-hhcCcEEEEeeCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DENTICVAAILGST  213 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i-~~~~~~v~~~~~~~  213 (369)
                      .++.++             +++|++++|+|..+...++..|++++.+|.+++ +.+|+++|++++ ++++++|++++|+|
T Consensus       121 ~~~~~~-------------gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~~v~l~~P~N  186 (380)
T PLN03026        121 RCVLDP-------------GDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPD-FSLDVPRIVEAVETHKPKLLFLTSPNN  186 (380)
T ss_pred             HHhcCC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEeecCCC-CCcCHHHHHHHHhccCCcEEEEeCCCC
Confidence            776442             468999999999898889999999999998754 899999999999 67899999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                      |||.+.+.+++.++++ .      .+++++|++|..+..  . ......+....-..+.-+..|.++ .+.+.|+++...
T Consensus       187 PTG~~~~~~~l~~l~~-~------~~~vi~DeaY~~~~~--~-~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~  256 (380)
T PLN03026        187 PDGSIISDDDLLKILE-L------PILVVLDEAYIEFST--Q-ESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL  256 (380)
T ss_pred             CCCCCCCHHHHHHHHh-c------CCEEEEECcchhhcC--C-cchHHHHHhCCCEEEEecchHhhcCccccceeeecCH
Confidence            9999999999999996 4      589999999976432  1 110011111111244556778875 677889988632


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH-HHH--HhhHHHHHHHHHHHhcCCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI-PSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~-~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                       +.+ ..+.....       .+    +   ...+.+.++...+....+ ++.  +..+..+++.+.|+++|++
T Consensus       257 -~~i-~~l~~~~~-------~~----~---~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  313 (380)
T PLN03026        257 -SII-EYLWRAKQ-------PY----N---VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFL  313 (380)
T ss_pred             -HHH-HHHHHhcC-------CC----C---CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence             222 22111000       01    1   113344444555533333 333  5667777888999888754

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.72  E-value=1.6e-16  Score=153.43  Aligned_cols=214  Identities=15%  Similarity=0.097  Sum_probs=151.4

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |...+||+.    ++++.|.+.       .++++||++|+..++ .+..             .+++|+++.+.|..    
T Consensus        52 pt~~~le~~----la~l~g~~~-------~~~~~sG~~ai~~~~-~ll~-------------~Gd~Vl~~~~~y~~t~~~  106 (366)
T PRK08247         52 PTRGVLEQA----IADLEGGDQ-------GFACSSGMAAIQLVM-SLFR-------------SGDELIVSSDLYGGTYRL  106 (366)
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEEcCHHHHHHHHH-HHhC-------------CCCEEEEecCCcCcHHHH
Confidence            455566655    999999975       688889999987654 3322             14689999988875    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +...+...|++++.++.      .|+++++++++++|++|++++|+||+|.+.++++|+++|+++      ++++++|++
T Consensus       107 ~~~~~~~~G~~v~~vd~------~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~------g~~lIvD~t  174 (366)
T PRK08247        107 FEEHWKKWNVRFVYVNT------ASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKH------GLLLIVDNT  174 (366)
T ss_pred             HHHHhhccCceEEEECC------CCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHc------CCEEEEECC
Confidence            34455668988888864      278999999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      |+..+.  ..|   .   ..++|.++.|..|+++++.+  .|+++.++++.. ..+.....+.+          .  ...
T Consensus       175 ~~~~~~--~~p---~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~-~~~~~~~~~~g----------~--~~s  233 (366)
T PRK08247        175 FYTPVL--QRP---L---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELC-ERLAYYQNAAG----------A--VLS  233 (366)
T ss_pred             Cccccc--cCc---h---hcCCcEEEeecceeccCCCceeeeEEecChHHHH-HHHHHHHHhcC----------C--CCC
Confidence            965332  111   1   13789999999999987654  466665443322 11111001111          0  112


Q ss_pred             HHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          325 IIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      ...+|..++.+.  .+..+  +..++++.+++.|++.+.++.
T Consensus       234 ~~~a~l~~~~l~--tl~~r~~~~~~~a~~l~~~L~~~p~v~~  273 (366)
T PRK08247        234 PFDSWLLIRGMK--TLALRMRQHEENAKAIAAFLNEQPGVTD  273 (366)
T ss_pred             hHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence            455677766554  23333  789999999999999876654

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.72  E-value=3.3e-16  Score=154.57  Aligned_cols=258  Identities=13%  Similarity=0.004  Sum_probs=168.5

Q ss_pred             cccccccCCCh-HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           59 NLASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        59 ~l~~~~~~~~~-~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +|+.+.|.+.+ |.+.+.+.++.. ....|....+..++++.+.+|+.+.++.+      ..+++|+|+++++.+++.++
T Consensus        89 ~L~~g~p~~~~~p~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~------~~Iiit~G~~~al~~~~~~l  161 (431)
T PRK15481         89 DLAGGNPDPQRLPDLSRYFARLSR-TPRLYGDAPVSPELHAWAARWLRDDCPVA------FEIDLTSGAIDAIERLLCAH  161 (431)
T ss_pred             hhhcCCCChhHhHHHHHHHHHhhh-hhhhcCCcCCCHHHHHHHHHHHhhccCCc------CeEEEecCcHHHHHHHHHHh
Confidence            34444443322 445555555432 23334444567788888777766543321      24899999999999998887


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEe-eCCCCcc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI-LGSTLTG  216 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~-~~~~~tG  216 (369)
                      .++             ++.|++++|+|..+...++..|++++.||++++  .+|+++|++++++++++++++ +|+||||
T Consensus       162 ~~p-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--g~~~~~l~~~~~~~~k~i~~~p~p~NPTG  226 (431)
T PRK15481        162 LLP-------------GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE--GMQPEKLERALAQGARAVILTPRAHNPTG  226 (431)
T ss_pred             CCC-------------CCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC--CCCHHHHHHHHhcCCCEEEECCCCCCCCC
Confidence            653             478999999999999999999999999999764  489999999998888888887 9999999


Q ss_pred             cCCCHH---HHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          217 EFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       217 ~~~~l~---~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      .+.+.+   +|.++|++++     ++|+++|.+|+.+...   +... ......+ -.+.-+..|.++....+|+++..+
T Consensus       227 ~~~s~~~~~~l~~la~~~~-----~~~ii~De~Y~~~~~~---~~~~~~~~~~~~-vi~~~SfSK~~~~GlRiG~~i~~~  297 (431)
T PRK15481        227 CSLSARRAAALRNLLARYP-----QVLVIIDDHFALLSSS---PYHSVIPQTTQR-WALIRSVSKALGPDLRLAFVASDS  297 (431)
T ss_pred             ccCCHHHHHHHHHHHHhcC-----CceEEecCchhhhccC---CCCCCCcCCCCC-EEEEeeeccccCCCceeEEEeCCH
Confidence            997765   8889988763     7999999999875431   1101 1111111 134445789887778889887632


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH----HHH--HhhHHHHHHHHHHHhcCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI----PSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~----~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       +.. ..+.....+.     ..       +...+.++++...+....+    .+.  ...+..+++.+.|++.|+
T Consensus       298 -~~~-~~~~~~~~~~-----~~-------~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~  358 (431)
T PRK15481        298 -ATS-ARLRLRLNSG-----TQ-------WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGI  358 (431)
T ss_pred             -HHH-HHHHHHHhcc-----cc-------CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             222 2221100000     00       1124555555555543333    333  566667778888887654

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.72  E-value=4.9e-16  Score=148.92  Aligned_cols=262  Identities=12%  Similarity=0.049  Sum_probs=157.0

Q ss_pred             ChHHHHHHHHHHhccCC--CCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~--~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .+|.+.+++...+.+..  +.+     .......++|.-+.+...++||++++.  -...+=..+|+.||+.++.++.++
T Consensus        32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~--w~anvqp~SGs~An~av~~aLl~p  109 (399)
T PF00464_consen   32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKE--WYANVQPHSGSQANLAVYMALLKP  109 (399)
T ss_dssp             --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTT--EEEE---SSHHHHHHHHHHHHT-T
T ss_pred             cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCccc--ceEEeecCCchHHHHHHHHHHHhh
Confidence            45677777776654321  111     112346789999999999999999521  011234458999999999888764


Q ss_pred             HHHHHHhcCCCCCCCeEEecC---CCcchHHHHHhh-------hcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEe
Q 017569          141 WQQKRKEQGKPYDKPNIVTGA---NVQVCWEKFARY-------FEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAI  209 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~---~~h~s~~~~~~~-------~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~  209 (369)
                                   +++|+.-+   -.|.+.......       ...++...+++++++.+|.+++++.+.+ +|++|++-
T Consensus       110 -------------GD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G  176 (399)
T PF00464_consen  110 -------------GDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICG  176 (399)
T ss_dssp             -------------T-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE
T ss_pred             -------------cCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEEC
Confidence                         46776543   345543333222       3356777888877799999999998876 78888754


Q ss_pred             eCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       210 ~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      ..+.  -...|++++.++|++.      |.++++|+++-.+.+  .....+..  ++.+|.++.++||.+.+|.| |+++
T Consensus       177 ~S~y--~~~~d~~~~reIad~v------ga~l~~D~sH~~GLI--a~g~~~~P--~~~ADvvt~sThKtl~GPrg-giI~  243 (399)
T PF00464_consen  177 ASSY--PRPIDFKRFREIADEV------GAYLMADISHIAGLI--AGGLFPNP--FPYADVVTGSTHKTLRGPRG-GIIL  243 (399)
T ss_dssp             -SST--SS---HHHHHHHHHHT------T-EEEEE-TTTHHHH--HTTSS--G--CCTSSEEEEESSGGG-SSS--EEEE
T ss_pred             chhc--cCccCHHHHHHHHHhc------CcEEEecccccccce--ehheecCc--cccceEEEeeccccccccCc-eEEE
Confidence            4433  3456899999999999      999999999765554  22222222  34699999999999999987 7888


Q ss_pred             EeCCCCc--------ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          290 WRTKDDL--------PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       290 ~~~~~~~--------~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +++...-        ...+....+..    .-+.++++.....++++..+|+......+.+.  +..+||+.|++.|.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~l~~~I~~a----vfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~  319 (399)
T PF00464_consen  244 TNKGSKNVDKKGKEIDEELAEKIDSA----VFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER  319 (399)
T ss_dssp             ES-SEEEE-TTS-EEEHHHHHHHHHH----HTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EcCCccccCCcccccHHHHHHHhccc----cCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8721100        00110000000    01223455556668888889998766666666  9999999999999998


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      |+
T Consensus       320 G~  321 (399)
T PF00464_consen  320 GF  321 (399)
T ss_dssp             T-
T ss_pred             Cc
Confidence            86

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK15029 arginine decarboxylase; Provisional

Probab=99.72  E-value=3e-16  Score=161.09  Aligned_cols=228  Identities=12%  Similarity=-0.010  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcc
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV  176 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~  176 (369)
                      -++..+..+++||++..      -.+++|+|.+|..++.++..+             +++|+++.+.|-|+..++.+.|+
T Consensus       207 I~eAq~~aA~~fgA~~t------~FlvNGST~gn~a~i~a~~~~-------------gd~Vlv~RN~HKSv~~al~L~ga  267 (755)
T PRK15029        207 FGESEKYAARVFGADRS------WSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLILTGA  267 (755)
T ss_pred             HHHHHHHHHHHhCCCcE------EEEeCChhHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCC
Confidence            34566779999999863      688889999998888877653             57999999999999999999999


Q ss_pred             eeEEEeccCCc----cccC-----HHHHHHHHhhcC--c--------EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCC
Q 017569          177 ELKEVKLEEGY----YVMN-----PVKAVELVDENT--I--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (369)
Q Consensus       177 ~v~~v~~~~~~----~~~d-----~~~L~~~i~~~~--~--------~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~  237 (369)
                      .+++++..-+.    +.++     ++.++++|.+.+  +        ++++++||.. |.+-|+++|+++|+++      
T Consensus       268 ~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~-Gv~~di~~I~~~~h~~------  340 (755)
T PRK15029        268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD-GVCYNAKEAQDLLEKT------  340 (755)
T ss_pred             eEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCc-ceeeCHHHHHHHHHhc------
Confidence            99999754211    2344     999999997532  3        8889998655 9999999999999999      


Q ss_pred             CceEEeecccccccccccCCCcc--ccc-----cCCCCc-EEEEcCccCCCCCCCeEEEEEeCCC-Ccc-cccccccCcc
Q 017569          238 DTPIHVDAASGGFIAPFLYPDLE--WDF-----RLPLVK-SINVSGHKYGLVYAGVGWVVWRTKD-DLP-DELVFHINYL  307 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~--~~~-----~~~~~D-si~~~~hK~l~~p~g~g~l~~~~~~-~~~-~~~~~~~~y~  307 (369)
                      +++++||+|+|+...  +.|..+  ..+     ...++| .++-|+||.+.+-..++++.+++.. .+. ..+.......
T Consensus       341 ~~~llvDEAhGah~~--F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~  418 (755)
T PRK15029        341 SDRLHFDEAWYGYAR--FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH  418 (755)
T ss_pred             CCeEEEECccccccc--cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHH
Confidence            999999999998764  344332  122     115788 8889999999998888999987642 121 1221111222


Q ss_pred             CCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          308 GSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       308 ~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                      ++        .|.+....+++-.+.+.+.. .|...+ +.++.+..++++|++.+
T Consensus       419 qS--------TSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        419 AT--------TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             cC--------CCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            21        25555667788888888865 688877 99999999999998764

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.72  E-value=9.5e-16  Score=148.60  Aligned_cols=185  Identities=12%  Similarity=0.078  Sum_probs=135.6

Q ss_pred             HHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCC
Q 017569           71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK  150 (369)
Q Consensus        71 ~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~  150 (369)
                      ...+++.+.+..+... ..    ..+.+++.+++++++|.+.       .++++||+.|+.+++.++.-           
T Consensus        12 ~~~~~~~~~l~~~~~~-g~----~~~~~~~e~~la~~~g~~~-------~v~~~sgt~al~~~l~~~~~-----------   68 (375)
T PRK11706         12 TELDYIQQAMSSGKLC-GD----GGFTRRCQQWLEQRFGSAK-------VLLTPSCTAALEMAALLLDI-----------   68 (375)
T ss_pred             HHHHHHHHHHHcCCcc-CC----CHHHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHHHhCC-----------
Confidence            3456666777654332 11    2344556666888888864       89999999999887765411           


Q ss_pred             CCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH
Q 017569          151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK  230 (369)
Q Consensus       151 ~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~  230 (369)
                       ..+++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|+++   +++|...++++|.++|++
T Consensus        69 -~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~  144 (375)
T PRK11706         69 -QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKK  144 (375)
T ss_pred             -CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHH
Confidence             1247999999999999999999999999999988768999999999999999988865   468999999999999999


Q ss_pred             hhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeCCCC
Q 017569          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~~~~  295 (369)
                      +      ++++++|+||+.+..  ....   ... ...|.-++|.|  |.+.++.| |++++.+++.
T Consensus       145 ~------~i~vIeD~a~a~g~~--~~~~---~~g-~~~~~~~~Sf~~~K~l~~g~g-G~~~~~~~~~  198 (375)
T PRK11706        145 H------NLFVVEDAAQGVMST--YKGR---ALG-TIGHIGCFSFHETKNYTAGEG-GALLINDPAL  198 (375)
T ss_pred             c------CCEEEEECccccccc--cCCe---eee-cCcCEEEEeCCCCccccccCC-eEEEECCHHH
Confidence            9      999999999986542  1111   111 12355556666  99865444 5555655433

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.71  E-value=2.8e-15  Score=132.50  Aligned_cols=228  Identities=14%  Similarity=0.036  Sum_probs=178.1

Q ss_pred             HHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEE
Q 017569          101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE  180 (369)
Q Consensus       101 ~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~  180 (369)
                      .+.+++++|+|.       .-+|.|+.+|-+.++.+++.+             ++.|++....||+..-++...|+++..
T Consensus        67 ~~dlaeFlg~D~-------~R~t~GARe~KfavMhal~~~-------------gd~vV~D~~aHYttyvAAEragl~v~e  126 (382)
T COG1103          67 LEDLAEFLGMDE-------VRVTAGAREAKFAVMHALCKE-------------GDWVVVDSLAHYTTYVAAERAGLNVAE  126 (382)
T ss_pred             HHHHHHHhCCce-------eeecccchhhHHHHHHHhccC-------------CCEEEEcCcchHHHHHHHHhcCCeEEe
Confidence            334999999996       789999999999998888663             578999999999999999999999999


Q ss_pred             EeccC-CccccCHHHHHHHHhh-------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          181 VKLEE-GYYVMNPVKAVELVDE-------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       181 v~~~~-~~~~~d~~~L~~~i~~-------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      ||-.. ..+.++++...+.|++       .+.+.+++++....|.+.|.+.++++|+++      ++++++.+||.-+-+
T Consensus       127 Vp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~------gvPlllN~AYt~Grm  200 (382)
T COG1103         127 VPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREY------GVPLLLNCAYTVGRM  200 (382)
T ss_pred             cCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHc------CCceEeecceeeccc
Confidence            99643 4599999998888864       267788999999999999999999999999      999999999987766


Q ss_pred             cccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHH
Q 017569          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (369)
Q Consensus       253 ~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l  332 (369)
                      |       ....-.++|+++.|+||-+-+...+|++-++.. +....+..+-.+...-. --.+.||-.+..+..+-+++
T Consensus       201 p-------vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE-~ae~V~r~Sg~~~~~KE-vellGCT~rGapivTlmASf  271 (382)
T COG1103         201 P-------VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEE-WAEIVLRRSGRAFPKKE-VELLGCTVRGAPIVTLMASF  271 (382)
T ss_pred             c-------ccccccCCCEEEecCccchhccCCeeEEeehhH-HHHHHHhhcccccccce-eeeecccccCchHHHHHhcC
Confidence            3       333355899999999999988888999988643 33222222212111111 11256888787777776666


Q ss_pred             HHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCcc
Q 017569          333 IRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       333 ~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      -.. .+-+..+ .-.+.|++|...|+++|-|++
T Consensus       272 P~V-~eRVkrWdeEv~kaR~fv~elEkigg~~q  303 (382)
T COG1103         272 PHV-VERVKRWDEEVEKARWFVAELEKIGGVKQ  303 (382)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            655 4556666 889999999999999986554

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.71  E-value=3.5e-16  Score=155.82  Aligned_cols=215  Identities=13%  Similarity=0.046  Sum_probs=145.4

Q ss_pred             cccccccCCCh-HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHH-HHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           59 NLASFVTTWME-PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIA-HLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        59 ~l~~~~~~~~~-~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la-~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      +++.+.|..++ +.+.+++..... +  +|....+..++.+++.+++. +..+..........+++|+|+++|+.+++.+
T Consensus       104 ~l~~g~p~~~~~~~v~e~~~~~~~-~--~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~a  180 (527)
T PRK09275        104 SYVRDQLGFDADEFVYELVDGIIG-D--NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDS  180 (527)
T ss_pred             hhcCCCCCCCCCHHHHHHHHHHhc-C--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHH
Confidence            55666666544 556775544432 2  36666788999999888554 4333321111123589999999999998886


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec--cC-CccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EE-GYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +....        .-..+++|+++.|+|..|...+++.|.+++.+++  ++ ++|.+|+++|++++++++++|++++|+|
T Consensus       181 L~~~~--------ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~N  252 (527)
T PRK09275        181 LKENG--------LLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSN  252 (527)
T ss_pred             Hhhhh--------cCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcC
Confidence            43210        0012579999999999999999888766555544  43 4589999999999999999999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCC-CCCCCeEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAGVGWV  288 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l-~~p~g~g~l  288 (369)
                      |||.+-+   +++|+++|++++.    ++||++|.+|+.+...+.     ..+. ...--.+..|..|.+ ++++..|++
T Consensus       253 PTG~v~s~e~l~~I~~ia~~~~~----~l~II~DEvY~~f~~~~~-----s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i  323 (527)
T PRK09275        253 PPSVAMSDESLEKIADIVNEKRP----DLMIITDDVYGTFVDDFR-----SLFAVLPYNTILVYSFSKYFGATGWRLGVI  323 (527)
T ss_pred             CcCCCCCHHHHHHHHHHHHhcCC----CcEEEECCCChhhccccc-----CHHHhCCCCEEEEeehhhhccCcHhHHhhh
Confidence            9999965   7788888854311    899999999987542111     1111 111112333466776 578999999


Q ss_pred             EEeCC
Q 017569          289 VWRTK  293 (369)
Q Consensus       289 ~~~~~  293 (369)
                      +..+.
T Consensus       324 ~~~~~  328 (527)
T PRK09275        324 ALHED  328 (527)
T ss_pred             hcCch
Confidence            87543

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.71  E-value=6.3e-16  Score=150.98  Aligned_cols=215  Identities=13%  Similarity=0.026  Sum_probs=150.2

Q ss_pred             Ccccccccc---CC-Ch--HHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           57 RLNLASFVT---TW-ME--PECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        57 ~~~l~~~~~---~~-~~--~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      .++|+.+.+   .. .+  +.+.+++.+++... ...|....|..++++++.+|+.+..+...+. +...+++|+|+++|
T Consensus        28 ~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~-~~i~v~iT~Ga~~a  106 (396)
T PRK09257         28 KVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAA-GRVATVQTPGGTGA  106 (396)
T ss_pred             cEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCccccc-CeEEEEecCCccHH
Confidence            366666643   11 12  56778877776542 3356667799999999999987654432111 11124899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHhh---cCcE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE---NTIC  205 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~---~~~~  205 (369)
                      +.+++.++..-           ..+++|++++|+|+.+..+++..|++++.+|+ +++++.+|+++|++++..   ++++
T Consensus       107 l~~~~~~l~~~-----------~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~  175 (396)
T PRK09257        107 LRVGADFLKRA-----------FPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVV  175 (396)
T ss_pred             HHHHHHHHHHh-----------CCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEE
Confidence            99988665320           01479999999999999999999999999998 444589999999998863   3566


Q ss_pred             EEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc--cccCCCCcEE-EEcCccCC
Q 017569          206 VAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW--DFRLPLVKSI-NVSGHKYG  279 (369)
Q Consensus       206 v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~~~~~~Dsi-~~~~hK~l  279 (369)
                      +++++++||||.+.   .+++|+++|+++      ++++++|.+|..+... ..+....  .+.-..-..+ ..|.-|.+
T Consensus       176 ~i~~~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~  248 (396)
T PRK09257        176 LLHGCCHNPTGADLTPEQWDELAELLKER------GLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLVASSFSKNF  248 (396)
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEeccccccccc-hHHHHHHHHHHHhcCCcEEEEEEcCCcC
Confidence            77799999999984   478889999999      9999999999875421 0000000  1110111233 45688988


Q ss_pred             CC-CCCeEEEEE
Q 017569          280 LV-YAGVGWVVW  290 (369)
Q Consensus       280 ~~-p~g~g~l~~  290 (369)
                      +. ++++|++++
T Consensus       249 ~~~GlRiG~~~~  260 (396)
T PRK09257        249 GLYGERVGALSV  260 (396)
T ss_pred             ccccccceeEEE
Confidence            75 789999974

>PRK08175 aminotransferase; Validated

Probab=99.71  E-value=4.6e-15  Score=144.82  Aligned_cols=209  Identities=12%  Similarity=0.010  Sum_probs=147.6

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ..++|+.+.|... ++.+.+.+.+.+.. ....|....+..++++++.+++.+.+|.+.+.  ....++|+|+++++.+.
T Consensus        30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~i~~t~G~~~~l~~~  107 (395)
T PRK08175         30 DIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDP--ESEAIVTIGSKEGLAHL  107 (395)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEccCcHHHHHHH
Confidence            3345555545432 34455555554432 33455556688999999999999887875421  12488999999999887


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEee
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAIL  210 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~  210 (369)
                      +.++.++             +++|++++++|..+...++..|++++.+|++++  ..+.++|+++++.   ++++|+++.
T Consensus       108 ~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~l~~~l~~~~~~~~~v~i~~  172 (395)
T PRK08175        108 MLATLDH-------------GDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG--VDFFNELERAIRESYPKPKMMILGF  172 (395)
T ss_pred             HHHhCCC-------------CCEEEEcCCCCcchHHHHHHcCCeEEEEecccC--CCcHHHHHHHHhhccCCceEEEEeC
Confidence            7665432             468999999999988888999999999999754  3357888888863   688999999


Q ss_pred             CCCCcccCCCH---HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCC---CCcEEEEcCccCCC-CC
Q 017569          211 GSTLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLP---LVKSINVSGHKYGL-VY  282 (369)
Q Consensus       211 ~~~~tG~~~~l---~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~---~~Dsi~~~~hK~l~-~p  282 (369)
                      |+||||.+-+.   ++|+++|+++      ++++++|.+|+.+..   .......+ ...   ....++.+.-|.++ ..
T Consensus       173 p~NPtG~~~~~~~~~~i~~~a~~~------~i~ii~De~y~~l~~---~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pG  243 (395)
T PRK08175        173 PSNPTAQCVELEFFEKVVALAKRY------DVLVVHDLAYADIVY---DGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAG  243 (395)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEecchHhhcc---CCCCCcchhcCCCcccCEEEEeeccccccCcc
Confidence            99999998665   7899999999      999999999986543   11101111 111   12234567889974 44


Q ss_pred             CCeEEEEE
Q 017569          283 AGVGWVVW  290 (369)
Q Consensus       283 ~g~g~l~~  290 (369)
                      .++|+++.
T Consensus       244 lRiG~~~~  251 (395)
T PRK08175        244 WRIGFMVG  251 (395)
T ss_pred             hhheeeeC
Confidence            67898875

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.71  E-value=1.8e-15  Score=149.09  Aligned_cols=177  Identities=12%  Similarity=-0.041  Sum_probs=129.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      ++...+||++    +++++|.+.       .+++++||+|+..++.++...+..+.   + -..+++||++.++|.++..
T Consensus        62 G~~~~~fe~~----lA~~~g~~~-------~v~~~sGt~al~~aL~al~~~~~~~~---~-~~pGd~VIv~~~t~~a~~~  126 (438)
T PRK15407         62 GRFNDAFEKK----LAEFLGVRY-------ALLVNSGSSANLLAFSALTSPKLGDR---A-LKPGDEVITVAAGFPTTVN  126 (438)
T ss_pred             ChhHHHHHHH----HHHHhCCCe-------EEEECCHHHHHHHHHHHHhhcccccc---C-CCCCCEEEECCCCcHHHHH
Confidence            3445666665    888888864       78999999999999887643210000   0 0124689999999999999


Q ss_pred             HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          170 FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       170 ~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      ++...|+.++.++++.+++.+|++++++++++++++|++++   +.|.+.++++|.++|+++      ++++++|+|++.
T Consensus       127 ~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~---~~G~p~dl~~I~~la~~~------gi~vIeDaa~a~  197 (438)
T PRK15407        127 PIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAH---TLGNPFDLAAVKAFCDKH------NLWLIEDNCDAL  197 (438)
T ss_pred             HHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeC---CCCChhhHHHHHHHHHHC------CCEEEEECccch
Confidence            99999999999999865689999999999999999888765   468888999999999999      999999999987


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      +..  ......-.  ...+-.+++...|-+.+..| |+++++++++
T Consensus       198 G~~--~~g~~~G~--~gd~~~fSf~~~k~~~~geG-G~l~t~d~~l  238 (438)
T PRK15407        198 GST--YDGRMTGT--FGDIATLSFYPAHHITMGEG-GAVFTNDPLL  238 (438)
T ss_pred             hhh--cCCeeeec--cCceEEEeCCCCCCccccCc-eEEEECCHHH
Confidence            654  11111111  11233444445566665555 8888877644

>PLN02672 methionine S-methyltransferase

Probab=99.71  E-value=6.9e-16  Score=162.97  Aligned_cols=213  Identities=9%  Similarity=0.094  Sum_probs=156.0

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      +++.++|+...+.. +++.+.+++.+++.....    +.+..++.+++++|+++.+|++.+.  ..++++++|+++++..
T Consensus       696 g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~----s~g~pdlr~aLa~~la~~~Gv~~d~--~e~IIvt~Gs~elL~l  769 (1082)
T PLN02672        696 ESSLIHMDVDESFLPVPSAVKASIFESFVRQNI----SESETDPRPSILQFIKSNYGFPTDS--CTEFVYGDTSLALFNK  769 (1082)
T ss_pred             CCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCC----CCCChHHHHHHHHHHHHHhCcCCCC--CCEEEEeCCHHHHHHH
Confidence            45556676666553 457788888877644321    2234557889999999999998631  1357888888888878


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh-cCcEEEEee
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE-NTICVAAIL  210 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~-~~~~v~~~~  210 (369)
                      ++.++.++             ++.|+++.|+|+.+...++..|++++.||+++ +++.+|+++|++++++ +++.|+++.
T Consensus       770 ll~aLl~p-------------GD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~n  836 (1082)
T PLN02672        770 LVLCCVQE-------------GGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISG  836 (1082)
T ss_pred             HHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEEC
Confidence            87877653             47999999999999999999999999999974 4699999999999976 356889999


Q ss_pred             CC-CCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-ccccc-----CCC----CcEEEE-c-
Q 017569          211 GS-TLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFR-----LPL----VKSINV-S-  274 (369)
Q Consensus       211 ~~-~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~-----~~~----~Dsi~~-~-  274 (369)
                      |+ ||||.+   +.+++|.++|+++      +++|++|.+|+...+.  .+.. ...+.     ...    ...+.+ + 
T Consensus       837 PnhNPTG~v~S~eeLe~Llela~k~------di~VIsDEaYsdL~Fd--~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf  908 (1082)
T PLN02672        837 PTINPTGLLYSNSEIEEILSVCAKY------GARVIIDTSFSGLEYD--TSGWGGWDLKSILSRLKSSNPSFAVALLGGL  908 (1082)
T ss_pred             cCCCCcCccCCHHHHHHHHHHHHHc------CCEEEEeCCCCccccC--CCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence            98 999998   4588889999999      9999999999865441  1110 00010     000    123333 3 


Q ss_pred             CccCCCCCCCeEEEEEeCC
Q 017569          275 GHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       275 ~hK~l~~p~g~g~l~~~~~  293 (369)
                      +.||+.+++.+|+++..++
T Consensus       909 SKkf~lpGLRIGylIap~~  927 (1082)
T PLN02672        909 STELLSGGHEFGFLALNDS  927 (1082)
T ss_pred             HHhhccHHHHheeEEeCCH
Confidence            4588888899999987543

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.71  E-value=1.8e-15  Score=148.33  Aligned_cols=222  Identities=11%  Similarity=-0.014  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHhhhhcCC-CCccccccccCC-ChHHHHHHHHHHhcc-----CCCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 017569           39 KEAAYQVINDELMLDGN-PRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP  111 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~-p~~~l~~~~~~~-~~~~v~~~~~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g~~  111 (369)
                      ..++.+.+++....+.. ..++|+.+.+.. +++.+.+.+.++++.     ....|...++..+|++++.+++.+..|.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~   96 (409)
T PRK07590         17 FPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCD   96 (409)
T ss_pred             HHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCc
Confidence            45565555555444433 335676666654 346678888777654     23455566789999999999988777765


Q ss_pred             CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce-----------eEE
Q 017569          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-----------LKE  180 (369)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~-----------v~~  180 (369)
                      .+.   ..+++|+|+++++.+. ..+.+             .+++|++++|+|..+...++..|..           ++.
T Consensus        97 ~~~---~~I~it~Ga~~al~~l-~~~~~-------------~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~  159 (409)
T PRK07590         97 ISA---DEIFISDGAKCDTGNI-LDIFG-------------PDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVY  159 (409)
T ss_pred             CCh---hhEEECCCHHHHHHHH-HHhcC-------------CCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeE
Confidence            432   4589999999998764 33322             1478999999999999999999986           888


Q ss_pred             EeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccC
Q 017569          181 VKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY  256 (369)
Q Consensus       181 v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~  256 (369)
                      +|+++ +++.+|.+      ++++++|++++|+||||.+.+   +++|+++|+++      ++++++|.+|+.+...  .
T Consensus       160 v~~~~~~~~~~d~~------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~Y~~~~~~--~  225 (409)
T PRK07590        160 LPCTAENNFVPELP------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN------GSLILFDAAYEAFISD--P  225 (409)
T ss_pred             eecccccCCcccCc------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc------CeEEEEEccchhhccC--C
Confidence            99874 33555543      257899999999999999954   77788889999      9999999999875431  1


Q ss_pred             CCccccccCCCC--cEE-EEcCccCC-CCCCCeEEEEEe
Q 017569          257 PDLEWDFRLPLV--KSI-NVSGHKYG-LVYAGVGWVVWR  291 (369)
Q Consensus       257 ~~~~~~~~~~~~--Dsi-~~~~hK~l-~~p~g~g~l~~~  291 (369)
                      .....-......  ..+ ..+..|.+ .....+|+++..
T Consensus       226 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~  264 (409)
T PRK07590        226 SLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVP  264 (409)
T ss_pred             CCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcC
Confidence            111111112221  133 34688987 477889999874

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=8e-16  Score=148.93  Aligned_cols=258  Identities=14%  Similarity=-0.000  Sum_probs=165.9

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+...+. .+++.+.+++.+.... ...|....+ .+    +++.+++++|+++     ..+++|+|+++++...+.+
T Consensus        39 i~l~~~~~~~~~~~~~~~al~~~~~~-~~~Y~~~~g-~~----lr~~ia~~~~~~~-----~~i~~t~G~~~~l~~~~~~  107 (371)
T PRK05166         39 AKLGSNENPLGPSPAVRRAFADIAEL-LRLYPDPQG-RA----LREAIAARTGVPA-----DRIILGNGSEDLIAVICRA  107 (371)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCcH-HH----HHHHHHHHhCcCH-----HHEEEcCCHHHHHHHHHHH
Confidence            344444332 3456677777665432 223332223 24    4455778888875     2489999999999888777


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +.++             ++.|+++.++|..+...++..|++++.+|++++ +.+|++++++++++++++|++++|+||||
T Consensus       108 ~~~~-------------gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~NPtG  173 (371)
T PRK05166        108 VLRP-------------GDRVVTLYPSFPLHEDYPTMMGARVERVTVTPD-LGFDLDALCAAVARAPRMLMFSNPSNPVG  173 (371)
T ss_pred             hcCC-------------CCEEEEcCCChHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHhhhcCCCEEEEeCCCCCCC
Confidence            6432             478999999999999999999999999999864 79999999999988999999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-cc-ccCCCCc-EEEEcCccCCC-CCCCeEEEEEeC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WD-FRLPLVK-SINVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~-~~~~~~D-si~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                      .+.+.+++.++++...+    ++++++|++|+.+..  -.+... .. +....-. .+..+.-|.++ .....|++++.+
T Consensus       174 ~~~~~~~~~~l~~~~~~----~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~  247 (371)
T PRK05166        174 SWLTADQLARVLDATPP----ETLIVVDEAYAEYAA--GDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD  247 (371)
T ss_pred             CCCCHHHHHHHHHhCCC----CcEEEEECcHHHhcC--CcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC
Confidence            99998888888875411    789999999987542  111111 01 1111112 34455788875 778899988755


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ++.. ..+.....       .+    +-   ..+.+.+++..+...+ +++.  ...+..+++.+.|++.|+
T Consensus       248 ~~l~-~~~~~~~~-------~~----~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  304 (371)
T PRK05166        248 PELV-GLLDRVRT-------PF----NV---NGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMGY  304 (371)
T ss_pred             HHHH-HHHHHhcc-------CC----CC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            4332 22211000       00    11   1233334444443233 3433  455566778888887764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.71  E-value=8.6e-16  Score=153.58  Aligned_cols=181  Identities=14%  Similarity=0.018  Sum_probs=138.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhC----CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFN----TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g----~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~  162 (369)
                      |..+.|..+|++++.+++.+.+|    +++     ..+++|+|+++|+.+++.++.++             ++.|+++.|
T Consensus        90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~p-----e~Ivit~Ga~~al~~l~~~l~~p-------------GD~Vlv~~P  151 (496)
T PLN02376         90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDP-----ERVVMSGGATGANETIMFCLADP-------------GDVFLIPSP  151 (496)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCcCCh-----hhEEEccchHHHHHHHHHHhCCC-------------CCEEEECCC
Confidence            44456889999999999999888    343     35899999999999998887653             478999999


Q ss_pred             CcchHHHHHh-hhcceeEEEeccC-CccccCHHHHHHHHh------hcCcEEEEeeCCCCcccCCC---HHHHHHHHHHh
Q 017569          163 VQVCWEKFAR-YFEVELKEVKLEE-GYYVMNPVKAVELVD------ENTICVAAILGSTLTGEFED---VKLLHDLLTKK  231 (369)
Q Consensus       163 ~h~s~~~~~~-~~G~~v~~v~~~~-~~~~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~  231 (369)
                      +|..+...+. ..|++++.||++. +++.+|++++++++.      .++++|+++.|+||||.+.+   +++|.++|+++
T Consensus       152 ~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~  231 (496)
T PLN02376        152 YYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK  231 (496)
T ss_pred             CccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            9999998777 4799999999964 458999999987643      36788999999999999965   67788899999


Q ss_pred             hhccCCCceEEeecccccccccccCCCcccc--c----cCC--CCc--EEEEcCccCCC-CCCCeEEEEEeCC
Q 017569          232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWD--F----RLP--LVK--SINVSGHKYGL-VYAGVGWVVWRTK  293 (369)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~--~----~~~--~~D--si~~~~hK~l~-~p~g~g~l~~~~~  293 (369)
                            ++++++|++|+...+  -.+....-  +    ...  ..+  .+..+..|.++ .+..+|+++..++
T Consensus       232 ------~i~lI~DEiY~~~~f--~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~  296 (496)
T PLN02376        232 ------NIHLVVDEIYAATVF--AGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND  296 (496)
T ss_pred             ------CCEEEEEcCcccccc--CCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence                  999999999997543  11111000  1    000  112  23568999874 6689999987543

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.71  E-value=3.1e-16  Score=153.50  Aligned_cols=214  Identities=13%  Similarity=-0.011  Sum_probs=144.2

Q ss_pred             CccccccccC-C-ChH----HHHHHHHHHhc-cCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE--EeCCch
Q 017569           57 RLNLASFVTT-W-MEP----ECDKLVMASIN-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV--GTVGSS  127 (369)
Q Consensus        57 ~~~l~~~~~~-~-~~~----~v~~~~~~~~~-~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~--~t~Ggt  127 (369)
                      .++|+.+.+. + ++.    .+.+++.+.+. .....|....|..++++++.+|+.+..+...+.   ..+.  .|.|++
T Consensus        31 ~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~---~~v~~~~t~G~~  107 (404)
T PTZ00376         31 KVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAE---KRIATVQALSGT  107 (404)
T ss_pred             cEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCcccccc---CeEEEeeccCcc
Confidence            3566666541 2 222    23344333333 233556667799999999998886554322111   1244  488999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHh---hcC
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENT  203 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~---~~~  203 (369)
                      +|+.+++.+++.-.          ..+++|++++|+|+.+...++..|++++.+|+. ++++.+|++.+++++.   +++
T Consensus       108 ~al~~~~~~l~~~~----------~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~  177 (404)
T PTZ00376        108 GALRLGFEFLKRFL----------PAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGS  177 (404)
T ss_pred             hHHHHHHHHHHHhc----------CCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCC
Confidence            99988776543210          124799999999999999999999999999984 3458999999999985   345


Q ss_pred             cEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-c-ccccCCCCcEEE-EcCcc
Q 017569          204 ICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSIN-VSGHK  277 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~Dsi~-~~~hK  277 (369)
                      ++++++.|+||||.+.   .+++|+++|+++      ++++++|.+|..+......... . ..+....-..++ .+.-|
T Consensus       178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  251 (404)
T PTZ00376        178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRK------NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSK  251 (404)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Confidence            7788899999999984   577888999999      9999999999875431000000 0 111111112344 45788


Q ss_pred             CCC-CCCCeEEEE
Q 017569          278 YGL-VYAGVGWVV  289 (369)
Q Consensus       278 ~l~-~p~g~g~l~  289 (369)
                      .++ .++..|+++
T Consensus       252 ~~~~~GlRvG~~~  264 (404)
T PTZ00376        252 NMGLYGERIGALH  264 (404)
T ss_pred             cccccccccceEE
Confidence            887 679999985

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.71  E-value=7.7e-16  Score=148.35  Aligned_cols=200  Identities=16%  Similarity=0.086  Sum_probs=138.9

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA  133 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~a  133 (369)
                      ..++|+...+. ++++.+.+.+.+++... ..|. .+...+++    +.+++++|++++     ..++ ++|+++++..+
T Consensus        35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~y~-~~~~~~lr----~~ia~~~~~~~~-----~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         35 SIIKLGSNENPLGPSPKAVEAIEKELSKI-HRYP-EPDAPELR----EALSKYTGVPVE-----NIIVGGDGMDEVIDTL  103 (361)
T ss_pred             ceEEccCCCCCCCCCHHHHHHHHHHHHhh-cCCC-CCCHHHHH----HHHHHHhCCCHH-----HEEEeCCCHHHHHHHH
Confidence            33455444332 34566777766665432 2222 22334444    457777888752     3667 67878888777


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +.++..+             ++.|+++.++|..+...++..|++++.+|.+.+ +.+|+++|++++++++++|++++|+|
T Consensus       104 ~~~~~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~~~~p~n  169 (361)
T PRK00950        104 MRTFIDP-------------GDEVIIPTPTFSYYEISAKAHGAKPVYAKREED-FSLDVDSVLNAITEKTKVIFLCTPNN  169 (361)
T ss_pred             HHHhcCC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEeecCCC-CCcCHHHHHHHhccCCCEEEEeCCCC
Confidence            7665331             468999999998888888999999999997653 79999999999988899999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      |||.+.|.++|.++|+++      ++++++|++|+.+.-    ........ ...+ .+..+..|.++ .+.+.|+++..
T Consensus       170 ptG~~~~~~~l~~l~~~~------~~~li~De~y~~~~~----~~~~~~~~~~~~v-i~~~S~SK~~g~~GlRiG~~~~~  238 (361)
T PRK00950        170 PTGNLIPEEDIRKILEST------DALVFVDEAYVEFAE----YDYTPLALEYDNL-IIGRTFSKVFGLAGLRIGYGFVP  238 (361)
T ss_pred             CCCCCcCHHHHHHHHHHC------CcEEEEECchhhhCc----cchHHHHHhcCCE-EEEEeehHhhcCchhhcchhcCC
Confidence            999999999999999999      999999999976431    11110111 1111 33346789875 44567888763

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.70  E-value=1.4e-15  Score=146.94  Aligned_cols=257  Identities=14%  Similarity=0.061  Sum_probs=166.5

Q ss_pred             Ccccccccc-CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVT-TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~-~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|....+ ..+++.+.+++.+++.. ...|.. +...+++    +.+++++|+++     ..+++|+|+++++...+.
T Consensus        34 ~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~-~~~~~lr----~~ia~~~~~~~-----~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         34 IIKLASNENPLGPSPKAIEAIRAAADE-LHRYPD-GSGFELK----AALAEKFGVDP-----ERIILGNGSDEILELLAR  102 (367)
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHh-hcCCCC-CcHHHHH----HHHHHHhCcCH-----HHEEEcCCHHHHHHHHHH
Confidence            344444432 23356677877776643 223322 2233444    45777888865     248899999998877766


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++.+.             ++.|++++++|..+...++..|++++.+|++  ++.+|++++++++++++++|++++|+|||
T Consensus       103 ~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~npt  167 (367)
T PRK02731        103 AYLGP-------------GDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK--DYGHDLDAMLAAVTPRTRLVFIANPNNPT  167 (367)
T ss_pred             HhcCC-------------CCEEEEecCCHHHHHHHHHHcCCeEEEeccc--CCCCCHHHHHHHhCCCCcEEEEeCCCCCC
Confidence            65331             4689999999988888888899999999884  47899999999999889999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC-CccccccCCCCcEE-EEcCccCCC-CCCCeEEEEEeC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-DLEWDFRLPLVKSI-NVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~~~~~~~~~~Dsi-~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                      |.+.+.++|.++++...+    ++++++|++|..+..  ... ..........-+.+ +.+..|.++ .+.++|+++.++
T Consensus       168 G~~~~~~~l~~l~~~~~~----~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~  241 (367)
T PRK02731        168 GTYLPAEEVERFLAGVPP----DVLVVLDEAYAEYVR--RKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPP  241 (367)
T ss_pred             CcCCCHHHHHHHHHhCCC----CcEEEEECcHHHhcc--CcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCH
Confidence            999999999999987411    899999999976442  111 00111111112333 335668753 556789998753


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       +.. +.+...   ..    .+.  .     ..+.++++...+..+. +++.  +..++.+++.+.|++.|+
T Consensus       242 -~~~-~~l~~~---~~----~~~--~-----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  297 (367)
T PRK02731        242 -EII-DALNRV---RQ----PFN--V-----NSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGL  297 (367)
T ss_pred             -HHH-HHHHHc---cC----CCC--C-----CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence             222 222110   00    010  1     1345566666664433 3444  667777888888888763

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.70  E-value=1.9e-15  Score=148.21  Aligned_cols=255  Identities=9%  Similarity=-0.035  Sum_probs=157.7

Q ss_pred             ccCCChHHHHHHHHHHhccCCCCCCC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .+-..+|.+.+++.++++........   ..+......++.+.+++++|.+.       .+++++|++||..++..+...
T Consensus        57 l~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~-------~i~~~sG~~a~~~~i~~l~~~  129 (410)
T PRK13392         57 LGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKES-------ALLFTSGYVSNDAALSTLGKL  129 (410)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCC-------EEEECcHHHHHHHHHHHHhcC
Confidence            34345678888888777543221111   11122223355666999999653       566666788988877755321


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTG  216 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG  216 (369)
                                 ..++.|+++...|.++..+++..|++++.++.+      |.+.+++.+.    +++++|++++++||+|
T Consensus       130 -----------~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG  192 (410)
T PRK13392        130 -----------LPGCVILSDALNHASMIEGIRRSGAEKQVFRHN------DLADLEEQLASVDPDRPKLIAFESVYSMDG  192 (410)
T ss_pred             -----------CCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC------CHHHHHHHHHhccCCCCEEEEEeCCCCCCc
Confidence                       013578887788999888888889988776532      3444555443    4788999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      .+.|+++|.++|+++      ++++++|+||+.+.+............ ...+|.++.+.+|+++.+.  |+++. +++.
T Consensus       193 ~~~~l~~i~~l~~~~------~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~-~~~~  263 (410)
T PRK13392        193 DIAPIEAICDLADRY------NALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA-SADL  263 (410)
T ss_pred             ccccHHHHHHHHHHc------CCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc--chhhc-CHHH
Confidence            999999999999999      999999999984433100000000011 2357888888999986543  66654 3322


Q ss_pred             cccccc-cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELV-FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~-~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      . ..+. ....|..        ..+.+.....++.++|+.+...+ ... +..++.+++++.|++.|+
T Consensus       264 ~-~~l~~~~~~~~~--------s~~~~~~~~~a~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~~g~  321 (410)
T PRK13392        264 I-DFVRSFAPGFIF--------TTALPPAVAAGATAAIRHLKTSQ-TERDAHQDRVAALKAKLNANGI  321 (410)
T ss_pred             H-HHHHHhCcchhc--------cCcCCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHcCC
Confidence            2 1111 1111111        11122223445556666654433 233 778889999999998764

>PRK03321 putative aminotransferase; Provisional

Probab=99.70  E-value=7.6e-16  Score=147.95  Aligned_cols=192  Identities=12%  Similarity=0.005  Sum_probs=138.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++.+++.. ...|. .++..+++++    +++++|+++     ..+++|+|+++++..++.+...        
T Consensus        36 ~~~~~~~a~~~~~~~-~~~y~-~~g~~~lr~~----ia~~~~~~~-----~~I~~~~G~~~~l~~~~~~~~~--------   96 (352)
T PRK03321         36 PLPSVRAAIARAAAG-VNRYP-DMGAVELRAA----LAEHLGVPP-----EHVAVGCGSVALCQQLVQATAG--------   96 (352)
T ss_pred             CCHHHHHHHHHHHHh-cCcCC-CCcHHHHHHH----HHHHhCcCH-----HHEEECCCHHHHHHHHHHHhcC--------
Confidence            446778887776643 22232 3466556655    777778765     2488899999888777665533        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l  227 (369)
                           .++.|+++.+++..+...++..|++++.+|++++ +.+|++++++++++++++|++++|+||||.+.|.++|.++
T Consensus        97 -----~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l  170 (352)
T PRK03321         97 -----PGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD-HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARF  170 (352)
T ss_pred             -----CCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC-CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence                 1468999999988888888899999999998764 7899999999998899999999999999999999999999


Q ss_pred             HHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEE-cCccCCC-CCCCeEEEEEe
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINV-SGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~-~~hK~l~-~p~g~g~l~~~  291 (369)
                      |++.+.    ++++++|++|+.+...   ......+.  ...-+.+++ +..|.++ ...+.|+++..
T Consensus       171 ~~~~~~----~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~  231 (352)
T PRK03321        171 LDAVPA----DVLVVLDEAYVEYVRD---DDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH  231 (352)
T ss_pred             HHhCCC----CeEEEEechHHHhccC---cCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC
Confidence            987311    8999999999865431   11111111  112234444 5778875 44568898864

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.70  E-value=6.9e-15  Score=153.35  Aligned_cols=309  Identities=11%  Similarity=0.038  Sum_probs=195.6

Q ss_pred             ccccccccc-hhHhhhCC-CCCCCCCCCCHHHHHHHHHHhhhhcCCCCcccc-ccccCCChHHHHHHHHH---Hhcc-CC
Q 017569           12 EILSSTFAS-RYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA-SFVTTWMEPECDKLVMA---SINK-NY   84 (369)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~-~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~-~~~~~~~~~~v~~~~~~---~~~~-n~   84 (369)
                      ++|+++|.. .|-.-++. ...+|+ +.++.++++.+.++-..+...+.-++ ++-+...++.+.+.+.+   .+.. .+
T Consensus        20 ~s~d~l~~~~iP~~i~~~~~l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytP   98 (939)
T TIGR00461        20 SDLNALIEQLVPPNILKRRPLQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTP   98 (939)
T ss_pred             CCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcCCC
Confidence            456777766 45322222 245655 46999999999988665543221122 22233445666534432   1222 35


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      .+++.++|.-+...+.+.++++|.|++.     .+..+..++|.+.-.++++.+..          ..++.+|++++..|
T Consensus        99 yQ~EisQG~Le~l~e~Qt~i~eLtGm~~-----aNaSl~d~atA~aEa~~~a~~~~----------~~~~~~vlv~~~~h  163 (939)
T TIGR00461        99 YQPEISQGRLEALLNFQTVVSDLTGLPV-----ANASLLDEGTAAAEAMALSFNVS----------KKKANKFFVAKDLH  163 (939)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHCCCh-----hhhhccchhhHHHHHHHHHHHhh----------cCCCCEEEECCCCC
Confidence            5556677888888899999999999996     23566667776555444444321          01236899999999


Q ss_pred             chHHHHH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          165 VCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       165 ~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      +.+...+    ...|++++.++.         ++|++.+  ++.++++++|++. |.+.|+++|++++|+.      +.+
T Consensus       164 P~~~~v~~t~a~~~g~~v~~~~~---------~~l~~~~--~~~~v~~q~Pn~~-G~ied~~~i~~~~h~~------gal  225 (939)
T TIGR00461       164 PQTKSVLHTRAKPFGIEVIVVDC---------SDIKKAV--DVFGCLLQYPATD-GSILDYKQLIDALHSH------KSL  225 (939)
T ss_pred             cchHHHHHHHHHhcCcEEEEEcH---------HHHhhcC--CEEEEEEECCCCC-eEEecHHHHHHHHHHc------CCE
Confidence            9876544    467888887743         3466555  5678888888665 9999999999999999      999


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCCC----CCCCeEEEEEeCCC--Cccccccc-ccCccC-----
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL----VYAGVGWVVWRTKD--DLPDELVF-HINYLG-----  308 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~----~p~g~g~l~~~~~~--~~~~~~~~-~~~y~~-----  308 (369)
                      +++++-......  +.+  +-   ..|+|.++-++|+|+.    ++++.|++.+|++-  .++..+.. ..+-.+     
T Consensus       226 ~~~~ad~~al~l--l~~--Pg---e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~  298 (939)
T TIGR00461       226 VSVAADLMALTL--LTP--PG---HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALR  298 (939)
T ss_pred             EEEEechHHhCC--cCC--HH---HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccce
Confidence            999654333222  111  22   2389999777788853    34558999998641  11111110 001111     


Q ss_pred             ----CCCCCc------cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          309 ----SDQPTF------TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       309 ----~~~~~~------~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                          ...+..      .--||-.+..++...+++.++|.+|++++  +++.+|+||++.|.+.|+
T Consensus       299 l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~  363 (939)
T TIGR00461       299 LALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPH  363 (939)
T ss_pred             eecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                000000      01155555556666777899999999998  899999999999999883

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.70  E-value=1.9e-15  Score=148.66  Aligned_cols=194  Identities=16%  Similarity=0.121  Sum_probs=136.2

Q ss_pred             CChHHHHHHHHHHhccCC-C--CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY-V--DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~-~--~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      +.++.+.+++.+++.... .  +........ ....+.+.+++++|++.       .+++++|+.|+.+++.++ .    
T Consensus        92 ~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~-r~~~le~~lA~l~gae~-------alvv~sg~aAi~l~l~~l-~----  158 (454)
T TIGR00474        92 PLAEEAIEAVTDAARGYSNLEYDLETGKRGS-RYSHVEGLLCELTGAED-------ALVVNNNAAAVLLALNTL-A----  158 (454)
T ss_pred             CCCHHHHHHHHHHHhcccchhccccccccch-HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHh-C----
Confidence            446778888887775421 1  111111122 23456677999999975       567888899988777543 1    


Q ss_pred             HHHhcCCCCCCCeEEecCCCcc------hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc--
Q 017569          144 KRKEQGKPYDKPNIVTGANVQV------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT--  215 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t--  215 (369)
                               .+++||++...|.      ++...++..|+.+++++.+.   ..|+++++++|+++|++|++.+++|++  
T Consensus       159 ---------~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~---~~~l~dle~aI~~~T~lv~~~h~sN~~~~  226 (454)
T TIGR00474       159 ---------KGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN---RTHLKDYEDAITENTALLLKVHTSNYRIV  226 (454)
T ss_pred             ---------CcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC---CCCHHHHHHhcCcCCEEEEEEccCccccc
Confidence                     1468999987653      23445677799998887642   458999999999999999999999984  


Q ss_pred             c--cCCCHHHHHHHHHHhhhccCCCceEEeecccccccc--cccCCCccc--cccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          216 G--EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA--PFLYPDLEW--DFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       216 G--~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~~--~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      |  .+.|+++|+++|+++      ++++++|++.|...-  +|-.+..+.  +....++|.+++|+|||+++|. .|+++
T Consensus       227 G~~~~~dl~~I~~la~~~------g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~  299 (454)
T TIGR00474       227 GFTEEVSIAELVALGREH------GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIV  299 (454)
T ss_pred             CCCCCCCHHHHHHHHHHc------CCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe-EEEEE
Confidence            5  478999999999999      999999987553210  010011111  2224589999999999998885 68888


Q ss_pred             EeC
Q 017569          290 WRT  292 (369)
Q Consensus       290 ~~~  292 (369)
                      .++
T Consensus       300 g~~  302 (454)
T TIGR00474       300 GKK  302 (454)
T ss_pred             ECH
Confidence            765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.69  E-value=2.7e-15  Score=145.42  Aligned_cols=197  Identities=14%  Similarity=0.045  Sum_probs=143.6

Q ss_pred             CChHHHHHHHHHHhccC--CCCCCCCcchHHHHHHHHHHHHHHhC--CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n--~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (369)
                      ++++.+.+.+.++++.+  ...| ..++..+|++++.+|+.+.+|  .+.+   ...+++|+|+++++..++.+....  
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~---~~~I~it~Ga~~al~~~~~~~~~~--  114 (374)
T PRK02610         41 DLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQIT---PANISVGNGSDELIRSLLIATCLG--  114 (374)
T ss_pred             CCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCC---HHHEEEcCChHHHHHHHHHHHcCC--
Confidence            34577888888776653  2334 235788899998888876653  2221   135899999999998777665432  


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccC
Q 017569          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEF  218 (369)
Q Consensus       143 ~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~  218 (369)
                            |    ++.|+++.|+|..+...++..|++++.++++++++.+|+++|++++++    ++++|+++.|+||||.+
T Consensus       115 ------g----~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~  184 (374)
T PRK02610        115 ------G----EGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNP  184 (374)
T ss_pred             ------C----CCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCC
Confidence                  1    237999999999999999999999999998765689999999999874    78999999999999999


Q ss_pred             CCHHHHHHHHHH-hhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCC-CCCCCeEEEEE
Q 017569          219 EDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAGVGWVVW  290 (369)
Q Consensus       219 ~~l~~I~~l~~~-~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l-~~p~g~g~l~~  290 (369)
                      .+.+++.++++- +      ++|+++|.+|..+..   .+. ...+. ..++ .+.-|.-|.+ ..+..+|+++.
T Consensus       185 ~s~~~l~~l~~~~~------~~~iI~De~Y~~~~~---~~~-~~~~~~~~~~-ivi~SfSK~~g~~GlRiG~~v~  248 (374)
T PRK02610        185 LTAAELEWLRSLPE------DILVVIDEAYFEFSQ---TTL-VGELAQHPNW-VILRTFSKAFRLAAHRVGYAIG  248 (374)
T ss_pred             CCHHHHHHHHhccC------CcEEEEeccccccCc---cch-HHHHhcCCCE-EEEEecchhccCcccceeeeec
Confidence            888777776642 3      899999999986432   110 01111 1111 2345678988 67789999986

>PRK05839 hypothetical protein; Provisional

Probab=99.69  E-value=1.1e-14  Score=141.14  Aligned_cols=211  Identities=11%  Similarity=-0.003  Sum_probs=148.9

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      +++.++|..+.+.. +++.+.+++.+..+. ...|....+..++++++++++++.+|.+.+   ...+++|+|+++++..
T Consensus        23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~---~~~I~it~G~~~al~~   98 (374)
T PRK05839         23 EYKGLDLTIGEPQFETPKFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELK---ENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---cceEEEecCcHHHHHH
Confidence            45666666666553 346677777665532 334444457789999999999999886532   2358999999999987


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++...           ..++.|+++.|+|..+...++..|++++.+|+++ +++.+|+.+.+  + +++++|+++.|
T Consensus        99 ~~~~~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP  164 (374)
T PRK05839         99 FPQFVLFD-----------KQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSP  164 (374)
T ss_pred             HHHHHhcC-----------CCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCC
Confidence            77765320           1246899999999999999999999999999974 44777765442  2 46899999999


Q ss_pred             CCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cc-------cCCCCcEEEEcCccC-C
Q 017569          212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF-------RLPLVKSINVSGHKY-G  279 (369)
Q Consensus       212 ~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~-------~~~~~Dsi~~~~hK~-l  279 (369)
                      +||||.+-   .+++|+++|+++      ++++++|.+|+.+..  -.+.... ..       ...++ .+..+.-|. +
T Consensus       165 ~NPTG~~~s~~~l~~i~~~~~~~------~~~ii~DE~Y~~~~~--~~~~~s~~~~~~~~~~~~~~~v-i~~~SfSK~~~  235 (374)
T PRK05839        165 NNPTGRTLSLEELIEWVKLALKH------DFILINDECYSEIYE--NTPPPSLLEASILVGNESFKNV-LVINSISKRSS  235 (374)
T ss_pred             CCCcCcccCHHHHHHHHHHHHHc------CCEEEeccchhhccc--CCCCCCHhhhhcccCccccCcE-EEEeccccccC
Confidence            99999984   477788888899      999999999987432  0111010 00       00121 333457785 6


Q ss_pred             CCCCCeEEEEEe
Q 017569          280 LVYAGVGWVVWR  291 (369)
Q Consensus       280 ~~p~g~g~l~~~  291 (369)
                      .....+|+++..
T Consensus       236 ~~GlRiG~ii~~  247 (374)
T PRK05839        236 APGLRSGFIAGD  247 (374)
T ss_pred             CccceeEEEecC
Confidence            788999999863

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.69  E-value=8.4e-16  Score=152.94  Aligned_cols=215  Identities=12%  Similarity=0.016  Sum_probs=140.6

Q ss_pred             cccccccCCChHH-HHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           59 NLASFVTTWMEPE-CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        59 ~l~~~~~~~~~~~-v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +++.+.|..+++. +.+++...+..+  ++....+....|+.+.+++.+.++..........+++|+|+++|+.+++.++
T Consensus        98 ~l~~g~p~~~~~~~~~~~~~~~~~~~--Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l  175 (521)
T TIGR03801        98 SYVIDQLGFDPDAFLYEMCDGIIGDN--YPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSL  175 (521)
T ss_pred             hhcCCCCCCCCCHHHHHHHHHhhcCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHH
Confidence            4555555544444 444444444332  2223334445555555677776554321111235899999999999988774


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh--cceeEEEeccC-Cc-----cccCHHHHHHHHhhcCcEEEEe
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEE-GY-----YVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~--G~~v~~v~~~~-~~-----~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      ....        .-..+++|+++.|+|..+...+++.  |+.++.|++++ +.     |.+|+++|++++++++++|+++
T Consensus       176 ~~~~--------ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~  247 (521)
T TIGR03801       176 KANE--------LLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVV  247 (521)
T ss_pred             hHhh--------cCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEe
Confidence            2210        0012579999999999999988876  56666777653 22     8899999999998899999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCC-CCCCC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYG-LVYAG  284 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l-~~p~g  284 (369)
                      +|+||||.+.+   +++|+++|++++.    +++|++|.+|+.+...+..     .+. ...--.+..|..|.+ ++++.
T Consensus       248 nP~NPTG~vls~e~l~~I~~ia~~~~~----~l~II~DEvY~~f~~~~~s-----l~~~~~~~vI~v~SfSK~fg~~G~R  318 (521)
T TIGR03801       248 NPSNPPSVAMSDESIEKIVDIVANDRP----DLMILTDDVYGTFVDDFRS-----LFAELPYNTIGVYSFSKYFGATGWR  318 (521)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCC----CeEEEECCCchhhcccccc-----hhhhCCCCEEEEEcchhhccCchhh
Confidence            99999999965   7778888887421    8999999999865421111     111 111113344577875 57899


Q ss_pred             eEEEEEeC
Q 017569          285 VGWVVWRT  292 (369)
Q Consensus       285 ~g~l~~~~  292 (369)
                      .|+++..+
T Consensus       319 lG~i~~~~  326 (521)
T TIGR03801       319 LGTIALHK  326 (521)
T ss_pred             hhhhhcCc
Confidence            99998754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.69  E-value=8.7e-16  Score=141.92  Aligned_cols=246  Identities=15%  Similarity=0.093  Sum_probs=153.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .+.|++.+++.++-......|+..+.+.++|+    ++++++|...       +.|+++||+||.+++.+...+      
T Consensus        11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~----~~ae~~g~~a-------~~Fv~sGT~aN~lal~~~~~~------   73 (342)
T COG2008          11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQ----RIAELFGKEA-------ALFVPSGTQANQLALAAHCQP------   73 (342)
T ss_pred             CCCHHHHHHHHhccccCCCCCCCCHHHHHHHH----HHHHHhCCce-------EEEecCccHHHHHHHHHhcCC------
Confidence            34577777776553222333445555555554    4899999943       899999999999999998753      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHH--hhhcceeEEEec-cCCccccCHHHHHHHHhhc-------CcEEEEeeCCCCcc
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFA--RYFEVELKEVKL-EEGYYVMNPVKAVELVDEN-------TICVAAILGSTLTG  216 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~--~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~-------~~~v~~~~~~~~tG  216 (369)
                             +..||+...+|....++.  ..++-.. .+++ +..++.+++++|+.+|.++       +.+++.+.. |..|
T Consensus        74 -------~~~vi~~~~aHi~~~E~Ga~~~~~~~~-~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~G  144 (342)
T COG2008          74 -------GESVICHETAHIYTDECGAPEFFGGGQ-KLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGG  144 (342)
T ss_pred             -------CCeEEEeccccceecccCcHHHHcCCc-eeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCc
Confidence                   358999999998765532  3444222 3333 3346999999999988742       344544444 4779


Q ss_pred             cC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          217 EF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       217 ~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ++   +.+++|.++||++      ++.||+|||=-+..+..+.+.. .++ ..++|++++++-|.++.|.+  .+++.++
T Consensus       145 tVy~l~el~~i~~~~k~~------~l~LHmDGAR~~nA~valg~~~-~~~-~~~~D~v~~~~tK~g~~~~g--Aiv~gn~  214 (342)
T COG2008         145 TVYPLDELEAISAVCKEH------GLPLHMDGARLANALVALGVAL-KTI-KSYVDSVSFCLTKGGGAPVG--AIVFGNR  214 (342)
T ss_pred             eecCHHHHHHHHHHHHHh------CCceeechHHHHHHHHHcCCCH-HHH-HhhCCEEEEecccCCcceee--eEEEcCH
Confidence            88   4577888999999      9999999984333332233211 111 45899999999999987765  3555555


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++..+     ..|.......    +-|.+....++|..  +|...-....  +..+||++|++.+++.
T Consensus       215 ~~~~~-----a~~~rK~~Gg----l~~k~r~laA~~~~--~l~~~~~~~~~~Han~mA~~La~~~~~~  271 (342)
T COG2008         215 DFAKR-----ARRWRKRAGG----LMRKARFLAAQGLY--ALEDDVWRLAADHANAMAARLAEGLEAK  271 (342)
T ss_pred             HHHHH-----HHHHHHHhcc----cHhhhhHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHhhhhc
Confidence            44322     2222110001    12223333444432  2322222323  6667799999999954

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.68  E-value=9.9e-16  Score=147.97  Aligned_cols=215  Identities=17%  Similarity=0.099  Sum_probs=151.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC----cc
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV----QV  165 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~----h~  165 (369)
                      .|...+||+.    ++++.|.+.       .+.+++|+.|+.+++.++..+             +++|+++...    +.
T Consensus        63 ~P~~~~lE~~----la~leg~~~-------av~~sSG~aAi~~al~all~~-------------GD~Vl~~~~~yg~t~~  118 (384)
T PRK06434         63 NPTVQAFEEK----YAVLENAEH-------ALSFSSGMGAITSAILSLIKK-------------GKRILSISDLYGQTFY  118 (384)
T ss_pred             ChhHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCccchHHH
Confidence            4667777777    888889875       788999999999998876432             4788887753    33


Q ss_pred             hHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          166 CWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      .+...+..+|++++++++++ +++.+|+        +++++|++.+++||++.+.|+++|+++|+++      +  ++||
T Consensus       119 ~~~~~~~~~Gi~v~fvd~~~~~~~~l~~--------~~tklv~~e~~snpt~~v~Di~~I~~la~~~------~--lvVD  182 (384)
T PRK06434        119 FFNKVLKTLGIHVDYIDTDRLNSLDFDP--------SNYDLIYAESITNPTLKVPDIKNVSSFCHEN------D--VIVD  182 (384)
T ss_pred             HHHHHHHhcCcEEEEECCCChhheeecC--------CCeeEEEEEcCCCCCceeecHHHHHHHHHHc------C--eEEE
Confidence            44466778899999999874 3333221        3689999999999999999999999999999      8  4679


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcch
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS  322 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~  322 (369)
                      ++++....   ..  +.+   .++|.++.|+||++.++.+  .|+++.++++.. ..+..    ...   ..   |..  
T Consensus       183 ~t~~s~~~---~~--pl~---~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~-~~~~~----~~~---~~---G~~--  241 (384)
T PRK06434        183 ATFASPYN---QN--PLD---LGADVVIHSATKYISGHSDVVMGVAGTNNKSIF-NNLVE----RRK---TL---GSN--  241 (384)
T ss_pred             CCCCCccc---CC--chh---cCCCEEEeecccccCCCCCceEEEEecCcHHHH-HHHHH----HHH---hc---CCC--
Confidence            99864322   11  122   3799999999999988775  577766554322 11110    000   00   111  


Q ss_pred             hHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccccc
Q 017569          323 SQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       323 ~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ...+.+|..++.+..  +..+  +..++|+.++++|++++.+++-+|
T Consensus       242 ~~~~~A~l~~~gL~t--L~~R~~r~~~~a~~~a~~L~~~p~v~~V~y  286 (384)
T PRK06434        242 PDPIQAYLALRGLKT--LGLRMEKHNKNGMELARFLRDSKKISNVYY  286 (384)
T ss_pred             CCHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence            124666666665544  4434  999999999999999999887554

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.68  E-value=4.4e-15  Score=143.92  Aligned_cols=233  Identities=13%  Similarity=0.084  Sum_probs=154.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      |..++...+||++    +++++|.+.       .+.|++||.|+.+++.....             .+++|  +..+|..
T Consensus        74 Yagd~s~~~LE~~----vAe~lG~e~-------aV~v~sGTaAl~ll~~l~v~-------------pGd~V--p~n~~f~  127 (460)
T PRK13237         74 YAGSRNFYHLEET----VQEYYGFKH-------VVPTHQGRGAENLLSRIAIK-------------PGQYV--PGNMYFT  127 (460)
T ss_pred             hcCCCcHHHHHHH----HHHHHCCCe-------EEEeCCHHHHHHHHHHhCCC-------------CcCEE--CCccchH
Confidence            4667888899988    888999986       89999999999875332211             12343  7777776


Q ss_pred             HHHH-HhhhcceeEEEecc-----------CCccccCHHHHHHHHhhc----CcEEEEeeCCCCc-ccC---CCHHHHHH
Q 017569          167 WEKF-ARYFEVELKEVKLE-----------EGYYVMNPVKAVELVDEN----TICVAAILGSTLT-GEF---EDVKLLHD  226 (369)
Q Consensus       167 ~~~~-~~~~G~~v~~v~~~-----------~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~t-G~~---~~l~~I~~  226 (369)
                      ...+ +...|+.  .+++.           +.++.+|+++|+++|+++    +.+|.+..++|.. |.+   .++++|.+
T Consensus       128 Tt~ahI~~~Ga~--fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~e  205 (460)
T PRK13237        128 TTRYHQELNGGI--FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRE  205 (460)
T ss_pred             hhHHHHHhCCcE--EEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHH
Confidence            6555 6666764  44442           446899999999999864    3456667777877 444   57999999


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccC---CCc-cccc-----c-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLY---PDL-EWDF-----R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~-~~~~-----~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      +|+++      |+++|.|+|...+..-|+.   +.. ...+     . ...+|.+++|+||-+.+|.| |+++++++++.
T Consensus       206 lA~~~------Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~  278 (460)
T PRK13237        206 LCDKH------GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELF  278 (460)
T ss_pred             HHHHc------CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHH
Confidence            99999      9999999997654221221   000 0010     0 24689999999999998875 78888887655


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ...-..-..|.+-  .++   |..+++...++...|...-.+  .-+ +.+++++||.++|.+.|.
T Consensus       279 ~~~r~~~~~~eG~--~ty---gg~~grd~~alAvgl~E~~~~--~y~~~ri~~~~~l~~~L~~~Gv  337 (460)
T PRK13237        279 DEAKELVVVYEGM--PSY---GGMAGRDMEAMAIGIEESVQY--EYIEHRVGQVRYLGEKLLAAGV  337 (460)
T ss_pred             HHHHHhccccCCC--cCC---CChhhhHHHHHHhHHHhhchH--HHHHHHHHHHHHHHHHHHHCCC
Confidence            3321111233221  121   333344455555555554443  223 788899999999999875

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.68  E-value=6.8e-15  Score=136.48  Aligned_cols=255  Identities=12%  Similarity=0.069  Sum_probs=178.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++...+.|.  -...++-+++..|.++-.+.+..   ..+..++.|-.-++.+++.++.++       
T Consensus        39 ~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~---~e~i~~~p~VVpgi~~~I~~~T~~-------  106 (388)
T COG1168          39 TPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIK---PEWIVFVPGVVPGISLAIRALTKP-------  106 (388)
T ss_pred             CCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCC---cceEEEcCcchHhHHHHHHHhCcC-------
Confidence            358899999999988766654  34566888999999999999863   356888899888888888887553       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC--CccccCHHHHHHHHhh-cCcEEEEeeCCCCcccC---CCH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDE-NTICVAAILGSTLTGEF---EDV  221 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~---~~l  221 (369)
                            ++.|++..|.|+.+.++.+..|-++...|+-+  ..+.||.++||+++.+ +++++++|+|+||+|.+   +.+
T Consensus       107 ------gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL  180 (388)
T COG1168         107 ------GDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEEL  180 (388)
T ss_pred             ------CCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHH
Confidence                  57899999999999999999999999999853  3578899999999876 46999999999999998   789


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCC-CCcEEEE-cCccCCCC-CCCeEEEEEeCCCCcc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLP-LVKSINV-SGHKYGLV-YAGVGWVVWRTKDDLP  297 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~-~~Dsi~~-~~hK~l~~-p~g~g~l~~~~~~~~~  297 (369)
                      .+|+++|++|      |+.+++|+.+...++.-- ...++ .+... .-.++++ ++.|.++. +-.++.+++.++++..
T Consensus       181 ~~i~elc~kh------~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~  253 (388)
T COG1168         181 RKIAELCLRH------GVRVISDEIHADLVLGGH-KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRA  253 (388)
T ss_pred             HHHHHHHHHc------CCEEEeecccccccccCC-CccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHH
Confidence            9999999999      999999999987655210 10011 11111 1123443 45676544 4567888887765432


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                       .+.......+.        +   +..++++-+....+  |.+=+.++  ...+|-.|+++.|++.
T Consensus       254 -~~~~~l~~~~~--------~---~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~  307 (388)
T COG1168         254 -KFLKRLKRNGL--------H---GPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH  307 (388)
T ss_pred             -HHHHHHHHhcC--------C---CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             21111111111        1   11233333333333  55555666  6778888888888763

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.68  E-value=2.6e-15  Score=148.44  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=135.6

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 017569           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (369)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~  168 (369)
                      ...|...|++++.+++.+.+|..... +...+++|+|+++|+.+.+.++.++             ++.|+++.|+|..+.
T Consensus        93 ~~~G~~~LR~aiA~~l~~~~~~~~~v-~p~~Ivit~G~t~al~~l~~~l~~p-------------GD~Vlv~~P~Y~~f~  158 (447)
T PLN02607         93 DYHGLKSFRQAMASFMEQIRGGKARF-DPDRIVLTAGATAANELLTFILADP-------------GDALLVPTPYYPGFD  158 (447)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCCCc-CHHHeEEcCChHHHHHHHHHHhCCC-------------CCEEEEcCCCCcchH
Confidence            34588999999999999887732110 1135889999999998888876542             478999999999988


Q ss_pred             HHHh-hhcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCC
Q 017569          169 KFAR-YFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGW  237 (369)
Q Consensus       169 ~~~~-~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~  237 (369)
                      ..+. ..|++++.|++++ +++.+|++++++++++      ++++|++++|+||||.+-+   +++|.++|+++      
T Consensus       159 ~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~------  232 (447)
T PLN02607        159 RDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK------  232 (447)
T ss_pred             HHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHC------
Confidence            7776 4789999998874 4578999999999875      6789999999999999855   78889999999      


Q ss_pred             CceEEeecccccccccccCCCc-cc-c----c---c-CCCCcEEEEcCccCCC-CCCCeEEEEEeCC
Q 017569          238 DTPIHVDAASGGFIAPFLYPDL-EW-D----F---R-LPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~-~~-~----~---~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~  293 (369)
                      ++++++|++|....+  -.+.. .. .    .   . ...+ .+..+.-|-++ .+...|+++..++
T Consensus       233 ~i~lI~DEiYa~~~f--~~~~f~S~~s~~~~~~~~~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~  296 (447)
T PLN02607        233 NIHLVSDEIYSGSVF--SASEFVSVAEIVEARGYKGVAERV-HIVYSLSKDLGLPGFRVGTIYSYND  296 (447)
T ss_pred             CCEEEEecccccccc--CCCCcccHHHHHhhcCCCCCcCcE-EEEEcchhcCCCCcceEEEEEEcCH
Confidence            999999999987543  11110 00 0    0   0 1122 23456778764 6788999987543

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.68  E-value=4.3e-15  Score=143.80  Aligned_cols=224  Identities=11%  Similarity=-0.057  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~  171 (369)
                      +..++.+++++.+++++|.+.       .++.++|..||...+..+..             .++.|++....|.++..++
T Consensus        53 g~~~~~~~~e~~la~~~~~~~-------~l~~~sG~~a~~~~~~~~~~-------------~~d~ii~d~~~H~sv~~~~  112 (370)
T PRK05937         53 GPSSLLDDLEHKIAHFHGAPE-------AFIVPSGYMANLGLCAHLSS-------------VTDYVLWDEQVHISVVYSL  112 (370)
T ss_pred             CChHHHHHHHHHHHHHhCCCe-------EEEECChHHHHHHHHHHhCC-------------CCCEEEEEhhhhHHHHHHH
Confidence            356667788888999999974       45555666777432222211             1357777799999999888


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      +......  ++..    ..|+++|++++++      ++++|+++++++++|.+.|+++|+++|+++      ++++|+|+
T Consensus       113 ~~~~~~~--~~~~----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~------~~~livDe  180 (370)
T PRK05937        113 SVISGWH--QSFR----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKY------HAHLIVDE  180 (370)
T ss_pred             HHcCCce--EEec----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHc------CCEEEEEC
Confidence            8764322  2221    3588999998873      356777899999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchhH
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      ||+.+.++.........+.....+.+..+.+|.+ +|.|.|+++.++  .. ..+.. ..+|..        .++-+...
T Consensus       181 a~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~~--~~-~~~~~~~~~~~~--------s~~~~~~~  248 (370)
T PRK05937        181 AHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSSSE--VK-QDLMLNSPPLRY--------STGLPPHL  248 (370)
T ss_pred             CccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcCHH--HH-HHHHHhCCCCee--------cCCCCHHH
Confidence            9986654311100001111122234455677987 678877765432  11 11110 111211        12222334


Q ss_pred             HHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhc
Q 017569          325 IIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~  359 (369)
                      ++++..++..+..+|-... +..++.+++.+.|...
T Consensus       249 ~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~  284 (370)
T PRK05937        249 LISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA  284 (370)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC
Confidence            5666788888766664444 8889999999988653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.68  E-value=5.4e-15  Score=142.27  Aligned_cols=241  Identities=16%  Similarity=0.109  Sum_probs=159.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++.+.+.. ...|. .++..+++++    +++++++++     ..+++|+|+++++..++.++ .        
T Consensus        33 ~p~~~~~a~~~~~~~-~~~Y~-~~~~~~lr~~----ia~~~~~~~-----~~i~it~Ga~~~l~~~~~~~-~--------   92 (354)
T PRK06358         33 VPESLKQAITENLDK-LVEYP-DPDYLELRKR----IASFEQLDL-----ENVILGNGATELIFNIVKVT-K--------   92 (354)
T ss_pred             CCHHHHHHHHHHHHh-hhcCC-CccHHHHHHH----HHHHhCCCh-----hhEEECCCHHHHHHHHHHHh-C--------
Confidence            356777777776543 22232 2344555555    666667775     34899999999998877764 2        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL  223 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  223 (369)
                            ++.|+++.|+|..+...++..|++++.++++. +++.+| +++++.+.+++++|+++.|+||||.+.+   +++
T Consensus        93 ------~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~  165 (354)
T PRK06358         93 ------PKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKK  165 (354)
T ss_pred             ------CCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHH
Confidence                  24789999999999999999999999999874 347899 7777777778999999999999999965   888


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCcc-c-ccc-CCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccc
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-W-DFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~-~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~  299 (369)
                      |.++|+++      ++++++|++|..+...  ..... . ... ..++ .+.-|.-|.++ ...++|++++.++... ..
T Consensus       166 l~~~a~~~------~~~ii~De~Y~~~~~~--~~~~~~~~~~~~~~~v-i~~~S~SK~~gl~G~RiG~lv~~~~~~~-~~  235 (354)
T PRK06358        166 ILDKCEKR------NIYLIIDEAFMDFLEE--NETISMINYLENFKNL-IIIRAFTKFFAIPGLRLGYGLTSNKNLA-EK  235 (354)
T ss_pred             HHHHHHhc------CCEEEEeCcccccCCC--ccchhHHHhccCCCCE-EEEEechhhccCcchhheeeecCCHHHH-HH
Confidence            88899999      9999999999865431  11000 0 011 1121 23345778876 7889999987543222 12


Q ss_pred             cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH-HHH--HhhHHHHHHHHHHHhc
Q 017569          300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI-PSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       300 ~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~-~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +..-    .   ..    ++   ...+.++++...+....+ .+.  ...+..+++.+.|++.
T Consensus       236 ~~~~----~---~~----~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  284 (354)
T PRK06358        236 LLQM----R---EP----WS---INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF  284 (354)
T ss_pred             HHHh----C---CC----Cc---chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1110    0   01    11   124455555555543333 443  5567777888888776

>PRK10534 L-threonine aldolase; Provisional

Probab=99.67  E-value=1.1e-15  Score=145.73  Aligned_cols=244  Identities=12%  Similarity=0.018  Sum_probs=147.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      ++|.+.+++.++.. +...|...+...+||++    +++++|.+.       .++++||++++..++.+...+       
T Consensus        12 p~~~~~~a~~~~~~-~~~~Y~~~~~~~~L~~~----la~~~g~~~-------~~v~~~g~~a~~~~l~~~~~~-------   72 (333)
T PRK10534         12 PSRAMLEAMMAAPV-GDDVYGDDPTVNALQDY----AAELSGKEA-------ALFLPTGTQANLVALLSHCER-------   72 (333)
T ss_pred             CCHHHHHHHHhccC-CCcccCCCHHHHHHHHH----HHHHhCCCe-------EEEeCchHHHHHHHHHHhcCC-------
Confidence            55777777766443 33344456677777777    788889875       689999999998888875431       


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHH-Hhhhc-ceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccC
Q 017569          148 QGKPYDKPNIVTGANVQVC-WEKF-ARYFE-VELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s-~~~~-~~~~G-~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (369)
                            +++|+++.++|.. +... +...| +.++.+++++ ++.+|+++|++++++      ++++|++++|+  +|.+
T Consensus        73 ------gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v  143 (333)
T PRK10534         73 ------GEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA-DGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKV  143 (333)
T ss_pred             ------CCeeEEechhhhhHhcCCchHHhcCceEEeecCCC-CCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCee
Confidence                  3678888888854 3322 34444 6777777765 489999999999976      57888888554  5998


Q ss_pred             CCHH---HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          219 EDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       219 ~~l~---~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      .|.+   +|.++|+++      ++++++|+||............ ..+ ....|.++++++|.++.+  .|+.++.+++.
T Consensus       144 ~~~~~l~~i~~~~~~~------~~~lvvDEA~~~~~~~~~~~~~-~~~-~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~  213 (333)
T PRK10534        144 LPREYLKQAWEFTRER------NLALHVDGARIFNAVVAYGCEL-KEI-TQYCDSFTICLSKGLGTP--VGSLLVGNRDY  213 (333)
T ss_pred             cCHHHHHHHHHHHHHc------CCeEEeeHHHHHHHHHHcCCCH-HHH-HhcCCEEEEEeEcCCCCc--ccceEEcCHHH
Confidence            6655   556788888      9999999997632110001111 111 123466777899987655  45433444443


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      . ..+..-....+.         .-+ ...+.+.+++..+.. ..+.+ +..+..+++.++|++.|+
T Consensus       214 i-~~~~~~~~~~~~---------~~~-~~~~~~a~~~~~l~~-~~~~~~~~~~~r~~l~~~L~~~g~  268 (333)
T PRK10534        214 I-KRARRWRKMTGG---------GMR-QAGILAAAGLYALKH-NVARLQEDHDNAAWLAEQLREAGA  268 (333)
T ss_pred             H-HHHHHHHHHhCC---------chh-hHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3 222110000000         000 112333334444421 12333 555667899999998774

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.67  E-value=1.1e-14  Score=142.57  Aligned_cols=252  Identities=11%  Similarity=-0.043  Sum_probs=160.2

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      +-..+|.+.+++.++++........+.   +......++.+.+++++|.+.       .+++++|++||..++..+... 
T Consensus        57 gl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~-------~l~~~sG~~an~~ai~~l~~~-  128 (402)
T TIGR01821        57 GMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKES-------ALVFTSGYVANDATLATLAKI-  128 (402)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCe-------EEEECchHHHHHHHHHHhhCC-
Confidence            334568888888888765433222111   223344456666999998653       677778899998888776431 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCccc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGE  217 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~  217 (369)
                                ..+..|+.....|.+....+...|+++..++.      .|++++++.++    +++++|+++.++|++|.
T Consensus       129 ----------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~  192 (402)
T TIGR01821       129 ----------IPGCVIFSDELNHASMIEGIRHSGAEKFIFRH------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGD  192 (402)
T ss_pred             ----------CCCCEEEEcchHhHHHHHHHHHcCCeEEEECC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence                      01346666667899988888888887665542      25677777775    25789999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccc-cccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      +.|+++|.++|+++      ++++++|+||+.+.. +.-..- ..... ...+|.+..+..|.++++.  |+++.++ +.
T Consensus       193 ~~~l~~i~~l~~~~------~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~G--G~i~~~~-~~  262 (402)
T TIGR01821       193 IAPIEEICDLADKY------GALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGVVG--GYIAASR-KL  262 (402)
T ss_pred             ccCHHHHHHHHHHc------CCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhccCC--ceeecCH-HH
Confidence            99999999999999      999999999985443 111100 00111 2246888778999986433  5665432 22


Q ss_pred             ccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . +.+.. ...|.      +  .++.+....+++.++|+.+..+  ..+  +..++.+++++.|++.|+
T Consensus       263 ~-~~l~~~~~~~~------~--t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~  320 (402)
T TIGR01821       263 I-DAIRSYAPGFI------F--TTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGI  320 (402)
T ss_pred             H-HHHHHhCcCce------e--cCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCC
Confidence            1 22211 11111      1  1122222344445666666444  333  567899999999998774

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.67  E-value=1.2e-16  Score=148.63  Aligned_cols=249  Identities=17%  Similarity=0.138  Sum_probs=161.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +.|.+.+++.++..... .|+..+.+.++|+.    +++++|.+.       .+++.+||.||..++.+...+       
T Consensus         7 ~~~~m~~a~~~a~~gd~-~Yg~D~~~~~l~~~----i~~l~g~e~-------a~f~~sGT~An~~al~~~~~~-------   67 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGDD-AYGEDPTTARLEER----IAELFGKEA-------ALFVPSGTMANQLALRAHLRP-------   67 (290)
T ss_dssp             S-HHEEHHHHHTTSB-C-CTTSSHHHHHHHHH----HHHHHTSSE-------EEEESSHHHHHHHHHHHHHHT-------
T ss_pred             CCHHHHHHHHccccCCc-ccCCChhHHHHHHH----HHHHcCCCE-------EEEeCCCChHHHHHHHHHHhc-------
Confidence            55777777744433333 46666677677666    889999985       679999999999999998753       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHH---hhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCc-cc
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLT-GE  217 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~t-G~  217 (369)
                            ...|++...+|....+..   .+.|++++.++.+++ +.+|+++|++.+.+      ++++|.++.+++.. |.
T Consensus        68 ------~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~-G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~  140 (290)
T PF01212_consen   68 ------GESVICADTAHIHFDETGAIEELSGAKLIPLPSDDD-GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGT  140 (290)
T ss_dssp             ------TEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTG-TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB
T ss_pred             ------CCceeccccceeeeeccchhhHhcCcEEEECCCccc-CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCe
Confidence                  358999999998655432   457888888887653 89999999999976      46788888887775 55


Q ss_pred             C---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          218 F---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       218 ~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      +   +++++|.++|+++      ++.+|.|||=-+-....... ..-++ ..++|++++++.|.++.|.| ++++.+ ++
T Consensus       141 ~~s~~el~ai~~~a~~~------gl~lhmDGARl~~a~~~~~~-~~~e~-~~~~D~v~~~~tK~~g~~~G-avl~~~-~~  210 (290)
T PF01212_consen  141 VYSLEELRAISELAREH------GLPLHMDGARLANAAAALGV-SLAEI-AAGADSVSFGGTKNGGAPGG-AVLAGN-KE  210 (290)
T ss_dssp             ---HHHHHHHHHHHHHH------T-EEEEEETTHHHHHCHHHH-HHHHH-HTTSSEEEEETTSTT-SSSE-EEEEES-HH
T ss_pred             eCCHHHHHHHHHHHHhC------ceEEEEehhhHHHhhhcccc-cHHHH-hhhCCEEEEEEEcccccccc-eEEEec-hH
Confidence            4   5788999999999      99999999832211110000 01111 35899999999999987775 556554 33


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHH--HH--HHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA--QY--YQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~--~~--~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                      .+...... ..++++...+       .+. ..+  ++  .++..+ ..++... +..++|++|++.|++.|+.
T Consensus       211 ~i~~~~~~-~k~~gg~~~~-------~G~-~~a~~~~~~~~l~~l-~~~~~~~~~~~~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  211 FIAKARRQ-RKRLGGGMRQ-------AGV-LAAAELYQFAALRAL-ELWLERARHANAMAKRLAAGLEALGGV  273 (290)
T ss_dssp             HHHHHHHH-HHHHTHHHHH-------TTH-HHHHHHHHHHHHCHE-ECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred             HHHHHHHH-HHHhccCeee-------cce-eeeechhhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            33222111 1222221100       011 111  12  223222 2345666 8899999999999998864

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=7.2e-16  Score=148.16  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      .++++++++.+|++++     .+++|+|+++++.+++.++..+            .++.|+++.|+|..+...++..|++
T Consensus        60 ~~l~~~~a~~~g~~~~-----~I~~~~Gs~e~i~~~~~~~~~~------------g~~~vli~~P~y~~y~~~~~~~G~~  122 (351)
T PRK01688         60 KAVIENYAAYAGVKPE-----QVLVSRGADEGIELLIRAFCEP------------GKDAILYCPPTYGMYSVSAETIGVE  122 (351)
T ss_pred             HHHHHHHHHHhCCCHH-----HEEEcCCHHHHHHHHHHHhcCC------------CCCEEEEcCCCHHHHHHHHHHcCCE
Confidence            3666779999999863     4899999999999988876432            1268999999999999999999999


Q ss_pred             eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC
Q 017569          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (369)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (369)
                      ++.+|++++ +.+|++++++++ +++++|++++|+||||.+.+.+++.++++..++    +.++++|+||..+..    .
T Consensus       123 ~~~v~~~~~-~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~----~~~vivDEay~~f~~----~  192 (351)
T PRK01688        123 IRTVPTLDN-WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG----KAIVVADEAYIEFCP----Q  192 (351)
T ss_pred             EEEeecCCC-CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC----CcEEEEECchhhcCC----C
Confidence            999999765 899999999988 588999999999999999998888888876421    578999999976431    1


Q ss_pred             Cccccc-c-CCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          258 DLEWDF-R-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       258 ~~~~~~-~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      .....+ . ... =.+.-+..|+++ .+.+.|+++..
T Consensus       193 ~s~~~~~~~~~n-~iv~rSfSK~~glaGlRiGy~i~~  228 (351)
T PRK01688        193 ASLAGWLAEYPH-LVILRTLSKAFALAGLRCGFTLAN  228 (351)
T ss_pred             CChHHHHhhCCC-EEEEecchHhhcCHHHHHhHHhCC
Confidence            000111 1 111 133445788764 55667888763

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.67  E-value=1.1e-14  Score=139.27  Aligned_cols=241  Identities=17%  Similarity=0.093  Sum_probs=169.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ++++.+.+++.+++..-..+|+  +...+++++    +++.+| .+.     ..+++++|++|.+...+++++.+     
T Consensus        35 gp~~~~~~~~~~~~~~~~rYPd--~~~~~l~~a----~a~~~~~~~~-----~~V~~gnGsde~i~~l~~~~~~~-----   98 (356)
T COG0079          35 GPPPKVIEAIRAALDKLNRYPD--PDYRELRAA----LAEYYGVVDP-----ENVLVGNGSDELIELLVRAFVEP-----   98 (356)
T ss_pred             CCCHHHHHHHHHHHHhhccCCC--CcHHHHHHH----HHHHhCCCCc-----ceEEEcCChHHHHHHHHHHhhcC-----
Confidence            4457788888777653222222  345555555    888888 554     34788999999999998888663     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH  225 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~  225 (369)
                              ++.|+++.++|..|...++..|++++.||..+  +.+|++.+.+++++++++|++++||||||..-+.++|.
T Consensus        99 --------gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~  168 (356)
T COG0079          99 --------GDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELR  168 (356)
T ss_pred             --------CCEEEEcCCChHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence                    46899999999999999999999999999886  89999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCc--EEEEcCcc-CCCCCCCeEEEEEeCCCCcccccc-
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVK--SINVSGHK-YGLVYAGVGWVVWRTKDDLPDELV-  301 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D--si~~~~hK-~l~~p~g~g~l~~~~~~~~~~~~~-  301 (369)
                      ++++..++    +.++++|+||..+.-    +. .... +..-+  .+.=+..| ++..+..+|+.+. +++.. ..+. 
T Consensus       169 ~l~~~~~~----~~~vVvDEAY~eF~~----~~-~~~l-~~~~~nlivlRTfSKa~gLAGlRlGy~ia-~~~~i-~~l~~  236 (356)
T COG0079         169 ALLEALPE----GGLVVIDEAYIEFSP----ES-SLEL-LKYPPNLIVLRTFSKAFGLAGLRVGYAIA-NPELI-AALNK  236 (356)
T ss_pred             HHHHhCCC----CcEEEEeCchhhcCC----ch-hhhh-ccCCCCEEEEEecHHhhhcchhceeeccC-CHHHH-HHHHH
Confidence            99997632    789999999987543    11 0110 00112  22223567 5677788898654 33333 2221 


Q ss_pred             cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH---HhhHHHHHHHHHHHhcC
Q 017569          302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF---CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       302 ~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~---~~~~~a~~l~~~L~~~g  360 (369)
                      ...+|.               ...+++.++...+....+.+.   +..+-.+++.+.|+.+|
T Consensus       237 vr~p~~---------------v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         237 VRPPFN---------------VSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             hcCCCC---------------CCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            111221               124455555565554444333   77788889999999988

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=1.1e-15  Score=147.15  Aligned_cols=220  Identities=16%  Similarity=0.038  Sum_probs=149.4

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~  171 (369)
                      ...+|+++    +++.+|+++     ..+++|+|+++++.+++.++..+        |    +++|+++.|+|..+...+
T Consensus        61 ~~~~Lr~a----ia~~~~~~~-----~~I~it~Gs~~~i~~~~~~~~~~--------g----~d~vlv~~P~y~~y~~~~  119 (354)
T PRK04635         61 QPPELINA----YSAYAGVAP-----EQILTSRGADEAIELLIRAFCEP--------G----QDSIACFGPTYGMYAISA  119 (354)
T ss_pred             CHHHHHHH----HHHHhCcCH-----HHEEEeCCHHHHHHHHHHHhcCC--------C----CCeEEEcCCChHHHHHHH
Confidence            34555555    777889886     34899999999999988877542        1    268999999999999999


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      +..|++++.+|++++ +.+|++.++ .+ +++++|++++|+||||.+.+.+++.++++...     ++++++|++|..+.
T Consensus       120 ~~~g~~v~~v~~~~~-~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~-----~~~vivDeay~~~~  191 (354)
T PRK04635        120 ETFNVGVKALPLTAD-YQLPLDYIE-QL-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP-----DAIVVVDEAYIEFC  191 (354)
T ss_pred             HHcCCEEEEEecCCC-CCCCHHHHH-hc-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC-----CcEEEEeCchHhhc
Confidence            999999999999764 889999887 34 68999999999999999999999999998742     68999999997643


Q ss_pred             ccccCCCcccccc--CCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHH
Q 017569          252 APFLYPDLEWDFR--LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ  328 (369)
Q Consensus       252 ~~~~~~~~~~~~~--~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~  328 (369)
                      .    .....++.  ..++ .+.-+.+|+++ .+.+.|+++..+ +.. +.+...    .   ..+    +-   ....+
T Consensus       192 ~----~~s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~~i~~~-~~~-~~l~~~----~---~~~----~~---~~~~~  250 (354)
T PRK04635        192 P----EYSVADLLASYPNL-VVLRTLSKAFALAGARCGFTLANE-ELI-EILMRV----I---APY----PV---PLPVS  250 (354)
T ss_pred             c----CcchHHHHhhCCCE-EEEechHHHhhhhHHHHhhhhCCH-HHH-HHHHhh----c---CCC----CC---CHHHH
Confidence            2    11111111  1222 34556899974 567789988643 222 221110    0   001    11   12223


Q ss_pred             HHHHHHhcHhhHHHH-----HhhHHHHHHHHHHHhcCC
Q 017569          329 YYQFIRLGFEVIPSF-----CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       329 ~~~l~~lg~~G~~~~-----~~~~~a~~l~~~L~~~g~  361 (369)
                      .+++..+...|.+.+     +..+..+++.+.|++.|.
T Consensus       251 ~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  288 (354)
T PRK04635        251 EIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGG  288 (354)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            344455533333322     455556788889988763

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.67  E-value=6.8e-15  Score=141.94  Aligned_cols=221  Identities=18%  Similarity=0.067  Sum_probs=153.8

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      |....+|+.    ++++.|.+.       ...+++|+.|+..++.++...             ++.|+++...|......
T Consensus        55 Pt~~~le~~----la~Le~g~~-------a~~~~SGmaAi~~~l~~ll~~-------------Gd~iv~~~~~Y~~t~~~  110 (386)
T PF01053_consen   55 PTVRALEQR----LAALEGGED-------ALLFSSGMAAISAALLALLKP-------------GDHIVASDDLYGGTYRL  110 (386)
T ss_dssp             HHHHHHHHH----HHHHHT-SE-------EEEESSHHHHHHHHHHHHS-T-------------TBEEEEESSSSHHHHHH
T ss_pred             ccHHHHHHH----HHHhhcccc-------eeeccchHHHHHHHHHhhccc-------------CCceEecCCccCcchhh
Confidence            455566655    889988864       788899999999988887652             46888888877655444


Q ss_pred             H----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC-ceEEeec
Q 017569          171 A----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDA  245 (369)
Q Consensus       171 ~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~-~~l~vD~  245 (369)
                      +    ...|+++.+++..      |+++|+++++++|++|++-.|+||+..+.|+++|+++|+++      + ++++||.
T Consensus       111 ~~~~l~~~gv~v~~~d~~------d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~------g~~~~vVDn  178 (386)
T PF01053_consen  111 LEELLPRFGVEVTFVDPT------DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEH------GDILVVVDN  178 (386)
T ss_dssp             HHHCHHHTTSEEEEESTT------SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHT------TT-EEEEEC
T ss_pred             hhhhhcccCcEEEEeCch------hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHh------CCceEEeec
Confidence            4    3468888777542      68999999999999999999999999999999999999999      8 9999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++.++.  ..|   +.   .++|.+.-|.-|++++...  .|++++++.......+.......+.            ..
T Consensus       179 T~atp~~--~~p---L~---~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~------------~~  238 (386)
T PF01053_consen  179 TFATPYN--QNP---LE---LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGA------------TL  238 (386)
T ss_dssp             TTTHTTT--C-G---GG---GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-------------B-
T ss_pred             cccceee--ecc---Cc---CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCc------------cc
Confidence            9886433  222   22   2799999999999976543  4777776522221111111111111            22


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|..++.+..-..+-.++.++|+.++++|++.+.+++-+|
T Consensus       239 ~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~y  282 (386)
T PF01053_consen  239 SPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYY  282 (386)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            46777877776554444422999999999999999998876554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=9.2e-15  Score=139.69  Aligned_cols=186  Identities=16%  Similarity=0.153  Sum_probs=136.4

Q ss_pred             CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ++++.+.+.+.+++.. +...|. .++..+++++    +++++|+++     ..+++|+|+++++...+.++  .     
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~----ia~~~~~~~-----~~I~~t~G~~~~l~~~~~~~--~-----   93 (337)
T PRK03967         31 DLPEELKEEIFEELKRVPFNRYP-HITSDPLREA----IAEFYGLDA-----ENIAVGNGSDELISYLVKLF--E-----   93 (337)
T ss_pred             CCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHH----HHHHhCcCc-----ceEEEcCCHHHHHHHHHHHh--C-----
Confidence            3456677777777753 334443 3466666666    666667765     34889999999987655443  1     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH  225 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~  225 (369)
                              ++.|+++.++|..+...++..|++++.++++++ +.+|++.+++++ ++++++++++|+||||.+.+.++|.
T Consensus        94 --------gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~  163 (337)
T PRK03967         94 --------GKHIVITPPTFGMYSFYAKLNGIPVIDVPLKED-FTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEIL  163 (337)
T ss_pred             --------CCeEEEeCCChHHHHHHHHHcCCeEEEeecCCC-CCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHH
Confidence                    468999999999888888999999999999764 899999998875 5678888999999999999999999


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      +++ ++      ++++++|++|..+..    ........ ...+ .+..+.-|.++ ....+|+++..
T Consensus       164 ~i~-~~------~~~ii~De~y~~~~~----~~~~~~~~~~~~v-i~l~S~SK~~~l~GlRiG~iv~~  219 (337)
T PRK03967        164 KVL-ET------GKPVVLDEAYAEFSG----KSLIGLIDEYPNL-ILLRTFSKAFGLAGIRAGYAIAN  219 (337)
T ss_pred             HHH-hc------CCEEEEECchhhhcc----cchHHHHhhCCCE-EEEecchHhhcchhhhheeeecC
Confidence            999 47      999999999986431    11000111 1121 33456889886 66889999873

>PLN02397 aspartate transaminase

Probab=99.66  E-value=4.2e-15  Score=146.26  Aligned_cols=212  Identities=14%  Similarity=0.007  Sum_probs=136.5

Q ss_pred             ccccccc-cCCC-hH----HHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH-
Q 017569           58 LNLASFV-TTWM-EP----ECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA-  129 (369)
Q Consensus        58 ~~l~~~~-~~~~-~~----~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a-  129 (369)
                      ++++.+. +++. .+    .+.++....++.+ ...|....|..+|++++.+|+.+..+....+ ......-+.+|+.+ 
T Consensus        51 l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~-~~i~~~~i~~g~Ga~  129 (423)
T PLN02397         51 LNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKE-NRVATVQCLSGTGSL  129 (423)
T ss_pred             EecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhc-CeeEeeecccchHHH
Confidence            5666553 4432 23    3444433333333 3357777899999999888886543222111 00001213444434 


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHh---hcCc
Q 017569          130 -IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---ENTI  204 (369)
Q Consensus       130 -~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~---~~~~  204 (369)
                       +..++.....             .+++|++++|+|+.+...++..|++++.+|+ +++++.+|++.+++.+.   ++++
T Consensus       130 ~l~~~~~~~~~-------------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~  196 (423)
T PLN02397        130 RLGAEFLARFY-------------PGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSF  196 (423)
T ss_pred             HHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCE
Confidence             3333333322             2479999999999999999999999999998 44458999999988876   4678


Q ss_pred             EEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeeccccccccccc-CCCcc-ccccCCCCcEEEE-cCccC
Q 017569          205 CVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLE-WDFRLPLVKSINV-SGHKY  278 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~-~~~~~~~~Dsi~~-~~hK~  278 (369)
                      ++++++|+||||.+-   .+++|+++|+++      ++|+++|.+|..+...-. .+... ..+...+-..+++ +.-|.
T Consensus       197 ~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~------~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~  270 (423)
T PLN02397        197 VLLHACAHNPTGVDPTPEQWEQISDLIKSK------NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKN  270 (423)
T ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECccc
Confidence            888899999999994   577889999999      999999999987653100 00001 1111112124444 57888


Q ss_pred             CC-CCCCeEEEE
Q 017569          279 GL-VYAGVGWVV  289 (369)
Q Consensus       279 l~-~p~g~g~l~  289 (369)
                      ++ .++++|+++
T Consensus       271 ~~~~G~RvG~~v  282 (423)
T PLN02397        271 MGLYGERVGALS  282 (423)
T ss_pred             CCCccccceEEE
Confidence            76 589999986

>PRK07908 hypothetical protein; Provisional

Probab=99.66  E-value=1e-14  Score=139.95  Aligned_cols=190  Identities=13%  Similarity=0.008  Sum_probs=134.1

Q ss_pred             cccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      .|....+. ++++.+.+++.++++.. ..|....+..+++++    +++.+|+++     ..+++|+|+++++.+++. +
T Consensus        26 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~a----ia~~~~~~~-----~~I~it~Ga~~al~~~~~-l   94 (349)
T PRK07908         26 DFAVNVRHDTPPEWLRERLAARLGDL-AAYPSTEDERRARAA----VAARHGRTP-----DEVLLLAGAAEGFALLAR-L   94 (349)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHhhHh-hcCCCccchHHHHHH----HHHHhCcCh-----hhEEECCCHHHHHHHHHh-c
Confidence            34433333 34566788888776532 233333455566555    666678775     348999999999987666 2


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                       .              ++.+++..|++..+...++..|++++.+|++++ +.+|++++    +++++++++++|+||||.
T Consensus        95 -~--------------~~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~-~~~d~~~l----~~~~~~i~l~np~NPTG~  154 (349)
T PRK07908         95 -R--------------PRRAAVVHPSFTEPEAALRAAGIPVHRVVLDPP-FRLDPAAV----PDDADLVVIGNPTNPTSV  154 (349)
T ss_pred             -C--------------CCeEEEeCCCChHHHHHHHHcCCEEEeeccCcc-cCcChhHh----ccCCCEEEEcCCCCCCCC
Confidence             2              135667789998888899999999999999865 88998854    457889999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEE-cCccCCC-CCCCeEEEEEe
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINV-SGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~-~~hK~l~-~p~g~g~l~~~  291 (369)
                      +.+.++|.++|+ +      +.++++|++|+.+..   ..  ...+. ...-+.+.+ +.+|.++ .+..+|+++..
T Consensus       155 ~~~~~~l~~l~~-~------~~~iIvDe~y~~~~~---~~--~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~  219 (349)
T PRK07908        155 LHPAEQLLALRR-P------GRILVVDEAFADAVP---GE--PESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA  219 (349)
T ss_pred             CcCHHHHHHHHh-c------CCEEEEECcchhhcc---CC--ccccccccCCCEEEEeecccccCCccceeeeeecC
Confidence            999999999995 5      678889999986431   11  11111 112245666 6889764 66788999864

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.66  E-value=1.2e-14  Score=140.32  Aligned_cols=269  Identities=12%  Similarity=-0.012  Sum_probs=166.6

Q ss_pred             HHHHHHHhhhhcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCCC
Q 017569           42 AYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAV  119 (369)
Q Consensus        42 i~~~l~~~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~  119 (369)
                      .+..+.......+++.++|....|..+ ++.+.+++.+..+.  ..|....+..++++++.+|+.+.+|.+ .+.   ..
T Consensus        14 ~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~---~~   88 (364)
T PRK07865         14 TLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADA--PGYPTTAGTPELREAIVGWLARRRGVTGLDP---AA   88 (364)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh--CCCCCccCCHHHHHHHHHHHHHHcCCCCCCc---cc
Confidence            333343332334445566666655433 46677777665432  245555678899999999999988865 321   35


Q ss_pred             eEEeCCchHHHHHHHHHH-HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHH
Q 017569          120 GVGTVGSSEAIMLAGLAF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVEL  198 (369)
Q Consensus       120 ~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~  198 (369)
                      +++|+|+++++..++.++ ..             .++.|++++++|+.+..+++.+|+++..++.        +++++. 
T Consensus        89 I~it~G~~~~i~~~~~~l~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~--------~~~l~~-  146 (364)
T PRK07865         89 VLPVIGSKELVAWLPTLLGLG-------------PGDVVVIPELAYPTYEVGARLAGATVVRADS--------LTELGP-  146 (364)
T ss_pred             EEEccChHHHHHHHHHHHcCC-------------CCCEEEECCCCcccHHHHHHhcCCEEEecCC--------hhhCCc-
Confidence            899999999998766654 22             1478999999999999999999998877642        223322 


Q ss_pred             HhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccC---C-CCcE
Q 017569          199 VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRL---P-LVKS  270 (369)
Q Consensus       199 i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~---~-~~Ds  270 (369)
                        +++++|+++.|+||||.+.+   +++|.++|+++      ++++++|++|+.+...  .+... .....   . .-..
T Consensus       147 --~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~~i  216 (364)
T PRK07865        147 --QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARER------GAVVASDECYLELGWD--AEPVSILDPRVCGGDHTGLL  216 (364)
T ss_pred             --ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhhhccC--CCCCccccccccCCccceEE
Confidence              56889999999999998854   67888999999      9999999999864431  11000 00000   0 1124


Q ss_pred             EEEcCccCC-CCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--Hhh
Q 017569          271 INVSGHKYG-LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCV  346 (369)
Q Consensus       271 i~~~~hK~l-~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~  346 (369)
                      ++.+..|.+ ....++|+++.. ++.. ..+.......     .    .+.   ..+.+.++...+..+. +++.  ...
T Consensus       217 ~~~S~SK~~~~~GlRiG~i~~~-~~~~-~~~~~~~~~~-----~----~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~  282 (364)
T PRK07865        217 AVHSLSKQSNLAGYRAGFVAGD-PALV-AELLEVRKHA-----G----MMV---PAPVQAAMVAALGDDAHVREQRERYA  282 (364)
T ss_pred             EEeechhccCCCceeeEEEecC-HHHH-HHHHHHHHhc-----C----CCc---CHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            555688986 456778988753 3222 2221100000     0    011   1223333344443322 3333  667


Q ss_pred             HHHHHHHHHHHhcCC
Q 017569          347 DHKKLSSFFVIHSSY  361 (369)
Q Consensus       347 ~~a~~l~~~L~~~g~  361 (369)
                      +..+++.+.|++.|+
T Consensus       283 ~~~~~l~~~L~~~g~  297 (364)
T PRK07865        283 RRRAVLRPALEAAGF  297 (364)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            778888888887663

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.66  E-value=6.7e-15  Score=141.77  Aligned_cols=186  Identities=20%  Similarity=0.168  Sum_probs=135.3

Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC
Q 017569           83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN  162 (369)
Q Consensus        83 n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~  162 (369)
                      ....|....+..++++++.+++.+-.|.+.+.  ....++++|+.+++..++..+...            .++.|+++.|
T Consensus        36 ~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~~i~~~~G~~~~~~~~~~~~~~~------------~~~~vlv~~P  101 (363)
T PF00155_consen   36 SFLGYPPPQGYPELREAIADFLGRRYGVPVDP--EANILVTSGAQAALFLLLRLLKIN------------PGDTVLVPDP  101 (363)
T ss_dssp             GCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTG--GEGEEEESHHHHHHHHHHHHHHSS------------TTSEEEEEES
T ss_pred             ccccCCCchhhHHHHHHHHHHhhhccCccccc--ceEEEEecccccchhhhhhccccc------------ccccceecCC
Confidence            34556666789999999888888666666532  124667766666665555554210            1468999999


Q ss_pred             CcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhh
Q 017569          163 VQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKN  232 (369)
Q Consensus       163 ~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~  232 (369)
                      .|..+...++..|+.++.+|++ ++++.+|+++|++.+++      ++++|+++.|+||||..-+   +++|+++|+++ 
T Consensus       102 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~-  180 (363)
T PF00155_consen  102 CYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREY-  180 (363)
T ss_dssp             SSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHT-
T ss_pred             ccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhccc-
Confidence            9999999999999999999975 34589999999999998      5789999999999999855   55666669999 


Q ss_pred             hccCCCceEEeecccccccccccCCCc---cccccCCCCc-EEEEcCccCCCC-CCCeEEEEEe
Q 017569          233 EETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRLPLVK-SINVSGHKYGLV-YAGVGWVVWR  291 (369)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~~~~~~~~D-si~~~~hK~l~~-p~g~g~l~~~  291 (369)
                           ++++++|.+|+.+...  .+..   ...+ ....+ .+..|..|.++. ....|++++.
T Consensus       181 -----~~~ii~De~y~~~~~~--~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRvG~i~~~  236 (363)
T PF00155_consen  181 -----NIIIIVDEAYSDLIFG--DPDFGPIRSLL-DEDDNVIVVGSLSKSFGLPGLRVGYIVAP  236 (363)
T ss_dssp             -----TSEEEEEETTTTGBSS--SSHTHHHHGHH-TTTSTEEEEEESTTTTTSGGGTEEEEEEE
T ss_pred             -----ccceeeeeceeccccC--CCccCcccccc-cccccceeeeeccccccccccccccccch
Confidence                 9999999999986651  1110   1112 22333 566679997654 4688999983

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=1.6e-14  Score=139.13  Aligned_cols=202  Identities=14%  Similarity=0.067  Sum_probs=141.5

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+...+. .+++.+.+.+.+++.. ...|. .++..+|+++    +++.+++++     ..+++|+|+++++.+++.
T Consensus        32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~-~~~~~~lr~~----ia~~~~~~~-----~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         32 LVKLSSNENPHGPSPAAVEAIREAAER-VHSYP-KASHADLTAA----LADRWDVSP-----EQVWLANGGDGALDYLAR  100 (357)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhh-hhcCC-CCCHHHHHHH----HHHHhCCCc-----ceEEECCCHHHHHHHHHH
Confidence            3455554333 3456677777766643 23332 3455566655    566667775     348999999999988888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ++.++             ++.|++++|+|..+...+...|++++.+|++. +++.+|.+++++.+ +++++|+++.|+||
T Consensus       101 ~~~~~-------------gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NP  166 (357)
T PRK14809        101 AMLDP-------------GDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNP  166 (357)
T ss_pred             HhcCC-------------CCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCC
Confidence            76542             46899999999888888888999999999864 45788998888776 46789999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEE-EEcCccCCC-CCCCeEEEEEe
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI-NVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi-~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      ||.+.+.+++.++++...+    ++++++|++|+.+..   .+.....+. ..-..+ ..+.-|.++ ....+|+++..
T Consensus       167 TG~~~s~~~~~~l~~~~~~----~~~iI~De~y~~~~~---~~~~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~~  237 (357)
T PRK14809        167 TGSEIPLDEVEALAERTDE----ETLVVVDEAYGEFAE---RPSAVALVE-ERDDVAVLRTFSKAYGLAGLRLGYAVVP  237 (357)
T ss_pred             CCcCCCHHHHHHHHHhCcc----CcEEEEechhhhccC---CchhHHHHh-hCCCEEEEecchhHhcCcchhheeeecC
Confidence            9999998888888876521    679999999987542   111000111 111233 345778875 67889999874

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=1.1e-14  Score=141.00  Aligned_cols=253  Identities=11%  Similarity=-0.001  Sum_probs=163.5

Q ss_pred             cccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +|....+. ++++.+.+++.+++... ..|.. +...+|+++    +++.+++++     ..+++|+|+++++..++.++
T Consensus        36 ~l~~~~~~~~~~~~~~~a~~~~~~~~-~~Y~~-~~~~~Lr~~----ia~~~~~~~-----~~I~it~G~~~~l~~~~~~~  104 (369)
T PRK08153         36 RIGANESGFGPSPSVIAAMREAAAEI-WKYGD-PENHDLRHA----LAAHHGVAP-----ENIMVGEGIDGLLGLIVRLY  104 (369)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHh-hcCCC-CccHHHHHH----HHHHhCCCH-----HHEEEcCCHHHHHHHHHHHh
Confidence            44444333 34567777777665422 22221 234555555    666678765     24899999999998887776


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTG  216 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG  216 (369)
                      .++             ++.|++++++|+.+...++..|++++.+|++.+  .+|++++++.+. +++++|+++.|+||||
T Consensus       105 ~~~-------------gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~--~~~~~~l~~~~~~~~~~~i~l~~P~NPtG  169 (369)
T PRK08153        105 VEP-------------GDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD--REDLDALLDAARRENAPLVYLANPDNPMG  169 (369)
T ss_pred             cCC-------------CCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC--CCCHHHHHHHhcccCCcEEEEeCCCCCCC
Confidence            442             478999999999999888899999999998654  589999987764 5788999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCc-EEEEcCccCCC-CCCCeEEEEEeCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVK-SINVSGHKYGL-VYAGVGWVVWRTKD  294 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~D-si~~~~hK~l~-~p~g~g~l~~~~~~  294 (369)
                      .+.+.+++.++++..++    ++++++|++|+.+...   ... ..+....-+ .+..+..|.++ .+...|+++... +
T Consensus       170 ~~~~~~~l~~l~~~~~~----~~~lI~DE~y~~~~~~---~~~-~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~-~  240 (369)
T PRK08153        170 SWHPAADIVAFIEALPE----TTLLVLDEAYCETAPA---GAA-PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP-G  240 (369)
T ss_pred             CCCCHHHHHHHHHhCCC----CcEEEEeCchhhhcCc---ccc-hhhhhcCCCEEEEecchHhccCcchheeeeecCH-H
Confidence            99999888888876521    7899999999864321   100 111111112 33445778875 677889998742 2


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .. +.+.....       .+    +   ...+.++++...+..+. +++.  ...++.+++.+.|++.|+
T Consensus       241 ~~-~~l~~~~~-------~~----~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~  295 (369)
T PRK08153        241 TI-KAFDKVRN-------HF----G---MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGL  295 (369)
T ss_pred             HH-HHHHHhhc-------CC----C---CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            22 22211000       01    1   12344555555554333 3333  566777788888887764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.66  E-value=9.9e-15  Score=134.56  Aligned_cols=230  Identities=17%  Similarity=0.137  Sum_probs=155.2

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCC----Ccc
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN----VQV  165 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~----~h~  165 (369)
                      .|-...||++    ++.+-|--.       .+.+.+|..|+.+++..+...             ++.|+.+..    ++.
T Consensus        61 NPT~~vlE~R----iAaLEGG~a-------a~a~aSG~AA~~~ai~~la~a-------------GD~iVss~~LYGGT~~  116 (426)
T COG2873          61 NPTTDVLEER----IAALEGGVA-------ALAVASGQAAITYAILNLAGA-------------GDNIVSSSKLYGGTYN  116 (426)
T ss_pred             CchHHHHHHH----HHHhhcchh-------hhhhccchHHHHHHHHHhccC-------------CCeeEeeccccCchHH
Confidence            4667778877    777765542       678889999999999987653             467776654    334


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      -+....+.+|+++++|+.+      |++.++++|+++|++|++..-.||.+.+-|+++|+++||++      +++++||.
T Consensus       117 lf~~tl~~~Gi~v~fvd~~------d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~------gvpliVDN  184 (426)
T COG2873         117 LFSHTLKRLGIEVRFVDPD------DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRH------GVPLIVDN  184 (426)
T ss_pred             HHHHHHHhcCcEEEEeCCC------CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHc------CCcEEEec
Confidence            4566678899999999754      58999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCC--CCc-cccc----ccccCccCCCCCC-cc-
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTK--DDL-PDEL----VFHINYLGSDQPT-FT-  315 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~--~~~-~~~~----~~~~~y~~~~~~~-~~-  315 (369)
                      ..+..++  ++|   ++   .++|.++-|.-||+++.. ..|-+++-..  ++. ...+    ..++.|-+-...+ +. 
T Consensus       185 T~atpyl--~rP---~~---hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~  256 (426)
T COG2873         185 TFATPYL--CRP---IE---HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGN  256 (426)
T ss_pred             CCCccee--cch---hh---cCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhccc
Confidence            9886543  333   22   389999999999986643 2344444222  111 0010    0122232211100 00 


Q ss_pred             --------ccCCcc---hhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCc
Q 017569          316 --------LNFSKG---SSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       316 --------l~~tr~---~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~  363 (369)
                              ..+-|.   ...+...|..++-+..-.++.-|+.+||..+++.|+.++.++
T Consensus       257 ~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~  315 (426)
T COG2873         257 AAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVA  315 (426)
T ss_pred             HHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCee
Confidence                    011121   123445555444443333332299999999999999988765

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.66  E-value=5.5e-14  Score=132.01  Aligned_cols=314  Identities=12%  Similarity=0.037  Sum_probs=197.9

Q ss_pred             cccccccc-chhHhhh--CCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccc-cccCCChHHHH-HHHH--HHhcc-C
Q 017569           12 EILSSTFA-SRYVRAA--IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLAS-FVTTWMEPECD-KLVM--ASINK-N   83 (369)
Q Consensus        12 ~~~~~~~~-~~~~~~~--~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~-~~~~~~~~~v~-~~~~--~~~~~-n   83 (369)
                      ++++++|. ..|..-+  .+...-...+.++.++++.++.+...|.....-++. +-.+..|+.+. .++.  +.+.. .
T Consensus        29 ~Sld~L~~~~IP~~Ir~~~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYT  108 (450)
T COG0403          29 SSLDELFSQDIPPSIRKKLDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYT  108 (450)
T ss_pred             CCHHHHhhccCCHHHHhcccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCccccccCC
Confidence            56788888 5554222  222222334569999999999987766533221232 23334455554 3333  12222 2


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC
Q 017569           84 YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV  163 (369)
Q Consensus        84 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~  163 (369)
                      +++++.++|.-+...+.+.++++|.|++..     +...--++|.+--.++++.|..          +.++.+++++...
T Consensus       109 PYQpEISQGrLqaLfefQtlv~dLTGm~VA-----NASm~DeaTAaAEAm~ma~r~~----------k~k~~~~~V~~~v  173 (450)
T COG0403         109 PYQPEISQGRLEALFEFQTLVADLTGLDVA-----NASMLDEATAAAEAMLMAKRVT----------KKKRNKFLVPKDV  173 (450)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHhCCCcc-----cchhhhhHHHHHHHHHHHHHhh----------cCcCceEEecCCC
Confidence            444455667666667888999999999963     3455556664443333433332          1124689999999


Q ss_pred             cchHHHHHhh----hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc-cCCCHHHHHHHHHHhhhccCCC
Q 017569          164 QVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       164 h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG-~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      |+.....++.    +|++++.++.+      |.++|+++.+.++.++++.+|++. | ...++.+|.+.+|++      +
T Consensus       174 hpqt~~Vl~Tra~~~g~~i~~~~~~------d~~~l~~~~~~~~~gv~vQyP~~~-G~~~~d~~~l~~~~h~~------~  240 (450)
T COG0403         174 HPQTLDVLRTRAEGLGIEIEVVDAD------DLDDLESADDGDVFGVLVQYPNTF-GIVEEDLRALIEAAHSA------G  240 (450)
T ss_pred             CHHHHHHHHhhcccCceEEEEeccc------hhhhhhhccccCeEEEEEecCCCC-CccchhHHHHHHHHhhc------C
Confidence            9987777654    35555555544      778888883347899999999866 6 677899999999999      8


Q ss_pred             ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC----CCCCCeEEEEEeCCCC--ccccccc-ccCccCCCC
Q 017569          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG----LVYAGVGWVVWRTKDD--LPDELVF-HINYLGSDQ  311 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l----~~p~g~g~l~~~~~~~--~~~~~~~-~~~y~~~~~  311 (369)
                      .+++|=+=--.  +..+.|  +-   -.|+|.++.+++-++    ++++.+|++.+|++-.  .+..+.. +.+-.+...
T Consensus       241 al~~v~aDpla--L~LL~p--PG---e~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A  313 (450)
T COG0403         241 ALVIVAADPLA--LGLLKP--PG---EFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRA  313 (450)
T ss_pred             CEEEEEechhH--hhccCC--cc---ccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCch
Confidence            87775321111  111222  11   238999999999984    5556688999886421  1111110 111111110


Q ss_pred             CCccc---------------cCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          312 PTFTL---------------NFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       312 ~~~~l---------------~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ...+|               -||.....++..-+++.++|.+|++++  +.++++.||+++|++.+
T Consensus       314 ~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~  379 (450)
T COG0403         314 FRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG  379 (450)
T ss_pred             hhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            00111               288888777888888899999999999  99999999999999655

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.65  E-value=3.2e-15  Score=143.59  Aligned_cols=236  Identities=10%  Similarity=0.027  Sum_probs=160.0

Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH
Q 017569           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE  168 (369)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~  168 (369)
                      .++...++-+++.+.+.++++.+.+   ....+++.|||.++-.++..+...            .+.+|++....-..+.
T Consensus        33 Rs~~F~~i~~e~~~~L~~l~~~~~~---~~v~~l~GsGT~a~Eaa~~nl~~~------------~g~~vLv~g~FG~r~~   97 (374)
T TIGR01365        33 RSKLGKEKLAEAIKKTREMLGVPAD---YLIGIVPASDTGAVEMALWSMLGC------------RGVDVLAWESFGKGWV   97 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCC---cEEEEECCchHHHHHHHHHHcCCC------------CCCeEEEECHHHHHHH
Confidence            4677888999999999999998632   123566889999998888876531            1346666542112234


Q ss_pred             -HHHhhhcce-eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          169 -KFARYFEVE-LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       169 -~~~~~~G~~-v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                       ++++.+|++ +..++.+.. -.+|+++++.  +   +.|.+++..|.||...|+++|++.+  +      +..++||+.
T Consensus        98 ~eia~~~g~~~v~~l~~~~g-~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~------~~lliVDav  163 (374)
T TIGR01365        98 TDVTKQLKLPDVRVLEAEYG-KLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--R------EGLTICDAT  163 (374)
T ss_pred             HHHHHhcCCCCcEEEcCCCC-CCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--C------CCcEEEEcc
Confidence             788889994 888876653 5889999873  1   2367999999999999997666322  5      789999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccc-cc--c-cCccCCCC--------CCc
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL-VF--H-INYLGSDQ--------PTF  314 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~-~~--~-~~y~~~~~--------~~~  314 (369)
                      .+.+..|       ++++  ++|.+..++||++++|+|.|+++++++.+..... ..  + +.|+....        ...
T Consensus       164 Ss~g~~~-------l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  234 (374)
T TIGR01365       164 SAAFAQD-------LDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEG  234 (374)
T ss_pred             chhcCCC-------CChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcC
Confidence            8766552       3333  5999999999999999999999998764321010 00  0 01111000        011


Q ss_pred             cccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          315 TLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       315 ~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ....|.+.....++..+|+.+..+ |++.+  |+.++++.+++.++++|++
T Consensus       235 ~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l  285 (374)
T TIGR01365       235 STINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWI  285 (374)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            122344343334444445555565 89999  9999999999999999954

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.65  E-value=3.6e-14  Score=135.83  Aligned_cols=204  Identities=16%  Similarity=0.061  Sum_probs=138.7

Q ss_pred             HHHHHHHHHhhhhcC-CCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 017569           40 EAAYQVINDELMLDG-NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~-~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (369)
                      ++.++.+++....-+ .|-+   .|..-..+|.+.++..++++...       +..++.+++.+.+++++|.+++     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~ylgl~~~~~~~~~~~~~~~~~~-------g~~~~~~~Le~~lA~~~g~~~e-----   72 (346)
T TIGR03576         8 EKALEIIREKISRGGRDSLY---DLTGLAGGFKIDEEDLELLETYV-------GPAIFEEKVQELGREHLGGPEE-----   72 (346)
T ss_pred             HHHHHHHHHHHhccCCcccc---ccccCCCChhHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCcc-----
Confidence            445566665554333 2322   23333445667777777765432       4557778888889999999652     


Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec---CCCcchHHHHHhhhcceeEEEeccCCccccCHHHH
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG---ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA  195 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s---~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L  195 (369)
                      ..++++||++||..++.++.++             ++.|+++   .+.|.++...+++.|+++...        .|++++
T Consensus        73 ~ilv~~gg~~a~~~~~~al~~~-------------gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--------~~l~~l  131 (346)
T TIGR03576        73 KILVFNRTSSAILATILALEPP-------------GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--------DELSEL  131 (346)
T ss_pred             eEEEECCHHHHHHHHHHHhCCC-------------CCEEEECCCCCCCchhHHHHHHHcCCEEecc--------CCHHHH
Confidence            3899999999999998887542             4677764   579999999999999875322        134444


Q ss_pred             HHHHhhcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEE
Q 017569          196 VELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (369)
Q Consensus       196 ~~~i~~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~  272 (369)
                      +.  .+++++|+++ +++++|.+   .|+++|+++|+++      ++|+++|+||+.+...... ..  .....++|.++
T Consensus       132 ~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~------~~~livDEAy~~~~~~~~~-~~--~~~~~~~divv  199 (346)
T TIGR03576       132 KK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSK------EAIVLVDDASGARVRRLYG-QP--PALDLGADLVV  199 (346)
T ss_pred             hh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHc------CCEEEEECCccccccccCC-CC--CHHHcCCcEEE
Confidence            32  2457777764 57888988   7899999999999      9999999999976532111 11  11112478888


Q ss_pred             EcCccCCCCCCCeEEEEEeC
Q 017569          273 VSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       273 ~~~hK~l~~p~g~g~l~~~~  292 (369)
                      .+.+|++.++ ..|+++.++
T Consensus       200 ~s~SKalaG~-r~G~v~~~~  218 (346)
T TIGR03576       200 TSTDKLMDGP-RGGLLAGRK  218 (346)
T ss_pred             eccchhcccc-ceEEEEeCH
Confidence            8999976444 468887643

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.65  E-value=3e-14  Score=137.26  Aligned_cols=269  Identities=11%  Similarity=-0.034  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKT  117 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~  117 (369)
                      ..++....+.. .+++..++|+...|..+ ++.+.+++.++...  ..|....+..++++++.+++++.+|.+ .+.   
T Consensus         7 ~~~~~~~~~~~-~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~--~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~---   80 (357)
T TIGR03539         7 DSLAPYKAKAA-SHPDGIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLERRRGVPGLDP---   80 (357)
T ss_pred             HHHHHHHHHhh-hCCCCeEEccCCCCCCCCCHHHHHHHHHHHhh--CCCCcccCCHHHHHHHHHHHHHhcCCCCCCc---
Confidence            33444444332 23344456666555433 46677777665432  334445678899999999999987765 422   


Q ss_pred             CCeEEeCCchHHHHHHHHHH-HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHH
Q 017569          118 AVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV  196 (369)
Q Consensus       118 ~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~  196 (369)
                      ..+++|+|+++++..++.++ .+             .++.|++++++|..+...++.+|++++.++        |++++.
T Consensus        81 ~~I~it~G~~~~i~~~~~~l~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~--------~~~~l~  139 (357)
T TIGR03539        81 TAVLPVIGTKELVAWLPTLLGLG-------------PGDTVVIPELAYPTYEVGALLAGATPVAAD--------DPTELD  139 (357)
T ss_pred             CeEEEccChHHHHHHHHHHHcCC-------------CCCEEEECCCCcHHHHHHHHhcCCEEeccC--------ChhhcC
Confidence            35889999999998876654 22             147899999999999999999998877663        222222


Q ss_pred             HHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cccccCCC----C
Q 017569          197 ELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPL----V  268 (369)
Q Consensus       197 ~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~----~  268 (369)
                         .+++++|+++.|+||||.+-+   +++|.++|+++      ++++++|++|+.+..  -.+.. ..+-....    -
T Consensus       140 ---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~  208 (357)
T TIGR03539       140 ---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARER------GAVVASDECYLELGW--EGRPVSILDPRVCGGDHTG  208 (357)
T ss_pred             ---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHc------CeEEEEecchhhhcc--CCCCccceecccCCCcccc
Confidence               247889999999999999854   77799999999      999999999975432  11100 00000000    1


Q ss_pred             cEEEEcCccCC-CCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--H
Q 017569          269 KSINVSGHKYG-LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--C  344 (369)
Q Consensus       269 Dsi~~~~hK~l-~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~  344 (369)
                      -.+..+..|.+ ...+.+|+++.. ++.. ..+.. ......        .+.   ..+.+.++...+.. ..++..  +
T Consensus       209 vi~~~S~SK~~~~~G~R~G~~i~~-~~~~-~~~~~-~~~~~~--------~~~---~~~~q~~~~~~l~~~~~~~~~~~~  274 (357)
T TIGR03539       209 LLAVHSLSKRSNLAGYRAGFVAGD-PALV-AELLT-VRKHAG--------LMV---PAPVQAAMVAALGDDGHVAEQKAR  274 (357)
T ss_pred             EEEEeccccccCCCceeEEEEecC-HHHH-HHHHH-HHhhcc--------cCC---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            24445688875 566778998753 2222 12111 000000        011   12334444444432 233333  5


Q ss_pred             hhHHHHHHHHHHHhcC
Q 017569          345 CVDHKKLSSFFVIHSS  360 (369)
Q Consensus       345 ~~~~a~~l~~~L~~~g  360 (369)
                      ..+..+++.+.|.+.|
T Consensus       275 ~~~~~~~~~~~L~~~g  290 (357)
T TIGR03539       275 YAARRAQLKPALEKAG  290 (357)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            6677788888888866

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.64  E-value=4.4e-14  Score=138.44  Aligned_cols=254  Identities=10%  Similarity=-0.024  Sum_probs=159.9

Q ss_pred             ccCCChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ..-..+|.+.+++.++++........+   .+......++.+.+++++|.+.       .++.++|++||..++..+...
T Consensus        57 lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~-------~~~~~sG~~an~~ai~~l~~~  129 (407)
T PRK09064         57 LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEA-------ALVFTSGYVSNDATLSTLAKL  129 (407)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCc-------EEEECcHHHHHHHHHHHHhCC
Confidence            333456788888888776532221111   1234444566667899988643       566677889998887766431


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTG  216 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG  216 (369)
                                 ..+..|+.....|.+....++..|+++..++.      .|+++|++.++    +++++|+++.+++++|
T Consensus       130 -----------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G  192 (407)
T PRK09064        130 -----------IPDCVIFSDELNHASMIEGIRRSRCEKHIFRH------NDVAHLEELLAAADPDRPKLIAFESVYSMDG  192 (407)
T ss_pred             -----------CCCCEEEEeCcchHHHHHHHHHcCCcEEEECC------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCc
Confidence                       01345555666788887888887877655543      26777887775    4678999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccc-cccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      .+.|+++|.++|+++      ++++++|+||+.+.+ +.-.. ...... ....|.++.+..|.++. .| |+++.++ +
T Consensus       193 ~~~~l~~i~~l~~~~------~~~livDEa~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~-~G-G~~~~~~-~  262 (407)
T PRK09064        193 DIAPIAEICDLADKY------NALTYLDEVHAVGMYGPRGGG-IAERDGLMDRIDIIEGTLAKAFGV-MG-GYIAGSA-A  262 (407)
T ss_pred             cccCHHHHHHHHHHc------CCEEEEECCCcccccCCCCCC-hHHhcCCCCCCeEEEEecchhhhc-cC-ceEecCH-H
Confidence            999999999999999      999999999974432 10000 000011 13468887789998854 34 6666532 2


Q ss_pred             Cccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      .. ..+.. ...|.      +  ..+.+....+++..+++.+...+.. + +..++.+++++.|++.|+
T Consensus       263 ~~-~~l~~~~~~~~------~--t~~~~~~~~~aa~~al~~~~~~~~~-~~~~~~~~~~l~~~L~~~g~  321 (407)
T PRK09064        263 LV-DAVRSYAPGFI------F--TTSLPPAIAAAALASIRHLKESNEE-RERHQERAAKLKAALDAAGI  321 (407)
T ss_pred             HH-HHHHHhCcccc------c--cCcCCHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHcCC
Confidence            22 22111 11111      1  1122222345555777776554322 3 788999999999998774

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.64  E-value=3.4e-14  Score=136.98  Aligned_cols=242  Identities=13%  Similarity=0.025  Sum_probs=157.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.+++.. ...|. .++..+|+++    +++.+++++     .++++|+|+++++.+++.++..       
T Consensus        35 ~~~~~~~~a~~~~~~~-~~~Y~-~~~~~~Lr~a----ia~~~~v~~-----~~I~it~G~~~~i~~~~~~l~~-------   96 (360)
T PRK07392         35 GPPESVIAAIQSALSA-LRHYP-DPDYRELRLA----LAQHHQLPP-----EWILPGNGAAELLTWAGRELAQ-------   96 (360)
T ss_pred             CCCHHHHHHHHHHHHH-hhcCC-CcCHHHHHHH----HHHHhCcCh-----hhEEECCCHHHHHHHHHHHhCC-------
Confidence            3456777777766654 22332 2344556555    566667775     3489999999999888776421       


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCcc----ccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYY----VMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~----~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                             ++.|++++|+|..+...++.+|++++.+|+++++.    ..+++++++.. +++++++++.|+||||.+.+.+
T Consensus        97 -------g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~  168 (360)
T PRK07392         97 -------LRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE  168 (360)
T ss_pred             -------CCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH
Confidence                   35899999999999999999999999999975422    35677776654 4678999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CC-CCcEE-EEcCccCCC-CCCCeEEEEEeCCCCccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP-LVKSI-NVSGHKYGL-VYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~-~~Dsi-~~~~hK~l~-~p~g~g~l~~~~~~~~~~  298 (369)
                      +|.++++++      ++ +++|++|..+..+   ........ .. .-..+ ..+.-|.++ ....+|+++..+ +.+ +
T Consensus       169 ~l~~l~~~~------~~-~IiDE~y~~~~~~---~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~-~~~-~  236 (360)
T PRK07392        169 AILPLLEQF------AL-VVVDEAFMDFLPP---DAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHP-DRL-Q  236 (360)
T ss_pred             HHHHHHHHC------CE-EEEECchhhhccC---ccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCH-HHH-H
Confidence            999999988      85 6669999875431   11000011 11 11233 346789886 778999998743 222 2


Q ss_pred             ccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH---HhhHHHHHHHHHHHhcC
Q 017569          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF---CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       299 ~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~---~~~~~a~~l~~~L~~~g  360 (369)
                      .+..   +..    .+    +   ...+.++++...+....+.+.   ...+..+++.+.|++.+
T Consensus       237 ~~~~---~~~----~~----~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~  287 (360)
T PRK07392        237 RWQQ---WRD----PW----P---VNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLP  287 (360)
T ss_pred             HHHh---hCC----CC----C---CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2211   000    01    1   124555555555544444443   45566677888887753

>PRK07049 methionine gamma-lyase; Validated

Probab=99.64  E-value=1.7e-14  Score=141.77  Aligned_cols=227  Identities=14%  Similarity=-0.021  Sum_probs=155.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++.|.+.       .++++||+.|+..++.++.++             ++.|+++.+.|..+..
T Consensus        82 ~Pt~~~Le~~----lA~leg~~~-------~iv~~sG~~Ai~~~l~al~~~-------------Gd~Vv~~~p~Y~~~~~  137 (427)
T PRK07049         82 HPNSEIVEDR----LAVYEGAES-------AALFSSGMSAIATTLLAFVRP-------------GDVILHSQPLYGGTET  137 (427)
T ss_pred             CcCHHHHHHH----HHHHhCCCc-------EEEEccHHHHHHHHHHHHhCC-------------CCEEEEcCCCcccHHH
Confidence            3556667666    888888764       789999999998888877653             4789999999988765


Q ss_pred             HH----hhhcceeEEEeccCCccccCHHHHHHHHh-----hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVD-----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-----~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      .+    ..+|++++.++.     ..|.+++++++.     +++++|++++|+||||.+-|+++|.+++++.++.+..+++
T Consensus       138 ~~~~~l~~~Gi~~v~~~~-----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~  212 (427)
T PRK07049        138 LLAKTFRNFGVGAVGFAD-----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPI  212 (427)
T ss_pred             HHHHHHHhcCcEEEEEeC-----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCE
Confidence            53    456887655651     246777877774     4689999999999999999999999999882111111899


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC--CCeEEEEEeCCCCcccccccccCccCCCCCCccccC
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF  318 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p--~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~  318 (369)
                      +++|++|.....  ..   +.   ..++|.+..|..|++++.  ...|+++. +++.. +.+.......+          
T Consensus       213 vvvDety~~~~~--~~---pl---~~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~-~~l~~~~~~~g----------  272 (427)
T PRK07049        213 IACDNTLLGPVF--QK---PL---EHGADLSVYSLTKYVGGHSDLVAGAVLG-RKALI-RQVRALRSAIG----------  272 (427)
T ss_pred             EEEECCcccccc--CC---cc---ccCCCEEEEcCceeecCCCCcEEEEEEC-CHHHH-HHHHHHHHhcC----------
Confidence            999999865332  11   11   226799999999999853  45677764 33222 22211000111          


Q ss_pred             CcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          319 SKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       319 tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                        .+.....+|..++.+..-..+..+..++++.+++.|++.+.+++-+|
T Consensus       273 --~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~y  319 (427)
T PRK07049        273 --TQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHY  319 (427)
T ss_pred             --CCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence              12346778888887754322211789999999999999988877554

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.63  E-value=6e-14  Score=137.46  Aligned_cols=251  Identities=10%  Similarity=-0.056  Sum_probs=160.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|.+.+++.++++........+   .+......++.+.+++++|.+.       .+++++|++||..++.++...   
T Consensus        59 ~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~-------~~~~~SG~~An~~ai~~l~~~---  128 (406)
T PRK13393         59 GQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEA-------ALLFTSGYVSNWAALSTLGSR---  128 (406)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhhcC---
Confidence            346888888888876533222111   1233455566677999998753       677777788998888865321   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcccCC
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~  219 (369)
                              ..+..|++....|.++..+++..|.+++.++..      |++++++.+.    +++++|++..+++++|.+.
T Consensus       129 --------~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~  194 (406)
T PRK13393        129 --------LPGCVILSDELNHASMIEGIRHSRAEKRIFRHN------DPADLERKLSDLDPHRPKLVAFESVYSMDGDIA  194 (406)
T ss_pred             --------CCCCEEEEccchhHHHHHHHHHcCCeEEEeCCC------CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh
Confidence                    013467777889999988888888877766532      5666776664    3567889999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccc-cccCCCc-cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~-~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      |+++|.++|+++      ++++++|++|+.+.+ +.-..-. .... ...+|.+..+.-|.++.+.  |+++.+ ++.. 
T Consensus       195 ~l~~i~~l~~~~------~~~livDea~~~g~~g~~G~g~~~~~~~-~~~~~i~~~tlsKa~g~~G--G~~~~~-~~~~-  263 (406)
T PRK13393        195 PIAEICDVAEKH------GAMTYLDEVHAVGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVMG--GYITGS-AALC-  263 (406)
T ss_pred             CHHHHHHHHHHc------CCEEEEECCccccccCCCCCchhhhcCC-CCCCeEEEEeCchhhcccC--ceeeCC-HHHH-
Confidence            999999999999      999999999985443 1100000 0111 2346777678899986533  566542 2221 


Q ss_pred             ccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          298 DELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 ~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ..+.. ...|.        ..++.+.....++.++|+.+...+. .. +..++.+++++.|++.|+
T Consensus       264 ~~l~~~~~~~~--------~t~~~~p~~~aa~~aaL~~~~~~~~-~~~~~~~~~~~l~~~L~~~g~  320 (406)
T PRK13393        264 DFIRSFASGFI--------FTTSLPPAVAAGALASVRHLKASSA-ERERHQDRVARLRARLDKAGI  320 (406)
T ss_pred             HHHHHhCcCce--------ecCccCHHHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHcCC
Confidence            11111 01111        1123333334556677776644443 33 778889999999998764

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=4e-14  Score=135.17  Aligned_cols=193  Identities=17%  Similarity=0.076  Sum_probs=134.0

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|....+. ++++.+.+.+.+++..+..+....++..+|++++.+++.+. +.++     ..+++|+|+++++.+++.+
T Consensus        22 i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~-~~~~-----~~i~it~Ga~~~i~~~~~~   95 (335)
T PRK14808         22 TYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTD-FLSK-----NNVSVGNGADEIIYVMMLM   95 (335)
T ss_pred             eEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCC-CCCc-----ceEEEcCCHHHHHHHHHHH
Confidence            344444443 34577888887766543222112346777777766655543 2544     3589999999999888776


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +                 +.|++++|+|..+..+++..|++++.+|++++ +.++...    + ++++++++++|+||||
T Consensus        96 ~-----------------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~----~-~~~~~i~i~nP~NPTG  152 (335)
T PRK14808         96 F-----------------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVN----V-GEGDVVFIPNPNNPTG  152 (335)
T ss_pred             h-----------------CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc-CCCChhH----c-cCCCEEEEeCCCCCCC
Confidence            4                 25889999999999999999999999999864 6665432    2 3568999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      .+-+.+++.+++ ++      ++|+++|++|..+..    ......+. ... =.++.+..|.++ ....+|+++..
T Consensus       153 ~~~s~~~l~~l~-~~------~~~ii~DE~Y~~f~~----~~~~~~~~~~~~-vi~~~S~SK~~~l~GlRvG~~v~~  217 (335)
T PRK14808        153 HVFEREEIERIL-KT------GAFVALDEAYYEFHG----ESYVDLLKKYEN-LAVIRTFSKAFSLAAQRIGYVVSS  217 (335)
T ss_pred             CCcCHHHHHHHH-hc------CCEEEEECchhhhcC----CchHHHHHhCCC-EEEEEechhhccCcccceEEEEeC
Confidence            999999999998 57      899999999986421    10000011 111 123345788877 67889999874

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.62  E-value=2e-14  Score=137.00  Aligned_cols=209  Identities=15%  Similarity=-0.004  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      ++++++++++|.++     ...++|+|+++++..+..+ ..             .+ .|++++++|..+...++..|+++
T Consensus        51 ~lr~~la~~~~~~~-----~~i~~t~G~~~~i~~~~~~-l~-------------~g-~vl~~~p~y~~~~~~~~~~g~~~  110 (330)
T TIGR01140        51 ELRAAAAAYYGLPA-----ASVLPVNGAQEAIYLLPRL-LA-------------PG-RVLVLAPTYSEYARAWRAAGHEV  110 (330)
T ss_pred             HHHHHHHHHhCCCh-----hhEEECCCHHHHHHHHHHH-hC-------------CC-eEEEeCCCcHHHHHHHHHcCCEE
Confidence            44555777888764     2488999999998775433 22             13 68899999999999999999998


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      +.++        |++++++++ +++++|+++.|+||||.+.+   +++|+++|+++      ++++++|++|..+...  
T Consensus       111 ~~~~--------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~------~~~ii~De~y~~~~~~--  173 (330)
T TIGR01140       111 VELP--------DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRAR------GGWLVVDEAFIDFTPD--  173 (330)
T ss_pred             EEeC--------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc------CCEEEEECcccccCCc--
Confidence            8876        688899888 45778999999999999977   66778888899      9999999999865431  


Q ss_pred             CCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHH
Q 017569          256 YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       256 ~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~  333 (369)
                       +. ...+ ....-+.+..+.+|+++ ...++|+++.++. .. ..+..   +..    .+    +   ...+.+.++.+
T Consensus       174 -~~-~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~-~~l~~---~~~----~~----~---~s~~~q~~~~~  235 (330)
T TIGR01140       174 -AS-LAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LL-ARLRE---ALG----PW----T---VNGPARAAGRA  235 (330)
T ss_pred             -cc-hhhHhccCCCEEEEEecchhhcCchhhhhheeCCHH-HH-HHHHh---cCC----CC----C---chHHHHHHHHH
Confidence             11 0111 11233567778999986 3466799987542 22 22211   100    11    1   12344555555


Q ss_pred             HhcHhhH-HHH--HhhHHHHHHHHHHHhcCCC
Q 017569          334 RLGFEVI-PSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       334 ~lg~~G~-~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .+...++ +..  +..++.+++.+.|++.+.+
T Consensus       236 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  267 (330)
T TIGR01140       236 ALADTAWQAATRARLAAERARLAALLARLGGL  267 (330)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5654454 333  7888888999999988754

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.62  E-value=1.2e-14  Score=148.14  Aligned_cols=227  Identities=12%  Similarity=-0.047  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-Hhhhcc
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFEV  176 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~-~~~~G~  176 (369)
                      .+..+..|++||++..      -.+++|+|.+|..++.++..+             ++.|+++.+.|-|+..+ +.+.|+
T Consensus       177 ~eAq~~AA~~fgAd~t------yFlvNGTS~gn~a~i~a~~~~-------------Gd~VLvdRN~HKSv~hgaLiLsGa  237 (720)
T PRK13578        177 KDAQKHAAKVFNADKT------YFVLNGTSASNKVVTNALLTP-------------GDLVLFDRNNHKSNHHGALIQAGA  237 (720)
T ss_pred             HHHHHHHHHHhCCCce------EEEeCChhHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHHcCC
Confidence            4566779999999963      688889999999888887653             57999999999999995 889999


Q ss_pred             eeEEEeccCCc----cccCH-----HHHHHHHhhc----------CcEEEEeeCCCCcccCCCHHHHHHH-HHHhhhccC
Q 017569          177 ELKEVKLEEGY----YVMNP-----VKAVELVDEN----------TICVAAILGSTLTGEFEDVKLLHDL-LTKKNEETG  236 (369)
Q Consensus       177 ~v~~v~~~~~~----~~~d~-----~~L~~~i~~~----------~~~v~~~~~~~~tG~~~~l~~I~~l-~~~~~~~~~  236 (369)
                      .+++++...+.    +.+++     +.|+++|.+.          .+++++++||.. |.+-|+++|.++ ++.+     
T Consensus       238 ~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYd-G~~ydi~~I~~~~~h~~-----  311 (720)
T PRK13578        238 TPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYD-GTIYNARQVVDKIGHLC-----  311 (720)
T ss_pred             eEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCc-ceeecHHHHHHHhhccC-----
Confidence            99998764321    24454     4499888764          378888888655 999999999998 6777     


Q ss_pred             CCceEEeecccccccccccCCC---c-cccccCCCCc----EEEEcCccCCCCCCCeEEEEEeCCCCcc-------cccc
Q 017569          237 WDTPIHVDAASGGFIAPFLYPD---L-EWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTKDDLP-------DELV  301 (369)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~---~-~~~~~~~~~D----si~~~~hK~l~~p~g~g~l~~~~~~~~~-------~~~~  301 (369)
                       + ++|||+|+|++..  +.|.   . +... ..++|    .++-|.||.+.+-..++++.+++.....       ..+.
T Consensus       312 -~-~llvDEAhgah~~--F~p~~~~~p~~al-~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~  386 (720)
T PRK13578        312 -D-YILFDSAWVGYEQ--FIPMMADCSPLLL-ELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLN  386 (720)
T ss_pred             -C-cEEEeCcchhhhc--cCcccccCChhhh-hcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHH
Confidence             7 9999999998764  3332   1 1112 34888    9999999999888888888886642110       0110


Q ss_pred             cccCccCCCCCCccccCCcchhHHHHHHHHHHHh-cHhhHHHH-HhhHHHHHHHHHH-HhcCCC
Q 017569          302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-GFEVIPSF-CCVDHKKLSSFFV-IHSSYF  362 (369)
Q Consensus       302 ~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l-g~~G~~~~-~~~~~a~~l~~~L-~~~g~~  362 (369)
                      .......        .-|.+....+++-.+-+.+ +..|...+ ++++.+..+|++| +....|
T Consensus       387 ~al~m~q--------STSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~  442 (720)
T PRK13578        387 NAFMLHA--------STSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLI  442 (720)
T ss_pred             HHHHHHc--------CCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            0001111        1244455566666666666 44677777 9999999999999 665554

>PLN02483 serine palmitoyltransferase

Probab=99.61  E-value=8.8e-14  Score=139.02  Aligned_cols=224  Identities=12%  Similarity=-0.000  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh
Q 017569           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY  173 (369)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~  173 (369)
                      .....++++.+++++|.+.       .++.++|..++..++.++..+             ++.|+++++.|.++...++.
T Consensus       145 ~~~~~ele~~lA~~~g~~~-------ai~~~~G~~an~~~i~al~~~-------------Gd~Vi~d~~~h~s~~~~~~~  204 (489)
T PLN02483        145 TKLHRELEELVARFVGKPA-------AIVFGMGYATNSTIIPALIGK-------------GGLIISDSLNHNSIVNGARG  204 (489)
T ss_pred             cHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHhCCC-------------CCEEEEcchhhHHHHHHHHH
Confidence            3444455566999999764       455556677787666665432             47899999999999999999


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHh-------hcC-----c-EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVD-------ENT-----I-CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~-------~~~-----~-~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      .|++++.++.+      |+++|++.++       +++     + +|++....+++|.+.++++|.++|+++      +++
T Consensus       205 ~Ga~v~~~~~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~------~~~  272 (489)
T PLN02483        205 SGATIRVFQHN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKY------KAY  272 (489)
T ss_pred             cCCeEEEEeCC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHc------CCE
Confidence            99999999854      3455555443       222     4 444444558899999999999999999      999


Q ss_pred             EEeecccccccccccCCCc--cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc-cCccCCCCCCcccc
Q 017569          241 IHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLN  317 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~  317 (369)
                      +++|+||+.+.........  ...+....+|.+..+.+|.+++ .| |+++.+ ++.+ ..+... ..+.      +  .
T Consensus       273 livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G-G~i~~~-~~li-~~l~~~~~~~~------~--~  340 (489)
T PLN02483        273 VYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG-GYIAGS-KELI-QYLKRTCPAHL------Y--A  340 (489)
T ss_pred             EEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-Cc-eEEEcC-HHHH-HHHHHhCcccc------c--c
Confidence            9999999754321000000  0122223678888999999854 44 777653 3232 222111 1111      0  0


Q ss_pred             CCcchhHHHHHHHHHHHh-cHh----hHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          318 FSKGSSQIIAQYYQFIRL-GFE----VIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       318 ~tr~~~~~l~~~~~l~~l-g~~----G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ++.+......+.++|+.+ +.+    +.+.+ +..++.++|++.|+++|+
T Consensus       341 ~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~  390 (489)
T PLN02483        341 TSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGF  390 (489)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCC
Confidence            111122222333455544 222    22334 888999999999999875

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.61  E-value=1.4e-13  Score=134.76  Aligned_cols=203  Identities=12%  Similarity=0.040  Sum_probs=139.8

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhccC-----CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~n-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      +.++|+...+.. +++.+.+++.+++...     ...|...++..++++++++++.+. ++++     ..+++|+|++++
T Consensus        34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~-----d~I~it~Ga~~a  107 (402)
T TIGR03542        34 DIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-RIDP-----EEIFISDGAKCD  107 (402)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-CCCH-----HHEEECCCcHHH
Confidence            345666666553 3566778777766532     233445568888998877765332 4554     348999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcc-----------eeEEEeccC-CccccCHHHHHH
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV-----------ELKEVKLEE-GYYVMNPVKAVE  197 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~-----------~v~~v~~~~-~~~~~d~~~L~~  197 (369)
                      +... ..+..             .+++|+++.|+|..+...++..|+           .++.+|+++ +++.+|+++   
T Consensus       108 l~~l-~~l~~-------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---  170 (402)
T TIGR03542       108 VFRL-QSLFG-------------SDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE---  170 (402)
T ss_pred             HHHH-HHhcC-------------CCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc---
Confidence            9764 33322             146899999999999999999999           888899864 335555422   


Q ss_pred             HHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCC---cE
Q 017569          198 LVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLV---KS  270 (369)
Q Consensus       198 ~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~---Ds  270 (369)
                        .+++++|+++.|+||||.+-+   +++|+++|+++      ++++++|++|..+..   .+.....+. ....   -.
T Consensus       171 --~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~y~~~~~---~~~~~~~~~~~~~~~~~vi  239 (402)
T TIGR03542       171 --EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH------GSLILFDAAYSAFIS---DPSLPHSIFEIPGAKECAI  239 (402)
T ss_pred             --cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc------CeEEEEEchhhhhcc---CCCCCcchhhCCCCcccEE
Confidence              156889999999999999965   88899999999      999999999987543   111111111 1111   12


Q ss_pred             EEEcCccCC-CCCCCeEEEEEeC
Q 017569          271 INVSGHKYG-LVYAGVGWVVWRT  292 (369)
Q Consensus       271 i~~~~hK~l-~~p~g~g~l~~~~  292 (369)
                      .+.+.-|.+ ....+.|++++.+
T Consensus       240 ~~~SfSK~~g~pGlRiG~~i~~~  262 (402)
T TIGR03542       240 EFRSFSKTAGFTGVRLGWTVVPK  262 (402)
T ss_pred             EEecCccccCCCCcceEEEEecH
Confidence            245678987 4678899998743

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02822 serine palmitoyltransferase

Probab=99.61  E-value=5.5e-14  Score=140.19  Aligned_cols=268  Identities=13%  Similarity=-0.001  Sum_probs=164.7

Q ss_pred             CCCCcccccccc-C-CChHHHHHHHHHHhccCCCCCCC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           54 GNPRLNLASFVT-T-WMEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        54 ~~p~~~l~~~~~-~-~~~~~v~~~~~~~~~~n~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      ++..+||+++.. + ..++.+.+++.++++.....+..   +-+......++++.+++++|.+.      ..++++|++ 
T Consensus       108 G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~------~i~~s~G~~-  180 (481)
T PLN02822        108 GKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPD------SILYSYGLS-  180 (481)
T ss_pred             CceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCC------EEEECCHHH-
Confidence            444456654422 2 24678889888888764333222   12344555566666999998763      266666655 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHh--hcC-c
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD--ENT-I  204 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--~~~-~  204 (369)
                      ++..++.++.++             ++.|++....|+++..++.+.|.+++.++.++ +.+..+++++++...  +++ +
T Consensus       181 a~~sai~a~~~~-------------gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~  247 (481)
T PLN02822        181 TIFSVIPAFCKK-------------GDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRR  247 (481)
T ss_pred             HHHHHHHHhCCC-------------CCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcE
Confidence            676776665432             46888999999999999999999998888753 224444444443321  334 6


Q ss_pred             EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCC--ccccccCCCCcEEEEcCccCCCCC
Q 017569          205 CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD--LEWDFRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~--~~~~~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      +|++....+++|.+.|+++|.++|++|      ++++++|++|+.+.+.-....  ..+.+....+|.++.+..|.++ .
T Consensus       248 ~Ivve~i~~~~G~i~~L~~i~~l~~k~------~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~  320 (481)
T PLN02822        248 YIVVEAIYQNSGQIAPLDEIVRLKEKY------RFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-T  320 (481)
T ss_pred             EEEEecCCCCCCCccCHHHHHHHHHHc------CCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-h
Confidence            888889999999999999999999999      999999999985543100000  0111212357899999999985 3


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhc
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~  359 (369)
                      .| |+++.+ ++.. +.+..    ..   ..++..++.+.....+.-.+|+.+.. .-+.+ +..++.++|++.|++.
T Consensus       321 ~G-G~i~g~-~~ii-~~~~~----~~---~~~~fsa~lPp~~~~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~~  387 (481)
T PLN02822        321 EG-GFCTGS-ARVV-DHQRL----SS---SGYVFSASLPPYLASAAITAIDVLED-NPSVLAKLKENIALLHKGLSDI  387 (481)
T ss_pred             CC-eEEEcC-HHHH-HHHHh----cC---CceeeccccCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhc
Confidence            33 666653 2222 22111    01   11121122222222223245554432 11222 8999999999999986

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.61  E-value=9e-15  Score=130.87  Aligned_cols=248  Identities=16%  Similarity=0.115  Sum_probs=164.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      -|..++++++.++.-... -|+..|-+.+||++    .++++|-+.       +.|+++||++|++++++.+..      
T Consensus        33 ~PTdeMr~am~eA~vgDd-VyGeD~tt~rLE~~----vA~l~GKEA-------gLFv~SGTmgNllaIm~Hc~~------   94 (384)
T KOG1368|consen   33 VPTDEMRRAMAEASVGDD-VYGEDPTTNRLEQR----VAELFGKEA-------GLFVPSGTMGNLLAIMVHCHQ------   94 (384)
T ss_pred             CChHHHHHHHhhcccCcc-cccCCccHHHHHHH----HHHHhCccc-------eeeecccccccHHHHHHHhcC------
Confidence            344667777766643222 24566788999988    888999986       899999999999999998763      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHH---HhhhcceeEEEeccCCccccCHHHHHHHHhh--------cCcEEEEeeCCCCc
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------NTICVAAILGSTLT  215 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--------~~~~v~~~~~~~~t  215 (369)
                            .+-+||+.+..|.-..+.   ..+.|+.++.|...+| +.||++++|++|..        -|++|.+..-.+.+
T Consensus        95 ------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~d-gtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~  167 (384)
T KOG1368|consen   95 ------RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNEND-GTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNC  167 (384)
T ss_pred             ------CCceEEeccchheeehhccChhhhccceeEeeeeCCC-CeeeHHHHHHhhcCCCCCccCCCceEEEeecccccc
Confidence                  135899999999654433   3455777888876665 89999999999973        26888888888888


Q ss_pred             c-cCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          216 G-EFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       216 G-~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      | .+-|   +++|.++|+++      ++.+|.|||--+-..  ..-..+..--...+||+++...|-+++|.|+ ++ +.
T Consensus       168 Gg~vlPle~~~~v~~lak~~------glkLH~DGARi~NAa--vasgV~vk~i~~~fDSVsiCLSKglgAPVGS-Vi-VG  237 (384)
T KOG1368|consen  168 GGKVLPLEELDRVKALAKRH------GLKLHMDGARIFNAA--VASGVPVKKICSAFDSVSICLSKGLGAPVGS-VI-VG  237 (384)
T ss_pred             CceEeeHHHHHHHHHHHhcc------CCeeecchhhhhhHH--HHcCCCHHHHHHhhhhhhhhhhccCCCCccc-EE-Ec
Confidence            8 6656   45677889999      999999998322111  0011111111447899999999999999985 44 45


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      +++++.++-.....+ ++        |-|... .++. ++|-.+ .+.+..+ +.++.|+.+++.++..+-
T Consensus       238 ~k~FI~kA~~~RKal-GG--------GmRQsG-vLaa-aaLval-~~~~~~L~~dHk~A~~lAe~~~~~~~  296 (384)
T KOG1368|consen  238 SKDFIDKARHFRKAL-GG--------GMRQSG-VLAA-AALVAL-DENVPLLRADHKRAKELAEYINTPEE  296 (384)
T ss_pred             cHHHHHHHHHHHHHh-cC--------chhHHH-HHHH-HHHHHh-hcchHHHHHHHHHHHHHHHHhccccc
Confidence            554443321111111 22        222221 2222 333333 2345556 788888888888887663

>PRK08637 hypothetical protein; Provisional

Probab=99.60  E-value=3.4e-14  Score=138.38  Aligned_cols=200  Identities=10%  Similarity=0.013  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +.+.+++.+........|....|..++++++.+++.+..+ .+++  +...+++|+|+++++.+++.++.++        
T Consensus        23 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~--~~~~I~it~G~~~al~~~~~~l~~~--------   92 (388)
T PRK08637         23 SSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGK--KMSLPIVTNALTHGLSLVADLFVDQ--------   92 (388)
T ss_pred             HHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCcccccc--ccceeeEccchHHHHHHHHHHhcCC--------
Confidence            3344444433223455666667888999888887776542 2211  1124789999999999888877542        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHH-hhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcccCC---C
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFA-RYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFE---D  220 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~-~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~---~  220 (369)
                           ++.|+++.|+|+.+...+ ...|++++.+|+..+++.+|+++++++++    +.++++++++|+||||.+-   .
T Consensus        93 -----gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~  167 (388)
T PRK08637         93 -----GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKE  167 (388)
T ss_pred             -----CCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHH
Confidence                 478999999999998875 46799999999842236789999999887    4456677888999999884   4


Q ss_pred             HHHHHHHHHH-----hhhccCCCceEEeecccccccccccCCCc-cc--cc-c-CCCCcEEEE-cCcc-CCCCCCCeEEE
Q 017569          221 VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPDL-EW--DF-R-LPLVKSINV-SGHK-YGLVYAGVGWV  288 (369)
Q Consensus       221 l~~I~~l~~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~--~~-~-~~~~Dsi~~-~~hK-~l~~p~g~g~l  288 (369)
                      +++|+++|++     +      ++++++|.+|..+..  -.... +.  .+ . ..++..+.+ ++.| ++.....+|++
T Consensus       168 ~~~l~~~~~~~~~~~~------~~~iI~De~Y~~l~~--~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~  239 (388)
T PRK08637        168 ATAIVEAIKELADAGT------KVVAVVDDAYFGLFY--EDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFI  239 (388)
T ss_pred             HHHHHHHHHHHHhcCC------cEEEEecccchhccc--CCccchhhHHHhhcccccceEEEeccccccCCCcccceEEE
Confidence            6777777765     6      999999999987543  11111 10  11 1 113323332 5555 67788999999


Q ss_pred             EEeC
Q 017569          289 VWRT  292 (369)
Q Consensus       289 ~~~~  292 (369)
                      ++.+
T Consensus       240 ~~~~  243 (388)
T PRK08637        240 TFGT  243 (388)
T ss_pred             EEcc
Confidence            8753

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.60  E-value=8.9e-14  Score=135.49  Aligned_cols=245  Identities=12%  Similarity=0.019  Sum_probs=152.2

Q ss_pred             CChHHHHHHHHHHhccCCCC-------CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD-------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~-------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ..+|.+.+++.+++++...+       |.......+||    +.+++++|.+.       .++.++|+.++..++.++.+
T Consensus        12 ~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-------al~~~sG~~a~~~~i~~l~~   80 (392)
T PLN03227         12 SSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-------AILYSDGASTTSSTVAAFAK   80 (392)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-------EEEecCcHHHHHHHHHHhCC
Confidence            34577788777777652222       22223334444    45999999874       57777778888777777543


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh-----------hcCcEEEE
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-----------ENTICVAA  208 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-----------~~~~~v~~  208 (369)
                      +             ++.|++++..|.++...+.+.++++++++...   .-|++.+.+.+.           +++++|++
T Consensus        81 ~-------------GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d---~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~  144 (392)
T PLN03227         81 R-------------GDLLVVDRGVNEALLVGVSLSRANVRWFRHND---MKDLRRVLEQVRAQDVALKRKPTDQRRFLVV  144 (392)
T ss_pred             C-------------CCEEEEeccccHHHHHHHHHcCCeEEEeCCCC---HHHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence            2             57999999999999988888788777776542   113444444443           25788999


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccc----ccCCCcccccc-CCCCcEEEEcCccCCCCCC
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP----FLYPDLEWDFR-LPLVKSINVSGHKYGLVYA  283 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~----~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~  283 (369)
                      ..+.+++|.+.|+++|.++|+++      ++++++|++++.+...    +...  .+.+. ..++|.++.+.+|.++ |.
T Consensus       145 E~v~~~~G~i~~l~~i~~l~~~~------g~~livDe~~~~g~~g~~G~g~~~--~~g~~p~~~~Div~~slsk~~g-~~  215 (392)
T PLN03227        145 EGLYKNTGTLAPLKELVALKEEF------HYRLILDESFSFGTLGKSGRGSLE--HAGLKPMVHAEIVTFSLENAFG-SV  215 (392)
T ss_pred             cCCcCCCCcccCHHHHHHHHHHc------CCEEEEECcccccccCCCCCcHHH--HcCCCCCCCceEEEeechhhhh-cc
Confidence            99999999999999999999999      9999999999743321    0000  11122 3478999999999864 44


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh-c-HhhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-G-FEVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l-g-~~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                      | |+++.++ +.. ..+..   + +.   ..+..++-+   ++.+|+++..+ . .+.-..+ +..++.++|+++|++.+
T Consensus       216 g-g~v~~~~-~~~-~~~~~---~-~~---~~~~~~~~~---p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~  282 (392)
T PLN03227        216 G-GMTVGSE-EVV-DHQRL---S-GS---GYCFSASAP---PFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSS  282 (392)
T ss_pred             C-cEEecCH-HHH-HHHHH---h-Cc---CccccCCCC---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Confidence            3 5555432 221 11110   0 11   111112211   22333333222 1 1122223 88999999999998754

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.60  E-value=1.9e-13  Score=134.37  Aligned_cols=213  Identities=16%  Similarity=0.120  Sum_probs=142.9

Q ss_pred             CccccccccCCC---hHHHHHHHHHHhccC-----CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           57 RLNLASFVTTWM---EPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        57 ~~~l~~~~~~~~---~~~v~~~~~~~~~~n-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .++|+.+.|...   ...+.+++.+.++..     ...|....+..+|++++.+|+.+.+|.+.+.   ..+++|+|+++
T Consensus        32 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~---~~I~it~Ga~~  108 (416)
T PRK09440         32 AIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISP---QNIALTNGSQS  108 (416)
T ss_pred             ceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEEccChHH
Confidence            356666655422   235677777766542     1345555678899999999999888876432   35899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEe-cCCCcchHHHHHhhhc----ceeEEEeccCC--ccccCHHHHHHHHhh
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT-GANVQVCWEKFARYFE----VELKEVKLEEG--YYVMNPVKAVELVDE  201 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G----~~v~~v~~~~~--~~~~d~~~L~~~i~~  201 (369)
                      ++.+++.++.+.        +.+..++.|++ ..|+|+.+...+...|    ..+..++++.+  ++.+|+++|+  +.+
T Consensus       109 al~~~~~~l~~~--------~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~  178 (416)
T PRK09440        109 AFFYLFNLFAGR--------RADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE  178 (416)
T ss_pred             HHHHHHHHHhcc--------ccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC
Confidence            998888877541        11112468988 5999998887665433    33344455432  3689999997  466


Q ss_pred             cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccC
Q 017569          202 NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY  278 (369)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~  278 (369)
                      ++++++++.|+||||.+.+   +++|+++|+++      ++++++|.+|+............... ..++ .+..+..|.
T Consensus       179 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~De~Y~~~~~~~~~~~~~~~~-~~~v-I~~~SfSK~  250 (416)
T PRK09440        179 DTGAICVSRPTNPTGNVLTDEELEKLDALARQH------NIPLLIDNAYGPPFPGIIFSEATPLW-NPNI-ILCMSLSKL  250 (416)
T ss_pred             CceEEEEecCCCCCCccCCHHHHHHHHHHHHHc------CCcEEEeCCccccCCCcchhhcCccc-cCCe-EEEeccccc
Confidence            7889999999999999955   77888999999      99999999997422100000000000 1111 233468898


Q ss_pred             CCCCCCeEEEEE
Q 017569          279 GLVYAGVGWVVW  290 (369)
Q Consensus       279 l~~p~g~g~l~~  290 (369)
                      +.....+|+++.
T Consensus       251 ~~pGlRiG~~i~  262 (416)
T PRK09440        251 GLPGVRCGIVIA  262 (416)
T ss_pred             CCCcceEEEEeC
Confidence            878889999876

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.59  E-value=7.6e-14  Score=134.77  Aligned_cols=168  Identities=19%  Similarity=0.103  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      ++++.+++++|+++     ..+++|+|+++++.+++.++..+        |    +++|++++++|..+...++..|+++
T Consensus        63 ~lr~~ia~~~~~~~-----~~I~~t~G~~~~l~~~~~~~~~~--------g----~~~vlv~~p~y~~~~~~~~~~g~~~  125 (364)
T PRK04781         63 GLRSALAALYGCAP-----EQLLIGRGSDEAIDLLVRALCVP--------G----RDAVLVTPPVFGMYAVCARLQNAPL  125 (364)
T ss_pred             HHHHHHHHHhCcCh-----HHEEEeCCHHHHHHHHHHHhcCC--------C----CCeEEEcCCChHHHHHHHHHcCCEE
Confidence            34444777788875     34899999999999888877442        1    2579999999988888889999999


Q ss_pred             EEEecc--CCccccCHHHHHHHH-hhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          179 KEVKLE--EGYYVMNPVKAVELV-DENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       179 ~~v~~~--~~~~~~d~~~L~~~i-~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      +.+|++  ++++.+|++++++++ .+++++|++++|+||||.+.+.+++.++++...+    ++++++|++|+.+..   
T Consensus       126 ~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~----~~~iI~Deay~~f~~---  198 (364)
T PRK04781        126 VEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQG----KALVVVDEAYGEFSD---  198 (364)
T ss_pred             EEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCC----CcEEEEeCcchhhcC---
Confidence            999984  234678999986554 6788999999999999999999999998886411    789999999987542   


Q ss_pred             CCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          256 YPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       256 ~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      .+....... ..++ .+.-+.-|.++ .....|+++..
T Consensus       199 ~~~~~~~~~~~~~v-i~~~SfSK~~gl~GlRvGy~v~~  235 (364)
T PRK04781        199 VPSAVGLLARYDNL-AVLRTLSKAHALAAARIGSLIAN  235 (364)
T ss_pred             CcchHHHHhhCCCE-EEEecChhhcccccceeeeeeCC
Confidence            111000011 1122 33455789775 67899999863

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.58  E-value=4.4e-13  Score=139.29  Aligned_cols=302  Identities=12%  Similarity=-0.036  Sum_probs=187.7

Q ss_pred             ccccccc-cchhHhhhCC-CCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccc-cCCChHHHHHHHHH---Hhcc-CC
Q 017569           12 EILSSTF-ASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFV-TTWMEPECDKLVMA---SINK-NY   84 (369)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~-~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~-~~~~~~~v~~~~~~---~~~~-n~   84 (369)
                      ++|+++| ...|..-++. .+++|+ +.++.++++.++++-..|...+.-++.+. .+..|+.+.+-+.+   .+.. .+
T Consensus        35 ~s~d~l~~~~iP~~ir~~~~l~lp~-~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTP  113 (954)
T PRK12566         35 ASRAELIEQTVPPAIRLNRPLDLPA-ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTP  113 (954)
T ss_pred             cCHHHHhhccCCHHHhcCCCCCCCC-CCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCchhhhcCCC
Confidence            4566777 5555322333 245665 58999999999988766544332133332 23344555344332   2322 35


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch---HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC
Q 017569           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS---EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA  161 (369)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt---~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~  161 (369)
                      ++++.++|.-+...+.+.++++|.|++..     +...--++|   ||+.++.+..+.             ++.+|++++
T Consensus       114 YQpEisQG~Lqal~e~Qtmi~~LtGm~va-----NASl~D~atA~aEA~~ma~~~~~~-------------k~~~~~v~~  175 (954)
T PRK12566        114 YQPEIAQGRLEALLNFQQMTIDLTGLDLA-----NASLLDEATAAAEAMALAKRVAKS-------------KSNRFFVDE  175 (954)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHhCchhh-----hhhhccchhHHHHHHHHHHHHhhc-------------CCCEEEECC
Confidence            55566778777778899999999999962     233444544   444443322111             135899999


Q ss_pred             CCcchHHHHHh----hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCC
Q 017569          162 NVQVCWEKFAR----YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (369)
Q Consensus       162 ~~h~s~~~~~~----~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~  237 (369)
                      ..|+.+...++    .+|++++.            +++++.+++++.+|++.+|++. |.+.|+++|.+++|+.      
T Consensus       176 ~~hP~~~~v~~t~~~~~g~~i~~------------~~~~~~~~~~~~~v~vq~P~~~-G~i~d~~~i~~~~h~~------  236 (954)
T PRK12566        176 HCHPQTLSVLRTRAEGFGFELVV------------DAVDNLAAHAVFGALLQYPDTH-GEIRDLRPLIDQLHGQ------  236 (954)
T ss_pred             CCCHHHHHHHHHhhhcCCcEEEE------------cchhhcCCCCEEEEEEECCCCc-eEEccHHHHHHHHHHc------
Confidence            99998776554    34555543            2344456667889999999766 9999999999999999      


Q ss_pred             CceEEeecccccccccccCCCccccccCCCCcEEEEcCccC----CCCCCCeEEEEEeCCCCccccccc-----ccCccC
Q 017569          238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY----GLVYAGVGWVVWRTKDDLPDELVF-----HINYLG  308 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~----l~~p~g~g~l~~~~~~~~~~~~~~-----~~~y~~  308 (369)
                      +..++ +++--. .+..+.+  +-   ..|+|.++.+++-+    +++++..|++.+|++ + .+.+..     ..+-.+
T Consensus       237 gal~~-~~~d~l-aL~ll~~--Pg---e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~-~-~R~~PGRivG~s~D~~G  307 (954)
T PRK12566        237 QALAC-VAADLL-SLLVLTP--PG---ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDD-Y-KRAMPGRIIGVSRDARG  307 (954)
T ss_pred             CCEEE-EEeCHH-HHhCCCC--hh---hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHH-H-HhhCCCCccceeecCCC
Confidence            88755 333111 1111222  11   34899997666655    345566789998764 2 122111     011111


Q ss_pred             CCCCCcc---------------ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          309 SDQPTFT---------------LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       309 ~~~~~~~---------------l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ......+               --||-.+..++..-+++.++|.+|++++  +++.+|+||++.|.+.|
T Consensus       308 ~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g  376 (954)
T PRK12566        308 NTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKG  376 (954)
T ss_pred             CeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1000001               1278877777777788889999999998  89999999999999988

>PRK08354 putative aminotransferase; Provisional

Probab=99.58  E-value=7.9e-14  Score=131.78  Aligned_cols=171  Identities=20%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      ++.+.+++.+++.... .   +|....    +++++++.+|.+        +++|+|+++++.+.+..+. +        
T Consensus        22 p~~~~~a~~~~~~~~~-~---yp~~~~----l~~~ia~~~~~~--------I~vt~G~~~al~~~~~~~~-~--------   76 (311)
T PRK08354         22 PEWLDEMFERAKEISG-R---YTYYEW----LEEEFSKLFGEP--------IVITAGITEALYLIGILAL-R--------   76 (311)
T ss_pred             CHHHHHHHHHHHHHhh-c---CCChHH----HHHHHHHHHCCC--------EEECCCHHHHHHHHHHhhC-C--------
Confidence            4667777777664322 2   233333    455688888742        8999999999976654332 1        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLH  225 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~  225 (369)
                           ++.|+++.|+|+.+...++..|++++.++       +|++.|+++++ ++++++++.|+||||.+.+   +++|.
T Consensus        77 -----gd~vlv~~P~y~~~~~~~~~~g~~~~~~~-------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~  143 (311)
T PRK08354         77 -----DRKVIIPRHTYGEYERVARFFAARIIKGP-------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLL  143 (311)
T ss_pred             -----CCeEEEeCCCcHHHHHHHHHcCCEEeecC-------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHH
Confidence                 47899999999999999999999886543       46888988876 5678999999999999865   66777


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEE
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~  290 (369)
                      ++|+++      ++|+++|++|+.+...   .. ...  ... -.++-+.-|.++ .....|+++.
T Consensus       144 ~~a~~~------~~~li~De~y~~f~~~---~~-~~~--~~~-vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        144 DAVEDR------NALLILDEAFIDFVKK---PE-SPE--GEN-IIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHhhhc------CcEEEEeCcchhcccc---cc-ccC--CCc-EEEEeccHhhcCCccceeeeeee
Confidence            788888      9999999999875431   11 111  111 123345678876 6688999886

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.57  E-value=4.1e-13  Score=131.63  Aligned_cols=256  Identities=13%  Similarity=-0.069  Sum_probs=157.6

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.++++........ .+..++..++.+.+++++|.+.     ....+++||++|+..++++++...      
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~-----~~v~~~~sgsea~~~al~~~~~~~------  120 (413)
T cd00610          53 NHPEVVEALKEQLAKLTHFSLG-FFYNEPAVELAELLLALTPEGL-----DKVFFVNSGTEAVEAALKLARAYT------  120 (413)
T ss_pred             CCHHHHHHHHHHHHhCcCccCc-ccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHc------
Confidence            4577888888877543222111 1345667778888999998543     248999999999999999887531      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHhhhc------------ceeEEEeccCC-----ccccCHHHHHHHHhh---cCcEE
Q 017569          148 QGKPYDKPNIVTGANVQVC-WEKFARYFE------------VELKEVKLEEG-----YYVMNPVKAVELVDE---NTICV  206 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s-~~~~~~~~G------------~~v~~v~~~~~-----~~~~d~~~L~~~i~~---~~~~v  206 (369)
                           .+++|++.++.+.. ....+...+            .+++.+|.++.     ++..|+++|++.+++   ++.+|
T Consensus       121 -----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v  195 (413)
T cd00610         121 -----GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAV  195 (413)
T ss_pred             -----CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEE
Confidence                 13567776655443 333333222            23566666521     245689999999976   45677


Q ss_pred             EEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC
Q 017569          207 AAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       207 ~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      +++..++++|.+.|    +++|.++|+++      ++++++|++|+++..  .......+..-...|.++++  |+++++
T Consensus       196 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~g~g~--~g~~~~~~~~~~~~d~~t~s--K~l~~g  265 (413)
T cd00610         196 IVEPIQGEGGVIVPPPGYLKALRELCRKH------GILLIADEVQTGFGR--TGKMFAFEHFGVEPDIVTLG--KGLGGG  265 (413)
T ss_pred             EEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CcchhhHhhcCCCCCeEEEc--ccccCc
Confidence            77777777798776    99999999999      999999999986421  11100111111134666654  998888


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      ++.|+++.++ +.. ..+. ...+.    ...+  .+.+.....++.++|+.+..+.+.+ +..++.++++++|++..
T Consensus       266 ~~~g~~~~~~-~~~-~~~~-~~~~~----~~~t--~~~~~~~~~a~~a~l~~l~~~~~~~-~~~~~~~~l~~~l~~~~  333 (413)
T cd00610         266 LPLGAVLGRE-EIM-DAFP-AGPGL----HGGT--FGGNPLACAAALAVLEVLEEEGLLE-NAAELGEYLRERLRELA  333 (413)
T ss_pred             cccEEEEEcH-HHH-Hhhc-cCCCC----CCCC--CCcCHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH
Confidence            8899988743 222 2210 00000    0011  1222223455666777775533322 77788888888887753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.57  E-value=1.4e-13  Score=131.69  Aligned_cols=221  Identities=17%  Similarity=0.071  Sum_probs=160.9

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch---
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---  166 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s---  166 (369)
                      .|....||+.    ++.+-|.+.       ++.+++|+.|+..++.++...             ++.|+.+...|..   
T Consensus        62 nPT~~~lE~~----~a~LEg~~~-------~~afsSGmaAI~~~~l~ll~~-------------GD~vl~~~~~YG~t~~  117 (396)
T COG0626          62 NPTRDALEEA----LAELEGGED-------AFAFSSGMAAISTALLALLKA-------------GDHVLLPDDLYGGTYR  117 (396)
T ss_pred             CccHHHHHHH----HHHhhCCCc-------EEEecCcHHHHHHHHHHhcCC-------------CCEEEecCCccchHHH
Confidence            4566677766    788887775       889999999999888887653             4788888776554   


Q ss_pred             -HHHHHhhhcceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          167 -WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       167 -~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                       +.+..+.+|+++.+++..      |.+++++++. ++|++|++-+|+||+..+.||.+|+++|+++      ++.++||
T Consensus       118 ~~~~~l~~~gi~~~~~d~~------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~------g~~vvVD  185 (396)
T COG0626         118 LFEKILQKFGVEVTFVDPG------DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAY------GALVVVD  185 (396)
T ss_pred             HHHHHHHhcCeEEEEECCC------ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhc------CCEEEEE
Confidence             334445568888777643      3466777777 5999999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCccccccccc-CccCCCCCCccccCCcc
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~  321 (369)
                      +.++.+++  .+|   .   ..|+|.+.-|.-|++++.-.+  |+++.++++ +.+.+.... .+.+.            
T Consensus       186 NTfatP~~--q~P---L---~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~-~~~~~~~~~~~~~G~------------  244 (396)
T COG0626         186 NTFATPVL--QRP---L---ELGADIVVHSATKYLGGHSDVLGGVVLTPNEE-LYELLFFAQRANTGA------------  244 (396)
T ss_pred             CCcccccc--cCh---h---hcCCCEEEEeccccccCCcceeeeEEecChHH-HHHHHHHHHHhhcCC------------
Confidence            99886544  222   2   237999999999999887654  544444432 212210000 01111            


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ...+..+|..++.+..-+++-.++.++|..++++|++.+.+++-+|
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y  290 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYY  290 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence            2236777888888876666644999999999999999999887665

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.56  E-value=5.7e-14  Score=143.07  Aligned_cols=224  Identities=13%  Similarity=0.034  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      .+..+..|++||++..      -.+++|+|.+|..++.++..+             ++.|+++.+.|-|+..++.+.|+.
T Consensus       198 ~eAe~~AA~~fgAd~t------yfvvNGTS~~n~av~~a~~~~-------------Gd~VLvdRN~HKSv~haLilsga~  258 (714)
T PRK15400        198 KEAEEYIARVFNADRS------YMVTNGTSTANKIVGMYSAPA-------------GSTVLIDRNCHKSLTHLMMMSDVT  258 (714)
T ss_pred             HHHHHHHHHHhCCCcE------EEEeCchHHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCCe
Confidence            4566779999999963      578889999998888887553             579999999999999999999999


Q ss_pred             eEEEeccCCc----cccC-----HHHHHHHHhhc-----CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEe
Q 017569          178 LKEVKLEEGY----YVMN-----PVKAVELVDEN-----TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       178 v~~v~~~~~~----~~~d-----~~~L~~~i~~~-----~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                      +++++...+.    +.++     .+.++++|.+.     |+.+++++| |..|.+-++++|.++|+.+      +  +|+
T Consensus       259 PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~------~--ilv  329 (714)
T PRK15400        259 PIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IHF  329 (714)
T ss_pred             EEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCC------C--EEE
Confidence            9998765321    2345     89999999763     337888888 5559999999999999877      7  799


Q ss_pred             ecccccccccccCCCcc--ccccCCCC---c--EEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccc
Q 017569          244 DAASGGFIAPFLYPDLE--WDFRLPLV---K--SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL  316 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~--~~~~~~~~---D--si~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l  316 (369)
                      |+|+|++..  +.|..+  ..+. .++   |  .++-|.||.+.+-..++++.++.. .-...+........+       
T Consensus       330 DEAwgah~~--F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~m~~S-------  398 (714)
T PRK15400        330 DSAWVPYTN--FSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHTT-------  398 (714)
T ss_pred             Eccchhhhc--cCcccCCcChhh-cCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHHHHcC-------
Confidence            999998764  333222  1121 345   5  899999999988888888877542 111111111111111       


Q ss_pred             cCCcchhHHHHHHHHHHHhc-HhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          317 NFSKGSSQIIAQYYQFIRLG-FEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       317 ~~tr~~~~~l~~~~~l~~lg-~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                       -|.+....+++-.+.+.+. ..|...+ ++++.+..++++|.+.+.
T Consensus       399 -TSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        399 -TSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT  444 (714)
T ss_pred             -CCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence             2455555677778878774 4787777 999999999999988654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.56  E-value=9.5e-14  Score=131.40  Aligned_cols=220  Identities=20%  Similarity=0.080  Sum_probs=163.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----  166 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----  166 (369)
                      |-...+|..    ++++.|.+.       .+..++|+.|+..+++.+...             ++.+++...-|.-    
T Consensus        77 Pt~~~le~~----iaal~ga~~-------~l~fsSGmaA~~~al~~L~~~-------------g~~iV~~~~~Y~gT~~~  132 (409)
T KOG0053|consen   77 PTRDVLESG----IAALEGAAH-------ALLFSSGMAAITVALLHLLPA-------------GDHIVATGDVYGGTLRI  132 (409)
T ss_pred             CchHHHHHH----HHHHhCCce-------EEEecccHHHHHHHHHHhcCC-------------CCcEEEeCCCcccHHHH
Confidence            445555555    899999985       788888898998888887642             4567766554433    


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +.+....+|+....++++      |++++++++++++++|++-+|+||+..+-||++|.++|+++      |+.++||+.
T Consensus       133 l~~~~~~~gie~~~vd~~------~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~------g~~vvVDnT  200 (409)
T KOG0053|consen  133 LRKFLPKFGGEGDFVDVD------DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKY------GFLVVVDNT  200 (409)
T ss_pred             HHHHHHHhCceeeeechh------hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhC------CCEEEEeCC
Confidence            455556778888888765      57889999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      ++.++.  ..|   .   ..|||.++-|.-||+++....  |+++.+..+.. ..+.....+++.            ...
T Consensus       201 f~~p~~--~~p---L---~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~-~~l~~~~~~lg~------------~~~  259 (409)
T KOG0053|consen  201 FGSPYN--QDP---L---PLGADIVVHSATKYIGGHSDVIGGSVVLNSEELA-SRLKFLQEDLGW------------CED  259 (409)
T ss_pred             cCcccc--cCh---h---hcCCCEEEEeeeeeecCCcceeeeEEecCcHHHH-HHHHHHHHHhcC------------CCC
Confidence            987532  222   1   237999999999999877554  66665433222 122211222222            224


Q ss_pred             HHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          325 IIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +..+|..++.+..-+++-.++.++|..+++.|++.+.+++-++
T Consensus       260 p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~Y  302 (409)
T KOG0053|consen  260 PFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYY  302 (409)
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEc
Confidence            7788888888877666644899999999999999998887654

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.56  E-value=2.4e-13  Score=138.53  Aligned_cols=225  Identities=12%  Similarity=0.009  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      .+..+..|+.||++..      -.+++|+|.+|..++.++..+             ++.|+++.+.|-|+..++.+.|+.
T Consensus       198 ~eAe~~aA~~fgAd~t------yfvvNGTS~~n~av~~a~~~~-------------Gd~VLvdRN~HKSv~~aLilsga~  258 (713)
T PRK15399        198 LEAEEYIARTFGAEQS------YIVTNGTSTSNKIVGMYAAPA-------------GSTLLIDRNCHKSLAHLLMMSDVV  258 (713)
T ss_pred             HHHHHHHHHHhCCCcE------EEEeCChHHHHHHHHHHhcCC-------------CCEEEeecccHHHHHHHHHHcCCe
Confidence            3556679999999963      578889999999888887653             579999999999999999999999


Q ss_pred             eEEEeccCCc----cccCH-----HHHHHHHhhc-----CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEe
Q 017569          178 LKEVKLEEGY----YVMNP-----VKAVELVDEN-----TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       178 v~~v~~~~~~----~~~d~-----~~L~~~i~~~-----~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                      +++++...+.    +.+++     +.++++|.+.     |+.+++++| |..|.+-|+++|.++|  .      -..+|+
T Consensus       259 PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~--g------~~~ilv  329 (713)
T PRK15399        259 PIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL--D------VPSIHF  329 (713)
T ss_pred             eEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh--C------CCEEEE
Confidence            9998764221    23455     9999999753     468888888 5559999999999988  2      224589


Q ss_pred             ecccccccccccCCCcc--cccc-CCCCcEE---EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCcccc
Q 017569          244 DAASGGFIAPFLYPDLE--WDFR-LPLVKSI---NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN  317 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~--~~~~-~~~~Dsi---~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~  317 (369)
                      |+|+|++..  +.|..+  ..+. ..++|.+   +-|.||.+.+-..++++.++.. .-...+........+        
T Consensus       330 DEAhgah~~--F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~-vd~~~~n~a~~m~~S--------  398 (713)
T PRK15399        330 DSAWVPYTH--FHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE-YDEETFNEAFMMHTS--------  398 (713)
T ss_pred             eccchhhhh--cCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC-CCHHHHHHHHHHHcC--------
Confidence            999998654  333221  1222 2257877   9999999998888899988653 111111111111111        


Q ss_pred             CCcchhHHHHHHHHHHHhc-HhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          318 FSKGSSQIIAQYYQFIRLG-FEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       318 ~tr~~~~~l~~~~~l~~lg-~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      -|.+....+++-.+.+.+. ..|...+ ++++.+..++++|++.+.
T Consensus       399 TSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~  444 (713)
T PRK15399        399 TSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLRE  444 (713)
T ss_pred             CCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence            2455555677778888885 5788877 999999999999988653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.55  E-value=1.3e-12  Score=127.92  Aligned_cols=252  Identities=12%  Similarity=-0.028  Sum_probs=150.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      ..|.+.+++.+.++........+.  .+...++.+.+++++|.+.       .+++++|++|+..++.+++.....   .
T Consensus        58 ~~~~i~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-------~~~~~SGs~A~e~al~~a~~~~~~---~  125 (401)
T PRK00854         58 CHPKILAAMVEQAGRLTLTSRAFR--NDQLAPLYEELAALTGSHK-------VLPMNSGAEAVETAIKAVRKWGYE---V  125 (401)
T ss_pred             CCHHHHHHHHHHHhhccccccccC--CHHHHHHHHHHHhhCCCCE-------EEEeCCcHHHHHHHHHHHHHHHHh---c
Confidence            357788888888765432211111  1233344455788887653       899999999999999998764211   0


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      .|.+..+.+|++... .|-+...+.. .+.             ++..+|      ..|+++|++++.+++++|++..+.+
T Consensus       126 ~g~~~~~~~vi~~~~~~HG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~i~~~~~aii~e~~~~  198 (401)
T PRK00854        126 KGVPEGQAEIIVCADNFHGRTLSIVG-FSTDPDARGGFGPFTPGFRVVP------FGDAEALEAAITPNTVAFLVEPIQG  198 (401)
T ss_pred             cCCCCCCceEEEECCCcCCccHHHHh-ccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCeEEEEEccccC
Confidence            122222345555554 4544332221 111             122222      1378999999998999999999999


Q ss_pred             CcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-ccccccCCCCcEEEEcCccCCCCC-CCeEE
Q 017569          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWDFRLPLVKSINVSGHKYGLVY-AGVGW  287 (369)
Q Consensus       214 ~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~  287 (369)
                      ++|.+.|    +++|.++|+++      ++++++|++|.++..   .+. ......-...|.++++  |++.+. +..|+
T Consensus       199 ~~G~~~~~~~~l~~l~~l~~~~------gi~lI~DEv~~g~g~---~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~  267 (401)
T PRK00854        199 EAGVIIPPAGYFTRVRELCTAN------NVTLILDEIQTGLGR---TGKLLAEEHEGIEADVTLIG--KALSGGFYPVSA  267 (401)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC---CchHhHHhhcCCCCCEEEec--ccccCCccCeEE
Confidence            9999876    99999999999      999999999985322   111 0011111135777764  888766 46788


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCC
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~  361 (369)
                      ++.+++ .. ..+..    ..   ...+. +. +........++|+.+..+++.+ +..++.+++.+.|+++++
T Consensus       268 v~~~~~-~~-~~l~~----~~---~~~t~-~~-~~~~~aa~~a~L~~l~~~~~~~-~~~~~~~~l~~~L~~~~~  329 (401)
T PRK00854        268 VLSNSE-VL-GVLKP----GQ---HGSTF-GG-NPLACAVARAALKVLTEEGMIE-NAAEMGAYFLEGLRSIRS  329 (401)
T ss_pred             EEEcHH-HH-hcccC----CC---CCCCC-Cc-CHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHhhcc
Confidence            877542 22 12110    00   01111 11 1222344445555554333322 777889999999988754

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.55  E-value=4e-13  Score=128.06  Aligned_cols=257  Identities=12%  Similarity=-0.085  Sum_probs=165.6

Q ss_pred             cCCChHHHHHHHH-HHhccCCCC------CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE-EeCCchHHHHHHHHH
Q 017569           65 TTWMEPECDKLVM-ASINKNYVD------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV-GTVGSSEAIMLAGLA  136 (369)
Q Consensus        65 ~~~~~~~v~~~~~-~~~~~n~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~-~t~Ggt~a~~~al~~  136 (369)
                      |...|+.|.+.+. +.++.+...      .-.++...++-+++.+.++++++.|.+    ..++ ++.|||.+.-.+.+.
T Consensus        12 Pa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~----y~Vlfl~GggT~~~ea~~~N   87 (364)
T PRK12462         12 PGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDE----YGVVFLQGGSSLQFSMIPMN   87 (364)
T ss_pred             CcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEeccHHHHHHHHHHH
Confidence            3344566655555 444432211      113567788888999999999999753    2344 445688888777777


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEE-ecCCCcch--HHHHHhhhcceeEEEeccC---CccccCHHHHHHHHhhcCcEEEEee
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIV-TGANVQVC--WEKFARYFEVELKEVKLEE---GYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi-~s~~~h~s--~~~~~~~~G~~v~~v~~~~---~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      +..+             +++++ +-...+.+  +.+.++.+| ++..+....   .+..++++++  .+.++..+|.+++
T Consensus        88 ll~~-------------g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~  151 (364)
T PRK12462         88 FSRP-------------GAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVS  151 (364)
T ss_pred             cCCC-------------CCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEcc
Confidence            6442             23232 22233333  445555666 565554211   1235566665  3445678999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ..|.+|...|     ++.+.+      +.++++|+..+.+..       +++++  ..|.+..++||.++ |+|.+++++
T Consensus       152 NETstGv~~~-----~~~~~~------~~llvvD~sS~~~s~-------pid~~--~~dvi~agsQKnlg-P~Gltvviv  210 (364)
T PRK12462        152 NETVEGLQFP-----DAAGLP------DSPLIADMSSDFMSR-------PFDVE--AYGMVYAHAQKNLG-PAGVTVAII  210 (364)
T ss_pred             CCCCceEecC-----cccccC------CCeEEEEcCchhhCC-------CCChH--HccEEEeeccccCC-CCceEEEEE
Confidence            9999999875     334346      889999998776443       23333  45999999999997 999999999


Q ss_pred             eCCCCcccccccccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh--hHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          291 RTKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE--VIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~--G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +++.+- ..-...+.|+...  ..+...-.|.+...+..+..+|+.+..+  |++.+  ++.+.|+.+++.+.++..|+
T Consensus       211 s~~al~-~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~  288 (364)
T PRK12462        211 RRALLE-RVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVI  288 (364)
T ss_pred             CHHHHh-hccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            875321 1111112222210  0011222488888888888999999887  99999  99999999999999998443

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.54  E-value=1.1e-12  Score=127.07  Aligned_cols=255  Identities=14%  Similarity=-0.030  Sum_probs=151.9

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.++++........+  ......++.+++++++|.+.       .++++||++|+..++.+++.....    
T Consensus        44 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~-------~~~~~sg~~a~~~a~~~~~~~~~~----  110 (379)
T TIGR00707        44 AHPKLVEALKEQLEKLVHVSNLY--YTEPQEELAEKLVEHSGADR-------VFFCNSGAEANEAALKLARKYTGD----  110 (379)
T ss_pred             CCHHHHHHHHHHHhhcccccccc--CCHHHHHHHHHHHhhCCCCE-------EEEeCCcHHHHHHHHHHHHHHhhc----
Confidence            34778888887776532211111  22345566677999998763       899999999999999877542110    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeE----EEeccCCcccc----CHHHHHHHHhhcCcEEEEeeCCCCcccC-
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELK----EVKLEEGYYVM----NPVKAVELVDENTICVAAILGSTLTGEF-  218 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~----~v~~~~~~~~~----d~~~L~~~i~~~~~~v~~~~~~~~tG~~-  218 (369)
                      .|  ..+++|++++++|..+...+...+....    ..++..+ ...    |+++|++.+++++++|+++.+++++|.. 
T Consensus       111 ~~--~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~  187 (379)
T TIGR00707       111 KG--KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPG-FSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNP  187 (379)
T ss_pred             cC--CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCC-ceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCcc
Confidence            00  0136788888776554444444443321    1222221 222    8999999998889999988777777754 


Q ss_pred             ---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          219 ---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       219 ---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                         +++++|.++|+++      ++++++|++|.++..  ..........-...|.++  ..|.++++++.|+++..+ +.
T Consensus       188 ~~~~~l~~i~~l~~~~------~~~~i~De~~~~~~~--~g~~~~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~-~~  256 (379)
T TIGR00707       188 ASAEFLKALREICKDK------DALLIFDEVQTGIGR--TGKFFAYEHYGIEPDIIT--LAKGLGGGVPIGATLAKE-EV  256 (379)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhhhHHhcCCCCCEEE--EcccccCCcccEEEEEcH-HH
Confidence               2489999999999      999999999976422  100001111111245555  579888778899988753 22


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      . ..+..    ... ...+    +-+.....++.++|+.+...++.+ +..++.++++++|++.+
T Consensus       257 ~-~~~~~----~~~-~~~~----~~~~~~~~aa~aaL~~~~~~~~~~-~~~~~~~~~~~~l~~~~  310 (379)
T TIGR00707       257 A-EAFTP----GDH-GSTF----GGNPLACAAALAVLEVIEKERLLE-NVKEKGDYFKERLEELG  310 (379)
T ss_pred             H-hhhcC----CCC-CCCC----CCCHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH
Confidence            2 22211    000 0011    122233455556666664333322 66778888888887653

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.53  E-value=3e-13  Score=129.02  Aligned_cols=160  Identities=12%  Similarity=-0.012  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      ++++.+++.+|.++     ..+++|+|+++++.+++.. ..              ...|++++|+|..+...++..|+++
T Consensus        44 ~lr~~ia~~~~~~~-----~~I~it~Gs~~~l~~~~~~-~~--------------~~~vv~~~P~y~~y~~~~~~~G~~v  103 (332)
T PRK06425         44 DIEDQIKIYTQGLK-----IKVLIGPGLTHFIYRLLSY-IN--------------VGNIIIVEPNFNEYKGYAFTHGIRI  103 (332)
T ss_pred             HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHH-hC--------------CCcEEEeCCChHHHHHHHHHcCCeE
Confidence            44455888999986     3489999999999887753 22              1257777999999999999999999


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      +.||+++  ..+|.+.+++   .++++|++++|+||||.+.+   +++|.++|+++      ++++++|++|+.+...  
T Consensus       104 ~~vp~~~--~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~------~~~iI~DE~Y~~~~~~--  170 (332)
T PRK06425        104 SALPFNL--INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKK------GALLFIDEAFIDFVPN--  170 (332)
T ss_pred             EEEeCCc--ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHc------CCEEEEecchhccccc--
Confidence            9999975  3556666553   37899999999999999865   67777888899      9999999999875431  


Q ss_pred             CCCccccccCCCCcEEE-EcCccCCC-CCCCeEEEEEe
Q 017569          256 YPDLEWDFRLPLVKSIN-VSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       256 ~~~~~~~~~~~~~Dsi~-~~~hK~l~-~p~g~g~l~~~  291 (369)
                      ............-..+. -+.-|.++ .....|+++..
T Consensus       171 ~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~  208 (332)
T PRK06425        171 RAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD  208 (332)
T ss_pred             cchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecC
Confidence            10000111001112344 35788776 77889999874

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.53  E-value=1.7e-12  Score=126.95  Aligned_cols=246  Identities=11%  Similarity=-0.070  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+.++........++.  ....++.+++++++|.+.    .....+++||++|+..++..++..        
T Consensus        61 ~p~v~~ai~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~~~----~~~v~~~~sgsea~~~al~~~~~~--------  126 (398)
T PRK03244         61 HPAVVEAVTRQLATLGHVSNLFAT--EPQIALAERLVELLGAPE----GGRVFFCNSGAEANEAAFKLARLT--------  126 (398)
T ss_pred             CHHHHHHHHHHHHhccCccCccCC--HHHHHHHHHHHHhCCCCC----CCEEEEeCchHHHHHHHHHHHHHH--------
Confidence            577888888877652211111221  122366677888888541    124899999999999999987663        


Q ss_pred             CCCCCCCeEEecCCCcc-hHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          149 GKPYDKPNIVTGANVQV-CWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~-s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      |    +..|+..+.+|. ....+....|..            +..+|.      .|+++|++.+.+++++|++..+.+++
T Consensus       127 g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~~~~~~~aviiep~~~~~  196 (398)
T PRK03244        127 G----RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY------GDVDALAAAVDDDTAAVFLEPIQGEA  196 (398)
T ss_pred             C----CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC------CCHHHHHHhhcCCeEEEEEecccCCC
Confidence            1    245665554443 333333333322            222221      27899999997788899999999999


Q ss_pred             ccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          216 GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       216 G~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      |.+.|    +++|.++|+++      ++++|+|++|.++..  ......+...-...|.+++  .|+++++++.|+++.+
T Consensus       197 G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~  266 (398)
T PRK03244        197 GVVPPPAGYLAAAREITDRH------GALLVLDEVQTGIGR--TGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLAF  266 (398)
T ss_pred             CCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--cchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEEc
Confidence            99876    89999999999      999999999976322  1100001111113566665  5998877888999886


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      ++ . .+.+..       .....+..++  .....+...+|+.+..+++.+ +..++.++|++.|++++
T Consensus       267 ~~-~-~~~~~~-------~~~~~t~~~~--~~~~aaa~a~l~~~~~~~~~~-~~~~~~~~l~~~L~~~~  323 (398)
T PRK03244        267 GP-A-ADLLTP-------GLHGSTFGGN--PVACAAALAVLDTIASEGLLE-NAERLGEQLRAGIEALG  323 (398)
T ss_pred             HH-H-HhhccC-------CCCcCCCCCC--HHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHhcC
Confidence            43 2 122210       0001111111  122344445555555444332 77788899999999865

>PLN02452 phosphoserine transaminase

Probab=99.53  E-value=4.1e-13  Score=129.02  Aligned_cols=256  Identities=13%  Similarity=-0.022  Sum_probs=164.8

Q ss_pred             cCCChHHHHHHHHHH-hccC---CCCC---CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMAS-INKN---YVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~-~~~n---~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      |...++.|.+.+..- ++-+   ..-.   -.++...++-+++++.+.++++.+.+.   ....+..|||.++-.++..+
T Consensus        15 P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y---~v~~l~Gsgt~~~ea~~~nl   91 (365)
T PLN02452         15 PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY---EVLFLQGGASTQFAAIPLNL   91 (365)
T ss_pred             CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc---eEEEEeCccHHHHHHHHHhc
Confidence            334456666665543 3321   1111   134567788899999999999986421   22445567788887777766


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCC--ccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      ..+             +.++++-....++  +.+.++.+|...+.......  ...+++++++  ..++...|.+++..|
T Consensus        92 ~~~-------------~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnET  156 (365)
T PLN02452         92 CKP-------------GDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANET  156 (365)
T ss_pred             CCC-------------CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCC
Confidence            432             2344444444444  55666777864443322221  1256777753  245678999999999


Q ss_pred             Cccc-CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          214 LTGE-FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       214 ~tG~-~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      .+|. +.|++++.            ++.++||+++..+..       +++++..++|.  .++||++ +|+|.|++++|+
T Consensus       157 stGv~~~~~~~i~------------~~~lvVDa~Ss~g~~-------pidv~~~~v~~--~saqK~l-GP~Gl~~v~vr~  214 (365)
T PLN02452        157 IHGVEFKDYPDVG------------NVPLVADMSSNFLSK-------PVDVSKYGVIY--AGAQKNV-GPSGVTIVIIRK  214 (365)
T ss_pred             CCcEecCcccccC------------CCeEEEECCccccCc-------ccCHHHcCEEE--Eeccccc-CCCCeEEEEEcH
Confidence            9999 58876653            468999999887655       34444334544  5899988 599999999986


Q ss_pred             CCCcccccccccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhc-CC
Q 017569          293 KDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHS-SY  361 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~-g~  361 (369)
                      +.+. ..-...+.|....  ..+..+.+|.+...+.++..+|+.+..+ |++.+  |+.+++++|++.|++. |+
T Consensus       215 ~~l~-~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~  288 (365)
T PLN02452        215 DLIG-NARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF  288 (365)
T ss_pred             HHHh-hcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5321 1101111222110  0111233788888899999999999876 89988  9999999999999985 55

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.50  E-value=1.5e-12  Score=123.99  Aligned_cols=204  Identities=13%  Similarity=-0.018  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      .+++.+++.+|.+.       +++|+|+++++.+++.+  .             .+++|++++|+|..+...++.+|+++
T Consensus        53 ~Lr~~ia~~~~~~~-------I~it~Gs~~al~~~~~~--~-------------~gd~v~v~~P~y~~~~~~~~~~g~~~  110 (330)
T PRK05664         53 GLEAAARAYYGAPQ-------LLPVAGSQAAIQALPRL--R-------------APGRVGVLSPCYAEHAHAWRRAGHQV  110 (330)
T ss_pred             HHHHHHHHHhCCCC-------EEECcCHHHHHHHHHHc--c-------------CCCEEEEcCCChHHHHHHHHHcCCeE
Confidence            34455788887653       89999999999776431  1             14789999999999999999999999


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      +.||++         ++++++ +++++++++.|+||||.+.+   +++|+++|+++      ++++++|.+|..+.. . 
T Consensus       111 ~~v~~~---------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~------~~~iI~DE~y~~~~~-~-  172 (330)
T PRK05664        111 RELDEA---------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAAR------GGWLVVDEAFMDNTP-Q-  172 (330)
T ss_pred             EEechh---------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhc------CCEEEEECCcccCCC-c-
Confidence            988764         244555 36788899999999999966   55666667888      999999999975321 0 


Q ss_pred             CCCccccccCCCCc-EEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHH
Q 017569          256 YPDLEWDFRLPLVK-SINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       256 ~~~~~~~~~~~~~D-si~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~  333 (369)
                       +. ...+. ..-. .+.-+..|.++ .....|+++.. ++.. ..+.....       .+.  .+     .+.++++..
T Consensus       173 -~s-~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~-~~~~~~~~-------~~~--~~-----~~~~~~~~~  233 (330)
T PRK05664        173 -HS-LAACA-HRPGLIVLRSFGKFFGLAGARLGFVLAE-PALL-RALAELLG-------PWT--VS-----GPTRWLAQA  233 (330)
T ss_pred             -cc-ccccc-cCCCEEEEeeccccccCCCcceEEEEeC-HHHH-HHHHHhcC-------CCC--CC-----HHHHHHHHH
Confidence             10 01111 1112 33445778875 77899999873 2222 22211100       110  11     222333334


Q ss_pred             HhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          334 RLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       334 ~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+.... .+++  +..+..+++.+.|++.|+
T Consensus       234 ~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  264 (330)
T PRK05664        234 ALADTPWQRRQRERLLAASQRLAALLRRHGL  264 (330)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            442222 2223  666677889999988764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.50  E-value=3.7e-12  Score=122.04  Aligned_cols=248  Identities=14%  Similarity=-0.000  Sum_probs=169.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .+|.+.+++.+++.........+   .+...+-.++.+.+++++|.+.       .++.++|=.||..++-++..+    
T Consensus        54 ~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~-------al~f~SGy~AN~~~i~~l~~~----  122 (388)
T COG0156          54 SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA-------ALLFSSGFVANLGLLSALLKK----  122 (388)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEEcccchhHHHHHHHhcCC----
Confidence            35677888777776632222222   2444444455555999999985       666677788887777776542    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (369)
                               ++.|+.-+..|.|+...+++.+++++..+-      -|+++||+.+.+      +.++|+.-..-...|.+
T Consensus       123 ---------~dli~~D~lnHASiidG~rls~a~~~~f~H------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdi  187 (388)
T COG0156         123 ---------GDLIFSDELNHASIIDGIRLSRAEVRRFKH------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDI  187 (388)
T ss_pred             ---------CcEEEEechhhhhHHHHHHhCCCcEEEecC------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCc
Confidence                     567888888999999999999999877764      378999999977      35788888888899999


Q ss_pred             CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-----cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-----EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-----~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .|+++|++++++|      +.|++||.||+.+++.   +..     .+.+....+|.++....|.++   +.|.++..+.
T Consensus       188 ApL~~l~~L~~ky------~a~L~VDEAHa~Gv~G---~~GrG~~e~~g~~~~~vdi~~gTlsKAlG---s~Gg~v~g~~  255 (388)
T COG0156         188 APLPELVELAEKY------GALLYVDEAHAVGVLG---PNGRGLAEHFGLEPEEVDIIVGTLGKALG---SSGGYIAGSA  255 (388)
T ss_pred             CCHHHHHHHHHHh------CcEEEEEccccccccC---CCCccHHHHhCCCCccceEEEEEchhhhc---ccCceeeCcH
Confidence            9999999999999      9999999999987762   211     111212346899999999986   2333444433


Q ss_pred             CCccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCc
Q 017569          294 DDLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       294 ~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ... +.+.. ..+|+..        .+-+...+.++-.+++.+- ++-..+ +..++++++++.++..|+..
T Consensus       256 ~~~-d~L~~~ar~~ifS--------talpP~~aaa~~~al~~l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~  317 (388)
T COG0156         256 ALI-DYLRNRARPFIFS--------TALPPAVAAAALAALRILE-EGPERRERLQELAAFFRSLLKALGLVL  317 (388)
T ss_pred             HHH-HHHHHhCCceecc--------CCCCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            222 22222 2334332        1222333555667777774 344444 89999999998888878764

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.48  E-value=2.4e-12  Score=120.03  Aligned_cols=183  Identities=14%  Similarity=0.051  Sum_probs=137.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      +-|...+++++.+.+.+..|-...+++ ...+++.|+|.||...+.++.++             ++.-++|.|.|+.+..
T Consensus       120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP-~~~Vv~~G~T~ane~l~fcLadp-------------gdafLvPtPyY~gfdr  185 (471)
T KOG0256|consen  120 YHGLPSFRQAVAEFMERARGNRVKFDP-ERVVVTNGATSANETLMFCLADP-------------GDAFLVPTPYYPGFDR  185 (471)
T ss_pred             ccCchHHHHHHHHHHHHHhCCCCccCc-cceEEecccchhhHHHHHHhcCC-------------CceeeecCCCCCcccc
Confidence            458899999999999999887765533 45899999999997776666553             4689999999999887


Q ss_pred             HHhh-hcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCC
Q 017569          170 FARY-FEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       170 ~~~~-~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~  238 (369)
                      -+++ .|++++.|.+.. +++++++++||+++.+      +.+.|+++.|+||-|.+-+   +..+..++.++      +
T Consensus       186 dl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k------n  259 (471)
T KOG0256|consen  186 DLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK------N  259 (471)
T ss_pred             cceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc------c
Confidence            7764 488898888864 6799999999998875      4689999999999999854   66777888888      9


Q ss_pred             ceEEeecccccccccccCCCc--------cccccCCCCcEEEEcCccCCCC-CCCeEEEEEeCCCC
Q 017569          239 TPIHVDAASGGFIAPFLYPDL--------EWDFRLPLVKSINVSGHKYGLV-YAGVGWVVWRTKDD  295 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~--------~~~~~~~~~Dsi~~~~hK~l~~-p~g~g~l~~~~~~~  295 (369)
                      +.+++|++|.+.++.  .++.        ...+....+ -+..+..|=++. +...|+++..++..
T Consensus       260 iHvI~DEIya~sVF~--~~~F~Sv~ev~~~~~~~~~rv-HivyslSKD~GlpGfRvGviYS~ne~V  322 (471)
T KOG0256|consen  260 IHVISDEIYAGSVFD--KSEFRSVLEVRKDPHLDPDRV-HIVYSLSKDFGLPGFRVGVIYSNNEDV  322 (471)
T ss_pred             eEEEeehhhcccccC--ccCceEHHHHhhccccCCCcE-EEEEEeccccCCCceEEEEEEecChHH
Confidence            999999999987652  2211        111111222 244565565544 45778888766543

>PRK07505 hypothetical protein; Provisional

Probab=99.47  E-value=9.5e-12  Score=121.79  Aligned_cols=196  Identities=15%  Similarity=0.037  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHhccCC-CCCCCC--cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY-VDMDEY--PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~-~~~~~~--~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|.+.+++.+.++... ..+..+  ....+...++.+.+++++|. .       .+++++|++|+..++..+...+. 
T Consensus        60 ~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-------~~~~~sG~~a~~~ai~~~~~~~~-  130 (402)
T PRK07505         60 DTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-S-------VLTFTSCSAAHLGILPLLASGHL-  130 (402)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-C-------EEEECChHHHHHHHHHHHHhccc-
Confidence            346888888888876421 121111  12355666788889999987 3       56666788999888876543110 


Q ss_pred             HHHhcCCCCCCCeE-EecCCCcchHHHHH--hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC
Q 017569          144 KRKEQGKPYDKPNI-VTGANVQVCWEKFA--RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (369)
Q Consensus       144 ~~~~~g~~~~~~~V-i~s~~~h~s~~~~~--~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (369)
                             ..++..| +.....|.++....  ...+.+++.+|.      .|+++|++++++++++++++.|+||+|.+.|
T Consensus       131 -------~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~------~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~  197 (402)
T PRK07505        131 -------TGGVPPHMVFDKNAHASLNILKGICADETEVETIDH------NDLDALEDICKTNKTVAYVADGVYSMGGIAP  197 (402)
T ss_pred             -------CCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC------CCHHHHHHHHhcCCCEEEEEecccccCCcCC
Confidence                   1012334 44557787764322  223456666664      2789999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccc-cccCCCcccccc--CCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFR--LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~--~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      +++|.++|+++      ++++++|++|+...+ ++-.......+.  ......++.+.-|.++++ | |++++.+
T Consensus       198 ~~~i~~l~~~~------~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g~~~~~~  264 (402)
T PRK07505        198 VKELLRLQEKY------GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-GVIMLGD  264 (402)
T ss_pred             HHHHHHHHHHc------CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-eEEEeCC
Confidence            99999999999      999999999853211 111000000111  122334455788987644 3 6665444

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.45  E-value=2.1e-11  Score=121.09  Aligned_cols=196  Identities=15%  Similarity=0.001  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHhcc---C-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           70 PECDKLVMASINK---N-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        70 ~~v~~~~~~~~~~---n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ....+.+...+..   . ...+....+...|++.+.+++....|...+.   ..+++|+|+.+|+.+++..+.++     
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~---~~IiiT~G~q~al~l~~~~l~~p-----  178 (459)
T COG1167         107 EALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEP---EQIVITSGAQQALDLLLRLLLDP-----  178 (459)
T ss_pred             HHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCc---CeEEEeCCHHHHHHHHHHHhCCC-----
Confidence            4455666555532   2 3445555789999999999999778887643   35999999999999888887653     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEE-EeeCCCCcccCCCH--
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVA-AILGSTLTGEFEDV--  221 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~-~~~~~~~tG~~~~l--  221 (369)
                              ++.|++-+|+|+....+.+.+|++++.||+|++  -||+++|++.+.. ++++++ .-.-+||||...+.  
T Consensus       179 --------Gd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~--G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~r  248 (459)
T COG1167         179 --------GDTVLVEDPTYPGALQALEALGARVIPVPVDED--GIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLER  248 (459)
T ss_pred             --------CCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCC--CCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHH
Confidence                    579999999999999999999999999999864  7999999999986 566655 55688999999765  


Q ss_pred             -HHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--ccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          222 -KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       222 -~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                       ++|.++|+++      ++|++-|..|+.+..  ..+..+  ..++..+==....++-|.+....++|++++.
T Consensus       249 R~~Ll~lA~~~------~~~IIEDD~y~el~~--~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p  313 (459)
T COG1167         249 RKALLALAEKY------DVLIIEDDYYGELRY--DGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAP  313 (459)
T ss_pred             HHHHHHHHHHc------CCeEEeeCcchhhhc--CCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCC
Confidence             5799999999      999999999997554  211111  1111111122334577999988999999874

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.43  E-value=5.6e-12  Score=120.61  Aligned_cols=206  Identities=12%  Similarity=-0.026  Sum_probs=132.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      ++++++++.+|.+..    ..+++|+|+++++..... +..              ...|+++.|+|..+...++..|+++
T Consensus        57 ~L~~~ia~~~~~~~~----~~I~i~~Gs~e~i~~l~~-~~~--------------~g~v~v~~P~y~~y~~~~~~~g~~~  117 (339)
T PRK06959         57 GLAACAARYYGAPDA----AHVLPVAGSQAAIRALPA-LLP--------------RGRVGIAPLAYSEYAPAFARHGHRV  117 (339)
T ss_pred             HHHHHHHHHhCCCCc----ccEEECcCHHHHHHHHHH-hcC--------------CCeEEEcCCCcHHHHHHHHHCCCEE
Confidence            566679999999731    248999999999865433 222              1248889999999999999999998


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH---HHHhhhccCCCceEEeeccccccccccc
Q 017569          179 KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL---LTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       179 ~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l---~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      +.+|.+.       +.    +.+.++++++++|+||||.+-+.+++.++   |+++      +.++++|++|..+..  .
T Consensus       118 ~~v~~~~-------~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~------~~~vI~DEay~~~~~--~  178 (339)
T PRK06959        118 VPLDEAA-------DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAAR------GGTLIVDEAFADTLP--A  178 (339)
T ss_pred             Eeecccc-------hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccCCC--c
Confidence            8887653       11    22345789999999999999776665555   5567      899999999987532  0


Q ss_pred             CCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHH
Q 017569          256 YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       256 ~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~  333 (369)
                       +.. ..+ ...++ .+.-+.-|.++ .+...|+++.. ++.. +.+...    .   ..+    +-   ..+.+.++..
T Consensus       179 -~s~-~~~~~~~~v-i~l~SfSK~~gl~GlRiGy~v~~-~~li-~~l~~~----~---~~~----~v---s~~~q~a~~~  239 (339)
T PRK06959        179 -ASL-AAHTDRPGL-VVLRSVGKFFGLAGVRAGFVLAA-PALL-AALRDA----L---GAW----TV---SGPARHAVRA  239 (339)
T ss_pred             -ccc-hhccCCCCE-EEEecChhhcCCcchheEEEecC-HHHH-HHHHHh----c---CCC----CC---cHHHHHHHHH
Confidence             110 011 11221 34456788775 77899999874 2222 222110    0   011    11   1344555555


Q ss_pred             HhcHhhHHHH---HhhHHHHHHHHHHHhcCC
Q 017569          334 RLGFEVIPSF---CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       334 ~lg~~G~~~~---~~~~~a~~l~~~L~~~g~  361 (369)
                      .+....+.+.   +..+..+++.+.|++.|+
T Consensus       240 ~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  270 (339)
T PRK06959        240 AFADAAWQAAMRERLAADGARLAALLRAHGF  270 (339)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            5544444433   666777889999988764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.43  E-value=2.8e-11  Score=118.22  Aligned_cols=254  Identities=12%  Similarity=-0.026  Sum_probs=149.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++........  .......++.+.++++.+.+       ...++++|++|+..|+..++..+...  
T Consensus        56 h~~p~v~~ai~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~-------~~~~~~SGseA~e~Alk~a~~~~~~~--  124 (396)
T PRK04073         56 HRHPKIIQALKDQADKVTLTSRA--FHSDQLGPWYEKVAKLTGKD-------MVLPMNTGAEAVETAIKAARRWAYDV--  124 (396)
T ss_pred             CCCHHHHHHHHHHHhhccccccc--cCCHHHHHHHHHHHhcCCCC-------eEEEcCChHHHHHHHHHHHHHHhhhc--
Confidence            44688888888877653222111  12223334555577776654       27899999999999999987642210  


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                       .|....+.+|+... ..|-....++...+-.            +..+|.      -|+++|++++++++++|+++.+++
T Consensus       125 -~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~i~~~~~~viiep~~~  197 (396)
T PRK04073        125 -KGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY------GDLEALKAAITPNTAAFLVEPIQG  197 (396)
T ss_pred             -cCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC------CCHHHHHHhcccCeEEEEEcCccC
Confidence             12111234566554 4554444444433311            122221      178999999988899999999999


Q ss_pred             CcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEE
Q 017569          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (369)
Q Consensus       214 ~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l  288 (369)
                      ++|.+.|    +++|.++|+++      ++++++|++|.++...  ......+..-...|.+++  .|.++++ +..|++
T Consensus       198 ~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~~--g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~  267 (396)
T PRK04073        198 EAGINIPPEGFLKAARELCKEE------NVLFIADEIQTGLGRT--GKLFACDWDNVTPDMYIL--GKALGGGVFPISCV  267 (396)
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhCCCcC--cHHHHhhhcCCCCCEEEe--cccccCCCCcceEE
Confidence            9999854    89999999999      9999999999864221  000011111124677775  5877665 678888


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      +.++ +.. +.+..      . ....+..+. +. ...+.-++|+.+..+++.+ +..++.++|.+.|++++
T Consensus       268 ~~~~-~i~-~~~~~------~-~~~~t~~~~-~~-~~aaa~aaL~~~~~~~l~~-~~~~~~~~l~~~L~~l~  327 (396)
T PRK04073        268 AANR-DIL-GVFTP------G-SHGSTFGGN-PL-ACAVSIAALEVLEEEKLPE-RSLELGEYFKEQLKEID  327 (396)
T ss_pred             EEcH-HHH-hhhcC------C-CCCCCCCCC-HH-HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHhhc
Confidence            7753 222 12110      0 001111121 11 1222335555554444433 66677899999998864

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.42  E-value=3.2e-11  Score=117.73  Aligned_cols=198  Identities=14%  Similarity=-0.047  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      .|.+.+++.+.++......  ......++.++.++++++.|.+.       ..+++||++|+..++++++.....     
T Consensus        57 ~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~-------v~~~~gg~eA~~~al~~a~~~~~~-----  122 (396)
T PRK02627         57 HPKLVEAIQEQAAKLIHTS--NLYYIEPQEELAEKLVELSGMDK-------VFFCNSGAEANEAAIKLARKYGHK-----  122 (396)
T ss_pred             CHHHHHHHHHHHhhccccc--cccCCHHHHHHHHHHHhhcCCCE-------EEECCCcHHHHHHHHHHHHHHhcc-----
Confidence            4778888887776432111  11235667778888998877643       899999999999999988764210     


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhc-ceeE---EEeccCCcc----ccCHHHHHHHHhhcCcEEEEeeCCCCccc-C-
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFE-VELK---EVKLEEGYY----VMNPVKAVELVDENTICVAAILGSTLTGE-F-  218 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G-~~v~---~v~~~~~~~----~~d~~~L~~~i~~~~~~v~~~~~~~~tG~-~-  218 (369)
                       ....+++|++..+++..+...+...+ ....   ..++.. ++    ..|+++|++++.+++++|+++.+++++|. + 
T Consensus       123 -~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~  200 (396)
T PRK02627        123 -KGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVE-GFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPA  200 (396)
T ss_pred             -cCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCC-CceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccC
Confidence             00112567777766544333332222 2111   112111 11    12899999999888999999988899884 3 


Q ss_pred             --CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          219 --EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       219 --~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                        +.+++|.++|+++      ++++++|++|.++..  ......+...-...|.++  ..|.++++...|+++.++
T Consensus       201 ~~~~l~~l~~l~~~~------~~~lI~DE~~~g~g~--~g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~  266 (396)
T PRK02627        201 DKEYLQALRELCDEN------GILLILDEVQTGMGR--TGKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKE  266 (396)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEechhcCCCc--cCceeeehhcCCCCCEEE--EcchhhCCcccEEEEEcH
Confidence              3499999999999      999999999986432  111001111111246555  448877777889998754

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.42  E-value=5e-12  Score=124.35  Aligned_cols=229  Identities=10%  Similarity=-0.016  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      ++..+..++.||++..      -.+++|.|.||...+.++..+             ++.|+++.+.|-|...++.+.|+.
T Consensus        73 ~eAqe~aA~~fgAd~t------yFvvNGTS~ank~vi~a~~~~-------------GD~VLvdRN~HKSi~~glilaGa~  133 (557)
T COG1982          73 KEAQELAARVFGADHT------YFVVNGTSTANKAVINAVLTP-------------GDKVLVDRNCHKSIHHGLILAGAT  133 (557)
T ss_pred             HHHHHHHHHHhCCCce------EEEECCccHHHHHHHHhhcCC-------------CCEEEecCCccHHHHHHHHHcCCc
Confidence            3556679999999963      577889999998888887653             589999999999999999999999


Q ss_pred             eEEEeccCCc-----cccCHHHHHHHHhhc--C-cEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          178 LKEVKLEEGY-----YVMNPVKAVELVDEN--T-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       178 v~~v~~~~~~-----~~~d~~~L~~~i~~~--~-~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      ++++....+.     +.++.+.+++++.+.  . ++++++.||.. |.+-++++|.+.++..      ++|+.+|.+++.
T Consensus       134 Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYd-Gv~~n~~~i~~~~~~~------~a~v~~deah~~  206 (557)
T COG1982         134 PVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYD-GVCYNLRKIVELLHHY------GAWVLYDEAHPA  206 (557)
T ss_pred             eEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCccc-eEeecHHHHHHHHhhc------CceEEhhhcCcc
Confidence            8888764332     578999999988654  3 66777877555 9999999999999999      999999999986


Q ss_pred             ccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc-cccccccCccCCCCCCccccCCcchhHHHH
Q 017569          250 FIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-DELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~  327 (369)
                      ..-  .++..+ +.. ..++|.++-|.||.+.+-..++++.+++...+. ..+........        ..|.+....++
T Consensus       207 ~~~--~~~~l~-~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~--------STSPsY~l~AS  275 (557)
T COG1982         207 HFD--FSPMLP-ESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQ--------STSPSYPLMAS  275 (557)
T ss_pred             ccc--ccccCc-chhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHc--------cCCchHHHHHH
Confidence            543  233222 222 368999999999999888888889888642221 11111111111        13444555566


Q ss_pred             HHHHHHHhcHhhHHHH-----HhhHHHHHHHHHHHhcCCCc
Q 017569          328 QYYQFIRLGFEVIPSF-----CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       328 ~~~~l~~lg~~G~~~~-----~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +-.+-...|..|.+.+     ..++..+++++..++.++|+
T Consensus       276 lD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~  316 (557)
T COG1982         276 LDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFP  316 (557)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence            6666666677787774     55666667777777777554

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.41  E-value=4.2e-11  Score=116.68  Aligned_cols=255  Identities=11%  Similarity=-0.110  Sum_probs=147.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+++-......  .......++.+.++++.+.+       ...+++||++|+..++++++....    .
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~-------~v~~~~sGseA~~~al~~ar~~~~----~  114 (389)
T PRK01278         48 AHPHLVEALKEQAEKLWHVSNL--YRIPEQERLAERLVENSFAD-------KVFFTNSGAEAVECAIKTARRYHY----G  114 (389)
T ss_pred             CCHHHHHHHHHHHHhcCccccc--cCChHHHHHHHHHHhhCCCC-------EEEEcCCcHHHHHHHHHHHHHHHH----h
Confidence            4577888888877642221111  11223334556677776543       389999999999999999876421    1


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEE----eccCCccc----cCHHHHHHHHhhcCcEEEEeeCCCCcccC-
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV----KLEEGYYV----MNPVKAVELVDENTICVAAILGSTLTGEF-  218 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v----~~~~~~~~----~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-  218 (369)
                      +|.. .+.+|++.++.|..+...+...+......    |..+ ++.    .|++++++++++++++|++...++++|.. 
T Consensus       115 ~G~~-~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~  192 (389)
T PRK01278        115 KGHP-ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVP-GFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRP  192 (389)
T ss_pred             cCCC-CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCC-CceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcC
Confidence            2211 23578887776665444443333322221    1111 122    58999999998889999999888887743 


Q ss_pred             ---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          219 ---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       219 ---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                         +++++|.++|+++      ++++++|++|.++..  ...-......-...|.++  ..|.+.+.+..|+++.+++ .
T Consensus       193 ~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~t--~sK~l~~G~~ig~~~~~~~-~  261 (389)
T PRK01278        193 APDEFLKGLRQLCDEN------GLLLIFDEVQCGMGR--TGKLFAHEWAGVTPDIMA--VAKGIGGGFPLGACLATEE-A  261 (389)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CCcceeecccCCCCCEEE--EehhccCCcceEEEEEcHH-H
Confidence               4799999999999      999999999986432  111001111111245554  5688776677899887543 2


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      . +.+..       .....+.  +-+.....++.++|+.+..+++.+ +..++.++++++|+++
T Consensus       262 ~-~~~~~-------~~~~~t~--~~~~~~~aaa~a~l~~l~~~~~~~-~~~~~~~~l~~~l~~l  314 (389)
T PRK01278        262 A-KGMTP-------GTHGSTY--GGNPLAMAVGNAVLDVILAPGFLD-NVQRMGLYLKQKLEGL  314 (389)
T ss_pred             H-hccCC-------CCCCCCC--CccHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH
Confidence            1 22110       0001111  111122333334566554444332 5666677777777653

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.41  E-value=3.3e-11  Score=118.21  Aligned_cols=256  Identities=14%  Similarity=-0.009  Sum_probs=158.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|.+.++..++++........+   .+...+.+++.+.+++++|.+.       .++.++|-.||+.++.++......
T Consensus       116 ~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~-------all~sSGy~AN~~~i~aL~~~~~~  188 (476)
T PLN02955        116 SSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED-------CLVCPTGFAANMAAMVAIGSVASL  188 (476)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc-------EEEECChHHHHHHHHHHHhhcccc
Confidence            346888888888877654333322   2555555566666999999986       788889999998888776311000


Q ss_pred             HHHhcCC--CCCCCeEEecCCCcchHHHHHhhh----cceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCC
Q 017569          144 KRKEQGK--PYDKPNIVTGANVQVCWEKFARYF----EVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTL  214 (369)
Q Consensus       144 ~~~~~g~--~~~~~~Vi~s~~~h~s~~~~~~~~----G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~  214 (369)
                       ....+.  ..+++.|+.-...|.|+...+++.    ++++..++-+      |+++|+++++.   +.++|++...-++
T Consensus       189 -~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN------D~~~Le~~L~~~~~~~~~Vv~EgV~Sm  261 (476)
T PLN02955        189 -LAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC------DMYHLNSLLSSCKMKRKVVVTDSLFSM  261 (476)
T ss_pred             -ccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC------CHHHHHHHHHhCCCCceEEEEeCCCCC
Confidence             000000  112346777778899999999886    4555554432      68889888864   3467777777888


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .|.+.|+++|.++|+++      ++++++|.|++.+++..-.......+. ...+|.++.+..|.++...  |+++.++ 
T Consensus       262 dGdiapL~eL~~L~~~~------ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--Gfi~gs~-  332 (476)
T PLN02955        262 DGDFAPMEELSQLRKKY------GFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--GFIACSK-  332 (476)
T ss_pred             CCCcCCHHHHHHHHHHc------CcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC--ceeecHH-
Confidence            99999999999999999      999999999997765211000011121 2467889999999975333  5566543 


Q ss_pred             CCccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHH
Q 017569          294 DDLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFF  355 (369)
Q Consensus       294 ~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~  355 (369)
                      +.. +.+.. ...|..+        ..-+...+.+.-++++.+-.+. ..+ +..++.+||++.
T Consensus       333 ~~~-~~l~~~~~~~ifS--------talpp~~aaa~laal~l~~~~~-~~r~~L~~n~~~fr~~  386 (476)
T PLN02955        333 KWK-QLIQSRGRSFIFS--------TAIPVPMAAAAYAAVVVARKEK-WRRKAIWERVKEFKAL  386 (476)
T ss_pred             HHH-HHHHHhCCCCeec--------ccccHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence            222 22211 1122221        1112222344445555553332 233 778888888874

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.41  E-value=4e-11  Score=109.08  Aligned_cols=234  Identities=13%  Similarity=0.024  Sum_probs=168.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc-----ch
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-----VC  166 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h-----~s  166 (369)
                      ....+-+.+...++.++|+...+     .+++.+.+--++-.+.++.+.           ..+..||+++..-     |.
T Consensus        73 ~W~~lp~~lgdklApLiGA~~~E-----vvv~dtts~nl~k~L~aalr~-----------~~~r~vIv~E~~~fpTdly~  136 (407)
T COG3844          73 DWFDLPERLGDKLAPLIGARAGE-----VVVTDTTSINLFKVLAAALRP-----------QEGRRVIVSEGDNFPTDLYI  136 (407)
T ss_pred             chhhchhHHHHHhhhhhcCCCCc-----eEEeCCcchHHHHHHHHHhcc-----------CCCceEEeecCCCCCcchhh
Confidence            34455567888999999998732     555544444343444444332           1245788876432     23


Q ss_pred             HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      .+..++++|..     .+- .+.+++.++++++++++..|.+++.+.-||..-|+.+|..+++++      ++++.-|=|
T Consensus       137 a~g~~~~~~~~-----~~~-~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~------galv~wDLA  204 (407)
T COG3844         137 AEGLADLLGIG-----YDL-EGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQH------GALVGWDLA  204 (407)
T ss_pred             hcchhhhhccc-----ccc-eeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhc------CceEEeehh
Confidence            44455666654     121 257788899999999999999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe-EEEEEeCCCCcccccccccCccCCCCC-----Cc------
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV-GWVVWRTKDDLPDELVFHINYLGSDQP-----TF------  314 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~y~~~~~~-----~~------  314 (369)
                      ++.+..       +.++...++|+-+.++||++++.+|. +.+++.++.. ....+.-..|.++...     .|      
T Consensus       205 HsaGav-------p~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~-e~~~~~lsgW~gha~pf~m~~~y~p~~ga  276 (407)
T COG3844         205 HSAGAV-------PVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHR-ERSWPPLSGWWGHARPFAMEEVYAPGPGA  276 (407)
T ss_pred             cccCCc-------ceeecccCCCeeeeeeceeccCCCCCceeEEeccccc-cccccccccccCCCCcchhhhccCcCccc
Confidence            998877       34555669999999999999876654 7777765432 2333444567665421     01      


Q ss_pred             --cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          315 --TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       315 --~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                        .+.++.+......+..+|..++.-++.++  +...++.|+.+.++++-.
T Consensus       277 ~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~  327 (407)
T COG3844         277 RRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCE  327 (407)
T ss_pred             cceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc
Confidence              13467777777888889999998899888  999999999999988654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.40  E-value=1.3e-11  Score=118.57  Aligned_cols=259  Identities=12%  Similarity=0.037  Sum_probs=155.3

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++...++|..    ..-.|..+|...+||+.    +++++|.+.       .+.|..|+.++..++.+...+       
T Consensus        55 pS~~m~aAM~~----GDD~Y~gdpSv~~Lee~----vael~G~E~-------alpthqGRgaE~Il~~~~~~~-------  112 (467)
T TIGR02617        55 VTQSMQAAMMR----GDEAYSGSRSYYALAES----VKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKK-------  112 (467)
T ss_pred             CCHHHHHHHHc----CCcccccCchHHHHHHH----HHHHhCCce-------EEECCCCchHHHHHHHhhccc-------
Confidence            44555555443    22235567788888877    788999986       788988899999888876542       


Q ss_pred             cCCCCC--CCeEEecCCCcchH-HHHHhhhcceeEEEecc---------CCccccCHHHHHHHHhh----cCcEEEEeeC
Q 017569          148 QGKPYD--KPNIVTGANVQVCW-EKFARYFEVELKEVKLE---------EGYYVMNPVKAVELVDE----NTICVAAILG  211 (369)
Q Consensus       148 ~g~~~~--~~~Vi~s~~~h~s~-~~~~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~----~~~~v~~~~~  211 (369)
                      +|....  .+..+++...|+-. ...+.+.|+.++.++.+         +..+.+|+++|+++|.+    +..++..+..
T Consensus       113 ~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt  192 (467)
T TIGR02617       113 REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT  192 (467)
T ss_pred             ccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEE
Confidence            111100  01114455555543 34566778887776432         22489999999999985    2233333333


Q ss_pred             CCCc-ccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-------CCccccc--c-CCCCcEEEEcCcc
Q 017569          212 STLT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-------PDLEWDF--R-LPLVKSINVSGHK  277 (369)
Q Consensus       212 ~~~t-G~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-------~~~~~~~--~-~~~~Dsi~~~~hK  277 (369)
                      +|.. |.+   +++.++.++|+++      |+.+|.|||=-+-..-|+.       ....-++  . ...+|++++|..|
T Consensus       193 ~N~~GGqpvslenlr~V~~la~~~------GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsK  266 (467)
T TIGR02617       193 CNSAGGQPVSLANLKAVYEIAKKY------DIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKK  266 (467)
T ss_pred             EecCCCEEeCHHHHHHHHHHHHHc------CCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCC
Confidence            3433 444   6688999999999      9999999973221000011       1100111  1 3689999999999


Q ss_pred             CCCCCCCeEEEEEeCC---CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHH
Q 017569          278 YGLVYAGVGWVVWRTK---DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSF  354 (369)
Q Consensus       278 ~l~~p~g~g~l~~~~~---~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~  354 (369)
                      -+++|.| |+++.+++   +++.+.-..-..|-+.  .++   |..+++..-++...|...-.+.+-. +.+...+||.+
T Consensus       267 glgApvG-g~Lag~d~~~~~l~~~~~~~~i~~EGf--~tY---GGlagrd~ea~a~Gl~e~~~~~yl~-~ri~qv~yl~~  339 (467)
T TIGR02617       267 DAMVPMG-GLLCFKDDSFFDVYTECRTLCVVQEGF--PTY---GGLEGGAMERLAVGLYDGMNLDWLA-YRINQVQYLVN  339 (467)
T ss_pred             CCCCccc-ceEEecchhHHHHHHHHHhhcccccCC--cCc---CchhHHHHHHHHhhhhhcccHHHHH-HHHHHHHHHHH
Confidence            9999998 67878776   3332221111222221  222   4555554444444444443322222 66777889999


Q ss_pred             HHHhcCC
Q 017569          355 FVIHSSY  361 (369)
Q Consensus       355 ~L~~~g~  361 (369)
                      +|.+.|.
T Consensus       340 ~L~~~Gv  346 (467)
T TIGR02617       340 GLEEIGV  346 (467)
T ss_pred             HHHhCCC
Confidence            9998875

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.39  E-value=3.6e-11  Score=110.73  Aligned_cols=264  Identities=11%  Similarity=0.006  Sum_probs=173.7

Q ss_pred             ChHHHHHHHHHHhccC--CCCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe--CCchHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKN--YVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT--VGSSEAIMLAGLAFK  138 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n--~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t--~Ggt~a~~~al~~~~  138 (369)
                      ....|.|++-+.+++.  .+.+     +...-..++|.-+++.--+.||++++    .||+-+  .+|+-||+.+..++.
T Consensus        52 ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~----kWGVNVQp~SGSPANfavYtall  127 (477)
T KOG2467|consen   52 TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPE----KWGVNVQPYSGSPANFAVYTALL  127 (477)
T ss_pred             hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHH----HCceeeccCCCCchhhHHHhhhc
Confidence            4467888888887542  1222     11224678888788888899999973    466433  488999988777765


Q ss_pred             HHHHHHHHhcCCCCCCCeEE---ecCCCcchH--HHHHhhhcce-----eEEEeccCCccccCHHHHHHHHhh-cCcEEE
Q 017569          139 RKWQQKRKEQGKPYDKPNIV---TGANVQVCW--EKFARYFEVE-----LKEVKLEEGYYVMNPVKAVELVDE-NTICVA  207 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi---~s~~~h~s~--~~~~~~~G~~-----v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~  207 (369)
                      .+             .++|.   .|+-.|-+.  ....+-..+.     --...+++.++-||.+.||+.... +|++|+
T Consensus       128 ~P-------------h~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~ii  194 (477)
T KOG2467|consen  128 KP-------------HERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLII  194 (477)
T ss_pred             CC-------------CCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEE
Confidence            53             12332   455555431  1111111111     122345666799999999986544 788776


Q ss_pred             EeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       208 ~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                        .|.+.....-|...+.+||.+.      +.++.+|.|+-.+..  .....+..  .+.+|.++..+||-+-+|.| |+
T Consensus       195 --aG~SaY~R~~DYaR~R~Iad~~------gA~Lm~DMAHISgLV--AA~vipsP--Fey~DiVTTTTHKsLRGPRg-~m  261 (477)
T KOG2467|consen  195 --AGTSAYSRLIDYARFRKIADKV------GAYLMADMAHISGLV--AAGVIPSP--FEYCDIVTTTTHKSLRGPRG-AM  261 (477)
T ss_pred             --eccccchhhccHHHHHHHHHhc------CceeehhhhhHHHHH--hcccCCCc--ccccceeeccccccccCCcc-ee
Confidence              4555555667899999999999      999999998754433  11111222  34799999999999998887 67


Q ss_pred             EEEeCCCCccccc-ccccCccCCC----CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          288 VVWRTKDDLPDEL-VFHINYLGSD----QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       288 l~~~~~~~~~~~~-~~~~~y~~~~----~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++|+.-.....- -....|--..    ..-+.++|.+....+.++..+|+.-....|.+.  +..+||+-|+++|.++|
T Consensus       262 IFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G  341 (477)
T KOG2467|consen  262 IFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG  341 (477)
T ss_pred             EEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7777642221100 0011121100    012457788877789999999999988889888  99999999999999998


Q ss_pred             C
Q 017569          361 Y  361 (369)
Q Consensus       361 ~  361 (369)
                      |
T Consensus       342 y  342 (477)
T KOG2467|consen  342 Y  342 (477)
T ss_pred             c
Confidence            7

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.39  E-value=5.5e-11  Score=116.26  Aligned_cols=258  Identities=11%  Similarity=-0.081  Sum_probs=147.5

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.-......+  .......+.+.++++++.+.       ..++++|++|+..++..++.....+   
T Consensus        48 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-------~~~~~SGs~A~e~al~~~~~~~~~~---  115 (400)
T PTZ00125         48 CHPKILAALINQAQKLTLTSRAF--YNDVLGLAEKYITDLFGYDK-------VLPMNSGAEAGETALKFARKWGYEV---  115 (400)
T ss_pred             CCHHHHHHHHHHHHhcccccccc--cCHHHHHHHHHHHhCCCCCE-------EEEeCCcHHHHHHHHHHHHHHHHhc---
Confidence            46778888887765432211111  12344556666888877653       7899999999999999887532111   


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHhhhcceeE---EEeccCC---ccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCC
Q 017569          148 QGKPYDKPNIVTGA-NVQVCWEKFARYFEVELK---EVKLEEG---YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~~v~---~v~~~~~---~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~  219 (369)
                      .|.+..+..|++.+ ..|-.....+...+-...   ..+..++   -...|+++|++.++ +++++|++..+.+++|.+.
T Consensus       116 ~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~  195 (400)
T PTZ00125        116 KGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIV  195 (400)
T ss_pred             cCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCcc
Confidence            11111234555544 445554444443332110   0011000   00138999999996 5788999988999999987


Q ss_pred             C----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCCC
Q 017569          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKD  294 (369)
Q Consensus       220 ~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~~  294 (369)
                      |    +++|.++|+++      ++++++|++|.++...  .........-...|.++++  |++.++. +.|+++.+++ 
T Consensus       196 ~~~~~l~~l~~l~~~~------~~lli~Dev~~g~g~~--G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~-  264 (400)
T PTZ00125        196 PDDGYLKQVYELCKKY------NVLLIVDEIQTGLGRT--GKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDD-  264 (400)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCcc--chhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHH-
Confidence            6    99999999999      9999999998753210  0000111111135777754  9987764 7898887542 


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      .. ..+.. ..+      ..+..++.  ....+...+|+.+..+++.+ +..++.++++++|+++
T Consensus       265 ~~-~~~~~-~~~------~~t~~~~~--~~~~aa~~~l~~i~~~~~~~-~~~~~~~~l~~~l~~l  318 (400)
T PTZ00125        265 VM-LVIKP-GEH------GSTYGGNP--LACAVAVEALEVLKEEKLAE-NAQRLGEVFRDGLKEL  318 (400)
T ss_pred             HH-hhccC-CCC------CCCCCcCH--HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence            21 11110 000      11111111  12333345566665555433 5556778888888764

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.36  E-value=3.4e-11  Score=117.76  Aligned_cols=247  Identities=10%  Similarity=-0.001  Sum_probs=172.6

Q ss_pred             CCCCCC-CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC
Q 017569           83 NYVDMD-EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA  161 (369)
Q Consensus        83 n~~~~~-~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~  161 (369)
                      .++.|. ...+..++-.++.+++.++.|.|.      ...--++|..+-+.+++++|.....    .| ...+...++|-
T Consensus       569 HPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~------~s~QPNsGA~GEYaGL~~IRaY~~~----kg-e~hRnvClIPv  637 (1001)
T KOG2040|consen  569 HPFAPVEQAQGYQQLFTELEKDLCEITGFDS------FSLQPNSGAQGEYAGLRVIRAYLES----KG-EGHRNVCLIPV  637 (1001)
T ss_pred             CCCCchHHHhhHHHHHHHHHHHhheeecccc------eeecCCCCcccchhhHHHHHHHHHh----cc-CCcceeEEEee
Confidence            444442 234778888888999999999985      1233346677777777777765332    12 22456889999


Q ss_pred             CCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCC-CHHHHHHHHHHhhhccCC
Q 017569          162 NVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE-DVKLLHDLLTKKNEETGW  237 (369)
Q Consensus       162 ~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~-~l~~I~~l~~~~~~~~~~  237 (369)
                      ..|-.....+.+.|.+|+.|.++.+ +.+|..+|+++.++   +-.++.+++|+|. |..+ .+.+++++.+++      
T Consensus       638 SAHGTNPASA~MagmkvvpV~~~~~-G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHeh------  709 (1001)
T KOG2040|consen  638 SAHGTNPASAAMAGMKVVPVGCDAN-GNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEH------  709 (1001)
T ss_pred             cccCCChhhHHhcCCEEEEeeccCC-CCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhc------
Confidence            9999888889999999999999875 89999999998875   3578899999998 8885 599999999999      


Q ss_pred             CceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-----CCCCeEEEEEeCCCCcccccccccCc--cCCC
Q 017569          238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-----VYAGVGWVVWRTKDDLPDELVFHINY--LGSD  310 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-----~p~g~g~l~~~~~~~~~~~~~~~~~y--~~~~  310 (369)
                      |--+..|||-=.......+|.      ..|+|..-.+.||.++     +++|.|-+.+|.  .+...+...+--  ....
T Consensus       710 GGQVYlDGANMNAqVGlc~pG------d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~--HLapfLP~HpVvs~~~~~  781 (1001)
T KOG2040|consen  710 GGQVYLDGANMNAQVGLCRPG------DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--HLAPFLPSHPVVSPGRPE  781 (1001)
T ss_pred             CCEEEecCCCccceecccCCc------cccccceeecccceeeecCCCCCCCCCccchhh--hccccCCCCCccCCCCCC
Confidence            999999998432222222231      3489999999999954     445667777764  222222221111  0111


Q ss_pred             CCC-c-ccc----CCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          311 QPT-F-TLN----FSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       311 ~~~-~-~l~----~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      +.. . +..    |+-  ......|++++.||..|+...  -.+-||.|++++|+.
T Consensus       782 ~~~~~gsVsaaP~Gsa--~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~  835 (1001)
T KOG2040|consen  782 DTSPVGSVSAAPWGSA--LILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES  835 (1001)
T ss_pred             CCCCccceeccCCCcc--eeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh
Confidence            101 1 111    221  123567999999999999988  788899999999975

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.36  E-value=1.6e-11  Score=115.78  Aligned_cols=230  Identities=14%  Similarity=0.057  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh
Q 017569           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR  172 (369)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~  172 (369)
                      .+|-..+...+-+..|+...    ....+++.+| +++.+++.+++.+ +          ....|++|...|++..+++.
T Consensus        55 ~~ltn~l~~d~~~~~G~~~~----~~~~~vP~atgm~l~l~l~~l~~r-~----------~a~~Viw~ridqkSc~kai~  119 (389)
T PF05889_consen   55 AKLTNSLVLDALRLAGLRSV----KSCFVVPMATGMSLTLCLLALRMR-P----------KAKYVIWPRIDQKSCFKAIE  119 (389)
T ss_dssp             HHHHHHHHHHHHHHTTHTTH----CEEEEESS-HHHHHHHHHHHHHHH-C----------T--EEEEEEEETHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccc----cceEEEecccccHHHHHHHHHhcc-c----------CCceEEEeeccccchHHHHH
Confidence            44555555556677888741    2245665555 6777777877622 1          13589999999999999999


Q ss_pred             hhcceeEEEec--cCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          173 YFEVELKEVKL--EEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       173 ~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      ..|++++.||.  .+|....|.+.+++++++   ++.+.++++.+-..+.. |++++|+++|+++      +++.++.+|
T Consensus       120 ~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~------~IPhlvNnA  193 (389)
T PF05889_consen  120 RAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEY------DIPHLVNNA  193 (389)
T ss_dssp             HTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHH------T--EEEEGT
T ss_pred             hcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHc------CCceEEccc
Confidence            99999999996  345577889999999875   45677788887777876 6699999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQII  326 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l  326 (369)
                      ||..... .......-.+..++|.++-++.|-+++|.|.+.+...++..+ ..  ....|.+...          ..+.+
T Consensus       194 YgvQ~~~-~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i-~~--vs~~YpGRas----------~sp~l  259 (389)
T PF05889_consen  194 YGVQSSK-CMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGI-LA--VSKEYPGRAS----------ASPSL  259 (389)
T ss_dssp             TTTT-HH-HHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHH-HH--HHHTSHSHBT----------SHHHH
T ss_pred             hhhhHHH-HHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHH-HH--HHHHhhhhhh----------cccch
Confidence            9963221 111111122256899999999999999999888877654332 11  2345554422          22467


Q ss_pred             HHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          327 AQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       327 ~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      -+...|..||..|+...  ...++-.++.++|++
T Consensus       260 d~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~  293 (389)
T PF05889_consen  260 DLFITLLSLGCTGYGALLKERKASFPYLKERLKK  293 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999988  788888888888865

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.33  E-value=5.5e-10  Score=109.31  Aligned_cols=253  Identities=13%  Similarity=-0.031  Sum_probs=148.9

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.-......  .......++.+.+++++|.+.       ..++++|++||..++..++.....+   
T Consensus        54 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~-------~~~~~SGs~A~e~ai~~a~~~~~~~---  121 (401)
T TIGR01885        54 CHPKIVKALTEQAQKLTLSSRA--FYNDVFGEFAEYVTKLFGYDK-------VLPMNTGAEAVETAIKLARKWGYKV---  121 (401)
T ss_pred             CCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHhhcCCCE-------EEEeCccHHHHHHHHHHHHHHhhhh---
Confidence            4678888888776542211111  122333455566888887653       7899999999999999987743211   


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHhhhcc------------eeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeC
Q 017569          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILG  211 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~  211 (369)
                      .|....+.+|+..... |-+...++...|-            ++..+|.      -|+++|++++++   +..+|++...
T Consensus       122 ~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~avi~E~v  195 (401)
T TIGR01885       122 KGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY------NNLEALEEALEDHGPNVCAFIVEPI  195 (401)
T ss_pred             cCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC------CCHHHHHHHHHhcCCCEEEEEEeCc
Confidence            1111123466655555 5444444443221            1222221      168899998863   4567777778


Q ss_pred             CCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeE
Q 017569          212 STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVG  286 (369)
Q Consensus       212 ~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g  286 (369)
                      .+++|.+.|    +++|.++|+++      ++++++|++|.++..  ..........-...|.++++  |.+.++ +..|
T Consensus       196 ~~~~G~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~g~--~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig  265 (401)
T TIGR01885       196 QGEAGVVVPDDGYLKKVRELCTKH------NVLLIADEIQTGLGR--TGKLLCVDHENVKPDIVLLG--KALSGGVYPVS  265 (401)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--cchhhHHhhcCCCCCEEEee--ccccCCCCCcE
Confidence            888898866    99999999999      999999999865321  11000111111246877765  877654 5677


Q ss_pred             EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      +++.++ +.. ..+..  ...     ..+..+.  .....++.++|+.+..+++.+ +..++++++++.|++++
T Consensus       266 ~v~~~~-~i~-~~~~~--~~~-----~~t~~~~--p~~~~aa~a~L~~i~~~~l~~-~~~~~~~~~~~~L~~l~  327 (401)
T TIGR01885       266 AVLADD-DVM-LTIKP--GEH-----GSTYGGN--PLACAVAVAALEVLEEEKLAE-NAEKLGEIFRDQLKKLP  327 (401)
T ss_pred             EEEEcH-HHH-hhccC--CCC-----CCCCCCC--HHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHhcc
Confidence            777642 222 22111  010     1121122  222444556677775544443 77778999999999874

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.29  E-value=4.4e-10  Score=109.05  Aligned_cols=195  Identities=15%  Similarity=-0.015  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++....  ......+++.++.+++.+..+.+       ...++++|++|+..++..++..      
T Consensus        45 ~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~-------~~~~~~sG~~a~~~A~~~a~~~------  109 (377)
T PRK02936         45 HCHPTVTKAVQEQLDDIWHV--SNLFTNSLQEEVASLLAENSAGD-------LVFFCNSGAEANEAALKLARKH------  109 (377)
T ss_pred             CCCHHHHHHHHHHHHhcccc--ccccCCHHHHHHHHHHHhcCCCC-------EEEEeCCcHHHHHHHHHHHHHh------
Confidence            34577888888887653221  12234567778777788776543       2899999999999999977542      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcceeE---EEeccCC-ccc--cCHHHHHHHHhhcCcEEEEeeCCCCcccCC
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEVELK---EVKLEEG-YYV--MNPVKAVELVDENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~~v~---~v~~~~~-~~~--~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (369)
                       .|    +.+|++.+. .|-+....+...|....   ..|..++ ...  -|+++|++.+.+++++|++....++.|...
T Consensus       110 -~g----~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~  184 (377)
T PRK02936        110 -TG----KSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIP  184 (377)
T ss_pred             -cC----CCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCcc
Confidence             11    345666654 45443333333332110   1111110 001  178999999988888999988888877653


Q ss_pred             ----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          220 ----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       220 ----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                          .+++|.++|+++      ++++++|++|.++..  ..........-...|.++  ..|.+++.+..|+++.+
T Consensus       185 ~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~--~g~~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~  250 (377)
T PRK02936        185 ADPAFLQEVQTLCKKF------GALLIIDEVQTGIGR--TGTLFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGK  250 (377)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhhCCCCcEEE--EcccccCCCccEEEEEc
Confidence                399999999999      999999999976322  110000001111245554  67888766678888764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.29  E-value=4.6e-10  Score=106.28  Aligned_cols=245  Identities=12%  Similarity=-0.050  Sum_probs=152.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+-++.-++....+  ..+...++.+.|.++.+ .+       ...++++|+|||-.|+..+|...    
T Consensus        58 H~hP~iv~al~~Q~~kl~h~sn~~--~~~~~~~la~~L~~~s~~~d-------~vff~NSGaEA~EaAiKlARk~~----  124 (404)
T COG4992          58 HCHPALVEALKEQAEKLWHVSNLF--YNEPQAELAEKLVELSPFAD-------RVFFCNSGAEANEAALKLARKYT----  124 (404)
T ss_pred             CCCHHHHHHHHHHHHHhhhccccc--CChHHHHHHHHHHhhCcccc-------EEEEcCCcHHHHHHHHHHHHHHc----
Confidence            456888888887665433222122  12233356667888886 43       38999999999999999998752    


Q ss_pred             HhcCCCCCCCeEEecCCC-cchHHHHHhhh-------cc-----eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          146 KEQGKPYDKPNIVTGANV-QVCWEKFARYF-------EV-----ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~-h~s~~~~~~~~-------G~-----~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                         + +.++.+||.-..+ |--..-++...       +.     +++.+|.+      |+++++++|+++|.+|++---.
T Consensus       125 ---~-~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn------Di~al~~ai~~~taAvivEPIQ  194 (404)
T COG4992         125 ---G-DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN------DIEALEAAIDEDTAAVIVEPIQ  194 (404)
T ss_pred             ---C-CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC------CHHHHHHHhccCeEEEEEeccc
Confidence               1 1223466655444 32211111111       11     24445543      7899999999999999988888


Q ss_pred             CCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          213 TLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       213 ~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      -..|.+-    -++++.++|+++      |+++|.|++|.|.-..  -.-+.+...--..|.++  .-|-+++....|.+
T Consensus       195 GEgGV~~~~~~fl~~lr~lCd~~------g~LLI~DEVQtG~GRT--Gk~fA~e~~gV~PDI~t--laK~LgGG~PigA~  264 (404)
T COG4992         195 GEGGVIPAPPEFLKALRELCDEH------GALLILDEVQTGLGRT--GKLFAYEHYGVEPDILT--LAKALGGGFPIGAM  264 (404)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHh------CeEEEEeccccCCCcc--chHHHHHHhCCCCCEEE--eeccccCCccceee
Confidence            8888773    388999999999      9999999999874331  00001111111357777  67998888999999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH---HHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY---YQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~---~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +.+ +... ..+      ..+.+      ||--+.+++++.   ++|..+..+++-+ +..+...+|.++|+++
T Consensus       265 la~-~~~~-~~~------~~G~H------gSTfGGNpLacAv~~a~l~~l~~e~ll~-~v~~~g~~~~~~L~~l  323 (404)
T COG4992         265 LAT-EEIA-SAF------TPGDH------GSTFGGNPLACAVALAVLEVLLEEGLLE-NVREKGEYLLQRLREL  323 (404)
T ss_pred             EEc-hhhh-hcC------CCCcc------cCCCCcCHHHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHH
Confidence            986 2211 111      11111      222222344443   5566666666655 7788888888888874

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.29  E-value=1.1e-09  Score=106.77  Aligned_cols=251  Identities=10%  Similarity=-0.084  Sum_probs=151.6

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      .|.+.+++.+.++......  .....+.+.++.+++.+..+.+       ...++++|+||+..|+..++....  +   
T Consensus        54 ~p~v~~a~~~q~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~-------~v~f~~SGseA~e~Aik~ar~~~~--~---  119 (395)
T PRK03715         54 NPGMVEALAAQAEKLINPS--PAFYNEPMAKLAGLLTQHSCFD-------KVFFANSGAEANEGAIKLARKWGR--K---  119 (395)
T ss_pred             CHHHHHHHHHHHHhccccc--ccccCHHHHHHHHHHhhccCCC-------EEEEeCCcHHHHHHHHHHHHHHhh--c---
Confidence            5778888887775432221  1233556667777777654433       389999999999999999876321  0   


Q ss_pred             CCCCCCCeEEec-CCCcchHHHHHhhhcceeE---EEeccCCcc----ccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC
Q 017569          149 GKPYDKPNIVTG-ANVQVCWEKFARYFEVELK---EVKLEEGYY----VMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (369)
Q Consensus       149 g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~~v~---~v~~~~~~~----~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (369)
                      + ...+.+|+.. ...|-+...++...|....   ..|.... +    .-|+++|++.+.+++.+|++.......|.+-|
T Consensus       120 ~-~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~  197 (395)
T PRK03715        120 H-KNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPG-FPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPA  197 (395)
T ss_pred             c-CCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCC-ceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccC
Confidence            0 0112455554 4566666655555443211   1111110 1    24789999999878888888887777777766


Q ss_pred             ----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          221 ----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       221 ----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                          +++|.++|+++      ++++++|+++.|+-.  ...-..+. +.+ ..|.+++  .|.++++...|.++.+++ .
T Consensus       198 ~~~~l~~l~~l~~~~------~~llI~DEv~tG~GR--tG~~~a~~~~gv-~PDi~t~--gK~lg~G~p~~av~~~~~-i  265 (395)
T PRK03715        198 TREFMQQLRALTKQH------GLLLIVDEVQTGCGR--TGTLFAYELSGI-EPDIMTL--GKGIGGGVPLAALLAKAE-V  265 (395)
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEeccccCCCC--CcchhhHhhcCC-CCceeee--hhhhhCCcceEEEEEccc-c
Confidence                99999999999      999999999886322  00000011 112 3687775  477766666788877653 2


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      .  .+  ...+.+   .++  .+.  ....++..++|+.+..+++.+ +..++.++|+++|+++
T Consensus       266 ~--~~--~~~~~~---~T~--~g~--pl~~aaala~L~~l~~~~l~~-~~~~~g~~l~~~L~~l  317 (395)
T PRK03715        266 A--VF--EAGDQG---GTY--NGN--PLMTAVGVAVISQLLAPGFLE-GVRARGEYLKEKLLEL  317 (395)
T ss_pred             c--cc--cCCCcC---CCC--CCC--HHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH
Confidence            1  11  111111   111  122  223455557777775544432 8888899999998864

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.28  E-value=9.8e-10  Score=107.40  Aligned_cols=250  Identities=14%  Similarity=-0.037  Sum_probs=146.7

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+++-......+  ......++.+.++++++.+.       ..++++|++|+..|++.++..... +  
T Consensus        52 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~la~~L~~~~~~~~-------~~f~~SGseA~e~Alk~ar~~~~~-~--  119 (397)
T TIGR03246        52 AHPELVKALIEQADKLWHIGNGY--TNEPVLRLAKKLVDATFADK-------VFFCNSGAEANEAALKLARRYALD-K--  119 (397)
T ss_pred             CCHHHHHHHHHHHHhcccccCcc--CCHHHHHHHHHHHhhCCCCE-------EEEeCCcHHHHHHHHHHHHHHHHh-c--
Confidence            46788888888776422111111  12333455666888776542       899999999999999998764321 1  


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          148 QGKPYDKPNIVTGA-NVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .|  ..+.+|+..+ ..|-+...++...|..            +..+|.      .|+++|++++.+++++|++...++.
T Consensus       120 ~~--~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~aavi~Epi~~~  191 (397)
T TIGR03246       120 HG--ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY------NDLAAAKALISDKTCAVIVEPIQGE  191 (397)
T ss_pred             CC--CCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC------CCHHHHHHHhccCeEEEEEecccCC
Confidence            01  1234555544 4565544444433321            112221      2789999999888888888866666


Q ss_pred             cccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          215 TGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       215 tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      .|.+    ..+++|.++|+++      |+++++|++|.++..  ...-... .+.+ ..|.++  ..|.+++.+..|+++
T Consensus       192 ~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tG~Gr--~G~~~a~~~~gv-~pDi~t--~~K~lggG~pigav~  260 (397)
T TIGR03246       192 GGVVPADPAFLKGLRELCDRH------NALLIFDEVQTGVGR--TGELYAYMHYGV-TPDILT--SAKALGGGFPIGAML  260 (397)
T ss_pred             CCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhcCCc--cccchhhhhcCC-CCCEEE--eehhhhCCcceeEEE
Confidence            6644    4599999999999      999999999865422  1000000 1112 467775  467776667788888


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      .++. . .+.+..    ..   ...+..+..  ....+..++|..+..+.+.+ +..++.++|+++|++++
T Consensus       261 ~~~~-i-~~~~~~----~~---~~~t~~~~p--~~~aaa~a~l~~~~~~~l~~-~~~~~~~~l~~~L~~l~  319 (397)
T TIGR03246       261 TTTE-I-AAHLKV----GT---HGTTYGGNP--LACAVAGKVLDLVNTPELLA-GVKQRHDLFVDGLEKIN  319 (397)
T ss_pred             EcHH-H-HHhccC----CC---cCCCCCCCH--HHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHH
Confidence            7542 2 122210    00   011111111  22344445666554433322 77888999999998865

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.25  E-value=3.9e-10  Score=106.23  Aligned_cols=221  Identities=14%  Similarity=0.058  Sum_probs=150.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      .+|+.+.|..+|...+.+.....+..+...  ....++|+|.|.++..+++.+.++             ++.|++-..++
T Consensus        94 lQYg~s~G~peLl~fik~h~~~~ih~p~~~--~wdiiit~G~t~~l~~~l~~~~N~-------------gd~vlie~~ty  158 (472)
T KOG0634|consen   94 LQYGQSSGIPELLLFIKDHNRPTIHAPPYK--NWDIIITNGNTDGLFKVLRTLINR-------------GDHVLIEEYTY  158 (472)
T ss_pred             hccccccCcHHHHHHHHHhccccccCCCCC--CceEEEecCCchHHHHHHHHhhcC-------------CCceEEecccc
Confidence            456677788888877666444344455421  245899999999999999999885             57999999999


Q ss_pred             chHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---------cCcEE-EEeeCCCCcccCCC---HHHHHHHHHHh
Q 017569          165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---------NTICV-AAILGSTLTGEFED---VKLLHDLLTKK  231 (369)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---------~~~~v-~~~~~~~~tG~~~~---l~~I~~l~~~~  231 (369)
                      .+-...++.+|+.++.|+.|.  .-++++.|++.+..         +|.++ .+-.++||||..-.   -++|.++|++|
T Consensus       159 ~~AL~s~~a~gv~~ipv~md~--~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy  236 (472)
T KOG0634|consen  159 PSALQSMEALGVKIIPVKMDQ--DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY  236 (472)
T ss_pred             hHHHHhccccCceEEeccccC--CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc
Confidence            999999999998877777765  47999999998864         24443 36778999999855   45799999999


Q ss_pred             hhccCCCceEEeecccccccccccCC-----Cccc----------------ccc--CCCCcEEEEcCccCCCCCCCeEEE
Q 017569          232 NEETGWDTPIHVDAASGGFIAPFLYP-----DLEW----------------DFR--LPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       232 ~~~~~~~~~l~vD~a~~~~~~~~~~~-----~~~~----------------~~~--~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                            ++.++.|..|....++-..+     ...+                |.+  +.+.||++    |.+..+.+.|++
T Consensus       237 ------DfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFS----KiiaPGlRlG~i  306 (472)
T KOG0634|consen  237 ------DFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFS----KIIAPGLRLGWI  306 (472)
T ss_pred             ------CEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchh----hhhcCcceeEEe
Confidence                  99999999988655431111     0001                111  23344444    888766778888


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF  343 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~  343 (369)
                      ...+ ..+.+-+    ...     ..+.+ +.++..-..+++.|+.+|.+|+.++
T Consensus       307 t~~~-~~l~ril----~~a-----e~~t~-~pSg~sq~iv~a~l~~wgqeG~~~w  350 (472)
T KOG0634|consen  307 TGNS-LFLKRIL----DLA-----EVATS-GPSGFSQGIVYAMLKRWGQEGFLRW  350 (472)
T ss_pred             ecCH-HHHHHHh----hhc-----ceeec-CcccccHHHHHHHHHHHHHHHHHHH
Confidence            7533 1221111    111     11111 1344456778899999999999877

>PLN02624 ornithine-delta-aminotransferase

Probab=99.24  E-value=2.2e-09  Score=107.19  Aligned_cols=253  Identities=11%  Similarity=-0.046  Sum_probs=144.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++.......  .......++.+.++++++.+.       ..++++|+||+..|+..++..+..++ 
T Consensus        91 h~~p~v~~ai~~ql~~~~~~~~~--~~~~~~~~la~~L~~~~~~~~-------~~f~~SGseA~e~AlklAr~~~~~~~-  160 (474)
T PLN02624         91 HCHPKIIKALTEQAEKLTLSSRA--FYNDKFPEFAEYLTSMFGYDM-------VLPMNTGAEGVETAIKLARKWGYEKK-  160 (474)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc--cCCHHHHHHHHHHHhhcCCCe-------EEEeCChHHHHHHHHHHHHHHHHhhc-
Confidence            34688888888887653222111  112233345555777777543       78999999999999998876422211 


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCCccccCHHHHHHHHhh---cCcEEEEee
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAIL  210 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~  210 (369)
                        |.+..+.+|+.... .|-....++...|-            ++..+|.      -|++.|++.++.   ++.+|++..
T Consensus       161 --g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~iaaiiiEp  232 (474)
T PLN02624        161 --GIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF------GDLDALEKIFEEDGDRIAAFLFEP  232 (474)
T ss_pred             --CCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC------CCHHHHHHHHHhCCCCEEEEEECC
Confidence              11111234554433 34332222222110            1222322      167899998863   467889999


Q ss_pred             CCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCe
Q 017569          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGV  285 (369)
Q Consensus       211 ~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~  285 (369)
                      +.+++|.+-|    +++|.++|+++      ++++++|++|.++..  .......+..-...|.++++  |-++++ +..
T Consensus       233 v~~~~G~v~p~~~~L~~l~~lc~~~------gillI~DEv~tG~Gr--tG~~~a~~~~~i~pDiv~ls--K~lggG~~pi  302 (474)
T PLN02624        233 IQGEAGVVIPPDGYLKAVRELCSKH------NVLMIADEIQTGLAR--TGKMLACDWEEVRPDVVILG--KALGGGVIPV  302 (474)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCcCc--CcchhhHHhcCCCCCEEEec--ccccCCCCcc
Confidence            9999998866    99999999999      999999999986321  11101111111246888864  777665 577


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      |+++.++ +.. ..+.  ....     ..|. +.. .....+.-++|+.+..+++.+ +..++.++|++.|+++
T Consensus       303 gav~~~~-~i~-~~~~--~~~~-----~~T~-~g~-pl~~aaa~aaLe~l~~~~l~~-~~~~~~~~l~~~L~~l  364 (474)
T PLN02624        303 SAVLADK-DVM-LCIK--PGEH-----GSTF-GGN-PLASAVAMAALQVVQDEKLAE-RSAKLGQELRDQLQKI  364 (474)
T ss_pred             eeeeecH-HHH-hHhc--cCCc-----CCCC-CCC-HHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHH
Confidence            8887753 222 1111  0000     1111 111 122344445566555444333 6667788888888764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.20  E-value=4.2e-09  Score=103.15  Aligned_cols=251  Identities=11%  Similarity=-0.078  Sum_probs=139.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++.......  .......++.+.++++.+.+.       ..++++|++|+..++..++..... + 
T Consensus        56 h~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~-------~~~~~sGseA~e~a~klar~~~~~-~-  124 (403)
T PRK05093         56 HCHPALVKALKEQGEKLWHISNV--FTNEPALRLAKKLIDATFAER-------VFFANSGAEANEAAFKLARRYACD-R-  124 (403)
T ss_pred             CCCHHHHHHHHHHHHhcCcccCc--cCCHHHHHHHHHHHhhCCCCE-------EEEeCchHHHHHHHHHHHHHHHhh-c-
Confidence            34577888888877642211111  112223355566777765543       899999999999999988764321 0 


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhc-------c-----eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFE-------V-----ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G-------~-----~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                        + ...+..|+. ....|-+...+....|       .     ++..+|.      -|++++++.+.+++++|++. |.+
T Consensus       125 --~-~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~aaiiie-p~~  194 (403)
T PRK05093        125 --H-GPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF------NDLAAVKAVIDDHTCAVVVE-PIQ  194 (403)
T ss_pred             --C-CCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC------CCHHHHHHHhcCCeEEEEEe-ccc
Confidence              0 012344554 4455655443333211       1     1222221      17899999998888888877 666


Q ss_pred             CcccC-----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          214 LTGEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       214 ~tG~~-----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ++|.+     +.+++|.++|+++      ++++++|++|.++..  ..........-...|..+  ..|.+++.+..|++
T Consensus       195 ~~gg~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~s--~sK~l~~G~rig~v  264 (403)
T PRK05093        195 GEGGVIPATPEFLQGLRELCDQH------NALLIFDEVQTGMGR--TGDLFAYMHYGVTPDILT--SAKALGGGFPIGAM  264 (403)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC--CccchhhhhcCCCCCEEE--ecccccCCcceEEE
Confidence            66654     2399999999999      999999999986432  111001111111245444  45888777889999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      +.++. .. +.+..    ..   ...+. +.. .....+...+|+.+..+.+.+ +..++.+++.+.|++++
T Consensus       265 v~~~~-i~-~~l~~----~~---~~~t~-~~~-~~~~~aa~a~L~~~~~~~~~~-~~~~~~~~l~~~L~~~~  324 (403)
T PRK05093        265 LTTAE-IA-SHFKV----GT---HGSTY-GGN-PLACAVAEAVFDIINTPEVLE-GVKARRQRFVDGLQKIN  324 (403)
T ss_pred             EEcHH-HH-hhcCC----CC---CCCCC-CCC-HHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHH
Confidence            87542 21 22110    00   01111 111 111222334444543222221 67778888888888764

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.20  E-value=3.1e-10  Score=105.45  Aligned_cols=160  Identities=13%  Similarity=0.067  Sum_probs=128.4

Q ss_pred             HHHHHHHHhcc---CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           72 CDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        72 v~~~~~~~~~~---n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +.+...+.++.   ..+.|..+.+..-+++.+.+.+.+.=|.+.+.   ..+..|+|++.|+...+..+...        
T Consensus        91 ai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p---~dI~LT~GAS~ai~~il~l~~~~--------  159 (475)
T KOG0258|consen   91 AIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADP---EDIFLTTGASPAIRSILSLLIAG--------  159 (475)
T ss_pred             HHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCH---HHeeecCCCcHHHHHHHHHHhcC--------
Confidence            33433444443   34556677899999999999999998855432   45899999999998877776542        


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh-----cCcEEEEeeCCCCcccC---C
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEF---E  219 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~---~  219 (369)
                          .++-|++|-|-|+-|...+..+|...+..-+|+ .+|.+|.++|++.+++     +++++++..|.||||.+   .
T Consensus       160 ----~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e  235 (475)
T KOG0258|consen  160 ----KKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEE  235 (475)
T ss_pred             ----CCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHH
Confidence                246799999999999998999998877666765 5799999999999876     57888888999999998   6


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      .+++|..+|+++      ++.++.|++|-.-+.
T Consensus       236 ~ie~i~~fa~~~------~l~llaDEVYQ~Nvy  262 (475)
T KOG0258|consen  236 NIEGIICFAAEE------GLVLLADEVYQDNVY  262 (475)
T ss_pred             HHHHHHHHHHHc------CeEEechHHHHhhcc
Confidence            799999999999      999999999876554

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.20  E-value=1.7e-09  Score=106.66  Aligned_cols=192  Identities=13%  Similarity=-0.045  Sum_probs=116.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++........++...+    +++.+++.+...      ....+++||+||+..|++.++...     
T Consensus        64 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~----lae~l~~~~~~~------~~v~~~~sGseA~e~Alk~ar~~~-----  128 (423)
T TIGR00713        64 HAHPRVVEAVKEALERGTSYGAPTEAEIL----LAKEIISRVPSV------EMVRFVNSGTEATMSAVRLARGYT-----  128 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcCCCCCHHHHH----HHHHHHHhCCcc------cEEEEeCCHHHHHHHHHHHHHHhh-----
Confidence            45688888888888764432223334444    444466665432      138999999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHH-HHhhh--cceeEEEeccC--------Cccc---cCHHHHHHHHh---hcCcEEEEe
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEK-FARYF--EVELKEVKLEE--------GYYV---MNPVKAVELVD---ENTICVAAI  209 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~-~~~~~--G~~v~~v~~~~--------~~~~---~d~~~L~~~i~---~~~~~v~~~  209 (369)
                        |    +++|+...++|..+.. .....  |......+..+        +...   -|+++|+++++   +++++|++.
T Consensus       129 --g----r~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~e  202 (423)
T TIGR00713       129 --G----RDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVE  202 (423)
T ss_pred             --C----CCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEe
Confidence              1    4678777766554322 22111  11100001000        0001   17899999997   456777775


Q ss_pred             -eCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccCCCCCC
Q 017569          210 -LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYA  283 (369)
Q Consensus       210 -~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~  283 (369)
                       .+++ +|.+.+    +++|.++|+++      ++++++|++|.++-..   ..... .+.+ ..|.+  ...|.+.+.+
T Consensus       203 p~~~~-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~r~g---~~~~~~~~~~-~pDi~--t~sK~l~~G~  269 (423)
T TIGR00713       203 PVAGN-MGVVPPKPEFLAGLRALTEEY------GSLLIFDEVMTGFRVA---LGGAQEYFGV-EPDLT--TLGKIIGGGL  269 (423)
T ss_pred             CCCCC-CCCcCCCHHHHHHHHHHHHHh------CCEEEEEccccccccC---cchhHHHhCC-Ccchh--hhhhhhcCCC
Confidence             5555 687755    89999999999      9999999999765321   10011 1111 23544  3678887667


Q ss_pred             CeEEEEEeC
Q 017569          284 GVGWVVWRT  292 (369)
Q Consensus       284 g~g~l~~~~  292 (369)
                      ..|+++.++
T Consensus       270 pig~v~~~~  278 (423)
T TIGR00713       270 PVGAFGGRR  278 (423)
T ss_pred             ceeeeeEHH
Confidence            789888754

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.19  E-value=1.3e-09  Score=101.58  Aligned_cols=250  Identities=12%  Similarity=-0.028  Sum_probs=158.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCC-------CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMD-------EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~-------~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ..+|.+.+++.+.++......+       .+.-...||++    |++|-+-+.       ..+.++.=-||-..+..+..
T Consensus       185 s~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~e----LA~LHqK~a-------ALlFsSCfVANDstLftLak  253 (570)
T KOG1360|consen  185 SRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAE----LADLHQKEA-------ALLFSSCFVANDSTLFTLAK  253 (570)
T ss_pred             cCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHH----HHHHhcCcc-------eeeeeeeeeccchHHHHHHH
Confidence            3458899999998876432221       12233455555    899888774       34444555566555555544


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCc
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLT  215 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~t  215 (369)
                      .+           .+-+|+..+--|.|+...++.-++.=....  -+    |+++|+++++.    .|++|........+
T Consensus       254 ~l-----------pgcei~SD~gNHASMI~GIrns~v~K~IFr--HN----D~~hL~~lL~~~~~svPKivAFEtVhSM~  316 (570)
T KOG1360|consen  254 KL-----------PGCEIFSDEGNHASMIQGIRNSRVPKHIFR--HN----DLDHLEQLLQSSPKSVPKIVAFETVHSMD  316 (570)
T ss_pred             HC-----------CCcEEeccccchHHHHHHhhhcCCcceeec--cC----CHHHHHHHHHhCCCCCCceEEEeeeeccC
Confidence            32           123444445568888777776665433222  22    78899998875    47999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      |.+.|+++|++++++|      |....+|+++.-+.+.--. .-...+--+..+|.|+....|.+++-.  |.+. ..+.
T Consensus       317 GavcpleelcDvah~y------GAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG--GYIA-at~~  387 (570)
T KOG1360|consen  317 GAVCPLEELCDVAHKY------GAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG--GYIA-ATRK  387 (570)
T ss_pred             CCcCCHHHHHHHHHHh------CceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc--ceeh-hhhh
Confidence            9999999999999999      9999999987655541000 000011125578999988888875433  3443 3333


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh-cHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-GFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l-g~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      +..-.-+..+.|+...        |-+-.-...+..+.+.+ ..||...+ .++.+.+|++|.|.+.|+
T Consensus       388 LvDmiRSyAaGFIFTT--------SLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~Gi  448 (570)
T KOG1360|consen  388 LVDMIRSYAAGFIFTT--------SLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGI  448 (570)
T ss_pred             HHHHHHHhcCceEEec--------CCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3311111234444332        22222244555777777 66788877 899999999999999885

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.18  E-value=3.4e-09  Score=100.35  Aligned_cols=221  Identities=16%  Similarity=0.107  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHhccCC-CCCCCCcc--hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINKNY-VDMDEYPV--TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~-~~~~~~~~--~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      .+++.+++...++... ..+....+  ..++. .+.+.+..+.|...       +.+++..+.|++..+.++..      
T Consensus        40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~-~~~~~~~~~~~aea-------~~ivnnn~aAVll~~~al~~------  105 (395)
T COG1921          40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLT-ELAELLCGLTGAEA-------AAIVNNNAAAVLLTLNALAE------  105 (395)
T ss_pred             CHHHHHHHHHHhcccceeeeecccchhhHHHH-HHHHHHhcccchhh-------eeeECCcHHHHHHHHhhhcc------
Confidence            4667777776665432 12222111  11221 33333444444443       78888877777666665532      


Q ss_pred             HhcCCCCCCCeEEecC-----CCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC--
Q 017569          146 KEQGKPYDKPNIVTGA-----NVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF--  218 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~-----~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~--  218 (369)
                              +.+|+++-     ..|+.+...+++.|++++++...   .+....+++.+|.+++.++.-++.+|. |..  
T Consensus       106 --------~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~  173 (395)
T COG1921         106 --------GKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---NRTHLKDYELAINENTALLLKVHSSNY-GFTGM  173 (395)
T ss_pred             --------CCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc---CcCCHHHHHHHhccCCeeEEEEeeccc-ccccc
Confidence                    12444321     58899999999999998877653   467889999999999988776666654 433  


Q ss_pred             CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      -++++++++||++      ++++++|.+.|..+-    +++...-. ..|+|.+++|++|.+++|. +|+++.|+ ++. 
T Consensus       174 l~~~~l~~ia~~~------~lpvivD~aSg~~v~----~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkK-elI-  240 (395)
T COG1921         174 LSEEELVEIAHEK------GLPVIVDLASGALVD----KEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKK-ELI-  240 (395)
T ss_pred             ccHHHHHHHHHHc------CCCEEEecCCccccc----cccchhHHHhcCCCEEEEecchhcCCCc-cceEechH-HHH-
Confidence            4788899999999      999999999886432    22111111 4589999999999998888 68777653 443 


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF  337 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~  337 (369)
                      +.++..+-..       .+...+.  ..+++.++|+.+-.
T Consensus       241 ~~lq~~~l~R-------alrv~K~--tla~l~~aLe~y~~  271 (395)
T COG1921         241 EKLQSHPLKR-------ALRVDKE--TLAALEAALELYLQ  271 (395)
T ss_pred             HHHHhhhhhh-------hhhcCcH--hHHHHHHHHHHHcC
Confidence            2222111110       1111221  35777788888754

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.13  E-value=1.1e-08  Score=100.38  Aligned_cols=255  Identities=11%  Similarity=-0.086  Sum_probs=143.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.-......  .......++.+.++++++.+       ...++++|+||+..+++.++..... +  
T Consensus        56 ~~p~v~~A~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~-------~v~~~~sGseA~e~Alk~ar~~~~~-~--  123 (406)
T PRK12381         56 AHPALREALNEQASKFWHTGNG--YTNEPVLRLAKKLIDATFAD-------RVFFCNSGAEANEAALKLARKYAHD-R--  123 (406)
T ss_pred             CCHHHHHHHHHHHhhcccccCc--cCCHHHHHHHHHHHhhCCCC-------eEEEcCCcHHHHHHHHHHHHHHHhh-c--
Confidence            3577888888877642211111  11222334556677776654       3899999999999999998764321 1  


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHhhhcceeE---EEeccCC---ccccCHHHHHHHHhhcCcEEEEeeCCCCcccC--
Q 017569          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEVELK---EVKLEEG---YYVMNPVKAVELVDENTICVAAILGSTLTGEF--  218 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~~v~---~v~~~~~---~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~--  218 (369)
                       + ...+.+|+..+. .|-....++...|....   +.|+.++   -...|+++|++.+++++.+|++. |.+++|.+  
T Consensus       124 -~-~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE-Pv~~~gg~~~  200 (406)
T PRK12381        124 -Y-GSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE-PIQGEGGVIP  200 (406)
T ss_pred             -C-CCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-CCcCCCCCcC
Confidence             1 012345665554 44443333333231100   0111000   01237899999998777777765 77777753  


Q ss_pred             ---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          219 ---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       219 ---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                         +.+++|.++|+++      ++++++|++|.++..  ...-..+ .+.+ ..|.++  ..|.+++.+..|+++.+++ 
T Consensus       201 ~~~~~l~~l~~l~~~~------~~llI~DEv~tG~gr--~G~~~~~~~~~v-~pDi~t--~sK~l~gG~~ig~~~~~~~-  268 (406)
T PRK12381        201 ADKAFLQGLRELCDRH------NALLIFDEVQTGVGR--TGELYAYMHYGV-TPDVLT--TAKALGGGFPIGAMLTTEK-  268 (406)
T ss_pred             CCHHHHHHHHHHHHHc------CCEEEEcchhhCCCC--CcchhhhHhhCC-CCCEEE--ehhhhhCCCceEEEEEcHH-
Confidence               5699999999999      999999999865422  1110011 1111 356554  5688877788899887532 


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      .. ..+..      .. ...+. +.. .....++.++|+.+..+.+.+ +..++.+++++.|++++
T Consensus       269 ~~-~~~~~------~~-~~~t~-~~~-pl~~aaa~a~l~~l~~~~~~~-~~~~~~~~l~~~L~~l~  323 (406)
T PRK12381        269 CA-SVMTV------GT-HGTTY-GGN-PLASAVAGKVLELINTPEMLN-GVKQRHDWFVERLNTIN  323 (406)
T ss_pred             HH-hhcCC------CC-CCCCC-CCC-HHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHH
Confidence            21 22110      00 01111 111 122344445555554333222 77788889999888764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.12  E-value=2e-09  Score=96.97  Aligned_cols=229  Identities=16%  Similarity=0.139  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHhhhhcCCCCccccccccCCChHHH----HHHHHHHhc-----cCCCCCCCCcchHHHHHHHHHHHHHHhC
Q 017569           39 KEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC----DKLVMASIN-----KNYVDMDEYPVTTELQNRCVNMIAHLFN  109 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v----~~~~~~~~~-----~n~~~~~~~~~~~~le~~~~~~la~l~g  109 (369)
                      ..++++++.+-+.-.+  ..+|+++.|...| ++    .+...+.+.     ++..+|+..++-..|.+++..++.+-+|
T Consensus        16 i~~lMdDl~d~Lrt~g--~imLggGNPa~iP-em~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg   92 (417)
T COG3977          16 ITQLMDDLNDGLRTPG--AIMLGGGNPARIP-EMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG   92 (417)
T ss_pred             HHHHHHHHHhhccCCC--ceeeCCCCcccCh-hHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence            4556666655543222  3566776665443 33    333333332     2445667777888999999999999999


Q ss_pred             CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec-CCCcchHHHHHhhhc----ce--eEEEe
Q 017569          110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFARYFE----VE--LKEVK  182 (369)
Q Consensus       110 ~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G----~~--v~~v~  182 (369)
                      ++-..   .++..|+|+..+.++.+-.+.-+.     ..|   ...+|+.| .|.|..|..++-.-.    .+  +..+|
T Consensus        93 wnit~---~NIalTnGSQs~fFYlfNlF~G~~-----sdG---~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~  161 (417)
T COG3977          93 WNITA---QNIALTNGSQSAFFYLFNLFAGRR-----SDG---TEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLP  161 (417)
T ss_pred             CCCcc---ceeeecCCccchHHHHHHHhcCcc-----CCC---cceeEeeccChhhccccccccCccceeeccCCccccc
Confidence            98643   458999999999988777653321     111   12256665 555555443321110    01  11112


Q ss_pred             ccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc
Q 017569          183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL  259 (369)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~  259 (369)
                      -..-.+++|.++|.  +.+.+-+|+++-|+||||.+   +.+.+|.++|+++      ++++++|.|||-..-...-.+.
T Consensus       162 ~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~------giPliIDnAYg~PFP~iifsd~  233 (417)
T COG3977         162 AGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH------GIPLIIDNAYGVPFPGIIFSDA  233 (417)
T ss_pred             ccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc------CCcEEEecccCCCCCceecccc
Confidence            11113688888885  66888999999999999998   4688899999999      9999999999853211000111


Q ss_pred             cccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       260 ~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      ...+.  .=-..+.|..|.+.....||+++..
T Consensus       234 ~~~w~--~NiilC~SLSK~GLPG~R~GIiIan  263 (417)
T COG3977         234 TPLWN--ENIILCMSLSKLGLPGSRCGIIIAN  263 (417)
T ss_pred             cccCC--CCEEEEeehhhcCCCCcceeEEEcc
Confidence            11111  1234577888999888999998864

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.09  E-value=1.6e-08  Score=98.08  Aligned_cols=244  Identities=12%  Similarity=-0.043  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      .|.+.+++.+.+......+  +.....++.+    +++.++...    .....++++|++|+..++..++..       .
T Consensus        46 ~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~----la~~l~~~~----~~~~~~~~SGseA~~~Al~~ar~~-------~  108 (375)
T PRK04260         46 HPQVQQALQKQAGLIWHSP--NLYLNSLQEE----VAQKLIGDK----DYLAFFCNSGAEANEAAIKIARKA-------T  108 (375)
T ss_pred             CHHHHHHHHHHHHhcCccc--CccCCHHHHH----HHHHHhcCc----CCEEEEcCccHHHHHHHHHHHHHh-------c
Confidence            5678888888876543322  2223445555    444332222    123689999999999999998653       1


Q ss_pred             CCCCCCCeEEec-CCCcchHHHHHhhhccee---------EEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC
Q 017569          149 GKPYDKPNIVTG-ANVQVCWEKFARYFEVEL---------KEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (369)
Q Consensus       149 g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~~v---------~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (369)
                          ++.+|++. ...|-+...++...|...         ..++...   ..|++++++.+.+++.+|++..+++++|.+
T Consensus       109 ----~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~  181 (375)
T PRK04260        109 ----GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI---FNDLNSVKALVNKNTAAVMLELVQGESGVL  181 (375)
T ss_pred             ----CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC---CCCHHHHHHhcCCCeEEEEECCeECCCCCc
Confidence                13466665 445655555544333221         1111110   238899999988788889999999999987


Q ss_pred             CC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          219 ED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       219 ~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                      .+    +++|.++|+++      ++++++|++|.++..  ..........-...|.+  +..|.+.+....|+++.++. 
T Consensus       182 ~~~~~~l~~~~~l~~~~------~~~~i~De~~~g~g~--~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~-  250 (375)
T PRK04260        182 PADKDFVKALADYCQET------GILLIVDEVQTGMGR--TGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSS-  250 (375)
T ss_pred             CCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--ccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHH-
Confidence            44    89999999999      999999999976322  11100111111134544  46898865567899988642 


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      .. ..+.    +..   ...+..++  .....++.++|+.+..+++.+ +..+..+++++.|.+
T Consensus       251 ~~-~~~~----~~~---~~~t~~~~--~~~~~aa~a~l~~~~~~~~~~-~~~~~~~~~~~~l~~  303 (375)
T PRK04260        251 LG-GAFG----YGS---HGSTFGGN--KLSMAAASATLDIMLTAGFLE-QALENGNYLQEQLQK  303 (375)
T ss_pred             HH-hhcC----CCC---CCCCCCcC--HHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHH
Confidence            21 2211    100   01111112  222444445565555444433 555556666665544

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.01  E-value=1e-07  Score=95.57  Aligned_cols=267  Identities=15%  Similarity=-0.015  Sum_probs=144.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.............+.+.++.+.|.+++.-..    .....++++|+||+..|++.++..+..   
T Consensus       105 h~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~----~~~v~f~~SGsEA~e~AlKlAr~~~~~---  177 (504)
T PLN02760        105 GSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK----MGKVFFTNSGSEANDTQVKLVWYYNNA---  177 (504)
T ss_pred             CCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC----CCEEEEeCChHHHHHHHHHHHHHHHHh---
Confidence            4468888888888865432211112234445556666777653211    124788999999999999999764321   


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhcce------------eEEEeccCCccc-------------cCHHHHHHHHh
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEVE------------LKEVKLEEGYYV-------------MNPVKAVELVD  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~-------------~d~~~L~~~i~  200 (369)
                       .|... +.+||. ....|-+...++.+.|..            +..++... .++             ...++|++.+.
T Consensus       178 -~g~~~-r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~le~~l~  254 (504)
T PLN02760        178 -LGRPN-KKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH-YWRFHLPGETEEEFSTRLADNLENLIL  254 (504)
T ss_pred             -cCCCC-CcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc-ccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence             12111 345554 445666554444433321            22222211 011             11245777664


Q ss_pred             ----hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEE
Q 017569          201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSI  271 (369)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi  271 (369)
                          ++..+|++.-.....|.+.|    +++|.++|+++      |+++|+|+++.|+-.  ...-..++ +.+ ..|.+
T Consensus       255 ~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~------g~lLI~DEV~TGfGR--tG~~~a~e~~gv-~PDiv  325 (504)
T PLN02760        255 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY------DILFIADEVICAFGR--LGTMFGCDKYNI-KPDLV  325 (504)
T ss_pred             hcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEecchhhCCcc--cchhhHHHhcCC-CCcEE
Confidence                23456666655556677777    99999999999      999999999855422  11111111 112 36776


Q ss_pred             EEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          272 NVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       272 ~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      +  ..|.+++.+ +.|.+++++ +.. +.+.......+......|..|.  ....++..++|+.+..+++.+ +..++.+
T Consensus       326 t--lgK~lggG~~PigAv~~~~-~i~-d~~~~~~~~~~~~~h~~T~~gn--Pl~~Aaala~Le~i~~~~l~~-~~~~~g~  398 (504)
T PLN02760        326 S--LAKALSSAYMPIGAVLVSP-EIS-DVIHSQSNKLGSFAHGFTYSGH--PVSCAVALEALKIYKERNIPE-HVNKIAP  398 (504)
T ss_pred             E--ecccccCCccccceEeecH-HHH-hhhhcccccccCcccCCCCCCC--HHHHHHHHHHHHHHHhCCHHH-HHHHHHH
Confidence            6  578876643 456677653 222 2221110100000001122221  122344446666665554422 8889999


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      +|++.|+++
T Consensus       399 ~l~~~L~~l  407 (504)
T PLN02760        399 RFQDGIKAF  407 (504)
T ss_pred             HHHHHHHHH
Confidence            999999874

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.00  E-value=1.2e-07  Score=92.94  Aligned_cols=259  Identities=10%  Similarity=-0.072  Sum_probs=142.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-.+....  ...+...++.+.|.++.+..      ....++++|+||+..|++.++..+..   
T Consensus        56 h~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~la~~L~~~~~~~------~~v~f~~sGseA~e~AlklAr~~~~~---  124 (408)
T PRK04612         56 HNDPDLVAALTEQAGKLWHTSNV--FYSAPPLKLAEELVTASRFA------EKVFLCNSGTEANEAAIKLVRKWASS---  124 (408)
T ss_pred             CCCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHhhCCCC------CEEEEcCchHHHHHHHHHHHHHHHHh---
Confidence            44677888888877643222111  12233345566677665321      24899999999999999999875321   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcceeEE---EeccCC-c--cccCHHHHHHHHhhcCcEEEEeeCCCCcccCC
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEVELKE---VKLEEG-Y--YVMNPVKAVELVDENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~~v~~---v~~~~~-~--~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (369)
                       .|.+.++.+|+.-.. .|-....++...|-....   -|...+ .  -..|++.+++++.+++...++.-|.+.+|.+.
T Consensus       125 -~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~  203 (408)
T PRK04612        125 -QGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVM  203 (408)
T ss_pred             -hCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCc
Confidence             121112345665444 444333333322211100   011000 0  01278999999876666666677777777552


Q ss_pred             -----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          220 -----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       220 -----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                           -+++|.++|+++      ++++++|++|.++...  ..-......-...|.++  ..|.+++.+..|+++.+++ 
T Consensus       204 ~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr~--G~~~a~~~~~~~pdi~t--~~K~l~~G~piga~~~~~~-  272 (408)
T PRK04612        204 PAAPGFLARVRALCDQH------DALLVLDEIQCGMGRT--GTLFAHWQEQVTPDIVT--LAKALGGGFPIGAMLAGPK-  272 (408)
T ss_pred             CCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC--CchhhhhhcCCCCCEEE--EcchhcCCCceEEEEECHH-
Confidence                 289999999999      9999999999864321  00000000011345555  4688776677888887532 


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      .. +.+.. .   .   ...+..+.  .....+..++|+.+..+++.+ +..++.++|+++|+++
T Consensus       273 ~~-~~~~~-~---~---~~~t~~~~--p~~~aaa~a~L~~~~~~~l~~-~~~~~g~~l~~~l~~l  326 (408)
T PRK04612        273 VA-ETMQF-G---A---HGTTFGGN--PLAAAVARVALRKLASPQIAA-NVARQSAALRAGLEAL  326 (408)
T ss_pred             HH-hhhcC-C---C---cCCCCCCC--HHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH
Confidence            21 22111 0   0   11121122  222344445666665444322 7888888888888764

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.98  E-value=4.2e-08  Score=96.80  Aligned_cols=245  Identities=14%  Similarity=-0.004  Sum_probs=139.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.....+.    ....+.++++++.+++.- .     ....++++|+||+..++..++...     
T Consensus        66 h~~p~i~~a~~~~~~~~~~~~~----~~~~~~~la~~L~~~~~~-~-----~~v~~~~sGseA~e~Aik~a~~~~-----  130 (426)
T PRK00062         66 HAHPEVVEAVIEAAEKGLSFGA----PTELEVELAELVIELVPS-I-----EMVRMVNSGTEATMSAIRLARGYT-----  130 (426)
T ss_pred             CCCHHHHHHHHHHHHhCCcCCC----CCHHHHHHHHHHHHhCCC-C-----CEEEEecCHHHHHHHHHHHHHHHh-----
Confidence            3457788888888765322111    223444666677776531 1     137899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHH-hhhc-------ce-----eEE-----EeccCCccccCHHHHHHHHhh---cCcE
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFA-RYFE-------VE-----LKE-----VKLEEGYYVMNPVKAVELVDE---NTIC  205 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~-~~~G-------~~-----v~~-----v~~~~~~~~~d~~~L~~~i~~---~~~~  205 (369)
                        |    +.+|+..+.+|......+ ...|       ..     .+.     +.+.    .-|++++++.+.+   ++.+
T Consensus       131 --g----~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~aa  200 (426)
T PRK00062        131 --G----RDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP----YNDLEAVEELFEEYGDEIAA  200 (426)
T ss_pred             --C----CCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC----CCCHHHHHHHHHhCCCcEEE
Confidence              1    356776665554433211 1111       00     010     1111    1278999998864   5567


Q ss_pred             EEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccCCC
Q 017569          206 VAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       206 v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~  280 (369)
                      |++......+|.+-|    +++|.++|+++      ++++++|++|.++-.   ....... +.+ ..|.++  ..|.++
T Consensus       201 iivEpv~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~G~r~---g~~~~~~~~~~-~pDi~~--~gK~l~  268 (426)
T PRK00062        201 VIVEPVAGNMGVVPPKPGFLEGLRELCDEH------GALLIFDEVMTGFRV---ALGGAQGYYGV-TPDLTT--LGKIIG  268 (426)
T ss_pred             EEEeCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeechhcccc---CCccHHHHhCC-CcchHh--hhhHhh
Confidence            777755666788877    99999999999      999999999986522   1100011 111 235433  568877


Q ss_pred             CCCCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +.+..|+++.++ +.. ..+... ..+...     |..+.  .....+..++|+.+..+.+.+ +..++.++++++|++
T Consensus       269 ~G~p~ga~~~~~-~i~-~~~~~~~~~~~~~-----T~~~~--p~~~aaa~a~L~~~~~~~~~~-~~~~~~~~~~~~l~~  337 (426)
T PRK00062        269 GGLPVGAFGGRR-EIM-EQLAPLGPVYQAG-----TLSGN--PLAMAAGLATLKLLKEPGFYE-ELEALTKRLAEGLKE  337 (426)
T ss_pred             CCCcceeeeEHH-HHH-HhhccCCCceecc-----cCcCC--HHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHH
Confidence            667678776643 222 222110 011110     11111  122344446666665442222 777788888888874

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.98  E-value=1.6e-07  Score=92.59  Aligned_cols=266  Identities=8%  Similarity=-0.082  Sum_probs=142.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-..... .....+.+.++.+.+.+++....     ....++++|+||+..|++.+|..+..+  
T Consensus        58 h~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseA~e~A~klar~~~~~~--  129 (423)
T PRK05964         58 HNHPYIDQAIREQLDRLDHVIF-AGFTHEPAERLAQRLVALTPGGL-----DHVFFSDSGSVAVEVALKMALQYWRNR--  129 (423)
T ss_pred             CCCHHHHHHHHHHHhhCCCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            4458888888888765322111 01123344566777888764221     248999999999999999998753221  


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHhhhc------------ceeEEEeccCC-ccccCHHHHHHHHhh---cCcEEEEe
Q 017569          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEG-YYVMNPVKAVELVDE---NTICVAAI  209 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~-~~~~d~~~L~~~i~~---~~~~v~~~  209 (369)
                        |. ..+.+|+.-..+ |-....++...+            ..+..++...+ ....++++|++.+.+   +..+|++.
T Consensus       130 --~~-~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~E  206 (423)
T PRK05964        130 --GE-PGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVE  206 (423)
T ss_pred             --CC-CCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence              11 123466654444 432222222111            12334444321 112337888888863   33455554


Q ss_pred             e-CCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-C
Q 017569          210 L-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-A  283 (369)
Q Consensus       210 ~-~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~  283 (369)
                      - .....|..-    .+++|.++|+++      ++++++|+++.++...  ..-..+...-...|.+++  .|+++++ .
T Consensus       207 p~i~~~gG~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr~--G~~~a~~~~~v~pDi~~~--~K~l~gG~~  276 (423)
T PRK05964        207 PLVQGAGGMLFYDPRYLAELRRICDRH------GVLLIFDEIATGFGRT--GTLFACEQAGVSPDIMCL--SKGLTGGYL  276 (423)
T ss_pred             cccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcC--cchhHHHhcCCCCCeeee--ehhhhcCcc
Confidence            3 255556553    499999999999      9999999998654221  000011111124677665  4998777 5


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +.|+++.++ +.. +.+........... ..|.  +-+....++..++++.+..+++.+ +..++.+++++.|+++
T Consensus       277 p~~av~~~~-~i~-~~~~~~~~~~~~~~-~~T~--~~np~~~aaa~a~l~~l~~~~~~~-~~~~~g~~l~~~l~~l  346 (423)
T PRK05964        277 PLAATLCTA-EIF-EAFYSDDRAKAFMH-SPSY--TANPLACAAANASLDLFEDEPVLE-RVAALSAGLAEGLEPF  346 (423)
T ss_pred             cceEEEEcH-HHH-HhhhcCCccccccc-CCCC--CcCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHhh
Confidence            778877643 222 22211000000000 0011  111222344445566665444322 8888899999999876

>PRK12403 putative aminotransferase; Provisional

Probab=98.98  E-value=8.9e-08  Score=95.27  Aligned_cols=261  Identities=13%  Similarity=0.015  Sum_probs=143.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++............+...++.+.++++++.+.     ....++++|+||+..|++.++..+..   
T Consensus        70 h~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AiklAr~~~~~---  141 (460)
T PRK12403         70 YGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY-----SHAIYTNSGSEANEVLIRTVRRYWQV---  141 (460)
T ss_pred             CCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            3457888888888865332211112233445566667888876332     23899999999999999999875321   


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhcce-----------eEEEeccCCcc----c--------cCHHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEVE-----------LKEVKLEEGYY----V--------MNPVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G~~-----------v~~v~~~~~~~----~--------~d~~~L~~~i~--  200 (369)
                       .|.+ .+.+|+. ....|-+...++..-|..           +..+|... .+    .        .+.++|++.+.  
T Consensus       142 -~g~~-~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~le~~~~~~  218 (460)
T PRK12403        142 -LGKP-QKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPY-WYANGGELTPAEFGRRAALQLEEKILEL  218 (460)
T ss_pred             -hCCC-CCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCc-ccccccCCChHHHHHHHHHHHHHHHHHh
Confidence             1211 1233443 344566555444443322           23333110 00    0        12355666653  


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEE
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV  273 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~  273 (369)
                        ++..+|++.......|.+.|    +++|.++|+++      ++++++|++++++-.  ...-..++ +.+ ..|.++ 
T Consensus       219 ~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~------g~lLI~DEV~tGfGR--tG~~~a~e~~gv-~PDiv~-  288 (460)
T PRK12403        219 GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY------DVLLCADEVIGGFGR--TGEWFAHEHFGF-EPDTLS-  288 (460)
T ss_pred             CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhhhhhcCC-CCCeEE-
Confidence              23456666665556677766    99999999999      999999999976422  00000111 112 257777 


Q ss_pred             cCccCCCCCC-CeEEEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhh-HHHH
Q 017569          274 SGHKYGLVYA-GVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCV-DHKK  350 (369)
Q Consensus       274 ~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~-~~a~  350 (369)
                       ..|.+++.+ ..|.++++++ .. +.+.... .|.-    ..|..+  +....++..++|+.+..+++.+ +.. ++.+
T Consensus       289 -~gK~lggG~~Piga~v~~~~-i~-~~~~~~~~~~~~----~~T~~g--nPl~~Aaala~L~~i~~~~l~~-~~~~~~g~  358 (460)
T PRK12403        289 -IAKGLTSGYVPMGGLVLSKR-IA-EALVEQGGVFAH----GLTYSG--HPVAAAVAIANLKALRDEGVVT-RVKDDTGP  358 (460)
T ss_pred             -EcccccccccceEEEEECHH-HH-HHHhcCCCcccc----CCCCCC--CHHHHHHHHHHHHHHHhccHHH-HHHHHHHH
Confidence             578877664 6677777532 21 2221110 1110    011111  1222444556677776655422 664 7888


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       359 ~l~~~L~~  366 (460)
T PRK12403        359 YLQRCLRE  366 (460)
T ss_pred             HHHHHHHH
Confidence            88888865

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=98.97  E-value=2.3e-07  Score=91.83  Aligned_cols=253  Identities=11%  Similarity=-0.086  Sum_probs=143.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++....... ....+.+.++.+.|.++++...     ....++++|+||+..|++.++...     
T Consensus        57 h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~t-----  125 (443)
T PRK08360         57 HNNPRVVKAIKEQTDKLIHYTPI-YGFPVEPLLLAEKLIEIAPGDN-----PKVSFGLSGSDANDGAIKFARAYT-----  125 (443)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCCCCC-----CEEEEcCCHHHHHHHHHHHHHHhc-----
Confidence            44678888888887653322111 1123344466667887765432     248999999999999999987641     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhcc------------eeEEEeccCC---ccc--------cCHHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG---YYV--------MNPVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~---~~~--------~d~~~L~~~i~--  200 (369)
                        |    +.+|+.-. ..|-....+....|.            ++..+|....   .+.        -+++.+++.+.  
T Consensus       126 --g----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (443)
T PRK08360        126 --K----RRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE  199 (443)
T ss_pred             --C----CCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhc
Confidence              1    34555543 334332222222221            2344443210   010        23455666664  


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSIN  272 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~  272 (369)
                         +++.+|++.-..+++|.+.+    +++|.++|+++      ++++++|++|.++..  ....... .+.+ ..|.++
T Consensus       200 ~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~gr--~G~~~a~~~~~~-~pDiit  270 (443)
T PRK08360        200 VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH------GILLVVDEVQSGLGR--TGKWFAIEHFGV-EPDIIT  270 (443)
T ss_pred             cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CccchhhhhcCC-CCCEEE
Confidence               35677877766688897744    99999999999      999999999986432  1110011 1111 346666


Q ss_pred             EcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHH
Q 017569          273 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLS  352 (369)
Q Consensus       273 ~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l  352 (369)
                      +  .|.+++.+..|+++.+.+ .. ..+..    ..   ...+..+..  ....+..++|+.+..+++.+ +..++.++|
T Consensus       271 l--sK~l~~G~pigav~~~~~-i~-~~~~~----~~---~~~T~~~~p--~~~aaa~a~l~~l~~~~l~~-~~~~~g~~l  336 (443)
T PRK08360        271 L--GKPLGGGLPISATIGRAE-IM-DSLPP----LA---HAFTLSGNP--VASAAALAVIEEIEEKNLLK-RAEKLGNYT  336 (443)
T ss_pred             e--cccccCCceeEEEEEcHH-HH-hhhcC----CC---CCCCCCcCH--HHHHHHHHHHHHHHHcCHHH-HHHHHHHHH
Confidence            4  788776677888887532 22 22210    00   011211222  22344456666665554322 777788888


Q ss_pred             HHHHHhc
Q 017569          353 SFFVIHS  359 (369)
Q Consensus       353 ~~~L~~~  359 (369)
                      ++.|+++
T Consensus       337 ~~~L~~l  343 (443)
T PRK08360        337 KKRLEEM  343 (443)
T ss_pred             HHHHHHH
Confidence            8888753

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.97  E-value=1.8e-07  Score=92.59  Aligned_cols=252  Identities=10%  Similarity=-0.078  Sum_probs=141.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-..... .....+.+.++.+.|++++.-..     ....++++|+||+..|++.++..      
T Consensus        59 h~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~~~~~-----~~v~f~~SGseA~e~AlklAr~~------  126 (433)
T PRK08117         59 HRHPKVVQAIKEQADKLMHGPS-GVIYYESILKLAEELAEITPGGL-----DCFFFSNSGAEAIEGALKLAKHV------  126 (433)
T ss_pred             CCCHHHHHHHHHHHHhccCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCcHHHHHHHHHHHHHHh------
Confidence            4467888888888765322211 11123344556666888763211     24788999999999999988763      


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhc-------------ceeEEEeccCCccc------------cCHHHHHHHHh
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFE-------------VELKEVKLEEGYYV------------MNPVKAVELVD  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~------------~d~~~L~~~i~  200 (369)
                       .|    +++|+. ....|-+...++...+             -++..+|.... ++            -|+++|++.++
T Consensus       127 -tg----r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  200 (433)
T PRK08117        127 -TK----RPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYC-DRCPKGEDPEVCFLECLRDLESLFK  200 (433)
T ss_pred             -cC----CCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCcc-ccccccCchhHHHHHHHHHHHHHHH
Confidence             11    345554 4445554433322211             11344444211 11            15667777765


Q ss_pred             h-----cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcE
Q 017569          201 E-----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKS  270 (369)
Q Consensus       201 ~-----~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds  270 (369)
                      .     +..+|++.......|.+.|    +++|.++|++|      ++++++|++|.++..  ....... .+.+ ..|.
T Consensus       201 ~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tG~gr--~G~~~~~~~~gv-~pDi  271 (433)
T PRK08117        201 HQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH------GILLIFDEVQTGFGR--TGEWFAAQTFGV-VPDI  271 (433)
T ss_pred             hccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc------CCEEEEecchhccCc--cccchhHhhcCC-CCCE
Confidence            2     3556776666666677777    99999999999      999999999986422  1100000 1111 2465


Q ss_pred             EEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      +  ...|.+++....|+++.+++ .. ..+.  ..    . ...|..+  +....++..++|+.+..+++.+ +..++.+
T Consensus       272 ~--t~sK~lg~G~pigav~~~~~-i~-~~~~--~~----~-~~~T~~~--np~~~aaa~a~L~~l~~~~l~~-~~~~~g~  337 (433)
T PRK08117        272 M--TIAKGIASGLPLSAVVASKE-LM-EQWP--LG----S-HGTTFGG--NPVACAAALATLEVIKEEKLLD-NANEMGA  337 (433)
T ss_pred             e--ehhhhccCCCcceeEEEcHH-HH-hhcc--CC----C-CCCCCCc--CHHHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence            4  46788876677888887542 22 1211  00    0 0111111  1222344445666664444322 6777788


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      ++++.|+++
T Consensus       338 ~l~~~L~~l  346 (433)
T PRK08117        338 YALERLEVL  346 (433)
T ss_pred             HHHHHHHHH
Confidence            888888764

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.96  E-value=1.3e-07  Score=90.63  Aligned_cols=188  Identities=12%  Similarity=-0.021  Sum_probs=126.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.|.+++.+.+.....    +...+++|-++.+.+.++++.-+      ..-++++||||++.|++.+|...     
T Consensus        69 H~~p~V~~Av~~~l~~G~~----fg~Pte~Ei~~Aell~~~~p~~e------~vrfvnSGTEAtmsAiRlARa~T-----  133 (432)
T COG0001          69 HAHPAVVEAVQEQLERGLS----FGAPTELEVELAELLIERVPSIE------KVRFVNSGTEATMSAIRLARAYT-----  133 (432)
T ss_pred             CCCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHhcCccc------EEEEecchhHHHHHHHHHHHHhh-----
Confidence            4468899999998876632    22345677788888999887732      38899999999999999998752     


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhc-------------ce------eEEEeccCCccccCHHHHHHHHhhc---C
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFE-------------VE------LKEVKLEEGYYVMNPVKAVELVDEN---T  203 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G-------------~~------v~~v~~~~~~~~~d~~~L~~~i~~~---~  203 (369)
                            .+++|+. ....|-.......-.|             +.      ++.+|.+      |++++++++++.   .
T Consensus       134 ------gR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN------D~~al~~~~~~~g~~I  201 (432)
T COG0001         134 ------GRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN------DLEALEEAFEEYGDDI  201 (432)
T ss_pred             ------CCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC------CHHHHHHHHHHcCCcE
Confidence                  2455554 4455554444333222             21      3344433      789999999873   4


Q ss_pred             cEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      .+|++--.-...|.+-|    +++|.++|+++      ++.+|.|++..++=.++-.   ....--...|..+  ..|.+
T Consensus       202 AaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~------G~lLI~DEViTGFR~~~gG---aq~~~gi~PDltt--lGKiI  270 (432)
T COG0001         202 AAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH------GALLIFDEVITGFRVALGG---AQGYYGVEPDLTT--LGKII  270 (432)
T ss_pred             EEEEeccccCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEecchhhcccCCcc---cccccCcCcchhh--hhhhh
Confidence            66776666666687754    88999999999      9999999997764332111   0111111345555  67999


Q ss_pred             CCCCCeEEEEEeC
Q 017569          280 LVYAGVGWVVWRT  292 (369)
Q Consensus       280 ~~p~g~g~l~~~~  292 (369)
                      ++...+|++-.|.
T Consensus       271 GGGlP~ga~gGr~  283 (432)
T COG0001         271 GGGLPIGAFGGRA  283 (432)
T ss_pred             cCCcceeeeccHH
Confidence            9999999887654

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.96  E-value=3e-08  Score=92.41  Aligned_cols=168  Identities=19%  Similarity=0.149  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe---CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEE-ecCCCcchH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGT---VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIV-TGANVQVCW  167 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t---~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi-~s~~~h~s~  167 (369)
                      +-..||+-    +++.||++.       ..+-   .+||.|+..++...+++             +++++ ++..-|-.+
T Consensus        55 GRd~le~i----yA~vfgaE~-------ALVRpq~vSGTHAi~~~Lfg~Lrp-------------GD~ll~~tG~PYDTL  110 (403)
T PF06838_consen   55 GRDKLERI----YADVFGAED-------ALVRPQFVSGTHAIALALFGVLRP-------------GDELLSITGKPYDTL  110 (403)
T ss_dssp             HHHHHHHH----HHHHCT-SE-------EEEETTS-SHHHHHHHHHHHH--T-------------T-EEEESSSS--CCH
T ss_pred             cHHHHHHH----HHHHhCchh-------hhhcccccchHHHHHHHHHhcCCC-------------CCeEEEcCCCchhhH
Confidence            44455544    999999985       3332   37899999999998774             35544 344344455


Q ss_pred             HHHH----------hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCC----CCcccCCCHHHHHHHHHHhhh
Q 017569          168 EKFA----------RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS----TLTGEFEDVKLLHDLLTKKNE  233 (369)
Q Consensus       168 ~~~~----------~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~----~~tG~~~~l~~I~~l~~~~~~  233 (369)
                      ++.+          +-+|+..+.||+.++ +.+|.+.++++++++|++|.+.-..    -++=.+++++++++++|+.+.
T Consensus       111 ~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~d-g~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p  189 (403)
T PF06838_consen  111 EEVIGIRGNGPGSLKEFGIKYREVPLTED-GTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP  189 (403)
T ss_dssp             HHHHTSSSSSSSSTGGGT-EEEE--B-TT-SSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-T
T ss_pred             HHHhCCCCCCCCChHHhCceeEEEeecCC-CCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC
Confidence            5554          334677899999876 8999999999999999999876432    333345778888888887744


Q ss_pred             ccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC--CCeEEEEEeCCCCc
Q 017569          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDL  296 (369)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p--~g~g~l~~~~~~~~  296 (369)
                          ++++.||.|||.++-    ..-+..+   ++|.+.-|.=|..++.  +..|.++- ++++.
T Consensus       190 ----~~iifVDNCYGEFvE----~~EP~~v---GADl~aGSLIKNpGGgiAptGGYIaG-r~~lV  242 (403)
T PF06838_consen  190 ----DVIIFVDNCYGEFVE----TQEPTEV---GADLMAGSLIKNPGGGIAPTGGYIAG-RKDLV  242 (403)
T ss_dssp             ----TSEEEEE-TTTTTTS----SS-GGGG---T-SEEEEETTSGGGTTT-SS-EEEEE-SHHHH
T ss_pred             ----CeEEEEeCCcceecc----ccCcccc---chhheeccceeCCCCCccCcCCEEec-hHHHH
Confidence                899999999998653    2223333   8999999999995443  33356654 44443

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.93  E-value=1.2e-07  Score=91.33  Aligned_cols=189  Identities=15%  Similarity=0.019  Sum_probs=116.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-......++  .+...++.+.++++.+.+.       ..++++|+||+..|++.++..      
T Consensus        40 h~~p~v~~ai~~ql~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~-------v~~~~SGseA~e~Alklar~~------  104 (364)
T PRK04013         40 HNHPEWVEEMSEQLEKLVVAGPMFE--HEEKEEMLEELSKWVNYEY-------VYMGNSGTEAVEAALKFARLY------  104 (364)
T ss_pred             CCCHHHHHHHHHHHHhcCCccCCcC--CHHHHHHHHHHHhhcCCCE-------EEEeCchHHHHHHHHHHHHHH------
Confidence            3457777888877765322111121  2223345555777776553       899999999999999998764      


Q ss_pred             hcCCCCCCCeEEecCCCcch-HHHHHhhh-------cce-----eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          147 EQGKPYDKPNIVTGANVQVC-WEKFARYF-------EVE-----LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s-~~~~~~~~-------G~~-----v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                       .|    +++|+....+|.. ..-++...       +..     +..+|.      .|++++++.+.+++.+|++.....
T Consensus       105 -~g----r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~i~~~~aAvivEpi~g  173 (364)
T PRK04013        105 -TG----RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF------NDVEAAKEAITKETAAVIFEPIQG  173 (364)
T ss_pred             -hC----CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC------CCHHHHHHHhcCCcEEEEEcCCcC
Confidence             11    3567766655433 22222221       111     222221      167889999988888888776665


Q ss_pred             CcccC-CC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          214 LTGEF-ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       214 ~tG~~-~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      ..|.. -|   +++|.++|+++      +++++.|+++.++ .  ......+...-...|.+++  .|.+++....|.++
T Consensus       174 ~gG~~~~~~~yl~~lr~lc~~~------gillI~DEv~tG~-R--tG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~  242 (364)
T PRK04013        174 EGGIVPAKEEFVKTLRDLTEDV------GALLIADEVQSGL-R--TGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTL  242 (364)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhcC-C--CCchhHHHhcCCCCCEEEe--cccccCCceeEEEE
Confidence            55554 34   99999999999      9999999998764 2  1111111111124677774  67776666777777


Q ss_pred             EeC
Q 017569          290 WRT  292 (369)
Q Consensus       290 ~~~  292 (369)
                      .+.
T Consensus       243 ~~~  245 (364)
T PRK04013        243 TNF  245 (364)
T ss_pred             ecc
Confidence            654

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.93  E-value=5.8e-07  Score=87.59  Aligned_cols=253  Identities=10%  Similarity=-0.105  Sum_probs=151.0

Q ss_pred             CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.+..-. ......  ..+-..++.+.|.+++..+.    .....++++|+|||-.|++.+|...    
T Consensus        72 H~hP~Vv~Av~~q~~~~~h~~~~~~--~~e~~v~~ae~L~~~~p~~~----~~~~~f~~sGaeA~E~AiKiAr~~T----  141 (447)
T COG0160          72 HNHPRVVEAVKRQLAKLNHTHTRDL--YYEPYVELAEKLTALAPGSG----LKKVFFGNSGAEAVEAAIKIARAYT----  141 (447)
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcc--cchhHHHHHHHHHHhCCccc----CCeEEecCCcHHHHHHHHHHHHHHh----
Confidence            446888888887655422 111111  11233344555666655431    1348899999999999999998752    


Q ss_pred             HhcCCCCCCCeEE-ecCCCcchHHHHHhhhc-------------ceeEEEeccCC---cc--------ccCHHHHHHHHh
Q 017569          146 KEQGKPYDKPNIV-TGANVQVCWEKFARYFE-------------VELKEVKLEEG---YY--------VMNPVKAVELVD  200 (369)
Q Consensus       146 ~~~g~~~~~~~Vi-~s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~---~~--------~~d~~~L~~~i~  200 (369)
                         |    +..|| +....|-....++.+.|             -.+..+|....   .+        .-..+.++..+.
T Consensus       142 ---g----r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~  214 (447)
T COG0160         142 ---G----RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALF  214 (447)
T ss_pred             ---C----CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHH
Confidence               1    34444 45555655444444432             12667776421   01        112344555443


Q ss_pred             h------cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcE
Q 017569          201 E------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS  270 (369)
Q Consensus       201 ~------~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds  270 (369)
                      .      ++.++++-.-....|.+.|    ++++.++|+++      |+++|+|++|.|+-.  .-.-+.+...-.-.|.
T Consensus       215 ~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~------gillI~DEVQtG~GR--TG~~fa~E~~gv~PDi  286 (447)
T COG0160         215 DLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH------GILLIADEVQTGFGR--TGKMFAFEHFGVEPDI  286 (447)
T ss_pred             hhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cccchhhhhcCCCCCE
Confidence            2      3678888888888888754    89999999999      999999999988654  1111111111114788


Q ss_pred             EEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      +|  ..|-+++....|.++.|.. ... .       ..+.. .+|. +..+. ..++..+.|+.+..+++.+ ++.++-+
T Consensus       287 vt--~aK~ig~G~Pl~avv~r~e-i~~-~-------~~g~~-~~Tf-~GNpv-a~Aaa~AvL~vie~e~L~~-~a~~~G~  351 (447)
T COG0160         287 VT--LAKSLGGGLPLSAVVGRAE-IMD-W-------PPGGH-GGTF-GGNPV-ACAAALAVLDVIEEENLLE-RAAELGE  351 (447)
T ss_pred             EE--ecccccCCCceeEEeccHH-hcc-c-------CCccc-CCCC-CcCHH-HHHHHHHHHHHHHHccHHH-HHHHHHH
Confidence            88  5687777777888887642 221 1       11111 1111 12222 2445557777777776655 8888999


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      ||+++|.++
T Consensus       352 ~l~~~L~~l  360 (447)
T COG0160         352 YLRDRLEEL  360 (447)
T ss_pred             HHHHHHHHH
Confidence            999999763

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.92  E-value=3.4e-07  Score=90.41  Aligned_cols=251  Identities=10%  Similarity=-0.041  Sum_probs=141.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-......  ...+...++.+.|.+++..+.     ....++++|+||+-.|++.+|.....   
T Consensus        91 h~hp~v~~Av~~ql~~l~~~~~~--~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~t~~---  160 (442)
T TIGR03372        91 HRNPNVIAAVENQLAKQPLHSQE--LLDPLRALLAKTLAALTPGKL-----KYSFFCNSGTESVEAALKLAKAYQSP---  160 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccc--cCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHhh---
Confidence            45688888888877643322111  123334456667777764332     23789999999999999998875311   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCCccccCHHHHHHHHhh------cCcEEE
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVDE------NTICVA  207 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~  207 (369)
                       .|    +.+|+.... .|-....+....|-            .+..+|.+      |.+.+++.+++      +..+|+
T Consensus       161 -~g----r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~------d~~~~~~~l~~~~~~~~~vAavI  229 (442)
T TIGR03372       161 -RG----KFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG------DIEAMLKALNECKKTGDDVAAII  229 (442)
T ss_pred             -cC----CcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC------CHHHHHHHHHHHhcCCCcEEEEE
Confidence             11    345665554 44433333322221            12333322      56777777642      356666


Q ss_pred             EeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccCCCCC
Q 017569          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       208 ~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      +......-|.+.|    +++|.++|+++      ++.+++|+++.|+-.  ...-..+. +.+ ..|.++  ..|-+++.
T Consensus       230 vEpv~g~gG~~~p~~~yl~~l~~lc~~~------g~llI~DEV~tG~GR--tG~~~a~e~~gv-~PDivt--~gK~lg~G  298 (442)
T TIGR03372       230 LEPIQGEGGVILPPEGYLPAVRALCDEF------GALLILDEVQTGMGR--TGKMFACEHEGV-QPDILC--LAKALGGG  298 (442)
T ss_pred             EeCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeecccCCCc--cccchhhhhcCC-CCCeee--ehhhhcCC
Confidence            6666666677766    99999999999      999999999865322  00000011 112 367776  57887665


Q ss_pred             -CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          283 -AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       283 -~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                       ...|.++.++ +.. ..+.. ..+.-.  .  |..|..  ...++..++|+.+..+++.+ +..++.++|++.|+++
T Consensus       299 ~~Pigavv~~~-~i~-~~~~~-~~~~~~--~--T~~gnp--~~~Aaa~a~L~~i~~~~l~~-~~~~~G~~l~~~L~~l  366 (442)
T TIGR03372       299 VMPIGATIATE-AVF-SVLFD-NPFLHT--T--TFGGNP--LACAAALATINELLEKNLPA-QAAIKGDFLLDGFQQL  366 (442)
T ss_pred             cccceEEEecH-HHH-Hhhhc-cCcccc--C--CCCCCH--HHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH
Confidence             3567777753 222 22211 111100  1  111211  22344446677776665443 6777788888888764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.92  E-value=1.4e-09  Score=102.08  Aligned_cols=162  Identities=17%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc------chHHHHHh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ------VCWEKFAR  172 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h------~s~~~~~~  172 (369)
                      .+.+.+++++|++.       ..+++.-..|+++++.++..              +.+||+|.-.-      +-+...++
T Consensus        51 ~v~~ll~~ltgAea-------A~VvNnnaAAv~L~l~~la~--------------~~EvIvsRGelVeiGgsFRip~vm~  109 (367)
T PF03841_consen   51 HVEELLCELTGAEA-------ALVVNNNAAAVLLALNTLAK--------------GKEVIVSRGELVEIGGSFRIPDVMR  109 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccc-------cccccccccccccccccccc--------------ccccccccccccccccccccccccc
Confidence            34556889999985       67888877777777666533              13566654322      23556677


Q ss_pred             hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc-----ccCCCHHHHHHHHHHhhhccCCCceEEeeccc
Q 017569          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-----GEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (369)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-----G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~  247 (369)
                      .-|+.+++|-..   .+..+++++++|+++|.++.-.+++|..     +. -++++++++++++      ++++++|.+.
T Consensus       110 ~sGa~lvEVGtt---N~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~-~~~~el~~la~~~------~lp~i~Dlgs  179 (367)
T PF03841_consen  110 QSGARLVEVGTT---NRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGE-VSLEELAELAKEH------GLPVIVDLGS  179 (367)
T ss_dssp             -------------------------------------------------------HHHHHHHHH------T--EEEE-TT
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccc-ccHHHHHHHHhhc------CCcEEEECCC
Confidence            778888777764   2557889999999999998888877773     33 3799999999999      9999999987


Q ss_pred             ccccc--cc-cCCCccc-cccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          248 GGFIA--PF-LYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       248 ~~~~~--~~-~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      |...-  ++ +.+++.. ..-..|+|.+++|+.|.+++|. +|+++.|+
T Consensus       180 G~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk  227 (367)
T PF03841_consen  180 GLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK  227 (367)
T ss_dssp             HHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEH
T ss_pred             CCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH
Confidence            65331  11 1122211 1114589999999999999888 68888764

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=98.92  E-value=3.3e-07  Score=90.90  Aligned_cols=254  Identities=11%  Similarity=-0.084  Sum_probs=136.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-.+ +.......+...++.+.+.+++....    .....++++|+||+..|++.++...     
T Consensus        72 h~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~AlklAr~~t-----  141 (443)
T PRK06058         72 NSAPRVVEAVREQVARFTH-TCFMVTPYEGYVAVAEQLNRLTPGDH----EKRSALFNSGAEAVENAVKIARSYT-----  141 (443)
T ss_pred             CCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCC----CCEEEEeCCcHHHHHHHHHHHHHhh-----
Confidence            4468888888888765321 11111223445567777888765321    0247889999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCCCcc-hHHHHHhhhc--------c-----eeEEEeccCCccc------c--------CHHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQV-CWEKFARYFE--------V-----ELKEVKLEEGYYV------M--------NPVKAVEL  198 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~-s~~~~~~~~G--------~-----~v~~v~~~~~~~~------~--------d~~~L~~~  198 (369)
                        |    +++|+....+|. ....++.+.+        .     .+..+|.... ++      .        ..+.+++.
T Consensus       142 --g----r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  214 (443)
T PRK06058        142 --G----RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYP-YRDPKGLATDGEEAAARAITVIEKQ  214 (443)
T ss_pred             --C----CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcc-cccccccccchHHHHHHHHHHHHHh
Confidence              1    356666554443 3333332211        1     1233332110 11      1        12334444


Q ss_pred             Hh-hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          199 VD-ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       199 i~-~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                      +. +++.+|++.-.....|.+-|    +++|.++|+++      |+++++|+++.|+...  .....+...-...|.+++
T Consensus       215 ~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~------gillI~DEV~tGfgRt--G~~fa~~~~gv~PDiv~~  286 (443)
T PRK06058        215 VGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCREN------GVVFIADEVQTGFART--GAWFACEHEGIVPDLITT  286 (443)
T ss_pred             hCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC--hhhhHHHhcCCCCCEEEE
Confidence            43 34555554443333344433    99999999999      9999999998865321  100001111113588886


Q ss_pred             cCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHH
Q 017569          274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSS  353 (369)
Q Consensus       274 ~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~  353 (369)
                        .|.+++.+..|+++.+++ .. +.+..  .  ..   ..|..+.  ....++..++|+.+..+++.+ +..++.++|+
T Consensus       287 --gK~l~~G~Pi~av~~~~~-i~-~~~~~--~--~~---~~T~~gn--pl~~aaa~a~L~~~~~~~l~~-~~~~~g~~l~  352 (443)
T PRK06058        287 --AKGIAGGLPLSAVTGRAE-IM-DAPHP--G--GL---GGTYGGN--PVACAAALAAIETIEEDDLVA-RARQIEALMT  352 (443)
T ss_pred             --cccccCCCccEEEEEcHH-HH-hhccC--C--CC---CCCCCCC--HHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHH
Confidence              488777788888887642 22 22110  0  00   1111111  112333445555555444333 6777788888


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      ++|+++
T Consensus       353 ~~L~~l  358 (443)
T PRK06058        353 DRLRAL  358 (443)
T ss_pred             HHHHHH
Confidence            888763

>PRK06541 hypothetical protein; Provisional

Probab=98.91  E-value=4e-07  Score=90.60  Aligned_cols=262  Identities=12%  Similarity=-0.018  Sum_probs=142.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+... .....+...++.+.+.+++..+.     ....++++|+||+..|++.++..+..   
T Consensus        68 h~~p~v~~Av~~q~~~~~~~~~-~~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~---  138 (460)
T PRK06541         68 HGRAELAEAAAKQAGTLAFFPL-WSYAHPPAIELAERLAALAPGDL-----NRVFFTTGGSEAVESAWKLAKQYFKL---  138 (460)
T ss_pred             CCCHHHHHHHHHHHhhCcCccc-cccCCHHHHHHHHHHHHhCCCCc-----CEEEEcCCcHHHHHHHHHHHHHHHHh---
Confidence            4457888888888765322111 11122333456666777754322     24899999999999999998875321   


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHhhhcc------------eeEEEeccCC-c---cccC--------HHHHHHHHhh
Q 017569          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFEV------------ELKEVKLEEG-Y---YVMN--------PVKAVELVDE  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~------------~v~~v~~~~~-~---~~~d--------~~~L~~~i~~  201 (369)
                       .|.+ .+.+|+.- ...|-....++...|.            ++..+|.... .   +.-+        ++.+++.+..
T Consensus       139 -~g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  216 (460)
T PRK06541        139 -TGKP-GKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEF  216 (460)
T ss_pred             -cCCC-CccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence             1211 13455543 3344433333322221            1333443210 0   1011        3677887752


Q ss_pred             ---c-CcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEE
Q 017569          202 ---N-TICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSIN  272 (369)
Q Consensus       202 ---~-~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~  272 (369)
                         + ..+|++.-...+.|.+.+    +++|.++|+++      |+++++|+++.++-.  ......+. +.+ ..|.++
T Consensus       217 ~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~------g~llI~DEV~tGfGR--~G~~~a~~~~gv-~PDivt  287 (460)
T PRK06541        217 EGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY------DVLLVSDEVICAFGR--LGEMFGCERFGY-VPDIIT  287 (460)
T ss_pred             cCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--CchhhhhhhcCC-CCCEEE
Confidence               3 344554444777788877    99999999999      999999999954321  11100011 112 367776


Q ss_pred             EcCccCCCCCC-CeEEEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          273 VSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       273 ~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                        ..|.+.+.+ ..|.++.+++ .. ..+.... .+..    ..|..+.  ....++..++|+.+..+++.+ +..++.+
T Consensus       288 --~gK~l~~G~~pigav~~~~~-i~-~~~~~~~~~~~~----~~T~~gn--p~~~aaala~l~~l~~~~~~~-~~~~~g~  356 (460)
T PRK06541        288 --CAKGITSGYSPLGAMIASDR-LF-EPFLDGPTMFLH----GYTFGGH--PVSAAVALANLDIFEREGLLD-HVRDNEP  356 (460)
T ss_pred             --ecccccCCccceeEEEEcHH-HH-HHhhcCCCcccc----CCCCCCC--HHHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence              578877665 6788887643 21 1211111 0100    0111111  122344445566665555433 7888889


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      +|++.|+++
T Consensus       357 ~l~~~L~~l  365 (460)
T PRK06541        357 AFRATLEKL  365 (460)
T ss_pred             HHHHHHHHh
Confidence            999999876

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.90  E-value=3.4e-07  Score=90.98  Aligned_cols=249  Identities=12%  Similarity=-0.040  Sum_probs=143.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-......  ...+...++.+.|.+++..+.     ....++++|+||+-.|++.+|....    
T Consensus        98 H~~p~v~~Ai~~ql~~l~~~~~~--~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~t~----  166 (459)
T PRK11522         98 HRNPVVVSAVQNQLAKQPLHSQE--LLDPLRAMLAKTLAALTPGKL-----KYSFFCNSGTESVEAALKLAKAYQS----  166 (459)
T ss_pred             CCCHHHHHHHHHHHhhCcccccc--cCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCchHHHHHHHHHHHHHhc----
Confidence            44588888888877653222111  123344456666777754322     2478999999999999999887521    


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhh------cCcEEE
Q 017569          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDE------NTICVA  207 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~  207 (369)
                         .. .+.+|+....+ |-....++...|-.            +..+|.      -|.+++++.++.      +..+|+
T Consensus       167 ---~~-gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~~~~iAavI  236 (459)
T PRK11522        167 ---PR-GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF------GNIEAMRTALSECKKTGDDVAAVI  236 (459)
T ss_pred             ---cC-CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC------CCHHHHHHHHHHhhccCCcEEEEE
Confidence               01 13456655544 43332233222211            112221      167888888752      345677


Q ss_pred             EeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c--ccCCCccccccCCCCcEEEEcCccCCC
Q 017569          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P--FLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       208 ~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~--~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +.......|.+.|    ++++.++|+++      |+.+++|+++.|+-. .  |...  .+.  + ..|.++  ..|.++
T Consensus       237 vEpv~g~~G~~~pp~~yl~~lr~lc~~~------g~llI~DEV~tG~GRtG~~~a~e--~~g--v-~PDivt--~gK~lg  303 (459)
T PRK11522        237 LEPIQGEGGVILPPEGYLTAVRKLCDEF------GALLILDEVQTGMGRTGKMFACE--HEN--V-QPDILC--LAKALG  303 (459)
T ss_pred             EecccCCCCCccCCHHHHHHHHHHHHHc------CCEEEeccceecCCccchhhhhh--ccC--C-CCCEEE--echhhh
Confidence            7766666677766    99999999999      999999999865321 0  1111  011  2 357766  478876


Q ss_pred             CC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          281 VY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       281 ~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +. ...|.++.+++ .. ..+... .+.-    ..|..|.  ....++..++|+.+..+++.+ +..++.++|++.|+++
T Consensus       304 gG~~Pigav~~~~~-i~-~~~~~~-~~~~----~~T~~gn--p~~~Aaala~L~~i~~~~l~~-~~~~~g~~l~~~L~~l  373 (459)
T PRK11522        304 GGVMPIGATIATEE-VF-SVLFDN-PFLH----TTTFGGN--PLACAAALATINVLLEQNLPA-QAEQKGDYLLDGFRQL  373 (459)
T ss_pred             CCCccceeEEEcHH-HH-HHhccC-Cccc----CCCCCCC--HHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHH
Confidence            65 35677777642 22 121111 1110    1111121  122455557777776655433 8888899999999875

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=98.90  E-value=7.2e-07  Score=87.65  Aligned_cols=255  Identities=10%  Similarity=-0.036  Sum_probs=138.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.+++...... .....+...++.+.+.+++..+...  .....+ +++|+||+..|++.+|..     
T Consensus        51 h~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~~lae~l~~~~~~~~~~--~~~~~f~~~sGseA~e~AlklAr~~-----  122 (412)
T TIGR02407        51 HNNPKLKQALIDYLADDGIIHS-LDMATEAKREFLETFNEIILKPRGL--DYKVQFPGPTGTNAVESALKLARKV-----  122 (412)
T ss_pred             CCCHHHHHHHHHHHhhccceec-cccCcHHHHHHHHHHHHhccCccCC--CceEEEeCCCchHHHHHHHHHHhhh-----
Confidence            4568888888888764221111 1122344455666677764322100  012445 489999999999999864     


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCC-cc-ccCHHHHHHHHhh------cCc
Q 017569          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG-YY-VMNPVKAVELVDE------NTI  204 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~-~~-~~d~~~L~~~i~~------~~~  204 (369)
                        .|    +++|+.-.. .|-...-++...|            ..+..+|.... .. .-+++.+++.+++      ++.
T Consensus       123 --tg----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a  196 (412)
T TIGR02407       123 --TG----RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPA  196 (412)
T ss_pred             --cC----CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceE
Confidence              12    356665443 4433333332222            12344443210 00 1246778888863      346


Q ss_pred             EEEEeeCCCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|++.-.....|.+    +-+++|.++|+++      +++++.|+++.|+-.  ......++..-...|.++++  |+++
T Consensus       197 avi~Epi~g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tG~GR--tG~~~a~~~~~v~PDi~~~~--K~lg  266 (412)
T TIGR02407       197 AVILETVQGEGGINVASDEWLQRLEKLCRRH------DILLIVDDIQAGCGR--TGTFFSFEPAGIEPDIVCLS--KSIS  266 (412)
T ss_pred             EEEeccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--cchhHHhcccCCCCCEEEec--hhcc
Confidence            67766666666764    3499999999999      999999999875422  00000111111146777754  9987


Q ss_pred             C-CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH-hcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          281 V-YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       281 ~-p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~-lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      + ....|++++++. .  ..+.  ....+   .++  .+.  ....+...+++.. +..+.+.+ +..++.++++++|++
T Consensus       267 ~~G~pigav~~~~~-~--~~~~--~~~~~---~T~--~gn--pl~~aaa~a~l~~~i~~~~l~~-~~~~~g~~l~~~l~~  333 (412)
T TIGR02407       267 GYGLPLALTLIKPE-L--DVWK--PGEHN---GTF--RGN--NLAFVTATAALEYYWSDDAFEK-AVQRKSEIIQERLDR  333 (412)
T ss_pred             CCccceeEEEEchh-h--hccC--CCccC---CCC--Ccc--HHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence            6 677899998653 2  2211  10000   111  111  1122334566664 55444443 566677777777764

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.89  E-value=5.2e-08  Score=91.16  Aligned_cols=292  Identities=11%  Similarity=-0.000  Sum_probs=165.9

Q ss_pred             HHhhhhcCCCC-ccccccccC------CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--CC
Q 017569           47 NDELMLDGNPR-LNLASFVTT------WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVAD--DK  116 (369)
Q Consensus        47 ~~~~~~~~~p~-~~l~~~~~~------~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~--~~  116 (369)
                      .+.+..+..|. .||+.++..      +.-+.|.++=...+++. ...|-.-.|...+.+++.+   =+||.+...  ..
T Consensus        17 ~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~---llFG~d~~~l~~~   93 (396)
T COG1448          17 KEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQK---LLFGADSPALAED   93 (396)
T ss_pred             HHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHH---HhcCCCcHHHHhh
Confidence            34455555555 677654432      11134444433333322 2223333466666666322   246755211  12


Q ss_pred             CCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHH
Q 017569          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKA  195 (369)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L  195 (369)
                      ....+=|.|||.|+..+...+....           .+..|.+|+|+|.-........|++++..|. |..+..+|.+.+
T Consensus        94 Rv~t~Qt~GGTGAL~~~A~fl~~~~-----------~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~m  162 (396)
T COG1448          94 RVATVQTLGGTGALRVAADFLARFF-----------PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGM  162 (396)
T ss_pred             hHhheecCCcchHHHHHHHHHHHhC-----------CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHH
Confidence            2346778899999988777665431           1347999999999999999999999999997 555567999999


Q ss_pred             HHHHhh---cCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCC
Q 017569          196 VELVDE---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLV  268 (369)
Q Consensus       196 ~~~i~~---~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~  268 (369)
                      .+.+..   +..++.-...+||||.-   +.+++|.++.++.      +..-++|-||-|+....-.+-... .+...+.
T Consensus       163 la~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r------~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~  236 (396)
T COG1448         163 LADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER------GLIPFFDIAYQGFADGLEEDAYALRLFAEVGP  236 (396)
T ss_pred             HHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc------CCeeeeehhhhhhccchHHHHHHHHHHHHhCC
Confidence            888875   33444445578999975   5699999999999      999999999987654311111111 0111122


Q ss_pred             -cEEEEcCccCCCC-CCCeEEEE--EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-
Q 017569          269 -KSINVSGHKYGLV-YAGVGWVV--WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-  343 (369)
Q Consensus       269 -Dsi~~~~hK~l~~-p~g~g~l~--~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-  343 (369)
                       -.++.|+.|-++. .-..|.+.  ..+.+.....+.+-..-..+..+++.-.|.+-...++. .-.|+..-.+.+..+ 
T Consensus       237 ~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~-~p~Lra~W~~El~~Mr  315 (396)
T COG1448         237 ELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILN-NPELRAEWEQELEEMR  315 (396)
T ss_pred             cEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence             4566677787532 22334433  33332222111110000111111111001110110111 145566666667777 


Q ss_pred             -HhhHHHHHHHHHHHhc
Q 017569          344 -CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       344 -~~~~~a~~l~~~L~~~  359 (369)
                       |..+|.+.|.+.|++.
T Consensus       316 ~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         316 QRILEMRQALVDALKAL  332 (396)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             9999999999999883

>PRK07482 hypothetical protein; Provisional

Probab=98.89  E-value=5e-07  Score=89.97  Aligned_cols=267  Identities=12%  Similarity=-0.094  Sum_probs=142.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+.........+.+.++.+.|.+++..+.     ....++++|+||+..|++.++..+..   
T Consensus        66 h~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGSEAve~AlKlAr~~~~~---  137 (461)
T PRK07482         66 YGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGM-----SKVYYGLSGSDANETQIKLVWYYNNV---  137 (461)
T ss_pred             CCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh---
Confidence            4468888888888876432111111234445566777887764322     24789999999999999999864321   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCC-cc-----------ccCHHHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG-YY-----------VMNPVKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~-~~-----------~~d~~~L~~~i~-  200 (369)
                       .|.. .+.+|+.-.. .|-...-+....|            -.+..++.... +.           .-++++|++.+. 
T Consensus       138 -~g~~-~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (461)
T PRK07482        138 -LGRP-EKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILA  215 (461)
T ss_pred             -cCCC-CCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHh
Confidence             1211 1356665443 3432221221111            11233332210 00           114677888884 


Q ss_pred             ---hcCcEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          201 ---ENTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                         ++..+|++.-.....|.+-    -+++|.++|+++      |+++|+|+++.|+-.  ......+...-...|.++ 
T Consensus       216 ~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~------giLlI~DEV~tGfGR--tG~~~a~~~~gv~PDiv~-  286 (461)
T PRK07482        216 EGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY------DILLIADEVVTGFGR--LGSMFGSDHYGIEPDLIT-  286 (461)
T ss_pred             cCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CcchhhHHhcCCCCCEEE-
Confidence               2356666665554546552    289999999999      999999999877532  111001111111478888 


Q ss_pred             cCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHH
Q 017569          274 SGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLS  352 (369)
Q Consensus       274 ~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l  352 (369)
                       ..|.+.+.+ +.|.++.+++ .. +.+.......+...-..|..|  +....++..++|+.+..+++.+ +..++.++|
T Consensus       287 -~gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~h~~T~~g--npl~~Aaa~a~L~~~~~~~l~~-~~~~~g~~l  360 (461)
T PRK07482        287 -VAKGLTSAYAPLSGSIVGEK-VW-DVLEQGSDEHGAIGHGWTYSG--HPICAAAALANLDILERENLVG-NAAEVGAYF  360 (461)
T ss_pred             -EccccccCccccceeeecHH-HH-HHHhcccccCCccccCCCCCc--CHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHH
Confidence             478887664 5677777643 21 122111100010000111111  1222344456666676665443 667777888


Q ss_pred             HHHHHh
Q 017569          353 SFFVIH  358 (369)
Q Consensus       353 ~~~L~~  358 (369)
                      .+.|++
T Consensus       361 ~~~L~~  366 (461)
T PRK07482        361 RARLRA  366 (461)
T ss_pred             HHHHHH
Confidence            888764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.89  E-value=3.5e-07  Score=90.32  Aligned_cols=250  Identities=12%  Similarity=-0.032  Sum_probs=141.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++......  .  ..+.+.++.+.+.+++.. .     ....++++|+||+..|++.+|...     
T Consensus        69 h~~p~v~~ai~~q~~~~~~~~--~--~~~~~~~la~~l~~~~p~-~-----~~v~f~~sGseA~e~AlklAr~~t-----  133 (428)
T PRK12389         69 HAHPHITKAITEAAENGVLYG--T--PTELEIEFAKMLKEAIPS-L-----EKVRFVNSGTEAVMTTIRVARAYT-----  133 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCccC--C--CCHHHHHHHHHHHHhCCC-C-----cEEEEeCCHHHHHHHHHHHHHHhh-----
Confidence            445778888888776533211  1  223344566667776541 1     248999999999999999988741     


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHhhhcceeE--------EEe--ccCCcc---ccCHHHHHHHHhh---cCcEEEEe
Q 017569          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFEVELK--------EVK--LEEGYY---VMNPVKAVELVDE---NTICVAAI  209 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~~v~--------~v~--~~~~~~---~~d~~~L~~~i~~---~~~~v~~~  209 (369)
                        |    +.+|+.- ...|-....++...|....        .++  ..++..   .-|++.+++.+++   +..+|++.
T Consensus       134 --g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~E  207 (428)
T PRK12389        134 --G----RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVE  207 (428)
T ss_pred             --C----CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEe
Confidence              2    3455544 3444433333332221100        000  000000   1168899988863   45567766


Q ss_pred             eCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe
Q 017569          210 LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV  285 (369)
Q Consensus       210 ~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~  285 (369)
                      -.....|.+.|    +++|.++|+++      ++++++|+++.++=..+..-  ...+.+ ..|.++  ..|.+++....
T Consensus       208 Pv~g~~G~~~p~~~yl~~l~~lc~~~------g~llI~DEV~tG~Rt~~~~a--~~~~gv-~PDivt--~gK~lggG~Pi  276 (428)
T PRK12389        208 PIVGNFGIVEPKPGFLEAVNELAHEA------GALVIYDEVITAFRFMYGGA--QDLLGV-EPDLTA--LGKIIGGGLPI  276 (428)
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccccccccCcchh--hHHhCC-CCCeee--echhhcCCCce
Confidence            66666687777    99999999999      99999999988751111100  001112 467666  47887766777


Q ss_pred             EEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          286 GWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      |.++.++ +.. +.+.. ...+.++     |..+.  ....++..++|+.+..+++.+ +..++.++|++.|++
T Consensus       277 ~av~~~~-~i~-~~~~~~~~~~~~~-----T~~gn--pl~~Aaala~L~~l~~~~l~~-~~~~~g~~l~~~L~~  340 (428)
T PRK12389        277 GAYGGRK-DIM-EQVAPLGPAYQAG-----TMAGN--PASMAAGIACLEVLQQEGVYE-KLDRLGAMLEEGILE  340 (428)
T ss_pred             eEEeEHH-HHH-hhhccCCCccccc-----CCccC--HHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHH
Confidence            8887653 222 22211 0001111     11111  122344456677776555332 788889999998876

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.88  E-value=9.3e-07  Score=87.55  Aligned_cols=251  Identities=12%  Similarity=-0.095  Sum_probs=138.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.+|.+.+++.+.++...... ......+.+.++.+.|.+++..+.    .....++++|+||+..|++.++..      
T Consensus        70 h~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~~~----~~~v~f~~SGsEA~e~AlklAr~~------  138 (441)
T PRK05769         70 HAHPKVVKAVKEQAEKFLHYS-LTDFYYEPAVELAERLVEIAPGGF----EKKVFFTNSGTESNEAAIKIARYH------  138 (441)
T ss_pred             CCCHHHHHHHHHHHHhccCcc-CcccCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHH------
Confidence            445778888888776432211 111123445566777887764211    124899999999999999998864      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccCCccc-------------cCHHHHHHHH
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGYYV-------------MNPVKAVELV  199 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~-------------~d~~~L~~~i  199 (369)
                       .|    +.+|+.-.. .|-...-++...|.             ++..+|... .++             -+++.+++.+
T Consensus       139 -tg----r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~~  212 (441)
T PRK05769        139 -TG----RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPN-PYRNPWGIENPEECGNAVLDFIEDYL  212 (441)
T ss_pred             -hC----CCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCc-cccccccCCchHHHHHHHHHHHHHHH
Confidence             12    356665443 34333323322211             133444321 011             1234466623


Q ss_pred             -h-----hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCC
Q 017569          200 -D-----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLV  268 (369)
Q Consensus       200 -~-----~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~  268 (369)
                       +     ++..+|++.......|.+.|    +++|.++|+++      ++++++|+++.++...  ..-..+ .+.+ ..
T Consensus       213 ~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~tG~gr~--G~~~a~~~~gv-~p  283 (441)
T PRK05769        213 FKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY------GILLIDDEVQTGMGRT--GKMFAIEHFGV-EP  283 (441)
T ss_pred             HhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--cceehhhccCC-CC
Confidence             2     23556666655566677777    99999999999      9999999998863221  000000 1111 34


Q ss_pred             cEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHH
Q 017569          269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDH  348 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~  348 (369)
                      |.+++  .|.++++++.|+++.++. .. ...   ....     ..|..+ . ....++..++|+.+.. ++.+ +..++
T Consensus       284 Divt~--~K~l~~G~p~gav~~~~~-i~-~~~---~~~~-----~~T~~g-~-p~~~aaa~a~L~~l~~-~~~~-~~~~~  347 (441)
T PRK05769        284 DIITL--AKAIAGGLPLGAVIGRAE-LM-FLP---PGSH-----ANTFGG-N-PVAAAAALATLEELEE-GLLE-NAQKL  347 (441)
T ss_pred             CEEEE--cccccCCcccEEEEEehh-hh-hcC---CCCC-----CCCCCc-C-HHHHHHHHHHHHHHHH-HHHH-HHHHH
Confidence            77775  477666677788877643 22 111   0011     112112 1 1223444466666644 3222 78888


Q ss_pred             HHHHHHHHHhc
Q 017569          349 KKLSSFFVIHS  359 (369)
Q Consensus       349 a~~l~~~L~~~  359 (369)
                      .++|++.|+++
T Consensus       348 g~~l~~~L~~l  358 (441)
T PRK05769        348 GEYLRKELKEL  358 (441)
T ss_pred             HHHHHHHHHHH
Confidence            89999988764

>PLN00144 acetylornithine transaminase

Probab=98.87  E-value=4.8e-07  Score=87.99  Aligned_cols=254  Identities=11%  Similarity=-0.091  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-......  ...+.+.++.+.+.++.+.+       ...++++|+||+..|++.++.....+..
T Consensus        31 h~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~-------~v~f~~sGseA~e~AlklAr~~~~~~~~  101 (382)
T PLN00144         31 HGDPDWVKAVAEQAGTLAHVSNV--YHTIPQVELAKRLVASSFAD-------RVFFCNSGTEANEAAIKFARKYQRVRAP  101 (382)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc--ccCHHHHHHHHHHHhcCCCC-------eEEEeCCcHHHHHHHHHHHHHHHhccCC
Confidence            44578888888877653221111  11233345666677665433       3899999999999999998764221000


Q ss_pred             hcC--CCCCCCeEEecC-CCcchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhh-cCcEEEEee
Q 017569          147 EQG--KPYDKPNIVTGA-NVQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDE-NTICVAAIL  210 (369)
Q Consensus       147 ~~g--~~~~~~~Vi~s~-~~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~  210 (369)
                      ..+  ....+.+|+.-. ..|-...-+....+-.            +..+|.      -|+++|++.+.. ++.+|++.-
T Consensus       102 ~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~~~~~~~aavi~eP  175 (382)
T PLN00144        102 DKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY------GNLEAARKLIQKGKTAAVFVEP  175 (382)
T ss_pred             CCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC------CCHHHHHHhcCCCCeEEEEEcc
Confidence            000  000024555544 4444333333322211            122221      168999988864 456666665


Q ss_pred             CCCCcccC--CC--HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          211 GSTLTGEF--ED--VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       211 ~~~~tG~~--~~--l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      ..++.|..  ++  +++|.++|+++      ++++++|+++.++..  ...-...+..-...|.++  ..|.+.+....|
T Consensus       176 ~q~~gg~~~~~~~~~~~l~~l~~~~------g~llI~DEv~tg~gr--~g~~~~~~~~~~~PDi~t--~sK~l~~G~pig  245 (382)
T PLN00144        176 VQGEGGIYPATKEFLQGLRALCDEA------GALLVFDEVQCGLGR--TGYLWAHEAYGVEPDIMT--LAKPLAGGLPIG  245 (382)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--cchHhhhhhcCCCCCEEE--ecccccCCcceE
Confidence            56664443  34  89999999999      999999999887532  111011111111346444  579887778889


Q ss_pred             EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHH
Q 017569          287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVI  357 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~  357 (369)
                      +++.+++ .. +.+..  ..     ...+.  +-+.....++.++|+.+..+++.+ +..++.+++++.|+
T Consensus       246 ~v~~~~~-~~-~~~~~--~~-----~~~T~--~~~pl~~aaa~a~l~~i~~~~~~~-~~~~~g~~l~~~l~  304 (382)
T PLN00144        246 AVLVTEK-VA-SAINP--GD-----HGSTF--AGGPLVCNAALAVLDKISKPGFLA-SVAKKGEYLRELLR  304 (382)
T ss_pred             EEEEcHH-HH-hccCC--CC-----CCCCC--CCCHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHH
Confidence            9988532 22 22110  00     01111  111222344555667776555544 44444555555444

>PRK06105 aminotransferase; Provisional

Probab=98.87  E-value=6e-07  Score=89.35  Aligned_cols=265  Identities=11%  Similarity=-0.027  Sum_probs=142.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++..+....+....+.+.++.+.|.+++..+.     ....++++|+||+-.|++.++.....   
T Consensus        64 h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseAve~AlKlar~~~~~---  135 (460)
T PRK06105         64 FSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM-----SKVFFTNSGSEANDTVVKLVWYYNNA---  135 (460)
T ss_pred             CCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            4568888888888865332111111223444456677888764332     24789999999999999998754211   


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhcc------------eeEEEeccCCccc-------------cCHHHHHHHHh
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLEEGYYV-------------MNPVKAVELVD  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~-------------~d~~~L~~~i~  200 (369)
                       .|.. .+.+|+. ....|-....+....|.            .+..+|... .++             -..+++++.+.
T Consensus       136 -~g~t-~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~le~~~~  212 (460)
T PRK06105        136 -LGRP-EKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPH-YYRFGLPGESEEAFATRLANELEALIL  212 (460)
T ss_pred             -cCCC-CCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCc-ccccccCCCChHHHHHHHHHHHHHHHH
Confidence             1211 1345555 44445443333222221            122233211 011             12466777774


Q ss_pred             ----hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCCcE
Q 017569          201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKS  270 (369)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Ds  270 (369)
                          ++..+|++---....|.+.+    ++++.++|+++      ++++++|+++.|+-. . ++.-+ ..+  + ..|.
T Consensus       213 ~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~------~~llI~DEv~tG~GRtG~~f~~~-~~~--v-~PDi  282 (460)
T PRK06105        213 AEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY------DILLVADEVICGFGRTGNMFGCE-TFG--I-KPDI  282 (460)
T ss_pred             HcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCeEEEeccccCCCcCchhhhHH-hcC--C-CCCe
Confidence                23456666655555576655    99999999999      999999999855322 1 11111 111  2 3677


Q ss_pred             EEEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHH
Q 017569          271 INVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHK  349 (369)
Q Consensus       271 i~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a  349 (369)
                      ++  ..|.+.+. ...|.++.+++ .. ..+.......+...-..|..+..  ....+..++|..+..+++.+ +..++.
T Consensus       283 ~~--~gK~lggG~~P~~av~~~~~-i~-~~~~~~~~~~~~~~h~~T~~gnp--l~~aaa~a~L~~i~~~~l~~-~v~~~g  355 (460)
T PRK06105        283 LV--MSKQLSSSYQPLSAVLMNEK-VY-DPIADESGKIGTFGHGFTASGHP--VAAAVALENLAIIEERDLVG-NAAERG  355 (460)
T ss_pred             ee--eecccccCcccceEEEEcHH-HH-HHHhcccccCcccccCCCCCCCH--HHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence            76  56887665 25677777542 21 22211110001000011111111  12344445677776554433 888899


Q ss_pred             HHHHHHHHhc
Q 017569          350 KLSSFFVIHS  359 (369)
Q Consensus       350 ~~l~~~L~~~  359 (369)
                      ++|++.|+++
T Consensus       356 ~~l~~~L~~l  365 (460)
T PRK06105        356 ARLQARLRAL  365 (460)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=98.87  E-value=6.5e-07  Score=88.19  Aligned_cols=254  Identities=12%  Similarity=-0.069  Sum_probs=141.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++..... .......+.+.++.+.+.++.....    .....++++|+||+..|++.++..      
T Consensus        56 h~~p~v~~ai~~ql~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~----~~~~~f~~sGseA~e~AlklAr~~------  124 (421)
T PRK09792         56 HRHPDLVAAVEQQLQQFTHT-AYQIVPYESYVTLAEKINALAPVSG----QAKTAFFTTGAEAVENAVKIARAH------  124 (421)
T ss_pred             CCCHHHHHHHHHHHHhccCc-ccCccCCHHHHHHHHHHHHhCCCCC----CceEEEeCChHHHHHHHHHHHHHh------
Confidence            44677888888887653221 1111223334456666777664221    124789999999999999998763      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccCCcccc----CHHHHHHHHh-----hcC
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGYYVM----NPVKAVELVD-----ENT  203 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~----d~~~L~~~i~-----~~~  203 (369)
                       .|    +++|+.-.. .|-....++...|.             .+..+|...+...+    +++.+++.+.     ++.
T Consensus       125 -tg----r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~i  199 (421)
T PRK09792        125 -TG----RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQV  199 (421)
T ss_pred             -cC----CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCce
Confidence             12    356665443 44332222222121             13444442211112    3477888876     245


Q ss_pred             cEEEEeeCCCCcccCC-C---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          204 ICVAAILGSTLTGEFE-D---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~-~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      .+|++.-..+++|... |   +++|.++|+++      ++++++|+++.++..  ......+..--...|.++  ..|.+
T Consensus       200 aavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr--~G~~~a~~~~~~~pDi~t--~gK~l  269 (421)
T PRK09792        200 AAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH------GIVMIADEVQSGFAR--TGKLFAMDHYADKPDLMT--MAKSL  269 (421)
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCC--CCchhHHHhcCCCCcEEE--eehhh
Confidence            6788777788888653 5   99999999999      999999999887532  111011110012456544  57888


Q ss_pred             CCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       280 ~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      .+.+..|+++.+++ .. +.+.  ....     ..|..+..  ...++..++++.+..+.+.+ +..++.+++.+.|++
T Consensus       270 ~~G~pigav~~~~~-i~-~~~~--~~~~-----~~T~~gnp--l~~aaa~a~l~~l~~~~~~~-~~~~~g~~l~~~l~~  336 (421)
T PRK09792        270 AGGMPLSGVVGNAN-IM-DAPA--PGGL-----GGTYAGNP--LAVAAAHAVLNIIDKESLCE-RANQLGQRLKNTLID  336 (421)
T ss_pred             cCCCceEEEEEcHH-HH-hccC--CCCc-----CCCCCCCH--HHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHH
Confidence            77788899887542 21 1111  0000     11111111  11233336666665443322 566778888887765

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.86  E-value=3.9e-07  Score=90.73  Aligned_cols=244  Identities=13%  Similarity=-0.038  Sum_probs=139.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.....  .  ...+.+.++.+.+.+.+.. .     ....++++|+||+..|++.+|..      
T Consensus       115 h~~p~v~~av~~ql~~~~~~--~--~~~~~~~~lAe~l~~~~p~-~-----~~v~f~~SGsEA~e~AlklAR~~------  178 (474)
T PLN02482        115 HADDEVLAALAETMKKGTSF--G--APCLLENVLAEMVIDAVPS-V-----EMVRFVNSGTEACMGVLRLARAY------  178 (474)
T ss_pred             CCCHHHHHHHHHHHhhCCCC--C--CCCHHHHHHHHHHHHhCCC-C-----CEEEEeCChHHHHHHHHHHHHHh------
Confidence            34588888888888654321  1  1234555677778877642 1     24899999999999999999874      


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhh-------------hcce------eEEEeccCCccccCHHHHHHHHhh---cC
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARY-------------FEVE------LKEVKLEEGYYVMNPVKAVELVDE---NT  203 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~-------------~G~~------v~~v~~~~~~~~~d~~~L~~~i~~---~~  203 (369)
                       .|    +++|+.-. ..|-........             -|..      +..+|.      -|+++|++.+.+   +.
T Consensus       179 -tg----r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------nd~~~l~~~l~~~~~~i  247 (474)
T PLN02482        179 -TG----REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY------NDLEAVKKLFEANKGEI  247 (474)
T ss_pred             -cC----CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC------CChHHHHHHHHhCCCce
Confidence             12    45666543 334322111100             0110      111111      178899988864   34


Q ss_pred             cEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccC
Q 017569          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKY  278 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~  278 (369)
                      .+|++.-.....|.+.|    +++|.++|+++      ++++++|+++.|+-..   ..... .+.+ ..|.++  ..|.
T Consensus       248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~------g~lLI~DEV~tGfR~g---~~ga~~~~gv-~PDi~t--~gK~  315 (474)
T PLN02482        248 AAVILEPVVGNSGFIVPKKEFLEGLREITKEN------GALLVFDEVMTGFRIA---YGGAQEYFGI-TPDLTT--LGKV  315 (474)
T ss_pred             EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCeecC---cchHhHHhCC-CCCEEE--ecch
Confidence            56666665566676644    67899999999      9999999998764211   10001 1122 367766  4788


Q ss_pred             CCCCCCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHH
Q 017569          279 GLVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVI  357 (369)
Q Consensus       279 l~~p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~  357 (369)
                      +++....|.++.++ +.. +.+... ..+.+     .|..+..  ...++..++|+.+..+++.+ +..++.++|++.|+
T Consensus       316 lggG~Pigav~g~~-ei~-~~~~~~~~~~~~-----~T~~gnp--l~~aAala~L~~l~~~~~~~-~~~~~g~~l~~~L~  385 (474)
T PLN02482        316 IGGGLPVGAYGGRR-EIM-EMVAPAGPMYQA-----GTLSGNP--LAMTAGIHTLKRLQQPGTYE-YLDKITKKLIQGIL  385 (474)
T ss_pred             hhCCCceEEEEEcH-HHH-HhhccCCCcccc-----cCcchhH--HHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHHH
Confidence            87767788887653 222 222110 00111     1111211  12333456667675544322 77788889988887


Q ss_pred             hc
Q 017569          358 HS  359 (369)
Q Consensus       358 ~~  359 (369)
                      ++
T Consensus       386 ~l  387 (474)
T PLN02482        386 EA  387 (474)
T ss_pred             HH
Confidence            65

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.85  E-value=1.2e-06  Score=86.78  Aligned_cols=266  Identities=11%  Similarity=-0.083  Sum_probs=143.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-.+... +....+.+.++.+.+.+++....     ....++++|+||+-.|++.++.....   
T Consensus        62 h~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~l~~~~p~~~-----~~v~f~~sGseA~e~AlklAr~~~~~---  132 (442)
T PRK13360         62 HGRPEIVEAVRAQAGELDYAPA-FQMGHPKAFELANRIAEIAPGGL-----NHVFFTNSGSESVDTALKIALAYHRA---  132 (442)
T ss_pred             CCCHHHHHHHHHHHHhCCCccc-CCcCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            4467788888887765322111 11123334466677877763221     24789999999999999998874221   


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHhhhc------------ceeEEEeccCC--c--cc--------cCHHHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEG--Y--YV--------MNPVKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G------------~~v~~v~~~~~--~--~~--------~d~~~L~~~i~-  200 (369)
                       .|. ..+.+||.-..+ |-...-++...|            -.+..+|...+  .  +.        -..++|++++. 
T Consensus       133 -~g~-~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  210 (442)
T PRK13360        133 -RGE-GSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTL  210 (442)
T ss_pred             -cCC-CCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHh
Confidence             111 113456654443 432222221111            12334443210  0  10        02467788775 


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCCcEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Dsi  271 (369)
                         ++..+|++.......|.+.|    +++|.++|+++      ++++++|+++.|+-. . +..-+ .+.  + ..|.+
T Consensus       211 ~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~------g~llI~DEv~tG~GrtG~~~a~~-~~g--v-~PDiv  280 (442)
T PRK13360        211 HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH------GILLIFDEVITGFGRLGAPFAAQ-YFG--V-TPDLL  280 (442)
T ss_pred             cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCCCccchhhh-hcC--C-CCcee
Confidence               23556776666666677777    99999999999      999999999854322 1 11101 011  2 35766


Q ss_pred             EEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          272 NVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       272 ~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      +  ..|.+.+. ...|.++++++ .. +.+..............|..+ . ....++..++|+.+..+++.+ +..++.+
T Consensus       281 t--~gK~l~gG~~P~gav~~~~~-i~-~~~~~~~~~~~~~~~~~T~~g-~-pl~~aaa~a~L~~l~~~~l~~-~~~~~g~  353 (442)
T PRK13360        281 T--CAKGLTNGAIPMGAVFVSSE-IH-DAFMQGPEAGIEFFHGYTYSG-H-PLACAAALATLDLYEREGLLT-RAARLAP  353 (442)
T ss_pred             e--eeeccccCccceEEEEEcHH-HH-HHhhcCCccccccccCCCCCC-C-HHHHHHHHHHHHHHHhCCHHH-HHHHHHH
Confidence            6  47877644 34666766542 21 222111100000000112212 2 222455556777776665433 7888889


Q ss_pred             HHHHHHHhcC
Q 017569          351 LSSFFVIHSS  360 (369)
Q Consensus       351 ~l~~~L~~~g  360 (369)
                      +|++.|+++.
T Consensus       354 ~l~~~l~~l~  363 (442)
T PRK13360        354 YWEDALHSLR  363 (442)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.85  E-value=3e-07  Score=90.74  Aligned_cols=199  Identities=10%  Similarity=-0.097  Sum_probs=111.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++....... .....-..++.+++.++.+.+..    ....++++|++|+..|+..++...     
T Consensus        57 h~~~~i~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~~----~~~~f~~sGsea~e~Alklar~~~-----  126 (425)
T PRK08088         57 HLHPKVVAAVEAQLKKLSHTCFQ-VLAYEPYLELCEKMNQKVPGDFA----KKTLLVTTGSEAVENAVKIARAAT-----  126 (425)
T ss_pred             CCCHHHHHHHHHHHhhCCCcccc-ccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCcHHHHHHHHHHHHHHh-----
Confidence            34677888888888653321111 11112233677778887764321    247889999999999999987631     


Q ss_pred             hcCCCCCCCe-EEecCCCcchHHHHHhhhc--------c-----eeEE--EeccCCcccc--CHHHHHHHHh-----hcC
Q 017569          147 EQGKPYDKPN-IVTGANVQVCWEKFARYFE--------V-----ELKE--VKLEEGYYVM--NPVKAVELVD-----ENT  203 (369)
Q Consensus       147 ~~g~~~~~~~-Vi~s~~~h~s~~~~~~~~G--------~-----~v~~--v~~~~~~~~~--d~~~L~~~i~-----~~~  203 (369)
                        |    +.. |.+....|-....+....+        .     ++..  +|.+..+...  ++++|++.++     ++.
T Consensus       127 --~----r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~  200 (425)
T PRK08088        127 --K----RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDI  200 (425)
T ss_pred             --C----CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCce
Confidence              1    233 4444444544333322211        0     0111  2222111111  1566888885     234


Q ss_pred             cEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      .+|++.-.....|.+.+    +++|.++|+++      +++++.|.+|+++...  ..-..++..-...|.  .+..|.+
T Consensus       201 aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~------~~~lI~Dev~~g~g~~--g~~~~~~~~~~~pdi--~s~sK~l  270 (425)
T PRK08088        201 AAIIIEPVQGEGGFYAASPAFMQRLRALCDEH------GIMLIADEVQTGAGRT--GTLFAMEQMGVAADL--TTFAKSI  270 (425)
T ss_pred             EEEEECcccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcC--cchhHHhhcCCCCCE--EEEeccc
Confidence            55555554444455544    99999999999      9999999999864221  100011111112443  3457888


Q ss_pred             CCCCCeEEEEEe
Q 017569          280 LVYAGVGWVVWR  291 (369)
Q Consensus       280 ~~p~g~g~l~~~  291 (369)
                      .+.+..|+++.+
T Consensus       271 ~~G~rig~v~~~  282 (425)
T PRK08088        271 AGGFPLAGVTGR  282 (425)
T ss_pred             cCCCcceeeEec
Confidence            777888999874

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=98.84  E-value=1.3e-06  Score=86.32  Aligned_cols=256  Identities=11%  Similarity=-0.051  Sum_probs=135.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.++........ ........++.+.+.+++..+...  .....+ +++|+||+..|++.+|..     
T Consensus        55 h~~p~v~~ai~~ql~~~~~~~~~-~~~~~~~~~lae~l~~~~~~~~~~--~~~~~f~~~sGseA~e~AlklAr~~-----  126 (425)
T PRK09264         55 HNNPVLKQALIDYLQRDGITHGL-DMHTTAKREFLETFEETILKPRGL--DYKVQFTGPTGTNAVEAALKLARKV-----  126 (425)
T ss_pred             CCCHHHHHHHHHHHHhccccccc-ccCcHHHHHHHHHHHHhhcCCcCC--CceEEEeCCCHHHHHHHHHHHHHHh-----
Confidence            44688888888877642211111 112234445666677765332110  012445 479999999999999764     


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHhhh---------cc---eeEEEeccCC-ccc-cCHHHHHHHHhh------cCc
Q 017569          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYF---------EV---ELKEVKLEEG-YYV-MNPVKAVELVDE------NTI  204 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~---------G~---~v~~v~~~~~-~~~-~d~~~L~~~i~~------~~~  204 (369)
                        .|    +.+|+.-.. .|-...-++...         |.   .+..+|.... ... -|+++|++.+++      +..
T Consensus       127 --tg----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a  200 (425)
T PRK09264        127 --TG----RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPA  200 (425)
T ss_pred             --cC----CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceE
Confidence              12    355665444 343322222221         11   2445554321 001 267888888853      345


Q ss_pred             EEEEeeCCCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|++.-.....|.+    +.+++|.++|+++      |+++++|+++.++..  ......++..-...|.+++  .|.++
T Consensus       201 avi~Epv~g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tG~Gr--tG~~~~~~~~~v~PDi~t~--~K~l~  270 (425)
T PRK09264        201 AVIVETVQGEGGINVASAEWLQRLAKLCRKH------DILLIVDDIQAGCGR--TGTFFSFERAGITPDIVTL--SKSIS  270 (425)
T ss_pred             EEEEecccCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEechhhCCcc--ccHHHHHhhcCCCCCEEEe--ccccC
Confidence            66666555555654    3699999999999      999999999976421  0000001111114577776  48775


Q ss_pred             C-CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHH-HHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          281 V-YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF-IRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       281 ~-p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l-~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      + ....|++++++. . . .+.  ....+   .++  .+.  ....++..+++ ..+..+++.+ +..++.++|+++|++
T Consensus       271 ~~G~pigav~~~~~-i-~-~~~--~~~~~---~T~--~gn--p~~~aaa~a~l~~~~~~~~l~~-~~~~~g~~l~~~l~~  337 (425)
T PRK09264        271 GYGLPMALVLIKPE-L-D-VWK--PGEHN---GTF--RGN--NLAFVTATAALEEYWSDDAFEK-EVKAKGELVRERLEE  337 (425)
T ss_pred             CCccceEEEEEchh-h-h-ccC--CCccC---CCC--CCC--HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHH
Confidence            4 555688888643 2 1 211  10101   111  111  11233344555 3333333333 667777888887765


Q ss_pred             c
Q 017569          359 S  359 (369)
Q Consensus       359 ~  359 (369)
                      +
T Consensus       338 l  338 (425)
T PRK09264        338 I  338 (425)
T ss_pred             H
Confidence            3

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.84  E-value=8.4e-07  Score=87.93  Aligned_cols=264  Identities=12%  Similarity=-0.048  Sum_probs=141.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-.+... .....+...++.+.|.+++..+.     ....++++|+||+..|++.++..+..+  
T Consensus        65 h~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~~--  136 (445)
T PRK09221         65 HGRPEIVEAVARQAATLDYAPA-FQMGHPLAFELAERLAELAPGGL-----DHVFFTNSGSESVDTALKIALAYHRAR--  136 (445)
T ss_pred             CCCHHHHHHHHHHHHhccCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            4457788888887765322211 11122334456677777764321     248899999999999999988753211  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccC--Cc--cc--------cCHHHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEE--GY--YV--------MNPVKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~--~~--~~--------~d~~~L~~~i~-  200 (369)
                        |.+ .+.+|+.-.. .|-...-+....|            .++..+|...  ..  +.        -..+++++.++ 
T Consensus       137 --g~~-~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  213 (445)
T PRK09221        137 --GQG-TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVAL  213 (445)
T ss_pred             --CCC-CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHh
Confidence              111 1345554443 3432222221111            1133343221  00  00        12357777775 


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc---cccCCCccccccCCCCcE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA---PFLYPDLEWDFRLPLVKS  270 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~---~~~~~~~~~~~~~~~~Ds  270 (369)
                         ++..+|++.-.....|.+.|    +++|.++|+++      ++++++|+++.|+-.   .|...  .+.  + ..|.
T Consensus       214 ~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~------g~llI~DEV~tG~GRtG~~~~~~--~~g--v-~PDi  282 (445)
T PRK09221        214 HDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH------GILLIFDEVITGFGRLGAAFAAE--RFG--V-TPDI  282 (445)
T ss_pred             cCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCCcCchhhHHH--hcC--C-CCCE
Confidence               24567777777777788877    99999999999      999999999865321   11111  011  1 2476


Q ss_pred             EEEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHH
Q 017569          271 INVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHK  349 (369)
Q Consensus       271 i~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a  349 (369)
                      ++  ..|.+.+. ...|.++.+++ .. +.+.....+........|..+ .+. ..++..++|+.+..+++.+ +..++.
T Consensus       283 ~~--~gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~~~~T~~~-~pl-~~aaa~a~L~~i~~~~l~~-~~~~~g  355 (445)
T PRK09221        283 IT--FAKGLTNGAIPMGAVIASDE-IY-DAFMQGPEYAIEFFHGYTYSA-HPV-ACAAGLATLDIYREEDLFE-RAAELA  355 (445)
T ss_pred             EE--eccccccCcccceeeEEcHH-HH-HhhccCcccccccccccCCCc-CHH-HHHHHHHHHHHHHhccHHH-HHHHHH
Confidence            66  45666443 23566666532 22 222111111000000112112 222 2333446777776555422 888999


Q ss_pred             HHHHHHHHhc
Q 017569          350 KLSSFFVIHS  359 (369)
Q Consensus       350 ~~l~~~L~~~  359 (369)
                      ++|++.|+++
T Consensus       356 ~~l~~~l~~l  365 (445)
T PRK09221        356 PYFEDAVHSL  365 (445)
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.84  E-value=1.4e-06  Score=83.47  Aligned_cols=259  Identities=13%  Similarity=-0.059  Sum_probs=141.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...... ..........++.++|.++++-..     ....++++|+||+-.|++.++..+..+ .
T Consensus        32 h~~p~i~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~sGseAve~Alkla~~~~~~~-~  104 (339)
T PF00202_consen   32 HNHPEIAEAIAEQANKLNYVS-FSGFTHPEAAELAEKLAELFPGGL-----DRVFFANSGSEAVEAALKLARQYHNKR-A  104 (339)
T ss_dssp             BT-HHHHHHHHHHHHHCSSCS-TTTSEEHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHT-H
T ss_pred             CCccccchhHHHHhhhccccc-ccceeccchhhhhhhhhhcccccc-----ceeeeccCchHHHHHHHHHhhcccccc-c
Confidence            345778888888776543222 112223334467777888883322     348999999999999999998332211 1


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCCcc----ccCHHHHHHHH----hhcCcE
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYY----VMNPVKAVELV----DENTIC  205 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~----~~d~~~L~~~i----~~~~~~  205 (369)
                      ..|    +.+|+.-.. .|-....++...+            -.+..+|......    .-...++++.+    .++..+
T Consensus       105 ~~~----r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaa  180 (339)
T PF00202_consen  105 YTG----RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAA  180 (339)
T ss_dssp             HHT----TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             ccC----CceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEE
Confidence            112    456665544 4432222222111            1356677653100    01122233333    234556


Q ss_pred             EEEeeCCCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC
Q 017569          206 VAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (369)
Q Consensus       206 v~~~~~~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~  281 (369)
                      |++.-.....|.+    +-+++|.++|+++      |+++++|+++.|+..  ...-..+...-...|.++++  |.+.+
T Consensus       181 vivEPi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tG~gR--tG~~~a~~~~gv~PDiv~~g--K~l~g  250 (339)
T PF00202_consen  181 VIVEPIQGEGGMIPPPPEYLRELRELCREH------GILLIADEVQTGFGR--TGKFFASEHYGVDPDIVTFG--KGLGG  250 (339)
T ss_dssp             EEEESSBTTTTSBEE-TTHHHHHHHHHHHT------T-EEEEEETTTTTTT--TSSSSGHHHHTSSSSEEEEE--GGGGT
T ss_pred             EEEeccccccCccccccchhhehccccccc------ccceecccccccccc--cCCccceecccccCcccccc--cchhh
Confidence            6666655555655    2389999999999      999999999887533  11111111112246999975  88777


Q ss_pred             CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ....|.++++++ .. ..+.. .. .+   .++  .+  +....++...+|+.+..+++.+ +..++..+|+++|++
T Consensus       251 G~p~sav~~~~~-i~-~~~~~-~~-~~---~T~--~g--~p~~~aaa~~~l~~~~~~~~~~-~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  251 GLPISAVLGSEE-IM-EAFQP-GS-HG---STF--GG--NPLSCAAALATLEILEEEDLLE-RVRELGERLREGLRE  315 (339)
T ss_dssp             TSSEEEEEEEHH-HH-TTSCT-TS-ST---CTT--TT---HHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHH
T ss_pred             hhhcccccccch-hh-ccccc-cc-cc---ccc--cc--chHhhhhhhhHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence            788899988753 11 11100 00 10   111  11  1123445556666666655444 666667777777764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK05965 hypothetical protein; Provisional

Probab=98.83  E-value=1.7e-06  Score=86.12  Aligned_cols=268  Identities=10%  Similarity=-0.074  Sum_probs=144.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-.+....+....+...++.+.|.+++..+.     ....++++|+||+-.|++.+|..+..   
T Consensus        62 h~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGSEAve~AlKlAr~~~~~---  133 (459)
T PRK05965         62 YGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL-----NHVYFTLGGSDAVDSAVRFIRHYWNA---  133 (459)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCChhHHHHHHHHHHHHHHHh---
Confidence            4468888888888865332211111223334456666777753221     24899999999999999999875421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccC-Cc--cccC--------HHHHHHHHhh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEE-GY--YVMN--------PVKAVELVDE-  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~-~~--~~~d--------~~~L~~~i~~-  201 (369)
                       .|.. .+.+|+.-.. .|-....+....|.            .+..+|... ..  +.-|        ++++++.+.. 
T Consensus       134 -~g~~-~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  211 (459)
T PRK05965        134 -TGRP-SKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL  211 (459)
T ss_pred             -cCCC-CccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence             1211 1345665443 44332222222111            123343321 00  0112        3577777752 


Q ss_pred             ---cCcEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          202 ---NTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       202 ---~~~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                         +..+|++.-.....|.+.    -+++|.++|+++      |+++|+|+++.|+-.  ...-..+...-...|.++  
T Consensus       212 ~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~------gillI~DEV~tGfGR--tG~~~a~~~~gv~PDiv~--  281 (459)
T PRK05965        212 GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL------GILFVADEVITGFGR--TGPLFACEAEGVVPDLMT--  281 (459)
T ss_pred             CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhccCcc--CchhhhHhhcCCCCCeEE--
Confidence               346666665555556553    389999999999      999999999877532  100001111111468888  


Q ss_pred             CccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHH
Q 017569          275 GHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSS  353 (369)
Q Consensus       275 ~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~  353 (369)
                      ..|.+.+.+ ..|.++.+++ .. ..+.......+...-..|..|.. . ..++..++|+.+..+++.+ +..++..+|.
T Consensus       282 ~gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~h~~T~~gnp-l-~~Aaa~a~L~~l~~~~l~~-~~~~~g~~l~  356 (459)
T PRK05965        282 VAKGLTSGYVPMGAVLMSDH-VY-QGIADGAGAAAPVGHGYTYSAHP-V-SAAVGLEVLRLYHEGGLLA-NGQKAGPRFA  356 (459)
T ss_pred             echhhccCCcceeEEEEcHH-HH-HHHhccccccccccccCCCCCCH-H-HHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence            468877774 6788887643 22 12211100000000011111211 1 2344446666676655443 7888889999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|+++
T Consensus       357 ~~l~~l  362 (459)
T PRK05965        357 AGLDAL  362 (459)
T ss_pred             HHHHhh
Confidence            999875

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=98.81  E-value=1.5e-06  Score=86.07  Aligned_cols=253  Identities=9%  Similarity=-0.004  Sum_probs=137.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++........ ....+...++.+.|.+++.....  ......++++|+||+..|++.++..      
T Consensus        55 h~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~~--~~~~~f~~~sGsEA~e~AlklAr~~------  125 (442)
T TIGR00709        55 HNHPNMKQKILDYLQSGLPLHTL-DLTTPLKDAFIEALLNIIPKRKM--DYKLQFPGPSGADAVEAAIKLAKTY------  125 (442)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCCCcCC--CccEEEeCCCHHHHHHHHHHHHHHh------
Confidence            44678888888877653321111 11233444566778887643210  0012344589999999999998874      


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhc------------ceeEEEeccCCcccc--------CH----HHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE------------VELKEVKLEEGYYVM--------NP----VKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~--------d~----~~L~~~i~-  200 (369)
                       .|    +.+|+.-. ..|-...-++...|            .++..+|... ..+.        +.    +.+++.++ 
T Consensus       126 -tg----r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (442)
T TIGR00709       126 -TG----RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPH-EYRCPFGIGGEAGSNASIEYFENFIED  199 (442)
T ss_pred             -cC----CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCc-cccccccCCchhHHHHHHHHHHHHHHh
Confidence             12    35566544 44444333333322            1233444321 1111        11    22344443 


Q ss_pred             -----hcCcEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcE
Q 017569          201 -----ENTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKS  270 (369)
Q Consensus       201 -----~~~~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds  270 (369)
                           ++..+|++.......|.+.    -+++|.++|+++      |+++|.|+++.++..  ...-..+ .+.+ ..|.
T Consensus       200 ~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tGfGR--tG~~~a~~~~gv-~PDi  270 (442)
T TIGR00709       200 VESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH------DIKLILDEVQAGFGR--SGTMFAFEHAGI-EPDF  270 (442)
T ss_pred             hccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCC--CCchhHHHHcCC-CCcE
Confidence                 2455666666656656552    399999999999      999999999887533  1110011 1112 4688


Q ss_pred             EEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      ++  ..|.+++.+..|+++.+++ .  ..+.  ....+   .++  .+  +.....+.-++|+.+..+++.+ +..++.+
T Consensus       271 v~--~gK~l~~G~Pigav~~~~~-~--~~~~--~~~~~---~T~--~g--npla~aaa~a~L~~i~~~~l~~-~~~~~g~  335 (442)
T TIGR00709       271 VV--MSKAVGGGLPLAVLLIAPE-F--DAWQ--PAGHT---GTF--RG--NQLAMVTGTEALNYWKDDNLAQ-NAQERGE  335 (442)
T ss_pred             EE--EcccccCCcccEEEEEchH-H--hccC--CCcCC---CCC--Cc--CHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence            78  5687777788899988654 2  2211  11100   111  11  1122334445566665555443 7777788


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       336 ~l~~~L~~  343 (442)
T TIGR00709       336 RITSFLDD  343 (442)
T ss_pred             HHHHHHHH
Confidence            88888875

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=98.81  E-value=1.7e-07  Score=84.46  Aligned_cols=247  Identities=12%  Similarity=-0.018  Sum_probs=151.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|++.++-..++.+........   -++..+.+.+...++++-+.++       .++..++=.||.-++.+++.+   
T Consensus        81 sshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED-------~ilypscfdANag~feail~p---  150 (417)
T KOG1359|consen   81 SSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED-------TILYPSCFDANAGAFEAILTP---  150 (417)
T ss_pred             cCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCc-------eEEeccccccchHHHHHhcCh---
Confidence            446788887777777654433322   2667777777778999988875       677788888887777777553   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCC
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFE  219 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~  219 (369)
                                .+.|+..+.-|.|+....+++.         . ...+|+..|+..+.+    +-++|+-...-+.-|-+.
T Consensus       151 ----------edAvfSDeLNhASIIdGirLck---------r-y~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdia  210 (417)
T KOG1359|consen  151 ----------EDAVFSDELNHASIIDGIRLCK---------R-YRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIA  210 (417)
T ss_pred             ----------hhhhhccccccchhhhhhHHHh---------h-hccchhHHHHHHHHHhhhheEEEEEecceeccCCCcc
Confidence                      2456666678888887776643         1 356777778876654    334555444556778999


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      |+++|++++++|      +.++++|.|++-+++.-......-.+. ...+|.+.....|.+++..| |+... .+.+. .
T Consensus       211 Pl~ei~~La~kY------gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttg-p~~li-~  281 (417)
T KOG1359|consen  211 PLEEISQLAKKY------GALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTG-PKPLI-S  281 (417)
T ss_pred             cHHHHHHHHHhc------CcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccC-ChhHH-H
Confidence            999999999999      999999999986654211111112233 44688888889999875544 44433 33332 1


Q ss_pred             ccc-cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          299 ELV-FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       299 ~~~-~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      -+. ..-+|+..+.--+.    - ...+++++..+.  ..  -..+ +...+.+++++.+.+.||
T Consensus       282 llrqr~RpylFSnslppa----v-V~~a~ka~dllm--~s--~~~i~~~~a~~qrfr~~me~aGf  337 (417)
T KOG1359|consen  282 LLRQRSRPYLFSNSLPPA----V-VGMAAKAYDLLM--VS--SKEIQSRQANTQRFREFMEAAGF  337 (417)
T ss_pred             HHHhcCCceeecCCCChh----h-hhhhHHHHHHHH--hh--HHHHHHHHHHHHHHHHHHHhcCc
Confidence            222 23356544321000    0 011222222111  11  1222 667777788888877775

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.81  E-value=2.5e-06  Score=84.13  Aligned_cols=255  Identities=11%  Similarity=-0.068  Sum_probs=137.6

Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      +..+|.+.+++.+.+++..+... .....+...++.+.+.+++.-+.    .....++++|+||+..|++.++..     
T Consensus        55 Gh~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~SGseA~e~AlklAr~~-----  124 (425)
T PRK07495         55 GHRHPRVIAAVKAQLDRFTHTCH-QVVPYENYVRLAERLNALVPGDF----AKKTIFVTTGAEAVENAVKIARAA-----  124 (425)
T ss_pred             CCCCHHHHHHHHHHHhhccCccc-CccCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHh-----
Confidence            34568888888888765332111 11122333456666777764321    024899999999999999998764     


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHhhhc-------------ceeEEEeccCCccccC----HHHHHHHHh-----hc
Q 017569          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEEGYYVMN----PVKAVELVD-----EN  202 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~~d----~~~L~~~i~-----~~  202 (369)
                        .|    +++|+.-.. .|-...-+....|             .++..+|...+...++    ++++++.+.     ++
T Consensus       125 --tg----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~  198 (425)
T PRK07495        125 --TG----RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQR  198 (425)
T ss_pred             --hC----CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCc
Confidence              12    345665443 3433222222111             1244555532111122    455677764     23


Q ss_pred             CcEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccC
Q 017569          203 TICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY  278 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~  278 (369)
                      ..+|++.-....+|.+.    -+++|.++|+++      ++++++|+++.++..  ...-..++..-...|.++  ..|.
T Consensus       199 iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tG~gr--~G~~~a~~~~gv~pDi~t--lsK~  268 (425)
T PRK07495        199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQH------GILLIADEVQTGFAR--TGKLFAMEHHEVAADLTT--MAKG  268 (425)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhcCCc--CCCceeecccCCCCCEEe--ehhh
Confidence            55666555444556442    399999999999      999999999886432  111001111111356655  4688


Q ss_pred             CCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       279 l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +.+....|+++.+++ .. +.+.  ....     ..|..+.  .....+..++++.+..+++.+ +..++.++|+++|++
T Consensus       269 l~~G~pigav~~~~~-i~-~~~~--~~~~-----~~T~~~~--pl~~aaa~a~l~~l~~~~l~~-~~~~~g~~l~~~L~~  336 (425)
T PRK07495        269 LAGGFPLAAVTGRAE-IM-DAPG--PGGL-----GGTYGGN--PLGIAAAHAVLDVIEEEDLCE-RANQLGNRLKQRLAS  336 (425)
T ss_pred             hcCCccceEEEEcHH-HH-hccC--CCCc-----CCCCCCC--HHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHH
Confidence            776677888887542 22 2211  1000     1111111  112333346677776555444 666677777777765

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.7e-08  Score=89.72  Aligned_cols=233  Identities=14%  Similarity=0.048  Sum_probs=152.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh
Q 017569           93 TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR  172 (369)
Q Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~  172 (369)
                      ...+..+.....-++.|...-. +.+.+-..+|  +++.+++...|.+.+          +...|+.+.....|..+.+-
T Consensus        55 l~~isne~a~~~i~l~glhav~-nc~vvpl~tg--mslslc~~s~r~krp----------kakyiiw~ridqks~~ksi~  121 (432)
T KOG3843|consen   55 LACISNEFAKDAIHLAGLHAVA-NCFVVPLATG--MSLSLCFLSLRHKRP----------KAKYIIWLRIDQKSCFKSII  121 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhh-ceeEEecccc--ccHHHHHHHHhhcCC----------cccEEEEEecchHHHHHHHH
Confidence            3445555555566777776411 1122223334  566677777766411          11257888888888888888


Q ss_pred             hhcceeEEEec--cCCccccCHHHHHHHHhhc-CcEEEEeeCCCCccc---CCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          173 YFEVELKEVKL--EEGYYVMNPVKAVELVDEN-TICVAAILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       173 ~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~~-~~~v~~~~~~~~tG~---~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      ..|++++.|.-  +.|....|++.+++.|++. +.+|...+.+|.+-+   .|.+++|+.+|..|      +++-+|..|
T Consensus       122 ~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~------diphivnna  195 (432)
T KOG3843|consen  122 HAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAH------DIPHIVNNA  195 (432)
T ss_pred             hcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHcc------Cchhhhccc
Confidence            88999777763  4466788999999999873 455555555554443   48899999999999      999999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHH
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQII  326 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l  326 (369)
                      ||......+. .........++|.++-+..|.+++|.|.+++..-+...+ +.  ....|.+...          ..+.+
T Consensus       196 yglqsee~i~-~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~i-q~--iak~ypgras----------a~ps~  261 (432)
T KOG3843|consen  196 YGLQSEECIH-KIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFI-QE--IAKMYPGRAS----------ASPSL  261 (432)
T ss_pred             cccchHHHHH-HHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHH-HH--HHHhCCCccc----------cCccH
Confidence            9964321111 011112266899999999999999999766654332222 11  1234554432          23456


Q ss_pred             HHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          327 AQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       327 ~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      -+...|..+|..+|.+.  .-.+|--|++.++.+
T Consensus       262 dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~  295 (432)
T KOG3843|consen  262 DLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIK  295 (432)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999999888  666777777777654

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.78  E-value=1.7e-06  Score=85.30  Aligned_cols=200  Identities=13%  Similarity=-0.044  Sum_probs=115.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++..... ......+-+.++.+.|.+++....    .....++++|+||+..|++.++..      
T Consensus        49 h~~p~v~~a~~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~AlklAr~~------  117 (420)
T TIGR00700        49 HSHPRVVDAVRTQVAEFTHTC-FMVTPYEGYVALAEKLNRIAPGSG----PKKSVFFNSGAEAVENAVKIARSY------  117 (420)
T ss_pred             CCCHHHHHHHHHHHHhccCcc-ccccCChHHHHHHHHHHHhCCCCC----CCEEEEeCCcHHHHHHHHHHHHHh------
Confidence            445788888888876533211 111112223355566777663211    124799999999999999998764      


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHhhhc--------c-----eeEEEeccCC----------ccccCHHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFE--------V-----ELKEVKLEEG----------YYVMNPVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G--------~-----~v~~v~~~~~----------~~~~d~~~L~~~i~--  200 (369)
                       .|    +++|+.- ...|-...-++...|        .     ++..+|....          .+.-+++.+++.+.  
T Consensus       118 -tg----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (420)
T TIGR00700       118 -TG----RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID  192 (420)
T ss_pred             -cC----CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh
Confidence             12    3455543 444443333332211        1     1333443210          01112566777663  


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                         ++..+|++.-....+|.+.+    +++|.++|+++      ++++++|++|.++..  ...-..+...-...|.++ 
T Consensus       193 ~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tg~gr--~g~~~a~~~~~~~pDi~~-  263 (420)
T TIGR00700       193 VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH------GIVFIADEVQTGFAR--TGAMFACEHEGPEPDLIT-  263 (420)
T ss_pred             cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--cchhHHHhhcCCCCCEEE-
Confidence               24566776666666676644    99999999999      999999999987533  110001111112467655 


Q ss_pred             cCccCCCCCCCeEEEEEeC
Q 017569          274 SGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       274 ~~hK~l~~p~g~g~l~~~~  292 (369)
                       ..|.+.+.+..|+++.++
T Consensus       264 -lsK~l~~G~pig~v~~~~  281 (420)
T TIGR00700       264 -TAKSLADGLPLSGVTGRA  281 (420)
T ss_pred             -eeccccCCcceEEEEecH
Confidence             678887778899998754

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=98.78  E-value=2.7e-08  Score=88.19  Aligned_cols=114  Identities=20%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHH
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVEL  198 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~  198 (369)
                      ...+..|+.|.+-+.+++.+.+        |    +.+|+...|+|..|.-.+...+++|+.+|.+++ |.++++++.+.
T Consensus        88 nic~GvGsDE~ID~iiR~~c~P--------G----keKIl~cPPtysMY~v~A~iNd~eVvkvpl~pd-F~lnvdai~ev  154 (375)
T KOG0633|consen   88 NICVGVGSDELIDLIIRCVCDP--------G----KEKILDCPPTYSMYVVDAAINDAEVVKVPLNPD-FSLNVDAIAEV  154 (375)
T ss_pred             ceEEecCcHHHHHHHHhheecC--------C----ccceeecCCcceeEEEEeecCCceEEEecCCCC-ccccHHHHHHH
Confidence            4788889999999999998774        2    468999999998887788889999999999986 99999999998


Q ss_pred             Hhh--cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccc
Q 017569          199 VDE--NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (369)
Q Consensus       199 i~~--~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~  250 (369)
                      +..  .++++++++|.||||.+-..+.|-++.+-. .    +..++||+||-.+
T Consensus       155 l~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p-~----nglVVvDEAYidF  203 (375)
T KOG0633|consen  155 LELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMP-D----NGLVVVDEAYIDF  203 (375)
T ss_pred             HhccccceEEEEcCCCCCCcccccHHHHHHHHhCC-C----CcEEEEeeeeEee
Confidence            865  579999999999999998888888888643 2    7899999998654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.9e-08  Score=92.65  Aligned_cols=228  Identities=11%  Similarity=-0.018  Sum_probs=138.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~  171 (369)
                      +..++.+++.+.+|+++|.+.      ..++..| -..|.+.+-++..+             +..|+-.+..|.|+...|
T Consensus       179 G~~~~hkelE~l~A~f~g~e~------a~vF~mG-f~TNs~~~p~l~~~-------------gsLIiSDelNHaSi~~Ga  238 (519)
T KOG1357|consen  179 GTTEEHKELEELVARFLGVED------AIVFSMG-FATNSMNIPSLLGK-------------GSLIISDELNHASLITGA  238 (519)
T ss_pred             ccHHHHHHHHHHHHHhcCCcc------eEEEecc-ccccccCcceeecC-------------Ccceeeccccchheeccc
Confidence            667777888888999999986      1344433 44444444444331             346666778899999999


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhh-------cC-----cE-EEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDE-------NT-----IC-VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-------~~-----~~-v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      ++-|+.++...-+      |..+||+.+.+       +|     ++ |++-.-...-|.+.++.++.+++|++      .
T Consensus       239 RLSgAtiRVfkHN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkky------k  306 (519)
T KOG1357|consen  239 RLSGATTRVFRHN------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKY------K  306 (519)
T ss_pred             cccCceEEEEecC------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccc------c
Confidence            9999999888765      34556665553       22     33 33333444779999999999999999      9


Q ss_pred             ceEEeecccccccccccCCCc--cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccc
Q 017569          239 TPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL  316 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l  316 (369)
                      .+++.|+|++.++.+-.....  -+..+...+|.+-.-+-|.+++..  |.+ ..+++.. +.+.....+.-...     
T Consensus       307 ayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G--Gyi-agsk~li-d~lrt~s~~~~yat-----  377 (519)
T KOG1357|consen  307 AYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG--GYI-AGSKELI-DYLRTPSPSALYAT-----  377 (519)
T ss_pred             EEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc--cee-cCcHHHH-hhhccCCCceeecc-----
Confidence            999999999887763111000  011112346666666777765222  334 3333222 22222222211111     


Q ss_pred             cCCcchhHHHHHHHHHHHh-cHh----hHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          317 NFSKGSSQIIAQYYQFIRL-GFE----VIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       317 ~~tr~~~~~l~~~~~l~~l-g~~----G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                        +-+...+-....+++.+ |++    |-+++ +..++.+|++..|+..||+
T Consensus       378 --~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfi  427 (519)
T KOG1357|consen  378 --SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFI  427 (519)
T ss_pred             --cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEE
Confidence              11222223333555655 433    33444 9999999999999999886

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.77  E-value=6e-07  Score=83.75  Aligned_cols=231  Identities=16%  Similarity=0.087  Sum_probs=139.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCCC--eEEecCCCcchH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS-SEAIMLAGLAFKRKWQQKRKEQGKPYDKP--NIVTGANVQVCW  167 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg-t~a~~~al~~~~~~~~~~~~~~g~~~~~~--~Vi~s~~~h~s~  167 (369)
                      ....++-.++.+.++++++.|.+    +.+.+..|| |....++.+.+...             +.  -|....-+..++
T Consensus        46 k~~~~v~~~a~~~lreLl~iPd~----Y~VlflqGGat~qf~~~p~nLl~~-------------~~~~yv~~g~Ws~~a~  108 (365)
T COG1932          46 KEFKNVLEEAEKDLRELLNIPDD----YKVLFLQGGATGQFAMAPMNLLGK-------------RGTDYVDTGAWSEFAI  108 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCccHHHHHHHHHhhhcc-------------cCceeEeeeehhHhHH
Confidence            34566667788899999999974    456666654 55555566655442             11  133333333444


Q ss_pred             HHHHhhhc-ceeEEEeccC--CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC-HHHHHHHHHHhhhccCCCceEEe
Q 017569          168 EKFARYFE-VELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED-VKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       168 ~~~~~~~G-~~v~~v~~~~--~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~-l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                      ..+-++.. ..+..+...+  ....+++++.+  +.++..+|..++..|.+|+--| ...       .    +.+..+++
T Consensus       109 ~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~-------~----~~~~~~v~  175 (365)
T COG1932         109 KEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPD-------I----GSDGLLVA  175 (365)
T ss_pred             HHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCC-------C----CCCceEEE
Confidence            44433322 2222222111  22455665554  4455667999999999998643 111       1    11478999


Q ss_pred             ecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc----cccccCccCCCCCCccccCC
Q 017569          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE----LVFHINYLGSDQPTFTLNFS  319 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~----~~~~~~y~~~~~~~~~l~~t  319 (369)
                      |+..+.+..       ++|  +...|.+..+.+|.+ +|-|.+++++|+. .+.+.    +.....|......+ .+=.|
T Consensus       176 D~SS~ilsr-------~iD--vsk~dviyagaQKnl-GpaGltvvIvr~~-~l~r~~~~~~P~if~y~~~~~~~-s~yNT  243 (365)
T COG1932         176 DASSAILSR-------PID--VSKYDVIYAGAQKNL-GPAGLTVVIVRPD-LLERAESYTLPSIFDYLTHADNG-SMYNT  243 (365)
T ss_pred             ecccHHhcC-------CCC--hhHcceEEEehhhcc-CccceEEEEEcHH-HHhcccccCCchHhhchhhhccC-CccCC
Confidence            998776443       233  457899999999998 7888999999864 22211    11122333322211 11146


Q ss_pred             cchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          320 KGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       320 r~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ++.....-+...++.+..+ |++.+  |..+.|+.|++.+.+++|..
T Consensus       244 Pptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~  290 (365)
T COG1932         244 PPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYR  290 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            6555444444677777444 77877  99999999999999997764

>PRK06062 hypothetical protein; Provisional

Probab=98.76  E-value=1.9e-06  Score=85.56  Aligned_cols=252  Identities=10%  Similarity=-0.032  Sum_probs=140.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++........  ...+...++.+.|.++...+.     ....++++|+||+..|++.+|...     
T Consensus        69 h~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~t-----  136 (451)
T PRK06062         69 HQHPKVVAAIQEQAARLCTVAPA--HANDARSEAARLIAERAPGDL-----SKVFFTNGGADANEHAVRMARLHT-----  136 (451)
T ss_pred             CCCHHHHHHHHHHHHhcCCcCCc--cCCHHHHHHHHHHHHhCCCCC-----CEEEEcCChHHHHHHHHHHHHHhh-----
Confidence            44577888888877653221111  223334456666777764321     248999999999999999987641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-----------eeEEEeccCCccc------cC-------HHHHHHHHhh
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-----------ELKEVKLEEGYYV------MN-------PVKAVELVDE  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-----------~v~~v~~~~~~~~------~d-------~~~L~~~i~~  201 (369)
                        |    +.+|+.-.. .|-....++...|.           ++..++... .++      -|       +++|++.++.
T Consensus       137 --g----r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~le~~l~~  209 (451)
T PRK06062        137 --G----RPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPF-LYRSEFHATTEEEECERALAHLERVIEL  209 (451)
T ss_pred             --C----CceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCC-ccccccCCCChHHHHHHHHHHHHHHHHh
Confidence              1    355665443 34333333322221           122332211 011      12       6778888852


Q ss_pred             ----cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEE
Q 017569          202 ----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSIN  272 (369)
Q Consensus       202 ----~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~  272 (369)
                          +..+|++.-.....|.+.|    +++|.++|+++      |+++++|+++.++-.  ...-..+. +.+ ..|.++
T Consensus       210 ~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~------g~lLI~DEV~tGfGR--tG~~~a~~~~gv-~PDi~t  280 (451)
T PRK06062        210 EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH------GIVLIADEVMAGFGR--TGKWFAIEHFGV-VPDLIT  280 (451)
T ss_pred             cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEeeccccCCCc--CcHHHHHHhcCC-CCCeee
Confidence                3456666665556677777    99999999999      999999999886422  00000011 112 467776


Q ss_pred             EcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHH-H
Q 017569          273 VSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHK-K  350 (369)
Q Consensus       273 ~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a-~  350 (369)
                        ..|.+++.+ ..|.++.++ +.. +.+. ...+. +   ..|..+.  ....++..++|+.+..+++.+ +..++. +
T Consensus       281 --~gK~lggG~~Pigav~~~~-~i~-~~~~-~~~~~-~---~~T~~gn--pl~~Aaa~a~L~~l~~~~l~~-~~~~~G~~  348 (451)
T PRK06062        281 --FAKGVNSGYVPLGGVAISE-AIA-ATFA-DRPYP-G---GLTYSGH--PLACAAAVATINAMEEEGIVE-NAARIGAE  348 (451)
T ss_pred             --echhhhcCCcCcEEEEEcH-HHH-HHhc-cCCCC-C---CCCCCCC--HHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence              578887664 567777765 222 2221 11111 1   1111122  222444556677776555433 566665 5


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       349 ~l~~~L~~  356 (451)
T PRK06062        349 VLGPGLRE  356 (451)
T ss_pred             HHHHHHHH
Confidence            77776665

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=98.76  E-value=2.6e-06  Score=84.45  Aligned_cols=252  Identities=12%  Similarity=-0.021  Sum_probs=139.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++....... ....+.+.++.+.|.+++....    .....++++|+||+..|++.+|...     
T Consensus        58 H~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~----~~~v~f~~SGseA~e~AiklAr~~t-----  127 (445)
T PRK08593         58 HAPPRVVEAIKAQADKFIHYTPA-YMYHEPLVRLAKKLCELAPGDF----EKRVTFGLSGSDANDGIIKFARAYT-----  127 (445)
T ss_pred             CCCHHHHHHHHHHHHhccCcccc-ccCCHHHHHHHHHHHHhCCCCC----CCEEEECCchHHHHHHHHHHHHHhh-----
Confidence            44688888888887653322111 1123344456666877764321    0247899999999999999987641     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhc-------------ceeEEEeccCCccc-----cC-------HHHHHHHHh
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE-------------VELKEVKLEEGYYV-----MN-------PVKAVELVD  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~-----~d-------~~~L~~~i~  200 (369)
                        |    +.+|+.-+ ..|-...-++...+             -++..+|.... ++     .+       ++++++.+.
T Consensus       128 --g----r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~  200 (445)
T PRK08593        128 --G----RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDK-YRGMYEEPDANFVEEYLAPLKEMFE  200 (445)
T ss_pred             --C----CCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCcc-ccccccCCcHHHHHHHHHHHHHHHH
Confidence              2    34565544 34544333332222             12344543211 10     11       244555443


Q ss_pred             -----hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcE
Q 017569          201 -----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKS  270 (369)
Q Consensus       201 -----~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Ds  270 (369)
                           ++..+|++.-.....|.+.|    +++|.++|+++      ++++++|+++.++-.  ....... .+.+ ..|.
T Consensus       201 ~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~------g~llI~DEv~tg~Gr--tG~~~a~~~~gv-~pDi  271 (445)
T PRK08593        201 KYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH------GILFAVDDIQQGLGR--TGKWSSISHFNI-TPDL  271 (445)
T ss_pred             hhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--CchHHHHHhcCC-CCCE
Confidence                 34667777776666677755    99999999999      999999999865321  0000000 1111 3576


Q ss_pred             EEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      ++  ..|.+.+.+..|+++.+++ .. +.+. ...      ..+|..+..  ...++..++|+.+..+++.+ +..++.+
T Consensus       272 ~t--~gK~l~~G~p~gav~~~~~-i~-~~~~-~~~------~~~T~~~~p--l~~aaa~a~l~~l~~~~l~~-~~~~~g~  337 (445)
T PRK08593        272 MS--FGKSLAGGMPMSAIVGRKE-IM-ESLE-APA------HLFTTGANP--VSCAAALATIDMIEDESLLQ-RSAEKGE  337 (445)
T ss_pred             ee--ecccccCCcccEEEEEcHH-HH-hhhc-cCC------CCCCCCCCH--HHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence            65  5677766566788877532 22 2221 000      111211111  22444556677775554322 7777778


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       338 ~l~~~L~~  345 (445)
T PRK08593        338 YARKRFDQ  345 (445)
T ss_pred             HHHHHHHH
Confidence            88888875

>PRK07481 hypothetical protein; Provisional

Probab=98.74  E-value=3.8e-06  Score=83.45  Aligned_cols=266  Identities=10%  Similarity=0.015  Sum_probs=138.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+.........+.+.++.+.|.++++-+.    .....++++|+||+..|++.+|..+..   
T Consensus        58 h~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~----~~~v~f~~sGsEAve~AlklAr~~~~~---  130 (449)
T PRK07481         58 HNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG----MRRVFFSSGGSDSVETALKLARQYWKV---  130 (449)
T ss_pred             CCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC----CCEEEEcCchHHHHHHHHHHHHHHHHh---
Confidence            4457788888888765332211101123344456677888764211    124789999999999999999875421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCC---ccc-cCHHH--------HHHHHh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEG---YYV-MNPVK--------AVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~---~~~-~d~~~--------L~~~i~-  200 (369)
                       .|.. .+.+|+.-.. .|-...-++...|            -++..++....   .+. -|+++        +++.|. 
T Consensus       131 -~g~~-~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~  208 (449)
T PRK07481        131 -RGQP-ERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAF  208 (449)
T ss_pred             -cCCC-CCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence             1211 1345555443 4433222222111            11333332110   011 13333        444443 


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCCcEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Dsi  271 (369)
                         ++..+|++.-.....|.+-|    ++++.++|+++      ++++|.|+++.|+-. . ++.-+ .++  + ..|.+
T Consensus       209 ~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~a~~-~~g--v-~PDiv  278 (449)
T PRK07481        209 QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH------GILLIADEVVTGFGRTGSWFGSR-GWG--V-KPDIM  278 (449)
T ss_pred             cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc------CCEEEEeehhhCcCcCchhhHhh-hcC--C-CCCEE
Confidence               34566776666555566543    99999999999      999999999876432 1 11111 112  2 46887


Q ss_pred             EEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          272 NVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       272 ~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      ++  .|.+.+.+ ..|.++++++ .. +.+.......+......|..| .+. ..++..++|+.+..+++.+ +..++.+
T Consensus       279 ~~--gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~h~~T~~g-npl-~~aaa~a~L~~l~~~~l~~-~~~~~g~  351 (449)
T PRK07481        279 CL--AKGITSGYVPLGATMVNAR-IA-DAFEANADFGGAIMHGYTYSG-HPV-ACAAALATLDIVVREDLPA-NAAKRGA  351 (449)
T ss_pred             EE--eecccCCCcCceEEEEcHH-HH-HHHhccCccccccccCCCCCC-CHH-HHHHHHHHHHHHHhhhHHH-HHHHHHH
Confidence            74  68776653 5677877643 21 222111000000000011111 111 2344446666665555433 6777778


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       352 ~l~~~L~~  359 (449)
T PRK07481        352 YLLEGLQP  359 (449)
T ss_pred             HHHHHHHH
Confidence            88887775

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.73  E-value=3.3e-06  Score=83.21  Aligned_cols=254  Identities=11%  Similarity=-0.085  Sum_probs=138.0

Q ss_pred             CChHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.+++-... ...++  .+...++.+.+.+++....    .....++++|+||+..|++.++...    
T Consensus        56 h~~p~v~~ai~~ql~~~~~~~~~~~~--~~~~~~la~~l~~~~p~~~----~~~~~f~~sGseA~e~AlklAr~~t----  125 (421)
T PRK06777         56 HRHPKVVAAVRQQLDQFTHTAYQIVP--YASYVTLAERINALAPIDG----PAKTAFFTTGAEAVENAVKIARAYT----  125 (421)
T ss_pred             CCCHHHHHHHHHHHhhcccccccccC--ChHHHHHHHHHHHhCCCCC----CceEEEeCCcHHHHHHHHHHHHHhh----
Confidence            44677888888887653221 11111  2223355566777764321    1247889999999999999987641    


Q ss_pred             HhcCCCCCCCeEEecC-CCcchHHHHHhhhcc-------------eeEEEeccCCc----cccCHHHHHHHHhh-----c
Q 017569          146 KEQGKPYDKPNIVTGA-NVQVCWEKFARYFEV-------------ELKEVKLEEGY----YVMNPVKAVELVDE-----N  202 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~-------------~v~~v~~~~~~----~~~d~~~L~~~i~~-----~  202 (369)
                         |    +++|+.-. ..|-...-++...|.             .+..+|.....    ..-+++.+++.+.+     +
T Consensus       126 ---g----r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (421)
T PRK06777        126 ---G----RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQ  198 (421)
T ss_pred             ---C----CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCc
Confidence               1    34565544 344433333322221             12223322100    11246678887752     3


Q ss_pred             CcEEEEeeCCCCcccC-CC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccC
Q 017569          203 TICVAAILGSTLTGEF-ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY  278 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~-~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~  278 (369)
                      ..+|++.-.....|.. -|   +++|.++|+++      ++++++|++|.++..  ..........-...|.++  ..|.
T Consensus       199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEv~tg~gr--~g~~~~~~~~~~~pDiv~--~sK~  268 (421)
T PRK06777        199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH------GILLIADEVQTGFAR--TGKLFAMEYYDVKPDLIT--MAKS  268 (421)
T ss_pred             eEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCcc--CCchhhhhhcCCCCCEEe--eehh
Confidence            4566666666666643 23   99999999999      999999999986432  111001110011356555  5788


Q ss_pred             CCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       279 l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +++.+..|+++.++. .. +.+.. .   ..   ..|..+  +.....+..++|+.+..+.+.+ +..++.++|++.|++
T Consensus       269 l~~G~pigav~~~~~-i~-~~~~~-~---~~---~~T~~~--~p~~~aaa~a~L~~~~~~~l~~-~~~~~g~~l~~~L~~  336 (421)
T PRK06777        269 LGGGMPISAVVGRAE-VM-DAPAP-G---GL---GGTYAG--NPLAVAAALAVLDVIAEEKLCQ-RALILGAHLVEVLEK  336 (421)
T ss_pred             hcCCCceEEEEEcHH-HH-hccCC-C---CC---CCCCCc--CHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHH
Confidence            777788899987532 22 22111 0   00   111111  1112333334555444433222 777888888888887


Q ss_pred             c
Q 017569          359 S  359 (369)
Q Consensus       359 ~  359 (369)
                      +
T Consensus       337 l  337 (421)
T PRK06777        337 A  337 (421)
T ss_pred             H
Confidence            5

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.70  E-value=4.2e-06  Score=83.37  Aligned_cols=266  Identities=12%  Similarity=-0.030  Sum_probs=143.5

Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      +..+|.+.+++.+.++.-.+... .....+.+.++.+.|.+++....     ....++++|+||+..|++.++..+..+ 
T Consensus        71 Gh~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseAve~AlklAr~~~~~~-  143 (460)
T PRK06916         71 GHQVPELDEAIREQLNKIAHSTL-LGLANVPSILLAEKLIEVVPEGL-----KKVFYSDSGATAVEIAIKMAFQYWQNK-  143 (460)
T ss_pred             CCCCHHHHHHHHHHHHhCCCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhc-
Confidence            34568888888888865322111 11123344566677888764321     248999999999999999998753211 


Q ss_pred             HhcCCCCCCCeEEecC-CCcchHHHHHhhhcc------------eeEEEeccC-Cc----------cccCHHHHHHHHhh
Q 017569          146 KEQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEE-GY----------YVMNPVKAVELVDE  201 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~-~~----------~~~d~~~L~~~i~~  201 (369)
                         |.. .+.+|+.-. ..|-....++.+.|-            .+..+|... ..          ..-+++++++.++.
T Consensus       144 ---g~t-gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~  219 (460)
T PRK06916        144 ---GKP-KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE  219 (460)
T ss_pred             ---CCC-CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh
Confidence               211 134555544 445443333333221            133343221 00          01245677777763


Q ss_pred             ---cCcEEEEee-CCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          202 ---NTICVAAIL-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       202 ---~~~~v~~~~-~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                         +..+|++.- .....|.+.    -++++.++|+++      ++++++|+++.|+-.  ...-..+...-...|.++ 
T Consensus       220 ~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~TG~GR--tG~~~a~~~~gv~PDiv~-  290 (460)
T PRK06916        220 KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY------NVLFITDEVATGFGR--TGKMFACEHENVTPDIMT-  290 (460)
T ss_pred             CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEeechhhCCCc--CchhhHHHhcCCCCCeee-
Confidence               445666554 245556552    389999999999      999999999766422  010001111111467777 


Q ss_pred             cCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          274 SGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       274 ~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                       ..|.+.+.+ ..|.++.+++ .. +.+.  ..+....  ....|..| .+. ...+..++|..+..+++.+ +..++.+
T Consensus       291 -~gK~l~gG~~Pi~av~~~~e-i~-~~~~--~~~~~~~~~~~~~T~~g-npl-~~aaa~a~l~~l~~~~l~~-~~~~~g~  362 (460)
T PRK06916        291 -AGKGLTGGYLPIAITVTTDE-IY-NAFY--GDYEEQKTFFHGHSYTG-NPL-GCAVALANLELYEKTNLIE-QVARKTE  362 (460)
T ss_pred             -eehhhhcCccccceeeecHH-HH-HHhh--ccccccCccccCCCCCC-CHH-HHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence             468766663 6778877643 21 1211  1110000  00111112 112 2334446666665555433 8888899


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      +|++.|+++
T Consensus       363 ~l~~~l~~l  371 (460)
T PRK06916        363 YVATQLEDL  371 (460)
T ss_pred             HHHHHHHHh
Confidence            999999875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.70  E-value=6.4e-06  Score=82.00  Aligned_cols=250  Identities=10%  Similarity=-0.035  Sum_probs=138.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+..  .....+.+.++.+.|+++++...     ....++++|+||+..|++.++..      
T Consensus        87 h~~p~v~~Ai~~ql~~~~~~~--~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~------  153 (459)
T PRK06082         87 YGHPHVIEKVKEQMAKLPFSP--RRFTNETAIECAEKLTEIAGGEL-----NRVLFAPGGTSAIGMALKLARHI------  153 (459)
T ss_pred             CCCHHHHHHHHHHHHhCCCcc--CccCCHHHHHHHHHHHHhCCCCC-----CEEEECCCcHHHHHHHHHHHHHh------
Confidence            345788888888876533221  11223445566777888875321     24899999999999999998763      


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhcc------------eeEEEeccCCccc-----c------CHHHHHHHHhh-
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFEV------------ELKEVKLEEGYYV-----M------NPVKAVELVDE-  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~-----~------d~~~L~~~i~~-  201 (369)
                       .|    +.+|+. ....|-....++...|.            ++..+|... .++     .      +++.|++.++. 
T Consensus       154 -tg----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~  227 (459)
T PRK06082        154 -TG----NFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAV-SYRGAFPDADGSDVHYADYLEYVIEKE  227 (459)
T ss_pred             -cC----CCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCc-ccccccCChhHHHHHHHHHHHHHHhcC
Confidence             11    344544 44455444333333221            133343211 011     0      13567777753 


Q ss_pred             -cCcEEEEeeCCCCccc-CCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc
Q 017569          202 -NTICVAAILGSTLTGE-FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH  276 (369)
Q Consensus       202 -~~~~v~~~~~~~~tG~-~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h  276 (369)
                       +..+|++.-.... |. +-|   +++|.++|+++      |+++++|+++.|+-..  ..-..+...-...|.++  ..
T Consensus       228 ~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tG~GRt--G~~fa~e~~gv~PDiv~--~g  296 (459)
T PRK06082        228 GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKH------NVLLIIDEIPNGMGRT--GEWFTHQAYGIEPDILC--IG  296 (459)
T ss_pred             CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHc------CCEEEEechhhCCCcc--chhhHhHhhCCCCCEEE--ec
Confidence             3455555444333 43 333   99999999999      9999999998764220  00000111111468777  57


Q ss_pred             cCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHH
Q 017569          277 KYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFF  355 (369)
Q Consensus       277 K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~  355 (369)
                      |.+++.+ ..|.++.++. .. ..+  ...+ ..    .|..+..  ...++..++|+.+..+++.+ +..++.++|++.
T Consensus       297 Kgl~gG~~P~~av~~~~~-i~-~~~--~~~~-~~----~T~~gnp--l~~aaa~a~L~~l~~~~l~~-~~~~~g~~l~~~  364 (459)
T PRK06082        297 KGLGGGLVPIAAMITKDK-YN-TAA--QISL-GH----YTHEKSP--LGCAAALATIEVIEQEGLLE-KVKADSQFMRER  364 (459)
T ss_pred             ccccCCCCcceEEEEcHH-HH-hhc--cCCC-CC----CCCCcCH--HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            8887663 6777877643 21 111  1000 00    1211211  12344446666675555433 778888888888


Q ss_pred             HHh
Q 017569          356 VIH  358 (369)
Q Consensus       356 L~~  358 (369)
                      |++
T Consensus       365 L~~  367 (459)
T PRK06082        365 LLE  367 (459)
T ss_pred             HHH
Confidence            876

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.69  E-value=7.4e-06  Score=81.42  Aligned_cols=266  Identities=11%  Similarity=-0.060  Sum_probs=142.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+.... ....+...++.+.+.++++.+.     ....++++|+||+..|++.++..+.. | 
T Consensus        70 h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGseAve~AlKlA~~~~~~-r-  141 (453)
T PRK06943         70 HANPRINAALKDQLDTLEHAMLA-GCTHEPAIELAERLAALTGGTL-----GHAFFASDGASAVEIALKMSFHAWRN-R-  141 (453)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHH-h-
Confidence            44688888888887653221111 1122334456667777765331     24899999999999999999875432 1 


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCCcc-----------ccCHHHHHHHHhh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYY-----------VMNPVKAVELVDE-  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~-----------~~d~~~L~~~i~~-  201 (369)
                        |.. .+.+|+.-.. .|-...-++...|-            .+..+|.....+           .=+++++++.++. 
T Consensus       142 --g~~-~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  218 (453)
T PRK06943        142 --GRG-DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER  218 (453)
T ss_pred             --CCC-CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence              211 1345665444 34332222222221            133343321000           0135777777753 


Q ss_pred             --cCcEEEEee-CCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          202 --NTICVAAIL-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       202 --~~~~v~~~~-~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                        +..+|++.- .....|.+.    -++++.++|+++      |+++|+|+++.|+-.  ...-..++..-...|.+++ 
T Consensus       219 ~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~------gillI~DEV~TG~GR--tG~~fa~~~~gv~PDivt~-  289 (453)
T PRK06943        219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY------GVHLIADEIAVGCGR--TGTFFACEQAGVWPDFLCL-  289 (453)
T ss_pred             CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc------CCEEEeechhhCCCC--CcchhHHHhCCCCCCeEee-
Confidence              445666554 245556652    399999999999      999999999876422  1110011111114788884 


Q ss_pred             CccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHH
Q 017569          275 GHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSS  353 (369)
Q Consensus       275 ~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~  353 (369)
                       .|.+.+.+ ..|.++.+++ .. +.+..... ........|..|.  ....++.-++|..+..+++-+ +..++.++|+
T Consensus       290 -gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~~-~~~~~~~~T~~gn--pl~~aaa~a~L~~i~~~~l~~-~~~~~G~~l~  362 (453)
T PRK06943        290 -SKGISGGYLPLSLVLSRDA-IF-AAFYDDDV-TRGFLHSHSYTGN--PLACRAALATLDLFAEDDVLA-RNARKSARLR  362 (453)
T ss_pred             -ehhhccCcccceEEEEcHH-HH-HhhcccCc-cCCccCCCCCCCC--HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence             68776663 6788887643 21 22211000 0000001111111  112334445566666555433 7778888999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|+++
T Consensus       363 ~~L~~l  368 (453)
T PRK06943        363 AALAPL  368 (453)
T ss_pred             HHHHHH
Confidence            988875

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.68  E-value=7.3e-06  Score=81.71  Aligned_cols=267  Identities=10%  Similarity=-0.074  Sum_probs=143.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-.+... .....+...++.+.+.+++..+.     ....++++|+||+..|++.++..+..+  
T Consensus        63 h~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlKlAr~~~~~~--  134 (466)
T PRK07030         63 HANPRINQRIKDQVDQLEHVIL-AGFSHEPVIELSERLVKITPPGL-----SRCFYADNGSSAIEVALKMSFHYWRNR--  134 (466)
T ss_pred             CCCHHHHHHHHHHHHhcCCccc-cccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHHh--
Confidence            4457788888888765322111 11223444566777887764221     248999999999999999998753221  


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhcc------------eeEEEeccCC-c--c--------ccCHHHHHHHHhh-
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG-Y--Y--------VMNPVKAVELVDE-  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~-~--~--------~~d~~~L~~~i~~-  201 (369)
                        |. ..+.+|+.-. ..|-...-++...|.            ++..+|.... .  .        .-+++.+++.+.. 
T Consensus       135 --g~-t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~  211 (466)
T PRK07030        135 --GK-PRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH  211 (466)
T ss_pred             --CC-CCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhC
Confidence              11 1134555444 344433333322221            1233432210 0  0        1135667777753 


Q ss_pred             --cCcEEEEee-CCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          202 --NTICVAAIL-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       202 --~~~~v~~~~-~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                        +..+|++.- .....|.+.    -+++|.++|+++      ++++|+|+++.|+-.  ...-..+...-...|.+++ 
T Consensus       212 ~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~------g~llI~DEV~TGfGR--tG~~~a~~~~gv~PDiv~~-  282 (466)
T PRK07030        212 HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY------GVHLIHDEIAVGFGR--TGTMFACEQAGIRPDFLCL-  282 (466)
T ss_pred             CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCcCc--cccchHHHhcCCCCCEEee-
Confidence              345555554 244446653    389999999999      999999999876432  1110011111114688884 


Q ss_pred             CccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHH
Q 017569          275 GHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSS  353 (369)
Q Consensus       275 ~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~  353 (369)
                       .|.+.+.+ ..|.++.+++ .. +.+....+-.+......|..|.  ....++..++|+.+.++++.+ +..++.++|+
T Consensus       283 -gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~~~~~~~~h~~T~~gn--pla~aaa~a~L~~i~~~~l~~-~~~~~G~~l~  356 (466)
T PRK07030        283 -SKALTGGYLPLAAVLTTDT-VY-QAFYDDYPTLRAFLHSHSYTGN--PLACAAALATLDIFEQDNVIE-NNRALARRMA  356 (466)
T ss_pred             -ehhccCCcccceEEEecHH-HH-HHHhcccccccccccCCCCCCC--HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence             68777664 6777877643 21 1221100000000001111121  122344446677776665543 7888899999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|+++
T Consensus       357 ~~L~~l  362 (466)
T PRK07030        357 EATAHL  362 (466)
T ss_pred             HHHHHH
Confidence            999875

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.68  E-value=4.6e-06  Score=82.30  Aligned_cols=263  Identities=10%  Similarity=-0.054  Sum_probs=139.7

Q ss_pred             CChHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.++.-... ......  .-..++.+++.++++.+.     ....++++|+||+..|++.++..+..+ 
T Consensus        61 h~~p~v~~ai~~~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~~~-----~~v~f~~sGseA~e~AlklAr~~~~~~-  132 (427)
T TIGR00508        61 YNHPRLNAAAQKQIDKMSHVMFGGFTH--KPAIELCQKLVKMTPNAL-----DCVFLADSGSVAVEVALKMALQYWQAK-  132 (427)
T ss_pred             CCCHHHHHHHHHHHHhcCCccccccCC--HHHHHHHHHHHhhCCCCC-----CEEEEeCCcHHHHHHHHHHHHHHHHhh-
Confidence            44577888888877653211 111111  223356666777764332     248999999999999999988754321 


Q ss_pred             HhcCCCCCCCeEE-ecCCCcchHHHHHhhhcc-------------eeEEEeccCCcc-----ccCHHHHHHHHhh---cC
Q 017569          146 KEQGKPYDKPNIV-TGANVQVCWEKFARYFEV-------------ELKEVKLEEGYY-----VMNPVKAVELVDE---NT  203 (369)
Q Consensus       146 ~~~g~~~~~~~Vi-~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~-----~~d~~~L~~~i~~---~~  203 (369)
                         |.+. +.+|+ +....|-...-+....|-             ++..+|.....+     .-|++++++.+..   +.
T Consensus       133 ---~~~~-r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~v  208 (427)
T TIGR00508       133 ---GEKN-RQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEI  208 (427)
T ss_pred             ---CCCC-ccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcE
Confidence               1111 23444 444455433323322221             112222211101     1156778888763   33


Q ss_pred             cEEEEeeC-CCCccc----CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCcc
Q 017569          204 ICVAAILG-STLTGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHK  277 (369)
Q Consensus       204 ~~v~~~~~-~~~tG~----~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK  277 (369)
                      .+|++... +...|.    ..++++|.++|+++      ++++++|+++.++..  ....... .+.+ ..|.++  ..|
T Consensus       209 aavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~------~~llI~DEv~tG~Gr--~G~~~~~~~~~v-~pDi~~--~gK  277 (427)
T TIGR00508       209 AAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY------DILLIADEIATGFGR--TGKLFACEHAGV-VPDILC--VGK  277 (427)
T ss_pred             EEEEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CCccchhhhcCC-CCCEEE--ech
Confidence            45554432 444343    36799999999999      999999999855322  1100011 1112 467776  478


Q ss_pred             CCCCCC-CeEEEEEeCCCCcccccccc--cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHH
Q 017569          278 YGLVYA-GVGWVVWRTKDDLPDELVFH--INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSF  354 (369)
Q Consensus       278 ~l~~p~-g~g~l~~~~~~~~~~~~~~~--~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~  354 (369)
                      .+.+.. .++.++.++. .. +.+...  ..+...  .++  .+  +.....+..++|+.+..+.+.+ +..++.++|++
T Consensus       278 ~l~gG~~p~~a~~~~~~-~~-~~~~~~~~~~~~~~--~T~--~g--~p~~~aaa~a~l~~l~~~~~~~-~~~~~~~~l~~  348 (427)
T TIGR00508       278 ALTGGYMTLSATVTTDK-VA-QTISSGEAGCFMHG--PTF--MG--NPLACAVAEASLAILLEGEWQK-QVSAIENQLKR  348 (427)
T ss_pred             hhhcCcccceEEEEcHH-HH-HHHhcCCCCccccC--CCC--Cc--CHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHH
Confidence            876553 4566666432 21 122110  011100  111  12  1223455556677665544422 88889999999


Q ss_pred             HHHhcCC
Q 017569          355 FVIHSSY  361 (369)
Q Consensus       355 ~L~~~g~  361 (369)
                      .|++++.
T Consensus       349 ~L~~l~~  355 (427)
T TIGR00508       349 ELSPLRK  355 (427)
T ss_pred             HHHHhhc
Confidence            9988753

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.67  E-value=1.2e-06  Score=81.33  Aligned_cols=240  Identities=16%  Similarity=0.161  Sum_probs=140.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH
Q 017569           88 DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW  167 (369)
Q Consensus        88 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~  167 (369)
                      ..+.+...|..+    +.+.||++.       .+-|..|..|-..-+-.++.+        |....+.+.+++++.|+-.
T Consensus        76 agsrs~~~L~~a----vkdifGfq~-------~iPthQGRgAE~Il~~i~ik~--------~~~~pg~~~~~~sN~~FdT  136 (471)
T COG3033          76 AGSRSYYALADA----VKDIFGFQY-------TIPTHQGRGAENILIPILIKK--------GEQEPGSKMVAFSNYHFDT  136 (471)
T ss_pred             cccccHHHHHHH----HHHhcCcee-------eeeccCCccHHHHHHHHHhhh--------ccccCCccccccccceecc
Confidence            344555566655    677889876       566666655443333333321        1111223555566666653


Q ss_pred             -HHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhh----cCcEEEEeeCCCCc-ccC---CCHHHHHHHHH
Q 017569          168 -EKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDE----NTICVAAILGSTLT-GEF---EDVKLLHDLLT  229 (369)
Q Consensus       168 -~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~----~~~~v~~~~~~~~t-G~~---~~l~~I~~l~~  229 (369)
                       ..-....|+.++-+++++.         .+.+|++.|++.|++    +..+|+++.-+|.. |..   .+++++.++|+
T Consensus       137 Tr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~  216 (471)
T COG3033         137 TRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAK  216 (471)
T ss_pred             hhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHH
Confidence             3344566877777777531         368999999999987    34566655544444 433   78999999999


Q ss_pred             HhhhccCCCceEEeeccc-ccccccccC---CCcc-cc---c--c-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc-
Q 017569          230 KKNEETGWDTPIHVDAAS-GGFIAPFLY---PDLE-WD---F--R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-  297 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~-~~~~~~~~~---~~~~-~~---~--~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~-  297 (369)
                      ++      ++.++.|+|- ..-.. |+.   +.++ ..   +  . ...+|.++.|+.|=++++.| |+++++|+..+. 
T Consensus       217 ky------~ipvv~Da~RfaENaY-FIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDv  288 (471)
T COG3033         217 KY------DIPVVMDAARFAENAY-FIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDV  288 (471)
T ss_pred             Hc------CCcEEeehhhhhhhhh-hhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHH
Confidence            99      9999999872 11111 122   1111 11   1  1 45799999999999999988 899999875321 


Q ss_pred             --cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          298 --DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 --~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                        .+-..-.-+.+  ..++   |+-.++..-++...|..--  .+.-+ +..+.-+||.+.|.+.|.
T Consensus       289 y~~~~~~~V~~eG--~~tY---Ggl~GrdmealAvGL~e~~--~~~yl~~Rv~Qv~YL~~~l~~~GV  348 (471)
T COG3033         289 YEECRTLVVVQEG--FPTY---GGLAGRDMEALAVGLREGV--NFDYLAHRVAQVQYLADGLEEAGV  348 (471)
T ss_pred             HHHHHhheEeecc--cccc---CcccchhHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHhcCC
Confidence              11000011111  1222   3344443334433333211  12222 667777899999998875

>PRK07036 hypothetical protein; Provisional

Probab=98.66  E-value=1.1e-05  Score=80.42  Aligned_cols=263  Identities=14%  Similarity=-0.025  Sum_probs=140.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-.+.........+.+.++.+.+.+++..+.     ....++++|+||+..|++.++..+.. + 
T Consensus        67 h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~-~-  139 (466)
T PRK07036         67 YGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL-----NHVFLTTGGSTAVDSALRFVHYYFNV-R-  139 (466)
T ss_pred             CCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHHh-c-
Confidence            4468888888877765322111111233445566677777753321     24899999999999999998764321 1 


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhcc------------eeEEEeccCC---cccc--------CHHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFEV------------ELKEVKLEEG---YYVM--------NPVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~------------~v~~v~~~~~---~~~~--------d~~~L~~~i~--  200 (369)
                        |.. .+.+|+.-. ..|-...-+....|-            .+..+|....   ...+        .++.+++.+.  
T Consensus       140 --g~t-~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  216 (466)
T PRK07036        140 --GRP-AKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL  216 (466)
T ss_pred             --CCC-CccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc
Confidence              211 134565543 344333222222111            1333433210   0011        1344566564  


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCCcEEE
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKSIN  272 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Dsi~  272 (369)
                        ++..+|++.-.....|.+.|    +++|.++|+++      ++++|+|+++.|+-. . ++.-+.  .+.+ ..|.++
T Consensus       217 ~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~~~~~--~~gv-~PDivt  287 (466)
T PRK07036        217 GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY------DILYISDEVVTGFGRLGHFFASEA--VFGI-QPDIIT  287 (466)
T ss_pred             CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCcCchhhhhhh--hcCC-CCCEEE
Confidence              23566777666666677655    99999999999      999999999866422 1 111110  1122 367777


Q ss_pred             EcCccCCCCCC-CeEEEEEeCCCCcccccccc--cC--ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhH
Q 017569          273 VSGHKYGLVYA-GVGWVVWRTKDDLPDELVFH--IN--YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVD  347 (369)
Q Consensus       273 ~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~--~~--y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~  347 (369)
                        ..|.+.+.+ ..|.++++++ .. +.+...  ..  |..    ..|..|.. . ..++.-++|+.+..+++.+ +..+
T Consensus       288 --~gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~~----~~T~~gnp-l-~~aaa~a~Le~i~~~~l~~-~~~~  356 (466)
T PRK07036        288 --FAKGLTSGYQPLGAVIISER-LL-DVISGPNAKGNVFTH----GFTYSGHP-V-ACAAALKNIEIMEREGLCE-HVRE  356 (466)
T ss_pred             --EccccccCccccEEEEEcHH-HH-HHHhcccCcCccccc----CCCCCCCH-H-HHHHHHHHHHHHHhCCHHH-HHHH
Confidence              468776653 5777877642 22 222110  00  111    01111211 1 2333445566665544333 7888


Q ss_pred             HHHHHHHHHHhc
Q 017569          348 HKKLSSFFVIHS  359 (369)
Q Consensus       348 ~a~~l~~~L~~~  359 (369)
                      +.++|++.|+++
T Consensus       357 ~g~~l~~~L~~l  368 (466)
T PRK07036        357 VGPYFEERLASL  368 (466)
T ss_pred             HHHHHHHHHHHh
Confidence            889999988764

>PRK07678 aminotransferase; Validated

Probab=98.66  E-value=8.9e-06  Score=80.83  Aligned_cols=260  Identities=11%  Similarity=-0.044  Sum_probs=140.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-......+  ..+.+.++.+.|.++++..      ....++++|+||+..|++.+|..+..   
T Consensus        63 h~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~lae~l~~~~~~~------~~v~f~~sGseA~e~AlklAr~~t~~---  131 (451)
T PRK07678         63 YGRKELAEAAYEQLKTLSYFPLTQ--SHEPAIKLAEKLNEWLGGE------YVIFFSNSGSEANETAFKIARQYHAQ---  131 (451)
T ss_pred             CCCHHHHHHHHHHHHhcCcccccc--CCHHHHHHHHHHHHhCCCC------CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            446778888887776532221111  2233445667777776543      24789999999999999999875421   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCCcccc---------C---HHHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYVM---------N---PVKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~---------d---~~~L~~~i~-  200 (369)
                       .|.+ .+.+|+.-.. .|-....++...|            -++..+|... .++.         |   ++.+++.++ 
T Consensus       132 -~g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  208 (451)
T PRK07678        132 -KGEP-HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPD-CYRMPGIESEDIYDLECVKEIDRVMTW  208 (451)
T ss_pred             -cCCC-CCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCc-cccccccCChHHHHHHHHHHHHHHHHh
Confidence             1211 1345655443 3433332332211            1233344321 1111         1   233566664 


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCCcEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~Dsi  271 (369)
                         ++..+|++.-.....|.+.|    ++++.++|+++      |+++|+|+++.|+-. . ++.-+ .+.  + ..|.+
T Consensus       209 ~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~------g~llI~DEV~tGfGRtG~~~~~~-~~g--v-~PDiv  278 (451)
T PRK07678        209 ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH------GALLISDEVICGFGRTGKAFGFM-NYG--V-KPDII  278 (451)
T ss_pred             cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhcCCcCchhHHHH-hcC--C-CCCEE
Confidence               34566666655555566644    99999999999      999999999865422 1 11111 122  2 47888


Q ss_pred             EEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          272 NVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       272 ~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      ++  .|.+++. ...|.++++++ .. +.+.....+ +...-..|..+.  ....++..++|+.+..+++.+ +..++.+
T Consensus       279 t~--gK~lggG~~Pi~av~~~~~-i~-~~~~~~~~~-~~~~h~~T~~gn--p~~~aaa~a~l~~l~~~~~~~-~~~~~g~  350 (451)
T PRK07678        279 TM--AKGITSAYLPLSATAVKKE-IY-EAFKGKGEY-EHFRHVNTFGGN--PAACALALKNLEIMENENLIE-RSAQLGE  350 (451)
T ss_pred             Ee--ecccccCCcceeEEEEcHH-HH-HHHhccCcc-cccccCCCCCcC--HHHHHHHHHHHHHHHhCCHHH-HHHHHHH
Confidence            74  6877666 36788887643 21 222111100 000001111111  122344456666676655433 7777888


Q ss_pred             HHHHHHHh
Q 017569          351 LSSFFVIH  358 (369)
Q Consensus       351 ~l~~~L~~  358 (369)
                      +|++.|++
T Consensus       351 ~l~~~l~~  358 (451)
T PRK07678        351 LLLEQLKE  358 (451)
T ss_pred             HHHHHHHH
Confidence            88887764

>PRK07046 aminotransferase; Validated

Probab=98.65  E-value=5.6e-06  Score=82.24  Aligned_cols=246  Identities=9%  Similarity=-0.078  Sum_probs=136.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.....  .  ...+.+.++.+.+.++++.+       ...++++||||+..|++.+|...     
T Consensus        91 h~~p~i~~Av~~q~~~~~~~--~--~~~~~~~~lAe~l~~~~~~~-------~v~F~nSGtEA~e~AlrlAR~~T-----  154 (453)
T PRK07046         91 HSPAPVARALAEQARRGLTT--M--LPSEDAAWVGEELARRFGLP-------YWQVATTATDANRFVLRWARAVT-----  154 (453)
T ss_pred             CCCHHHHHHHHHHHHhCCCC--C--CCCHHHHHHHHHHHHHhCCC-------EEEEECCHHHHHHHHHHHHHHhh-----
Confidence            34578888888888654321  1  23455667778888887644       38999999999999999998741     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHH-h-----------hhcce------eEEEeccCCccccCHHHHHHHHhh-cCcEE
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFA-R-----------YFEVE------LKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~-~-----------~~G~~------v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (369)
                        |    +.+|+.-. ..|-...... .           ..|..      +..+|     + -|++++++.+.. +..+|
T Consensus       155 --G----r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-nd~~~l~~~l~~~~vAav  222 (453)
T PRK07046        155 --G----RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE-----F-NDLAALEAALADGDVAAV  222 (453)
T ss_pred             --C----CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC-----C-CCHHHHHHHhCCCCeEEE
Confidence              2    45566533 3343211111 1           00110      11111     1 178999998853 45566


Q ss_pred             EEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC
Q 017569          207 AAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       207 ~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      ++.-.....|.+.|    ++++.++|+++      |+++|+|+++... ..+-.-  ...+.+ ..|.++  ..|.+++.
T Consensus       223 i~EPi~g~~G~~~p~~~fl~~lr~lc~~~------g~llI~DEV~tfr-~g~Gg~--~~~~gv-~PDi~t--~gK~lggG  290 (453)
T PRK07046        223 LAEPAMTNIGMVLPEPGFHEALRELTRRY------GTLLVIDETHTIS-SGPGGY--TRAHGL-EPDFLV--VGKPIAGG  290 (453)
T ss_pred             EECCCCCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEEccccCc-cCCcch--hHHhCC-Ccccee--ehhhhcCC
Confidence            66554444465533    89999999999      9999999997410 000000  111122 357777  57888777


Q ss_pred             CCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcch--hHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          283 AGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGS--SQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~--~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ..+|.++.++. .. ..+... .....+   .....+|=.+  ...++..++|+.+..+++.+ +..++.++|++.|++
T Consensus       291 ~Pi~av~g~~~-i~-~~~~~~~~~~~~~---~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~-~~~~~g~~l~~~L~~  363 (453)
T PRK07046        291 VPCAVYGFSAE-LA-ERAQAAKASAPPG---HSGIGTTLSANALAMAAMRATLAEVMTEAAYA-HMLALAARLAAGLRA  363 (453)
T ss_pred             CcceeeeehHH-HH-HHHhhccccCCCC---CceeCCCCcccHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHH
Confidence            88888887643 22 222100 000000   0001112112  12334445556564444322 666777788777764

>PRK07480 putative aminotransferase; Validated

Probab=98.65  E-value=9.9e-06  Score=80.57  Aligned_cols=265  Identities=12%  Similarity=-0.071  Sum_probs=140.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+....+......+.++.+.|.+++..+.     ....++++|+||+..|++.+|..+..   
T Consensus        66 h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AlklAr~~~~~---  137 (456)
T PRK07480         66 YGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF-----NHVFFTNSGSEANDTVLRMVRHYWAL---  137 (456)
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            4457788888888765332211111223444556677887764322     24789999999999999999875321   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCC----------cc-ccCHHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEG----------YY-VMNPVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~----------~~-~~d~~~L~~~i~--  200 (369)
                       .|.. .+.+|+.-.. .|-....+....|.            .+..++....          .+ ...++.|++.+.  
T Consensus       138 -~g~~-~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  215 (456)
T PRK07480        138 -KGKP-QKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL  215 (456)
T ss_pred             -cCCC-CCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence             1211 1345665443 34332222222111            1222221100          00 001366666553  


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                        ++..+|++.-.....|.+.+    +++|.++|+++      |+++|+|+++.|+-.  ...-..+...-...|.++  
T Consensus       216 ~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~------g~llI~DEV~tGfGR--tG~~~a~~~~gv~PDiv~--  285 (456)
T PRK07480        216 GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY------DILLVADEVICGFGR--TGEWFGSQHFGIKPDLMT--  285 (456)
T ss_pred             CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--CcchhhhhhcCCCCCeee--
Confidence              24556666655555566654    99999999999      999999999866422  010000111111367776  


Q ss_pred             CccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHh-hHHHHHH
Q 017569          275 GHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCC-VDHKKLS  352 (369)
Q Consensus       275 ~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~-~~~a~~l  352 (369)
                      ..|.+.+.+ ..|.++.+++ .. +.+.........   ..|..|.  ....++..++|+.+..+++.+ +. .++.++|
T Consensus       286 ~gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~---~~T~~gn--pl~~Aaa~a~L~~l~~~~l~~-~~~~~~g~~l  357 (456)
T PRK07480        286 IAKGLTSGYIPMGAVGVGDR-VA-EVLIEEGGEFNH---GFTYSGH--PVAAAVALANLRILRDEGIVE-RVRDDTGPYL  357 (456)
T ss_pred             eehhhccCCccceEEEEcHH-HH-HHHhcCCCCccc---CCCCCcC--HHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHH
Confidence            468776653 5677777542 22 222111110001   1121122  222444556666666555433 66 4788899


Q ss_pred             HHHHHhc
Q 017569          353 SFFVIHS  359 (369)
Q Consensus       353 ~~~L~~~  359 (369)
                      ++.|+++
T Consensus       358 ~~~l~~l  364 (456)
T PRK07480        358 QKRLREL  364 (456)
T ss_pred             HHHHHHh
Confidence            9988863

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.64  E-value=8.1e-06  Score=81.19  Aligned_cols=250  Identities=14%  Similarity=-0.008  Sum_probs=139.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-......+ .......++.+.+.++++.+.     ....++++|+||+..|++.+|..      
T Consensus        69 h~~p~i~~Ai~~ql~~~~~~~~~~-~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~------  136 (457)
T PRK05639         69 YSHPKLVKAVQEQVALIQHSMIGY-THSERAIRVAEKLAEISPIEN-----PKVLFGLSGSDAVDMAIKVSKFS------  136 (457)
T ss_pred             CCCHHHHHHHHHHHHhccccccCc-cCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh------
Confidence            446788888888876532111111 112333456666777765332     24899999999999999998764      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc--------c-----eeEEEeccCCccc--------cCH--------HHHH
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE--------V-----ELKEVKLEEGYYV--------MNP--------VKAV  196 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G--------~-----~v~~v~~~~~~~~--------~d~--------~~L~  196 (369)
                       .|    +.+|+.-.. .|-....+....|        .     ++..+|.... ++        -|.        +.|+
T Consensus       137 -tg----r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~le  210 (457)
T PRK05639        137 -TR----RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNP-YRNPWGINGYEEPDELINRFLDYLE  210 (457)
T ss_pred             -cC----CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcc-ccccccccccCCHHHHHHHHHHHHH
Confidence             11    456665444 4433332222222        1     1445554311 11        022        3455


Q ss_pred             HHHh------hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccC
Q 017569          197 ELVD------ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRL  265 (369)
Q Consensus       197 ~~i~------~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~  265 (369)
                      +.+.      ++..+|++.-.....|.+.|    +++|.++|+++      ++++++|+++.|+-..  ..-.... +.+
T Consensus       211 ~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~------g~llI~DEv~tG~Grt--G~~~a~~~~gv  282 (457)
T PRK05639        211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH------GILLVMDEVQTGIGRT--GKWFASEWFEV  282 (457)
T ss_pred             HHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhccCcC--chHHHHHhcCC
Confidence            5442      34566666655555565533    89999999999      9999999998764221  0000011 112


Q ss_pred             CCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHh
Q 017569          266 PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCC  345 (369)
Q Consensus       266 ~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~  345 (369)
                       ..|.++  ..|.+.+..+.|.++.+++ ... . . .-.+.      .|..+. +. ..++.-++|+.+..+++.+ +.
T Consensus       283 -~PDiv~--~gK~l~gG~pi~av~~~~~-i~~-~-~-~~~~~------~T~~g~-p~-~~aaa~a~l~~l~~~~l~~-~~  346 (457)
T PRK05639        283 -KPDLII--FGKGVASGMGLSGVIGRKE-LMD-L-T-SGSAL------LTPAAN-PV-ISAAAEATLEIIEEENLLK-NA  346 (457)
T ss_pred             -CCCEEE--echhhcCCCcceeEEehHH-HHh-h-c-CCCcc------cCCCcC-HH-HHHHHHHHHHHHHHccHHH-HH
Confidence             478888  5788876677788887643 221 1 0 00111      111121 12 2344446677776655533 66


Q ss_pred             hHHHHHHHHHHHh
Q 017569          346 VDHKKLSSFFVIH  358 (369)
Q Consensus       346 ~~~a~~l~~~L~~  358 (369)
                      .++.++|++.|++
T Consensus       347 ~~~g~~l~~~L~~  359 (457)
T PRK05639        347 LKVGEFIKKRLLE  359 (457)
T ss_pred             HHHHHHHHHHHHH
Confidence            6688999998876

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.64  E-value=5.2e-06  Score=81.87  Aligned_cols=262  Identities=11%  Similarity=-0.059  Sum_probs=141.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-.+... .....+...++.+.|.++++.+.     ....++++|+||+..|++.++..+..+  
T Consensus        59 h~~p~i~~Ai~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~~-----~~v~f~~SGsEAve~AlklAr~~~~~~--  130 (428)
T PRK07986         59 YNHPQLNAAMKSQIDAMSHVMF-GGITHPPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQAK--  130 (428)
T ss_pred             CCCHHHHHHHHHHHhhcCCccc-cccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHhc--
Confidence            4458888888888865332211 11123344566677887764322     248999999999999999988753211  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccCCc----c-ccCHHHHHHHHhh---cCc
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEEGY----Y-VMNPVKAVELVDE---NTI  204 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~~~----~-~~d~~~L~~~i~~---~~~  204 (369)
                        |  ..+.+|+.-.. .|-...-++...|-             ++..+|.....    + .-|++++++.++.   +..
T Consensus       131 --g--~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~ia  206 (428)
T PRK07986        131 --G--EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIA  206 (428)
T ss_pred             --C--CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEE
Confidence              1  11345655444 44332222222121             12333322110    1 1256788888863   344


Q ss_pred             EEEEeeC-CCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccC
Q 017569          205 CVAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKY  278 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~  278 (369)
                      +|++... +...|.+    ..+++|.++|+++      ++++++|+++.|+-.  ...-.... +.+ ..|.++  ..|.
T Consensus       207 avi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~------g~lLI~DEv~tG~Gr--tG~~fa~~~~gv-~PDi~t--~gK~  275 (428)
T PRK07986        207 AVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE------GILLIADEIATGFGR--TGKLFACEHAGI-APDILC--LGKA  275 (428)
T ss_pred             EEEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCCeeeecccCC-CCCEEE--echh
Confidence            5555432 4444543    3499999999999      999999999865322  00000111 112 357776  5787


Q ss_pred             CCCC-CCeEEEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHH
Q 017569          279 GLVY-AGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFV  356 (369)
Q Consensus       279 l~~p-~g~g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L  356 (369)
                      +++. ...|.++.+++ .. +.+.... ...... .++  .+  +....++..++|+.+..+++.+ +..++.++|++.|
T Consensus       276 l~gG~~p~~av~~~~~-i~-~~~~~~~~~~~~~~-~T~--~g--~p~~~aaa~a~L~~i~~~~~~~-~~~~~g~~l~~~l  347 (428)
T PRK07986        276 LTGGTMTLSATLTTRE-VA-ETISNGEAGCFMHG-PTF--MG--NPLACAVANASLSLLESGDWQQ-QVAAIEAQLREEL  347 (428)
T ss_pred             hhCCcccCcchhchHH-HH-HHhhcCCCCccccC-CCC--Cc--CHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHH
Confidence            7655 35566666532 21 2221110 000000 111  12  2223455557777776665522 8888899999999


Q ss_pred             Hhc
Q 017569          357 IHS  359 (369)
Q Consensus       357 ~~~  359 (369)
                      +++
T Consensus       348 ~~l  350 (428)
T PRK07986        348 APL  350 (428)
T ss_pred             HHH
Confidence            875

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.64  E-value=8.3e-06  Score=81.27  Aligned_cols=253  Identities=12%  Similarity=0.034  Sum_probs=137.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe-CCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.+++....... ....+.+.++.+.+.+++..+..  ......++ ++|+||+..|++.+|..     
T Consensus        79 h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~~~~--~~~~v~f~~~SGSEAve~AlklAr~~-----  150 (464)
T PRK06938         79 HNHPVVIEAIQQVLADELPLHTL-DLTTPVKDQFVQDLFASLPEAFA--REAKIQFCGPTGTDAVEAALKLVKTA-----  150 (464)
T ss_pred             CCCHHHHHHHHHHHHhhhccccc-ccCCHHHHHHHHHHHHhCccccc--ccceEEEeCCCcHHHHHHHHHHHHHh-----
Confidence            44678888888887643211111 11123333445556665432210  00124454 69999999999998764     


Q ss_pred             HhcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCCccc------------cCHHHHHHHHh
Q 017569          146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYV------------MNPVKAVELVD  200 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~------------~d~~~L~~~i~  200 (369)
                        .|    +.+|+.-.. .|-...-++...|            -++..+|.... ++            .+++.+++.+.
T Consensus       151 --tg----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~i~  223 (464)
T PRK06938        151 --TG----RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYD-YRCPFGLGGEAGVRANLHYLENLLD  223 (464)
T ss_pred             --hC----CCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcc-ccccccCchhhHHHHHHHHHHHHHH
Confidence              12    345655443 4433322222211            12345554211 11            23677888886


Q ss_pred             h------cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c-ccCCCccccccCCCC
Q 017569          201 E------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P-FLYPDLEWDFRLPLV  268 (369)
Q Consensus       201 ~------~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~-~~~~~~~~~~~~~~~  268 (369)
                      +      +..+|++.-.....|.+-|    ++++.++|+++      |+++|+|+++.|+-. . ++.-+ .++  + ..
T Consensus       224 ~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~------giLlI~DEV~tGfGRtG~~~a~e-~~g--v-~P  293 (464)
T PRK06938        224 DPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA------GIPLIVDEIQSGFGRTGKMFAFE-HAG--I-IP  293 (464)
T ss_pred             hhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCCcCcHHHHHH-hcC--C-CC
Confidence            3      3456666554444455532    89999999999      999999999876532 0 11100 112  2 46


Q ss_pred             cEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHH
Q 017569          269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDH  348 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~  348 (369)
                      |.+++  .|.+++....|.++.++.  + ..+  .....+   .++  .|.  ....++..++|+.+..+++.+ +..++
T Consensus       294 Div~~--gKglggG~PlsAv~~~~~--~-~~~--~~~~~~---~T~--~gn--pla~Aaa~a~L~~l~~~~l~~-~~~~~  358 (464)
T PRK06938        294 DVVVL--SKAIGGSLPLAVVVYREW--L-DTW--QPGAHA---GTF--RGN--QMAMAAGSATLRYIKEHRLAE-HAAAM  358 (464)
T ss_pred             CEEEe--eccccCCCceEEEeehhH--h-hcc--CCCCCC---CCC--CcC--HHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence            88884  688777777888888653  2 222  111111   111  111  122344446666666655543 67777


Q ss_pred             HHHHHHHHHhc
Q 017569          349 KKLSSFFVIHS  359 (369)
Q Consensus       349 a~~l~~~L~~~  359 (369)
                      .++|++.|+++
T Consensus       359 G~~l~~~L~~l  369 (464)
T PRK06938        359 GERLREHLRQL  369 (464)
T ss_pred             HHHHHHHHHHH
Confidence            88888888763

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=98.61  E-value=1.8e-05  Score=78.69  Aligned_cols=200  Identities=10%  Similarity=-0.078  Sum_probs=110.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+.. ......+.+.++.+.|.+++.....    ....++++|+||+..|++.+|...     
T Consensus        70 h~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~~~----~~v~f~~sGseA~e~AlklAr~~t-----  139 (451)
T PRK06918         70 HSHPKVKEALHKQVDQYIHTG-FNVMMYEPYIELAEKLAALAPGSFD----KKVLFLNSGAEAVENAVKIARKYT-----  139 (451)
T ss_pred             CCCHHHHHHHHHHHHhccCcc-ccccccHHHHHHHHHHHHhCCCCCC----CEEEEcCCcHHHHHHHHHHHHHHh-----
Confidence            446788888888776532211 1111234455667778887753210    148999999999999999997641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccC-Cc--cccC--------HHHHHHHHh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEE-GY--YVMN--------PVKAVELVD-  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~-~~--~~~d--------~~~L~~~i~-  200 (369)
                        |    +.+|+.-.. .|-....++...|-             ++..+|... ..  ..+.        ++.+++.+. 
T Consensus       140 --g----r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T PRK06918        140 --K----RQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS  213 (451)
T ss_pred             --C----CCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHh
Confidence              1    345655443 44333333322221             133333211 00  0010        223444332 


Q ss_pred             ----hcCcEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEE
Q 017569          201 ----ENTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN  272 (369)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~  272 (369)
                          ++..+|++.-.....|.+.    -+++|.++|+++      +++++.|++|.++..  ......+.......|.++
T Consensus       214 ~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~------gillI~DEV~tg~gr--~g~~~a~~~~~v~pDi~t  285 (451)
T PRK06918        214 EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH------GILFVADEIQTGFAR--TGKYFAIEHFDVVPDLIT  285 (451)
T ss_pred             hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCcCc--cCceehhHhcCCCCCEEe
Confidence                2344455443333335432    289999999999      999999999987543  111001111011356554


Q ss_pred             EcCccCCCCCCCeEEEEEeC
Q 017569          273 VSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       273 ~~~hK~l~~p~g~g~l~~~~  292 (369)
                        ..|.+.+.+..|+++.++
T Consensus       286 --~sK~l~~G~pig~v~~~~  303 (451)
T PRK06918        286 --VSKSLGAGVPISGVIGRK  303 (451)
T ss_pred             --eehhhcCCCccEEEEEcH
Confidence              678887778899998753

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.61  E-value=9.2e-06  Score=80.21  Aligned_cols=250  Identities=10%  Similarity=-0.107  Sum_probs=134.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.....  ..  ..+.+.++.+.+.++++...     ....++++|+||+..|++.+|...     
T Consensus        69 h~~p~v~~ai~~q~~~~~~~--~~--~~~~~~~la~~L~~~~~~~~-----~~v~f~~SGsEA~e~AiklAr~~t-----  134 (433)
T PRK00615         69 HSHPKICDAIQQGAERGTSY--GL--TSEQEILFAEELFSYLGLED-----HKIRFVSSGTEATMTAVRLARGIT-----  134 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCC--CC--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHhh-----
Confidence            44688888888887653211  11  22334456667777775431     248999999999999999988641     


Q ss_pred             hcCCCCCCCeEEecCC-CcchH---HHHHhhhcce---e-EEE---eccCCcc---ccCHHHHHHHHhh---cCcEEEEe
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCW---EKFARYFEVE---L-KEV---KLEEGYY---VMNPVKAVELVDE---NTICVAAI  209 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~---~~~~~~~G~~---v-~~v---~~~~~~~---~~d~~~L~~~i~~---~~~~v~~~  209 (369)
                        |    +.+|+.-.. .|-..   ..+...-+-.   . ...   +......   .-|+++|++.+.+   +..+|++.
T Consensus       135 --g----r~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~E  208 (433)
T PRK00615        135 --G----RSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFE  208 (433)
T ss_pred             --C----CCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEEC
Confidence              2    345554333 33321   1111111100   0 000   0000000   0167889988863   34566666


Q ss_pred             eCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccCCCCCCC
Q 017569          210 LGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAG  284 (369)
Q Consensus       210 ~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~~p~g  284 (369)
                      ......|.+.|    +++|.++|+++      |+++++|+++.|+ .  ........ +.+ ..|.++  ..|.+++...
T Consensus       209 pv~~~~G~~~p~~~yl~~l~~lc~~~------g~llI~DEv~tG~-R--~G~~ga~~~~gv-~PDi~~--~gK~lggG~p  276 (433)
T PRK00615        209 PICANMGVVLPKPGFIEGIIQTCRRT------GSLSIMDEVVTGF-R--VAQGGAAAIYHV-KPDITV--YGKILGGGLP  276 (433)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcccccc-c--ccHhHHHHhcCC-CCCeEE--EcccccCCcc
Confidence            65556677655    56999999999      9999999998653 1  11100011 112 357666  5788765555


Q ss_pred             eEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          285 VGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      .|+++.+++ .. +.+... ..+..+     |..+  +-...++..++|+.+..+.+.+ +..++.++|++.|++
T Consensus       277 ~~av~~~~~-i~-~~~~~~~~~~~~~-----T~~g--~p~~~aa~la~L~~i~~~~~~~-~~~~~g~~l~~~l~~  341 (433)
T PRK00615        277 AAAVVAHKS-IM-DHLAPEGTIFQAG-----TLSG--NPLAMAAGKASINLCREQGFYT-QLSTLEQNFLSPIEE  341 (433)
T ss_pred             eeeeeecHH-HH-hhhcCCCCcccCC-----CCcc--cHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHH
Confidence            677777543 22 222110 001111     1111  1122455556777776555422 666677777666654

>PRK06917 hypothetical protein; Provisional

Probab=98.60  E-value=1.6e-05  Score=78.96  Aligned_cols=262  Identities=10%  Similarity=-0.039  Sum_probs=140.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++...+... +....+.+.++.+.|.+++....     ....++++|+||+..|++.++..+.. | 
T Consensus        47 h~hp~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~~~~-r-  118 (447)
T PRK06917         47 HGVKEIADAIKEQAEEVSFVYR-SQFTSEPAEKLAKKLSDLSPGDL-----NWSFFVNSGSEANETAMKIAIQHFQE-R-  118 (447)
T ss_pred             CCCHHHHHHHHHHHhhCcCccc-cccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCChHHHHHHHHHHHHHHHHh-c-
Confidence            4468888888888876422211 11223445567777888764321     24789999999999999999875422 1 


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHhhhcc------------eeEEEeccCCccc------------cCHHHHHHHHhh
Q 017569          147 EQGKPYDKPNIVTGANV-QVCWEKFARYFEV------------ELKEVKLEEGYYV------------MNPVKAVELVDE  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~------------~v~~v~~~~~~~~------------~d~~~L~~~i~~  201 (369)
                        |. ..+.+|+.-..+ |-...-++...|.            .+..+|... ..+            -+++.+++.++.
T Consensus       119 --g~-t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~le~~i~~  194 (447)
T PRK06917        119 --GI-QGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPY-CYRCPVQKVYPTCQLACATELETAIER  194 (447)
T ss_pred             --CC-CCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCc-ccccccCCChHHHHHHHHHHHHHHHHh
Confidence              11 123566654443 4332222222221            122233111 011            134677777763


Q ss_pred             ----cCcEEEEeeCCCCcc-cC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEE
Q 017569          202 ----NTICVAAILGSTLTG-EF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSI  271 (369)
Q Consensus       202 ----~~~~v~~~~~~~~tG-~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi  271 (369)
                          +..+|++.-.....| .+    +-+++|.++|+++      ++++++|+++.|+-.  ......+ .+.+ ..|.+
T Consensus       195 ~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~------g~llI~DEv~tGfGR--tG~~~a~~~~gv-~PDi~  265 (447)
T PRK06917        195 IGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY------DILFIADEVMTGLGR--TGAMFAMEHWGV-EPDIM  265 (447)
T ss_pred             cCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc------CCEEEEechhhCcCc--ccchhhHHhcCC-CCCEE
Confidence                345565554333233 43    2389999999999      999999999876422  1110001 1112 35776


Q ss_pred             EEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          272 NVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       272 ~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      +  ..|.+.+.+ ..|.++.+++ .. ..+.........   ..|..+.  ....++..++|+.+..+++.+ +..++.+
T Consensus       266 ~--~gK~l~~G~~Pi~a~~~~~~-i~-~~~~~~~~~~~~---~~T~~gn--pl~~aaa~a~l~~l~~~~l~~-~~~~~g~  335 (447)
T PRK06917        266 T--LGKGLGAGYTPIAATVVSDR-VM-EPILRGSRSIMS---GHTLSAN--PLSAATALAVLEYMEKHNLPE-KAAEKGE  335 (447)
T ss_pred             E--eeehhccCCcceEEEEEcHH-HH-HHHhccCccccc---ccCCCCC--HHHHHHHHHHHHHHHHCCHHH-HHHHHHH
Confidence            6  478877664 5677777542 22 222111111100   0011111  122444556666665555433 7777888


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      +|++.|+++
T Consensus       336 ~l~~~L~~l  344 (447)
T PRK06917        336 YLIKGLQKV  344 (447)
T ss_pred             HHHHHHHHH
Confidence            888888763

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.60  E-value=5.1e-06  Score=82.12  Aligned_cols=252  Identities=8%  Similarity=-0.055  Sum_probs=130.3

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.... +. .  ....+.++.+.+.+++...      ....++++|+||+..|++.+|..      
T Consensus        64 h~~p~v~~Ai~~q~~~~~~-~~-~--~~~~~~~la~~l~~~~p~~------~~v~f~~sGseA~e~AlklAr~~------  127 (431)
T PRK06209         64 HAYPPVVEAVREALQDGCN-FT-R--PSAIELDAAESFLELIDGA------DMVKFCKNGSDATSAAVRLARAY------  127 (431)
T ss_pred             CCCHHHHHHHHHHHHhCcC-CC-C--CCHHHHHHHHHHHHhCCcc------ceEEEecCHHHHHHHHHHHHHHH------
Confidence            4457888888888775432 11 2  2233445666777776321      13789999999999999998764      


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHH---Hhh--hcce--e--EEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCC
Q 017569          147 EQGKPYDKPNIVTG-ANVQVCWEKF---ARY--FEVE--L--KEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGST  213 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s-~~~h~s~~~~---~~~--~G~~--v--~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~  213 (369)
                       .|    +.+|+.. ...+.++...   ...  .|..  +  ..+.+..    -|+++|++++++   +..+|++.....
T Consensus       128 -tg----r~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~d~~~l~~~l~~~~~~~aavi~Epv~g  198 (431)
T PRK06209        128 -TG----RDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRY----NDIASLEALFEDHPGRIACVILEPATA  198 (431)
T ss_pred             -hC----CCeEEEeccCccccccccccccCCCCCCCChhHhccccccCC----CCHHHHHHHHHhCCCCEEEEEEccccC
Confidence             12    3455543 1221111000   000  0111  0  0111111    178999998864   334555432222


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ..+....+++|.++|+++      ++++++|+++.|+-.  ...-....+.+ ..|.++  ..|.+++....|.++.++.
T Consensus       199 ~~~~~~~l~~l~~lc~~~------g~lLI~DEv~tG~~~--~~~g~~~~~gv-~PDi~t--~gK~lggG~p~~av~~~~~  267 (431)
T PRK06209        199 DEPQDGFLHEVRRLCHEN------GALFILDEMITGFRW--HMRGAQKLYGI-VPDLSC--FGKALGNGFAVSALAGKRE  267 (431)
T ss_pred             CCCCHHHHHHHHHHHHHc------CCEEEEEcccccCCc--CcchhhHHhCC-Ccceee--ehhhhcCCcccEEEEEHHH
Confidence            122234499999999999      999999999865321  10000101122 356655  4788776566677777532


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                       .. ..+.......... ..++-..+.+....++..++|+.+..+++.+ +..++.++|++.|++
T Consensus       268 -i~-~~~~~~~~~~~~~-~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~-~~~~~g~~l~~~L~~  328 (431)
T PRK06209        268 -YM-ELGGLEHTDRERV-FLLSTTHGAETHALAAAIATMAIYRDEDVIE-RLHEQGAKLAAGVNE  328 (431)
T ss_pred             -HH-hhhcccccCCCCc-eeeccCCCCCHHHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHHHH
Confidence             21 1100000000000 0000001122233555667778886665432 666777777777765

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.57  E-value=1.4e-05  Score=78.78  Aligned_cols=263  Identities=11%  Similarity=-0.106  Sum_probs=137.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-.+.... ....+...++.+.+.++.+.+.     ....++++|+||+..|++.++..+..   
T Consensus        56 h~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~SGseA~e~AlklAr~~~~~---  126 (422)
T PRK05630         56 HGHPRLKAAAHKQIDTMSHVMFG-GLTHEPAIKLTRKLLNLTDNGL-----DHVFYSDSGSVSVEVAIKMALQYSKG---  126 (422)
T ss_pred             CCCHHHHHHHHHHHHhCCCcccC-CcCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh---
Confidence            44578888888887653221111 1122334456666777764321     24899999999999999998875321   


Q ss_pred             hcCCCCCCCeEEec-CCCcchHHHHHhhhcc-------------eeEEEeccCCccccC-------HHHHHHHHhhcCcE
Q 017569          147 EQGKPYDKPNIVTG-ANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMN-------PVKAVELVDENTIC  205 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d-------~~~L~~~i~~~~~~  205 (369)
                       .|.+ .+.+|+.- ...|-...-++...+-             .+..+|.... ...+       .+.+++.+.++..+
T Consensus       127 -~g~~-~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~iAA  203 (422)
T PRK05630        127 -QGHP-ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV-RGSSPQEISEYLRSLELLIDETVAA  203 (422)
T ss_pred             -cCCC-CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc-cCCChHHHHHHHHHHHHHHhhceEE
Confidence             1211 13455554 4445433333322221             1233433211 0111       24555556556666


Q ss_pred             EEEeeC-CCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          206 VAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       206 v~~~~~-~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      |++.-. ....|.+    +.+++|.++|+++      ++++++|+++.|+-.  ...-..+...-...|.++  ..|.+.
T Consensus       204 vi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~------g~llI~DEv~tG~Gr--tG~~~a~~~~gv~PDi~t--~gK~l~  273 (422)
T PRK05630        204 IIIEPIVQGAGGMRFHDVALIEGVRTLCDKH------DILLIADEIATGFGR--TGELFATLAAGVTPDIMC--VGKALT  273 (422)
T ss_pred             EEEechhcCcCCcccCCHHHHHHHHHHHHHc------CCEEEEecceeCCCc--CchhhHHHhcCCCCCeee--eechhh
Confidence            665542 4444554    4599999999999      999999999865422  000000111111356776  478875


Q ss_pred             CC-CCeEEEEEeCCCCcccccccc-c-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHH
Q 017569          281 VY-AGVGWVVWRTKDDLPDELVFH-I-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVI  357 (369)
Q Consensus       281 ~p-~g~g~l~~~~~~~~~~~~~~~-~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~  357 (369)
                      +. ...|++++++. .. +.+... . ....+. .++  .+  +.....+..++|+.+..+++.+ +..++.++|++.|+
T Consensus       274 gG~~p~~av~~~~~-i~-~~~~~~~~~~~~~h~-~T~--~g--~Pla~aaa~aaL~~l~~~~~~~-~~~~~g~~l~~~L~  345 (422)
T PRK05630        274 GGFMSFAATLCTDK-VA-QLISTPNGGGALMHG-PTF--MA--NPLACAVAHASLEIIETGMWRK-QVKRIEAELIAGLS  345 (422)
T ss_pred             cCccccceeeccHH-HH-HHHhccCCCCccccC-CCC--cC--CHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHH
Confidence            54 24566666532 21 222110 0 000000 111  11  1122444556677776554433 78888899998887


Q ss_pred             hc
Q 017569          358 HS  359 (369)
Q Consensus       358 ~~  359 (369)
                      ++
T Consensus       346 ~l  347 (422)
T PRK05630        346 PL  347 (422)
T ss_pred             Hh
Confidence            53

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.56  E-value=1.1e-05  Score=79.55  Aligned_cols=262  Identities=9%  Similarity=-0.101  Sum_probs=139.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++..+... .....+.+.++.+.+.+++..+.     ....++++|+||+-.|++.++..+..+  
T Consensus        60 h~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGseAve~AlklAr~~~~~~--  131 (429)
T PRK06173         60 YNHPRLNAAATNQLAKMSHIMF-GGFTHEPAVELAQKLLEILPPSL-----NKIFFADSGSVAVEVAMKMALQYQQAK--  131 (429)
T ss_pred             CCCHHHHHHHHHHHHhcCCccc-cccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCCchHHHHHHHHHHHHHHHHh--
Confidence            4458888888887765332111 11122333456666777664221     248999999999999999998753221  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc--------c-----eeEEEeccCCc-----cccCHHHHHHHHhh---cCc
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE--------V-----ELKEVKLEEGY-----YVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G--------~-----~v~~v~~~~~~-----~~~d~~~L~~~i~~---~~~  204 (369)
                        |.. .+.+|+.-.. .|-....++...|        .     .+..+|.....     ..-+++.|++.+..   +..
T Consensus       132 --g~~-~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iA  208 (429)
T PRK06173        132 --GEV-QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIA  208 (429)
T ss_pred             --CCC-CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEE
Confidence              211 1345655443 4432222222211        0     12334432100     01246778888853   345


Q ss_pred             EEEEeeC-CCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccC
Q 017569          205 CVAAILG-STLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKY  278 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~  278 (369)
                      +|++.-. ....|.+    +-+++|.++|+++      ++++++|+++.|+-.  ...-... .+.+ ..|.++  ..|.
T Consensus       209 Avi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~------g~llI~DEv~tG~Gr--tG~~~a~~~~gv-~PDiv~--~gK~  277 (429)
T PRK06173        209 ALILEPVVQGAGGMYFYSPTYLVKARELCDQY------GVLLIFDEIATGFGR--TGKLFALEHAGV-VPDIMC--IGKA  277 (429)
T ss_pred             EEEEcchhhccCCcccCCHHHHHHHHHHHHHc------CCeEEecchhcCCCc--CCcchHHHhcCC-CCCEEE--eehh
Confidence            5555542 4444554    2389999999999      999999999865321  0000001 1112 367777  5788


Q ss_pred             CCCCC-CeEEEEEeCCCCcccccccc-c-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHH
Q 017569          279 GLVYA-GVGWVVWRTKDDLPDELVFH-I-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFF  355 (369)
Q Consensus       279 l~~p~-g~g~l~~~~~~~~~~~~~~~-~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~  355 (369)
                      +++.. .+|.++.+++ .. +.+... . .+.-+  .++  .+  +....++..++|+.+..+++.+ +..++.++|++.
T Consensus       278 l~gG~~p~~a~~~~~~-i~-~~~~~~~~~~~~~~--~T~--~g--~p~~~aaa~a~l~~i~~~~~~~-~~~~~g~~l~~~  348 (429)
T PRK06173        278 LTGGYLTLSATITTEA-IA-QTICSGEAKCFMHG--PTF--MA--NPLACAIAAESIRLLLESPWQQ-NIQRIEAQLKQE  348 (429)
T ss_pred             hhCCccccceEEecHH-HH-HHHhcCCCCccccC--CCC--Cc--CHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHH
Confidence            76553 4566666542 21 121100 0 01100  011  11  1223455567777776655422 888889999999


Q ss_pred             HHhc
Q 017569          356 VIHS  359 (369)
Q Consensus       356 L~~~  359 (369)
                      |++.
T Consensus       349 L~~~  352 (429)
T PRK06173        349 LAPA  352 (429)
T ss_pred             HHHh
Confidence            9864

>PRK07483 hypothetical protein; Provisional

Probab=98.55  E-value=2.6e-05  Score=77.35  Aligned_cols=259  Identities=10%  Similarity=-0.020  Sum_probs=136.9

Q ss_pred             CChHHHHHHHHHHhccCCC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..+|.+.+++.+.+++-.. ....  ...+...++.+.|.+++....     ....++++|+||+-.|++.+|..+..  
T Consensus        46 h~~p~v~~av~~ql~~~~~~~~~~--~~~~~~~~lae~L~~~~p~~~-----~~v~f~~sGsEAve~AlklAr~~~~~--  116 (443)
T PRK07483         46 HSHPRVIAAIHAQIDRLAYAHTSF--FTTEPAEALADRLVAAAPAGL-----EHVYFVSGGSEAVEAALKLARQYFVE--  116 (443)
T ss_pred             CCCHHHHHHHHHHHHhccCccccc--cCCHHHHHHHHHHHHhCCCCC-----CEEEEcCCcHHHHHHHHHHHHHHHHh--
Confidence            4457788888888765321 1111  122334456667777764221     24889999999999999999875321  


Q ss_pred             HhcCCCCCCCeEEec-CCCcchHHHHHhhhc------------ceeEEEeccCCcccc-------------CHHHHHHHH
Q 017569          146 KEQGKPYDKPNIVTG-ANVQVCWEKFARYFE------------VELKEVKLEEGYYVM-------------NPVKAVELV  199 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s-~~~h~s~~~~~~~~G------------~~v~~v~~~~~~~~~-------------d~~~L~~~i  199 (369)
                        .|.. .+.+|+.- ...|-...-+....|            ..+..+|... .++-             .++++++++
T Consensus       117 --~g~~-~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (443)
T PRK07483        117 --IGQP-QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY-AYREQRAGESDEAYGQRLADELEAKI  192 (443)
T ss_pred             --cCCC-CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc-cccccccCCCHHHHHHHHHHHHHHHH
Confidence              1211 23466653 344433322222211            1123333211 0110             135677666


Q ss_pred             h----hcCcEEEEeeCCC-CcccCCC----HHHHHHHHHHhhhccCCCceEEeeccccccccc--ccCCCccccccCCCC
Q 017569          200 D----ENTICVAAILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP--FLYPDLEWDFRLPLV  268 (369)
Q Consensus       200 ~----~~~~~v~~~~~~~-~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~--~~~~~~~~~~~~~~~  268 (369)
                      .    ++..+|++.-..- ..|.+.|    +++|.++|+++      ++++|+|+++.|+-..  ++.-+   .+.+ ..
T Consensus       193 ~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGfGRtG~~~a~~---~~gv-~P  262 (443)
T PRK07483        193 LELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY------GVLLILDEVMCGMGRTGTLFACE---EDGV-AP  262 (443)
T ss_pred             HhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh------CCEEEEecceeCcccCcHHHHHh---hcCC-CC
Confidence            4    2344555543332 2355533    99999999999      9999999998765321  11100   1112 36


Q ss_pred             cEEEEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhH
Q 017569          269 KSINVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVD  347 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~  347 (369)
                      |.+++  .|.+.+.+ ..|.++.+++ .. +.+.....+..+   ..|..|..  ...++..++|+.+..+++.+ +..+
T Consensus       263 Div~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~h---~~T~~gnp--l~~aaa~a~l~~i~~~~l~~-~~~~  332 (443)
T PRK07483        263 DLVTI--AKGLGAGYQPIGAVLASDR-IY-DAIADGSGFFQH---GHTYLGHA--TACAAALAVQRVIAEDGLLA-NVRA  332 (443)
T ss_pred             Ceeee--hhhhccCccccEEEEEcHH-HH-HHHhcCCCcccc---CCCCCCCH--HHHHHHHHHHHHHHhcCHHH-HHHH
Confidence            77774  67777664 6788887643 21 222111111111   01111111  12344446666666555433 7778


Q ss_pred             HHHHHHHHHHh
Q 017569          348 HKKLSSFFVIH  358 (369)
Q Consensus       348 ~a~~l~~~L~~  358 (369)
                      +.++|++.|++
T Consensus       333 ~g~~l~~~L~~  343 (443)
T PRK07483        333 RGEQLRARLRE  343 (443)
T ss_pred             HHHHHHHHHHH
Confidence            88888888875

>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]

Probab=98.54  E-value=5.6e-07  Score=86.23  Aligned_cols=185  Identities=10%  Similarity=0.040  Sum_probs=121.9

Q ss_pred             CCeEEecCCCcch-HHHHHhhhcceeEEEec--cCC----ccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC
Q 017569          154 KPNIVTGANVQVC-WEKFARYFEVELKEVKL--EEG----YYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       154 ~~~Vi~s~~~h~s-~~~~~~~~G~~v~~v~~--~~~----~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~  220 (369)
                      .|.+|+|+..|.- ...+|+.+|+.-..|..  +.+    .++||.-.+++.|++      +|.+++...|.+.+|..|.
T Consensus       231 aPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDm  310 (838)
T KOG0630|consen  231 APTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDM  310 (838)
T ss_pred             CceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHH
Confidence            5799999999976 44578888987433332  221    259999999999986      4778889999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      +-+|.++|++++     .+|+|.-|- +...+.|..|+. +..- ...+||++++-.-|++.|.-.=+++-|.-+-.  .
T Consensus       311 i~kildi~eaha-----kfWLHasGh-aiAALt~aepnn-il~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~--a  381 (838)
T KOG0630|consen  311 ILKILDICEAHA-----KFWLHASGH-AIAALTCAEPNN-ILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGS--A  381 (838)
T ss_pred             HHHHHHHHHHhh-----heeEeeccc-hhhheeecCccc-chhHHHHHHhhccchhHHHhCCCCCceEEeecccccc--c
Confidence            999999999983     499998763 222222223322 1111 45789999999999988876655554432111  1


Q ss_pred             cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHH
Q 017569          300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       300 ~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                      .   ..|.    +++-  .++ -..++.+|.+++++|..-+.++  ....+.+-+-+.+.
T Consensus       382 a---Safe----sdpi--~re-kLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aS  431 (838)
T KOG0630|consen  382 A---SAFE----SDPI--LRE-KLDALPLWTALQALGGKAIADMIENAFLLCKILFEGAS  431 (838)
T ss_pred             c---hhcc----cChH--HHH-hhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhh
Confidence            0   0111    1211  122 2358999999999998777765  34444444444443

>PRK06148 hypothetical protein; Provisional

Probab=98.51  E-value=1.7e-05  Score=86.22  Aligned_cols=251  Identities=10%  Similarity=-0.012  Sum_probs=137.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-.... .+  ..+.+.++.+.|.+++..+.     ....++++|+||+..|++.+|..      
T Consensus       638 H~hp~v~~Ai~~q~~~l~~~~-~~--~~~~~~~lAe~L~~~~p~~~-----~~v~f~nSGsEA~e~AlklAr~~------  703 (1013)
T PRK06148        638 HAHPRVVAAAARQAARLNTNT-RY--LHDAIVAYAERLTATLPDGL-----TVAFFVNSGSEANSLALRLARAH------  703 (1013)
T ss_pred             CCCHHHHHHHHHHHhhcCCcC-Cc--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHh------
Confidence            345888888887776421111 11  23334456666777764321     24789999999999999999874      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhh--------c----ceeEEEeccCC---ccc-cC-------HHHHHHHHh--
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYF--------E----VELKEVKLEEG---YYV-MN-------PVKAVELVD--  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~--------G----~~v~~v~~~~~---~~~-~d-------~~~L~~~i~--  200 (369)
                       .|    +.+||.-.. .|-....++...        +    -.+..++....   .+. -|       .+.+++.+.  
T Consensus       704 -tG----r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  778 (1013)
T PRK06148        704 -TG----QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAM  778 (1013)
T ss_pred             -cC----CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhh
Confidence             12    345555443 333222111111        1    01222221100   011 01       244555553  


Q ss_pred             ----hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc-c--ccCCCccccccCCCCc
Q 017569          201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-P--FLYPDLEWDFRLPLVK  269 (369)
Q Consensus       201 ----~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~--~~~~~~~~~~~~~~~D  269 (369)
                          +++.+|++--.....|.+-+    ++++.++|+++      |+.+|+|+++.|+-. .  ++.-+ .++  + ..|
T Consensus       779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~------g~llI~DEVqtGfGRtG~~~~a~e-~~g--v-~PD  848 (1013)
T PRK06148        779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA------GGVCIADEVQVGFGRVGSHWWAFE-TQG--V-VPD  848 (1013)
T ss_pred             hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEEecccCCCCCCCcchhhh-hcC--C-Ccc
Confidence                23566666655555566654    99999999999      999999999866422 1  11111 011  2 468


Q ss_pred             EEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHH
Q 017569          270 SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHK  349 (369)
Q Consensus       270 si~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a  349 (369)
                      .+++  .|.+++....|.++.+++ .. +.+.....+.    .++  .|.. . ..++..++|+.+..+++.+ +..++.
T Consensus       849 ivt~--gK~lggG~Plgav~~~~e-i~-~~~~~g~~~~----~Tf--~gnp-l-a~aaa~a~L~~i~~e~l~~-~~~~~G  915 (1013)
T PRK06148        849 IVTM--GKPIGNGHPMGAVVTTRE-IA-DSFDNGMEYF----NTF--GGNP-V-SCAIGLAVLDIIEDEDLQR-NALEIG  915 (1013)
T ss_pred             eeee--cccccCCcceEEEEEcHH-HH-hhccCCCccc----cCC--CCCH-H-HHHHHHHHHHHHhhccHHH-HHHHHH
Confidence            8774  788877788899988642 21 2221100011    111  1221 2 2344446677776665544 777888


Q ss_pred             HHHHHHHHhc
Q 017569          350 KLSSFFVIHS  359 (369)
Q Consensus       350 ~~l~~~L~~~  359 (369)
                      ++|++.|+++
T Consensus       916 ~~l~~~L~~l  925 (1013)
T PRK06148        916 NYLLAGLREL  925 (1013)
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>PRK06149 hypothetical protein; Provisional

Probab=98.51  E-value=2.3e-05  Score=85.02  Aligned_cols=251  Identities=10%  Similarity=-0.093  Sum_probs=135.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+.......   ........++.+.+++++..+.     ....++++|+|||..|++.++..       
T Consensus       600 ~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~elae~L~~~~p~~~-----~~v~f~~SGsEA~e~AlklAr~~-------  664 (972)
T PRK06149        600 GHPRLAAAAARQWSLLNTNS---RFHYAAVAEFSERLAALAPDGL-----DTVFLVNSGSEANDLAIRLAWAA-------  664 (972)
T ss_pred             CCHHHHHHHHHHHHhccccc---cccCHHHHHHHHHHHHhCCCCc-----CEEEEeCCchHHHHHHHHHHHHh-------
Confidence            45778888877765432221   1122334455666777763211     24899999999999999998764       


Q ss_pred             cCCCCCCCeEEecCC-CcchHHHHHhhhc----------c---eeEEEeccC-Cc--cc-cC-----HHHHHHHHh----
Q 017569          148 QGKPYDKPNIVTGAN-VQVCWEKFARYFE----------V---ELKEVKLEE-GY--YV-MN-----PVKAVELVD----  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G----------~---~v~~v~~~~-~~--~~-~d-----~~~L~~~i~----  200 (369)
                      .|    +.+|+.... .|-....+....+          .   .+..++... ..  +. .+     .+++++.++    
T Consensus       665 tg----r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  740 (972)
T PRK06149        665 SG----RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDA  740 (972)
T ss_pred             cC----CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhh
Confidence            12    345555443 4422111111100          0   123333221 00  11 11     244444442    


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-cccc-ccCCCCcEEE
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWD-FRLPLVKSIN  272 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~-~~~~~~Dsi~  272 (369)
                        +++.+|++.-.....|.+.+    +++|.++|+++      |+++|+|+++.|+-.  .... ..+. +.+ ..|.++
T Consensus       741 ~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~------g~llI~DEV~tGfGR--tG~~~~a~e~~gv-~PDivt  811 (972)
T PRK06149        741 SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR------GGVCIADEVQVGYGR--LGHYFWGFEQQGV-VPDIIT  811 (972)
T ss_pred             cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEEeehhcCCc--cCccchhhhhcCC-CCCEEE
Confidence              23456666555555577766    99999999999      999999999854322  1110 0111 112 468777


Q ss_pred             EcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHH
Q 017569          273 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLS  352 (369)
Q Consensus       273 ~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l  352 (369)
                        ..|.+++....|.++++++ .. +.+.. ..+..+   ++   +..+. ..++..++|..+..+++.+ +..++.+||
T Consensus       812 --~gK~lg~G~Pl~av~~~~~-i~-~~~~~-~~~~~s---T~---~gnP~-~~aaala~L~~i~~e~l~~-~~~~~G~~l  878 (972)
T PRK06149        812 --MAKGMGNGHPLGAVITRRE-IA-EALEA-EGYFFS---ST---GGSPV-SCRIGMAVLDVLREEKLQE-NARRVGDHL  878 (972)
T ss_pred             --ecccccCCeeeEEEEEcHH-HH-hhhcc-CCcccC---CC---CCCHH-HHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence              4788776677788888653 21 22211 111111   11   11112 2344446666666665443 677777888


Q ss_pred             HHHHHhc
Q 017569          353 SFFVIHS  359 (369)
Q Consensus       353 ~~~L~~~  359 (369)
                      ++.|+++
T Consensus       879 ~~~L~~l  885 (972)
T PRK06149        879 KARLEAL  885 (972)
T ss_pred             HHHHHHH
Confidence            8888764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.48  E-value=6.4e-05  Score=75.07  Aligned_cols=269  Identities=8%  Similarity=-0.085  Sum_probs=137.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.-..... .....+...++.+.+.+++.............++++|+||+-.|++.++..+..+  
T Consensus        80 h~~p~i~~Ai~~q~~~l~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~--  156 (472)
T PRK08742         80 HAEPRIGAAIAAQAGELEQVML-AGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNR--  156 (472)
T ss_pred             CCCHHHHHHHHHHHHhCCCccc-cccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhc--
Confidence            4467788888877654221111 1112233446666777776421000001248999999999999999998754321  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCCccc------------cCHHHHHHHHhh
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYV------------MNPVKAVELVDE  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~------------~d~~~L~~~i~~  201 (369)
                        |.. .+.+|+.-.. .|-...-++...|.            ++..+|... .++            -+++.+++.++.
T Consensus       157 --g~~-~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (472)
T PRK08742        157 --GEH-RRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPD-AYLAEPGQSAEDYALQAADALQALFEQ  232 (472)
T ss_pred             --CCC-CCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCC-ccccccCCCHHHHHHHHHHHHHHHHHh
Confidence              211 1345655444 44333223222221            123344321 011            135677777753


Q ss_pred             ---cCcEEEEee-CCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          202 ---NTICVAAIL-GSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       202 ---~~~~v~~~~-~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                         +..+|++.- .....|.+.    -++++.++|+++      |+++|+|+++.|+-.  ...-..++..-...|.+++
T Consensus       233 ~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~------gillI~DEV~TGfGR--tG~~~a~e~~gv~PDiv~~  304 (472)
T PRK08742        233 SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH------GAFLIADEIATGFGR--TGTLFACEQAGVMPDLLCL  304 (472)
T ss_pred             CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCC--CccchHHHhcCCCCCEEEE
Confidence               345555543 244546542    399999999999      999999999876532  1100011111114788884


Q ss_pred             cCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHH
Q 017569          274 SGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLS  352 (369)
Q Consensus       274 ~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l  352 (369)
                        .|.+++.+ ..|.++.+++ .. +.+..... .+...-..|..|..  ...++..++|+.+..+++.+ +..++.++|
T Consensus       305 --gKgl~gG~~Plaav~~~~e-i~-~~~~~~~~-~~~~~h~~T~~gnp--l~~Aaa~a~L~~i~~~~l~~-~~~~~g~~l  376 (472)
T PRK08742        305 --SKGLTGGFLPLSAVLATQQ-LY-DAFLDDSR-ERAFLHSHSYTGNP--LACAAALATLDIFADDDVIA-RNQPTAARM  376 (472)
T ss_pred             --cccccCCCCCcceeeccHH-HH-HHhhccCc-cCccCcCCCCCccH--HHHHHHHHHHHHHHHCCHHH-HHHHHHHHH
Confidence              68876664 6777777643 21 12111000 00000011111211  12344446666676666543 566667777


Q ss_pred             HHHHHh
Q 017569          353 SFFVIH  358 (369)
Q Consensus       353 ~~~L~~  358 (369)
                      ++.++.
T Consensus       377 ~~~~~~  382 (472)
T PRK08742        377 TQLAAQ  382 (472)
T ss_pred             HHHHHH
Confidence            766554

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.47  E-value=4.7e-05  Score=75.82  Aligned_cols=255  Identities=10%  Similarity=-0.001  Sum_probs=134.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+........ .....+.+.++.+.+.+++.....  ......++++|+||+..|++.++..      
T Consensus        74 H~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~~~--~~~~~f~~~SGsEAve~AlklAr~~------  144 (459)
T PRK06931         74 HNHPDVLQSIQDVLTSGLPLHT-LDLTTPLKDAFSEYLLSLLPGQGK--EYCLQFTGPSGADAVEAAIKLAKTY------  144 (459)
T ss_pred             CCCHHHHHHHHHHHhhhccccc-cccCCHHHHHHHHHHHHhCCCccc--cceEEEeCCCcHHHHHHHHHHHHHh------
Confidence            4467888888877764321111 112234555667778777643210  0012345589999999999998864      


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc------------ceeEEEeccCCccc--------cCHHHH----HHHHhh
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYV--------MNPVKA----VELVDE  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G------------~~v~~v~~~~~~~~--------~d~~~L----~~~i~~  201 (369)
                       .|    +.+|+.-.. .|-...-++...|            -++..+|... .++        -+.+.+    ++.+++
T Consensus       145 -tg----r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (459)
T PRK06931        145 -TG----RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPH-EYRCPLGIGGEAGVKALTYYFENFIED  218 (459)
T ss_pred             -cC----CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCc-cccccccCCchhHHHHHHHHHHHHHHh
Confidence             12    456665444 3433322222211            1234454321 011        122333    333331


Q ss_pred             ------cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEE
Q 017569          202 ------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       202 ------~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi  271 (369)
                            +..+|++--.....|.+.|    ++++.++|+++      |+++++|+++.|+-.  ...-..+...-...|.+
T Consensus       219 ~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~------g~LlI~DEV~tGfGR--tG~~~a~~~~gv~PDiv  290 (459)
T PRK06931        219 VESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH------GILLIVDEVQAGFAR--TGKMFAFEHAGIEPDII  290 (459)
T ss_pred             hhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecchhcCCc--CchHHHhhhcCCCCCEE
Confidence                  2456666544444455532    99999999999      999999999876532  00000111111146888


Q ss_pred             EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHH
Q 017569          272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKL  351 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~  351 (369)
                      ++  .|.+.+....|+++.++.  . ..+.  ....     ..|..|..  ...++..++|+.+..+++.+ +..++.++
T Consensus       291 t~--gK~l~gG~Pi~av~~~~~--~-~~~~--~~~~-----~~T~~gnp--la~aaala~L~~l~~~~l~~-~~~~~G~~  355 (459)
T PRK06931        291 VM--SKAVGGGLPLAVLGIKKE--F-DAWQ--PGGH-----TGTFRGNQ--LAMATGLTTLKILKEENLAQ-NAAERGEW  355 (459)
T ss_pred             Ee--cccccCCcceeeeeeHHH--H-hhcc--CCCC-----CCCCCCCH--HHHHHHHHHHHHHHhCCHHH-HHHHHHHH
Confidence            74  677766677888776532  2 2221  1111     11111221  22344446666666555433 67777778


Q ss_pred             HHHHHHhc
Q 017569          352 SSFFVIHS  359 (369)
Q Consensus       352 l~~~L~~~  359 (369)
                      |++.|+++
T Consensus       356 l~~~L~~l  363 (459)
T PRK06931        356 LKAQLAEL  363 (459)
T ss_pred             HHHHHHHH
Confidence            88877653

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.47  E-value=1.2e-05  Score=78.25  Aligned_cols=260  Identities=12%  Similarity=-0.040  Sum_probs=139.9

Q ss_pred             CChHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ...+.+.+++.+-+++-.+. ...+.....+  ++.+.|+++..-..    ...+.+++|||+|+-.|+..++..|..+ 
T Consensus        60 h~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~--~LA~~L~~~aP~~~----l~~vFf~~sGSeAvEtAlKma~qY~~~~-  132 (449)
T COG0161          60 HGRPEIAEAIKKQLDKLPHVMFGGFTHEPAI--ELAEKLAELAPEGG----LDHVFFTDSGSEAVETALKMALQYWRAR-  132 (449)
T ss_pred             cCCHHHHHHHHHHHHhCCchhhcccCCchHH--HHHHHHHHhCCCCC----ccEEEEeCCchHHHHHHHHHHHHHHHhc-
Confidence            44577888888766553222 1112222222  45566888776221    2358999999999999999999887642 


Q ss_pred             HhcCCCCCCCeEEecC-CCcchHHHHHhhhcc-------------eeEEEeccC-------Cccc----cCHHHHHHHHh
Q 017569          146 KEQGKPYDKPNIVTGA-NVQVCWEKFARYFEV-------------ELKEVKLEE-------GYYV----MNPVKAVELVD  200 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G~-------------~v~~v~~~~-------~~~~----~d~~~L~~~i~  200 (369)
                         |.+. +.++|.-. ..|-...-++...|.             .+..+|...       +.+.    -..++|++.|.
T Consensus       133 ---G~p~-r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~  208 (449)
T COG0161         133 ---GQPQ-RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALIL  208 (449)
T ss_pred             ---CCCc-ceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHH
Confidence               3322 23455433 344444444444331             122333321       0011    23567777776


Q ss_pred             h---cC-cEEEEeeCCCC-cccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc---cccCCCccccccCCCC
Q 017569          201 E---NT-ICVAAILGSTL-TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA---PFLYPDLEWDFRLPLV  268 (369)
Q Consensus       201 ~---~~-~~v~~~~~~~~-tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~---~~~~~~~~~~~~~~~~  268 (369)
                      +   .+ .++++--..-- .|.+-|    ++++.++|++|      |+++|.|++..|+-.   .|-+..  ..   ..-
T Consensus       209 ~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky------~ILlI~DEV~tGFGRTG~~FA~e~--~g---i~P  277 (449)
T COG0161         209 EHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY------GILLIADEVATGFGRTGKMFACEH--AG---IVP  277 (449)
T ss_pred             hcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc------CcEEEeecceeCCCcCchhhhhhh--cC---CCC
Confidence            5   33 33443332223 455533    99999999999      999999998766443   122211  11   135


Q ss_pred             cEEEEcCccCCCCCC-CeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhh
Q 017569          269 KSINVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCV  346 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~  346 (369)
                      |.++  .-|-+.+.+ ..|.++++++ . -+.+... ..-+.+   .+|.  |-+-...++..+.|+.+.++++.+ +..
T Consensus       278 Di~~--~aKGLT~GY~Pl~a~l~~~~-I-~~~~~~~~~~~f~H---G~TY--sghPlacAaAla~L~i~e~e~l~~-~~~  347 (449)
T COG0161         278 DILC--LAKGLTGGYLPLSAVLTSDR-I-YEAFSDGDAGAFMH---GHTY--SGNPLACAAALANLDILEEEDLLE-RVA  347 (449)
T ss_pred             Ceee--ecccccccchhhHhHhhhHH-H-HHHHhcccCCeecc---CCcc--ccCHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence            7777  456654433 3355555442 1 1222221 111111   1121  111112333446666667777766 666


Q ss_pred             HHHHHHHHHHHh
Q 017569          347 DHKKLSSFFVIH  358 (369)
Q Consensus       347 ~~a~~l~~~L~~  358 (369)
                      ++..+|.++|++
T Consensus       348 ~~~~~l~~~L~~  359 (449)
T COG0161         348 EIGAYLQAGLQA  359 (449)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999987

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.47  E-value=2.2e-05  Score=72.25  Aligned_cols=251  Identities=12%  Similarity=-0.004  Sum_probs=134.6

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+-.+.-...  .-......-.+..+.+.++||.+.       ..-++.|.||+-.++..+|......+  
T Consensus        76 chpki~~aLqeq~~kLtls--srafYnd~~~~f~~~vt~lf~~~k-------vlpmnTGaEa~Eta~KLaR~wgy~~K--  144 (427)
T KOG1402|consen   76 CHPKIIKALQEQADKLTLS--SRAFYNDVLGEFAEYVTKLFGYDK-------VLPMNTGAEAVETACKLARKWGYRKK--  144 (427)
T ss_pred             CCHHHHHHHHHHHhHhhhh--hHHHhhhhHHHHHHHHHHhcCcce-------eeecccchhHHHHHHHHHHHHHHhhc--
Confidence            3455666666554321111  001122333455567999999986       67788889999999999886422211  


Q ss_pred             cCCCCCCCeEEecC-CCcchHHHHH-------hhhcce------eEEEeccCCccccCHHHHHHHHhhc-CcEEEEeeCC
Q 017569          148 QGKPYDKPNIVTGA-NVQVCWEKFA-------RYFEVE------LKEVKLEEGYYVMNPVKAVELVDEN-TICVAAILGS  212 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~-~~h~s~~~~~-------~~~G~~------v~~v~~~~~~~~~d~~~L~~~i~~~-~~~v~~~~~~  212 (369)
                       +-+..+.+++... ..|--...+.       .+.|.+      +..||.+      |.++|+.++++. ...+++.--.
T Consensus       145 -~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~------d~eale~~l~~~~vaaFivEPIQ  217 (427)
T KOG1402|consen  145 -NIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG------DAEALEVALKSPNVAAFIVEPIQ  217 (427)
T ss_pred             -cCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC------CHHHHHHHhcCCCeeEEEeeccc
Confidence             1111122333322 2232111110       111221      4444443      679999999763 4455555556


Q ss_pred             CCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC-CCCeEE
Q 017569          213 TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV-YAGVGW  287 (369)
Q Consensus       213 ~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~-p~g~g~  287 (369)
                      -..|.+-|    ++++.++|.+|      +++++.|+.+.|....  ..-...+..-...|.+.  ..|.+.+ -+..+.
T Consensus       218 GEaGVvvP~~GYL~~vreLCtky------nvl~I~DEvQTGl~RT--Gk~la~d~env~PDivi--lgKalSGG~~Pvsa  287 (427)
T KOG1402|consen  218 GEAGVVVPPPGYLKKVRELCTKY------NVLLIADEVQTGLART--GKLLACDYENVRPDIVI--LGKALSGGVYPVSA  287 (427)
T ss_pred             cccceEeCCchhHHHHHHHHHhh------cEEEEehhhhhccccc--CcEEEeehhhcCCCeEE--EeccccCCeeeeEE
Confidence            66677643    99999999999      9999999999875431  11111222222456555  4566543 344455


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++.+. ... .      |-.+.+      ||-.+..++++.+++..+..---+++  |+..+-..|+.+|+++.
T Consensus       288 vl~~~~-im~-~------~~pgeH------gsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~  348 (427)
T KOG1402|consen  288 VLADDD-IML-N------IKPGEH------GSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQ  348 (427)
T ss_pred             EEecHH-HHh-c------cCCCcc------ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            554332 211 1      111111      22223334555544444433222333  89999999999998754

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.44  E-value=6e-06  Score=74.93  Aligned_cols=157  Identities=14%  Similarity=0.057  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCe-EEecCCCcchHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN-IVTGANVQVCWEKF  170 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~-Vi~s~~~h~s~~~~  170 (369)
                      +-..||+.    +++.||.+...   ...-+ .+||.|+..++...+++             +++ +++...-|-.++..
T Consensus        66 GRdtLe~v----yA~vf~aE~a~---VRpq~-isGTHAI~~aLfg~LRp-------------gDell~i~G~PYDTLeev  124 (416)
T COG4100          66 GRDTLERV----YAQVFGAEAAL---VRPQI-ISGTHAIACALFGILRP-------------GDELLYITGSPYDTLEEV  124 (416)
T ss_pred             chhHHHHH----HHHHhccccce---eeeee-ecchhHHHHHHHhccCC-------------CCeEEEecCCcchhHHHH
Confidence            44445544    89999998621   11223 36799998888887653             344 33333334444444


Q ss_pred             Hh----------hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee----CCCCcccCCCHHHHHHHHHHhhhccC
Q 017569          171 AR----------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTKKNEETG  236 (369)
Q Consensus       171 ~~----------~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~l~~I~~l~~~~~~~~~  236 (369)
                      .-          -+|+..+-||+..+ +++|.+.++.++.++|++|.+.-    ..-|+-.+++++++.++.|+.|.   
T Consensus       125 IG~rg~~~gSL~dfgi~Y~~v~Lt~~-gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inp---  200 (416)
T COG4100         125 IGLRGEGQGSLKDFGIKYKAVPLTAD-GKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINP---  200 (416)
T ss_pred             hccCCCCcccHHHhCcceeecccccC-CcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCC---
Confidence            32          34566788998875 89999999999999999887653    34455566888888898888755   


Q ss_pred             CCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC
Q 017569          237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (369)
Q Consensus       237 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~  281 (369)
                       ++.+.||.|||.++-    ..-+.   ..++|.+..|.=|.-++
T Consensus       201 -n~ivFVDNCYGEFvE----~~EPt---~vGaDliAGSLIKNpGG  237 (416)
T COG4100         201 -NVIVFVDNCYGEFVE----EKEPT---HVGADLIAGSLIKNPGG  237 (416)
T ss_pred             -CEEEEEeccchhhhh----ccCcc---ccchhhhccceeeCCCC
Confidence             899999999998654    11122   23899999888887543

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.35  E-value=6.6e-05  Score=74.24  Aligned_cols=266  Identities=11%  Similarity=-0.034  Sum_probs=127.4

Q ss_pred             CChHHHH--HHHHHHhccCCC-CCCC-CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH
Q 017569           67 WMEPECD--KLVMASINKNYV-DMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        67 ~~~~~v~--~~~~~~~~~n~~-~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (369)
                      ...|.+.  +++.+.+++-.. .... ......+ .++.+.++++.+.+.    .....++++|+||+..|++.++....
T Consensus        54 h~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~----~~~v~f~~sGsEAve~AlklAr~~t~  128 (431)
T TIGR03251        54 MNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAM-ARFVDTFARVLGDPA----LPHLFFIEGGALAVENALKTAFDWKS  128 (431)
T ss_pred             CCChhhhHHHHHHHHHHHhhhcccccCCCCCHHH-HHHHHHHHHhcCCCC----cCEEEEeCCcHHHHHHHHHHHHHHhh
Confidence            3346666  677766653211 1111 1112222 234445666542111    12478999999999999999986421


Q ss_pred             HHHHhcCCCC-CCCeEEecC-CCcchHHHHHhhhcce-eE----------EE-------eccCCcc-------ccCHHHH
Q 017569          143 QKRKEQGKPY-DKPNIVTGA-NVQVCWEKFARYFEVE-LK----------EV-------KLEEGYY-------VMNPVKA  195 (369)
Q Consensus       143 ~~~~~~g~~~-~~~~Vi~s~-~~h~s~~~~~~~~G~~-v~----------~v-------~~~~~~~-------~~d~~~L  195 (369)
                      ......|.+. .+.+|+.-. ..|-...-++...|-. ..          .+       |.+.+..       .-+++++
T Consensus       129 ~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~  208 (431)
T TIGR03251       129 RHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQA  208 (431)
T ss_pred             cchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHH
Confidence            1001122111 123555444 3443333333222211 00          01       1110000       0134556


Q ss_pred             HHHHh---hcCcEEEEeeCCCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCC
Q 017569          196 VELVD---ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLV  268 (369)
Q Consensus       196 ~~~i~---~~~~~v~~~~~~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~  268 (369)
                      ++.+.   +++.+|++.-.....|.+    +.+++|.++|+++      |+.+++|+++.|+-..  ..-..++..-...
T Consensus       209 ~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tG~Grt--G~~~a~~~~gv~P  280 (431)
T TIGR03251       209 RAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH------DALLIFDEVQTGVGLT--GTAWAYQQLGVQP  280 (431)
T ss_pred             HHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecchhccCcc--chHHHHHhcCCCC
Confidence            66664   356777777666666765    4599999999999      9999999998864321  0000111111147


Q ss_pred             cEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHH
Q 017569          269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDH  348 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~  348 (369)
                      |.+++  .|.+   +.+|++. +++  +.........+....  ..|..++  ....++..++|+.+..+++.+ +..++
T Consensus       281 Di~~~--gK~~---~~~g~~~-~~~--i~~~~~~~~~~~~~~--~~T~~gn--pl~~aaa~a~L~~l~~~~l~~-~~~~~  347 (431)
T TIGR03251       281 DIVAF--GKKT---QVCGIMA-GRR--VDEVADNVFAVPSRL--NSTWGGN--LVDMVRATRILEIIEEERLVD-NARVQ  347 (431)
T ss_pred             CEEEe--cccC---ccceEEe-cch--HHHhhhhcccCcccc--CCCCCCC--HHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence            88875  4443   2345553 332  100000000011110  1111122  222444456677776666533 56666


Q ss_pred             HHHHHHHHHh
Q 017569          349 KKLSSFFVIH  358 (369)
Q Consensus       349 a~~l~~~L~~  358 (369)
                      .++|.++|++
T Consensus       348 g~~l~~~L~~  357 (431)
T TIGR03251       348 GAHLLARLHE  357 (431)
T ss_pred             HHHHHHHHHH
Confidence            6777777665

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.26  E-value=0.00025  Score=70.54  Aligned_cols=262  Identities=10%  Similarity=-0.053  Sum_probs=129.8

Q ss_pred             CChHHHHHHHHHH--hccCCCCC-CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMAS--INKNYVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~--~~~n~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|.+.+++.+.  ...-...+ ...+...++.+.+.+.+.+++.-+.     ....++++|+||+-.|++.++..+..
T Consensus        74 h~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~-----~~v~f~~SGsEAvE~AlKlAr~~~~~  148 (464)
T TIGR00699        74 YNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQ-----DQVWTGMSGSDANELAFKAAFMYYRS  148 (464)
T ss_pred             CCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCc-----CEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence            4457777777763  22211111 1122233344444443444543211     24899999999999999999875421


Q ss_pred             H-HHh----cCCC---------CC--CCeEEecCC-CcchHHHHHhhhcc-----------eeEEEeccCCcc-------
Q 017569          144 K-RKE----QGKP---------YD--KPNIVTGAN-VQVCWEKFARYFEV-----------ELKEVKLEEGYY-------  188 (369)
Q Consensus       144 ~-~~~----~g~~---------~~--~~~Vi~s~~-~h~s~~~~~~~~G~-----------~v~~v~~~~~~~-------  188 (369)
                      . |..    .|.+         ..  +.+||.-.. .|-....++...|-           .+..+|.....+       
T Consensus       149 ~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~  228 (464)
T TIGR00699       149 KQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVK  228 (464)
T ss_pred             cCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccc
Confidence            1 000    0000         01  125665444 45443333333221           112222211000       


Q ss_pred             ------ccCHHHHHHHHhh---cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          189 ------VMNPVKAVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       189 ------~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                            .-+++.|++++++   +..+|++.-.....|.+-|    +++|.++|+++      |+++++|+++.|+-.  .
T Consensus       229 ~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~------g~lLI~DEV~tGfGr--t  300 (464)
T TIGR00699       229 ENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH------NVAFIVDEVQTGVGA--T  300 (464)
T ss_pred             cchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeeeeeCCCC--C
Confidence                  0145677787753   3566776666666677766    99999999999      999999999865422  1


Q ss_pred             CCCcccc-ccC-CCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHH
Q 017569          256 YPDLEWD-FRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       256 ~~~~~~~-~~~-~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~  333 (369)
                      ..-..+. +.+ ...|.+++  .|.+++   .|+++.+ + .+..   ....+.++   ++    +-+....++..++|+
T Consensus       301 G~~fa~e~~gv~~~PDi~t~--gK~lg~---gG~~~~~-~-~~~~---~~~~~~~~---T~----~gnp~~~aaa~a~L~  363 (464)
T TIGR00699       301 GKFWAHEHWNLDDPPDMVTF--SKKFQT---AGYFFHD-P-AFRP---NKPYRQFN---TW----MGDPSRALILREIIQ  363 (464)
T ss_pred             cchhHHHhcCCCCCCCEEEe--hhhhcc---CCccccc-h-hccC---CCCccccc---CC----CCCHHHHHHHHHHHH
Confidence            1000111 112 14788774  677631   1333322 1 1100   00111111   11    111122344445666


Q ss_pred             HhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          334 RLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       334 ~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      .+..+++.+ +..++.++|++.|+++
T Consensus       364 ~l~~~~l~~-~~~~~g~~l~~~L~~l  388 (464)
T TIGR00699       364 EIKRKDLLE-NVAHVGDYLYTGLEDL  388 (464)
T ss_pred             HHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence            665555433 6667777888888764

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.26  E-value=8.3e-05  Score=73.77  Aligned_cols=267  Identities=10%  Similarity=-0.027  Sum_probs=128.1

Q ss_pred             CChHHHHH--HHHHHhccCCC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDK--LVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~--~~~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ..+|.+.+  ++.+.++.-.. .........+...++.+.+.++.+-+.    .....++++|+||+..|++.++..+..
T Consensus        61 h~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~----~~~v~f~~SGsEAve~AlKlAr~~~~~  136 (443)
T PRK08297         61 MNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPE----LPHLFFVDGGALAVENALKVAFDWKSR  136 (443)
T ss_pred             CCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCC----CCEEEEeCchHHHHHHHHHHHHHHhhc
Confidence            34566777  77766643111 000001112223345555666653111    134899999999999999999875321


Q ss_pred             HHHhcCCC-CCCCeEEecCC-CcchHHHHHhhhcce-----------eEEEeccC-------Cc----c---ccCHHHHH
Q 017569          144 KRKEQGKP-YDKPNIVTGAN-VQVCWEKFARYFEVE-----------LKEVKLEE-------GY----Y---VMNPVKAV  196 (369)
Q Consensus       144 ~~~~~g~~-~~~~~Vi~s~~-~h~s~~~~~~~~G~~-----------v~~v~~~~-------~~----~---~~d~~~L~  196 (369)
                      ++...|.+ ..+.+|+.-.. .|-...-++...|..           ...+|...       .+    -   .-++++++
T Consensus       137 ~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (443)
T PRK08297        137 KNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQAR  216 (443)
T ss_pred             cccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHH
Confidence            11111210 11345665443 443333333222211           00011100       00    0   01345666


Q ss_pred             HHHh---hcCcEEEEeeCCCCcccC----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCC
Q 017569          197 ELVD---ENTICVAAILGSTLTGEF----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLV  268 (369)
Q Consensus       197 ~~i~---~~~~~v~~~~~~~~tG~~----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~  268 (369)
                      +.+.   +++.+|++.-.....|.+    +.+++|.++|+++      |+++++|+++.|+-.  ...-..+. +.+ ..
T Consensus       217 ~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~------g~llI~DEV~tGfGR--tG~~~a~~~~gv-~P  287 (443)
T PRK08297        217 AAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH------DALLIFDEVQTGVGL--TGTAWAYQQLGV-RP  287 (443)
T ss_pred             HHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--cchHHHHHhcCC-CC
Confidence            7775   345667666555555655    4599999999999      999999999876422  00000001 112 46


Q ss_pred             cEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHH
Q 017569          269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDH  348 (369)
Q Consensus       269 Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~  348 (369)
                      |.+++  .|.+  |. +|++ ++++ . ..... . .+........|..+..  ....+..++|..+..+++.+ +..++
T Consensus       288 Div~~--gK~l--~~-~a~l-~~~~-i-~~~~~-~-~~~~~~~~~~T~~gnp--l~~aaa~a~L~~l~~~~l~~-~~~~~  354 (443)
T PRK08297        288 DIVAF--GKKT--QV-CGIM-AGRR-V-DEVED-N-VFAVSSRINSTWGGNL--VDMVRARRILEVIEEDGLVE-NAARQ  354 (443)
T ss_pred             CEEEe--cccc--cc-ccee-cchH-H-HHhhh-h-hccCccccCCCCCccH--HHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence            88774  6765  22 2444 4332 1 00000 0 0000000011111211  12333445566665554333 77788


Q ss_pred             HHHHHHHHHhc
Q 017569          349 KKLSSFFVIHS  359 (369)
Q Consensus       349 a~~l~~~L~~~  359 (369)
                      .++|++.|+++
T Consensus       355 g~~l~~~L~~l  365 (443)
T PRK08297        355 GEYLLARLEEL  365 (443)
T ss_pred             HHHHHHHHHHH
Confidence            88888888764

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.20  E-value=0.00056  Score=64.92  Aligned_cols=203  Identities=11%  Similarity=-0.055  Sum_probs=115.6

Q ss_pred             CChHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      +..|++.+++.+-++.-.+.   +...+ ..++++.    +.+..+-..    ...+.++++|||||..|+..+|.....
T Consensus        72 hanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~----l~~~~~~~~----~~rvff~nsGTeAne~ALK~Ark~~~~  142 (433)
T KOG1401|consen   72 HANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEV----LSAVLGKGS----AERVFFCNSGTEANETALKFARKFTGK  142 (433)
T ss_pred             CCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHH----HHhcccCCC----ccEEEEecCCcHHHHHHHHHHHHhhcc
Confidence            44577777777655442211   11112 3333333    444443221    234899999999999999999875321


Q ss_pred             HHHhcCCCCCCCeEEe-cCCCcchHHHHHhhhcceeEEEeccC---C---ccccCHHHHHHHHhhcC---cEEEEeeCCC
Q 017569          144 KRKEQGKPYDKPNIVT-GANVQVCWEKFARYFEVELKEVKLEE---G---YYVMNPVKAVELVDENT---ICVAAILGST  213 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G~~v~~v~~~~---~---~~~~d~~~L~~~i~~~~---~~v~~~~~~~  213 (369)
                      +     .+..+..+|. -...|--..-++...+.....+|.++   +   ---=|+.+|++.++...   .+|++--..-
T Consensus       143 ~-----~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqG  217 (433)
T KOG1401|consen  143 K-----HPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQG  217 (433)
T ss_pred             c-----CCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccC
Confidence            1     0111223544 44455444444443333222222211   0   00116899999998754   5666666655


Q ss_pred             CcccC--CC--HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          214 LTGEF--ED--VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       214 ~tG~~--~~--l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      ..|.+  +|  +..|.++|+++      ++.+|.|+++-|+..  +.+.+.+..--...|.+|  ..|.+.+....|...
T Consensus       218 aGG~~p~~peFl~~L~k~C~~~------~vl~I~DEV~tG~gR--~g~~~a~e~~~~~PDI~t--~aK~L~gGlPigA~~  287 (433)
T KOG1401|consen  218 AGGIIPADPEFLIGLRKECDDN------GVLLIFDEVQTGLGR--LGYGWAQEYFGVTPDITT--VAKPLGGGLPIGATG  287 (433)
T ss_pred             CCCcccCCHHHHHHHHHHHhhc------CceEEeehhhhCccc--cchHHHHHHhCcCCccee--ehhhccCCceeEEEe
Confidence            55554  33  77899999999      999999999887443  222111111112346666  568888888889999


Q ss_pred             EeCC
Q 017569          290 WRTK  293 (369)
Q Consensus       290 ~~~~  293 (369)
                      ++++
T Consensus       288 v~~k  291 (433)
T KOG1401|consen  288 VRDK  291 (433)
T ss_pred             ehHH
Confidence            8764

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.20  E-value=5.9e-05  Score=70.98  Aligned_cols=249  Identities=12%  Similarity=-0.034  Sum_probs=138.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCC--CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMD--EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~--~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ..+|.+.+++.+-+..-++...  ..+-..++    .+.|..++--+-     ....|+++|+|||-++++.++..+.  
T Consensus        66 HchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~----Ae~L~s~~P~~l-----~~vfF~nsGsEANelal~mar~Yt~--  134 (442)
T KOG1404|consen   66 HCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDL----AEALVSKLPGDL-----KVVFFVNSGSEANELALKMARLYTG--  134 (442)
T ss_pred             CCChHHHHHHHHhhhhhEEeeccccCCcHHHH----HHHHHHhCCCCc-----eEEEEecCCchHHHHHHHHHHHhcC--
Confidence            3457666666655432111111  12222233    333555543332     4589999999999999999988632  


Q ss_pred             HHhcCCCCCCCeEE-ecCCCcchHHHHHhhhcceeEEEeccC-----------C--cc--ccC-----H----HHHHHHH
Q 017569          145 RKEQGKPYDKPNIV-TGANVQVCWEKFARYFEVELKEVKLEE-----------G--YY--VMN-----P----VKAVELV  199 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi-~s~~~h~s~~~~~~~~G~~v~~v~~~~-----------~--~~--~~d-----~----~~L~~~i  199 (369)
                               .-.+| .....|-....++.+.|.....-+...           +  .+  .=+     .    +++++.|
T Consensus       135 ---------~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i  205 (442)
T KOG1404|consen  135 ---------NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLI  205 (442)
T ss_pred             ---------CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHH
Confidence                     12344 445555555555555444433222211           0  00  000     1    3334444


Q ss_pred             hh----cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCc
Q 017569          200 DE----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVK  269 (369)
Q Consensus       200 ~~----~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~D  269 (369)
                      ..    ...++++-.-.-..|.+.+    +++..++|+++      |..++.|+++.++-.  ..  .-+.|.  ----|
T Consensus       206 ~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~------Ggl~IaDEVqtGfGR--tG--~~wgfe~h~v~PD  275 (442)
T KOG1404|consen  206 LYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR------GGLFIADEVQTGFGR--TG--HMWGFESHGVVPD  275 (442)
T ss_pred             HhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc------CCEEEehhhhhcccc--cc--ccccccccCCCcc
Confidence            32    2345666666666677754    89999999999      999999999887554  11  112222  11234


Q ss_pred             EEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHH
Q 017569          270 SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHK  349 (369)
Q Consensus       270 si~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a  349 (369)
                      .+|  .-|.++.....|.+++..+ .. ..+.....+..    ++   +..+.. .+..-+.|+.+.++.+++ ++.+..
T Consensus       276 IvT--mAKgiGnG~Pl~AVvtt~E-Ia-~v~~~~~~~fn----Ty---ggnP~a-~avg~aVL~Vikee~LqE-~aa~vG  342 (442)
T KOG1404|consen  276 IVT--MAKGIGNGFPLGAVVTTPE-IA-DVLNQKSSHFN----TY---GGNPVA-CAVGLAVLKVIKEENLQE-NAAEVG  342 (442)
T ss_pred             HHH--HHhhccCCCcceeeecCHH-HH-HHHHhcccccc----cc---CCCchh-HHHHHHHHHHHHHHhHHH-HHHHHH
Confidence            444  5688877788888877542 21 22222221211    11   233333 333347777888777776 888999


Q ss_pred             HHHHHHHHh
Q 017569          350 KLSSFFVIH  358 (369)
Q Consensus       350 ~~l~~~L~~  358 (369)
                      .||.++|.+
T Consensus       343 ~yl~~~l~~  351 (442)
T KOG1404|consen  343 SYLLEKLAA  351 (442)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.18  E-value=0.00032  Score=66.39  Aligned_cols=174  Identities=17%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCeEEecCCCcchHHHHHhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK-----PYDKPNIVTGANVQVCWEKFARY  173 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~-----~~~~~~Vi~s~~~h~s~~~~~~~  173 (369)
                      ++++.+++++|++.+     ..++..  ..++.+..-++...+.-  ...|.     ...+.+.|||.|.|-.....++.
T Consensus        73 e~r~l~a~llgv~~~-----~viv~g--NSSL~lM~d~i~~a~~~--G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~  143 (425)
T PF12897_consen   73 EARELFAELLGVPPE-----NVIVGG--NSSLNLMHDTISRAMLH--GVPGSETPWCKEEKVKFLCPVPGYDRHFAITEH  143 (425)
T ss_dssp             HHHHHHHHHHTS-GG-----GEEE-S--S-HHHHHHHHHHHHHHH----TT-SS-GGGSS--EEEEEES--HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHH-----HEEEec--cchHHHHHHHHHHHHhc--CCCCCCCCchhccCceEEecCCCchHHHHHHHh
Confidence            455669999999973     234333  33332322222221110  01111     12345899999999999999999


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcC--cEEE-EeeCCCCcccCCCHHHHHHHHH----HhhhccCCCceEEeecc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENT--ICVA-AILGSTLTGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAA  246 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~--~~v~-~~~~~~~tG~~~~l~~I~~l~~----~~~~~~~~~~~l~vD~a  246 (369)
                      +|++.+.||.+++  -+|++.+++.+.+++  +.|+ +-.-+||+|..-.=+-+.+++.    ..      ++.++-|.|
T Consensus       144 ~Giemi~VpM~~d--GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~------DFRI~WDNA  215 (425)
T PF12897_consen  144 FGIEMIPVPMTED--GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP------DFRIFWDNA  215 (425)
T ss_dssp             CT-EEEEEEEETT--EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST------T-EEEEE-T
T ss_pred             hCcEEEecCCCCC--CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc------CeEEEeecC
Confidence            9999999999876  689999999997654  4444 4456899999855444444443    34      899999999


Q ss_pred             cccccccccCC--Ccc-ccc-------cCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          247 SGGFIAPFLYP--DLE-WDF-------RLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       247 ~~~~~~~~~~~--~~~-~~~-------~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      |....+  ...  ... .++       .-+.-=.+..|+.|.-+.+.|.+++...
T Consensus       216 Y~vHhL--~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS  268 (425)
T PF12897_consen  216 YAVHHL--YDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAAS  268 (425)
T ss_dssp             TTT-BS--SSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-
T ss_pred             ceEeec--cccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecC
Confidence            986554  111  110 011       0112223455788887777777777654

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.13  E-value=9.6e-05  Score=67.45  Aligned_cols=233  Identities=12%  Similarity=0.035  Sum_probs=149.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH-HHHHHHHHHHHhcCCCCCCCeEEec----CCCcchHHHHHhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL-AFKRKWQQKRKEQGKPYDKPNIVTG----ANVQVCWEKFARY  173 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~-~~~~~~~~~~~~~g~~~~~~~Vi~s----~~~h~s~~~~~~~  173 (369)
                      -+...++.+.|+..++     +.+.++ -.+|+..++ .+-.+...          +-+|+.-    ...||+++.-+++
T Consensus       115 ~il~l~~~iVGA~e~E-----vavmNs-LTvNlh~Ll~sFyKPTek----------R~KILlE~kaFPSDhYAiesQ~~l  178 (465)
T KOG3846|consen  115 PILPLLAPIVGAQENE-----VAVMNS-LTVNLHSLLISFYKPTEK----------RFKILLEKKAFPSDHYAIESQCKL  178 (465)
T ss_pred             hhhhhhhhhccCCchh-----hhhHhh-hhhHHHHHHHHhcCCcch----------hhhhhhccCCCCchHHHHHhhhhh
Confidence            4556689999998632     444444 333433333 33222111          2245432    2358889999999


Q ss_pred             hccee----EEEeccCCccccCHHHHHHHHhhc---CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          174 FEVEL----KEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       174 ~G~~v----~~v~~~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      -|+.+    +.|...+..-.+..+++.+.|+++   ..+|..+.....||..-|+.+|...-+..      |+++=.|-|
T Consensus       179 hG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~k------gc~VGfDLA  252 (465)
T KOG3846|consen  179 HGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFK------GCLVGFDLA  252 (465)
T ss_pred             cCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCC------CcEechhhh
Confidence            89873    444444434577788888888764   35666778889999999999999666666      999999988


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCC-CeEEEEEeCCCCcccccccccCccCCCCC-C----------c
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRTKDDLPDELVFHINYLGSDQP-T----------F  314 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y~~~~~~-~----------~  314 (369)
                      ++.+-.|       ..+-.-++|+.++.+.|++.++. |.|.+.+..+.. ......-+.|.++..+ .          +
T Consensus       253 HAvgNVp-------L~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~-~~~~prl~GWwgh~~s~RF~Mdnvl~lip  324 (465)
T KOG3846|consen  253 HAVGNVP-------LQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHT-KESLPRLAGWWGHDPSKRFQMDNVLELIP  324 (465)
T ss_pred             hhhcCCc-------eEEeecCCceEEEeeecccccCCCccceeeeehhhh-cchhhHHhhhccCCcchhhhhccccccCc
Confidence            8765442       22223489999999999998755 446666655422 2233334567665421 0          1


Q ss_pred             cccC----CcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          315 TLNF----SKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       315 ~l~~----tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .-.|    ..+.....++..+|+.+..-.+.++  |..-++.|+...++.+-.
T Consensus       325 Ga~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g  377 (465)
T KOG3846|consen  325 GALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKG  377 (465)
T ss_pred             cccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcc
Confidence            1112    2334456788888888888778877  888899999888876533

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.85  E-value=0.0016  Score=59.84  Aligned_cols=270  Identities=10%  Similarity=0.001  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHhccCCCCCCCC--cchHHHHHHHHHHHHHHhCCCCCC--CCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           70 PECDKLVMASINKNYVDMDEY--PVTTELQNRCVNMIAHLFNTPVAD--DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~--~~~~~le~~~~~~la~l~g~~~~~--~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      |.+.+.=....+....+.+.-  .+...+.+...+.   ++|.+...  ++...++-+.+||.|+..+..-+. .+..  
T Consensus        51 PvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el---~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~-~~~~--  124 (410)
T KOG1412|consen   51 PVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATEL---LLGADSPAIKEDRVFGVQSLSGTGALRIAADFLA-TFYN--  124 (410)
T ss_pred             hhhhhhhhhccCchhccchhccccCchhhhhhhHHH---hcCCCchhhhhccccceeeccccchhhhhHHHHH-Hhcc--
Confidence            555555444455444333322  3556666553322   45665321  122446777799999977654433 2221  


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcce-eEEEec-cCCccccCHHHHHHHHhhcC--cEEEEe-eCCCCcccC--
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKL-EEGYYVMNPVKAVELVDENT--ICVAAI-LGSTLTGEF--  218 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~-v~~v~~-~~~~~~~d~~~L~~~i~~~~--~~v~~~-~~~~~tG~~--  218 (369)
                              +..|++|.|+|........-.|+. +...+. +.++-.+|++.+...|+..|  .++++. ...||||.=  
T Consensus       125 --------~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT  196 (410)
T KOG1412|consen  125 --------KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPT  196 (410)
T ss_pred             --------cceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCC
Confidence                    347999999999988888888844 555555 33446899999999888755  233333 348999963  


Q ss_pred             -CCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCcccccc-CCCC-cEEEEcCccCCC-CCCCeEEEE--Ee
Q 017569          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFR-LPLV-KSINVSGHKYGL-VYAGVGWVV--WR  291 (369)
Q Consensus       219 -~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~-~~~~-Dsi~~~~hK~l~-~p~g~g~l~--~~  291 (369)
                       +-+.+|+++.++.      +.+...|-||-|+...-.. +.+....- ..+. =+++-|.-|.++ -....|.+.  ++
T Consensus       197 ~EQW~qia~vik~k------~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~  270 (410)
T KOG1412|consen  197 REQWKQIADVIKSK------NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVN  270 (410)
T ss_pred             HHHHHHHHHHHHhc------CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEec
Confidence             4488899999998      9999999999887652111 11111111 1233 234445667642 233344433  44


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++.......++-.--.....+++.--|.|-....+.. -.++.--.+.++.+  |..+|...|++.|.+++
T Consensus       271 n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~t-P~lre~W~~sik~MssRI~~MR~aLrd~L~aL~  340 (410)
T KOG1412|consen  271 NPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLST-PELREQWIQSIKTMSSRIKKMRTALRDHLVALK  340 (410)
T ss_pred             ChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4433321111100000000111111122211111111 11222233456666  88899999999888764

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.80  E-value=0.0044  Score=65.68  Aligned_cols=90  Identities=11%  Similarity=-0.020  Sum_probs=55.9

Q ss_pred             HHHHHHHhh--------cCcEEEEeeC-CCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc
Q 017569          193 VKAVELVDE--------NTICVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL  259 (369)
Q Consensus       193 ~~L~~~i~~--------~~~~v~~~~~-~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~  259 (369)
                      +.+++.|++        +..+|++.-. ....|.+-+    ++.|.++|+++      |+++|.|+++.|+..  .....
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~------gilLI~DEV~TGfGR--tG~~f  638 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSR------KIPVIFDEVFTGLWR--LGVES  638 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeecccCCCc--ccchh
Confidence            556676652        2344444432 344466532    89999999999      999999999887643  11111


Q ss_pred             cccccCCCCcEEEEcCccCCCCCC-CeEEEEEeC
Q 017569          260 EWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT  292 (369)
Q Consensus       260 ~~~~~~~~~Dsi~~~~hK~l~~p~-g~g~l~~~~  292 (369)
                      ..+..-...|.++  ..|.+.+.+ ..|.+++++
T Consensus       639 a~e~~gv~PDIi~--~gKgLtgG~~Plaa~l~~~  670 (817)
T PLN02974        639 AWELLGCKPDIAC--YAKLLTGGLVPLAATLATE  670 (817)
T ss_pred             hHHhcCCCCCEEe--ecccccCCCCccEEEEEcH
Confidence            1111111367777  568887773 678888764

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.72  E-value=0.0028  Score=57.50  Aligned_cols=269  Identities=17%  Similarity=0.054  Sum_probs=155.9

Q ss_pred             ccccccccCCChHHHHHHHHHHhccCCCCCC---C---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINKNYVDMD---E---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~---~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      .||+.+-..-+++.+.++-.+.+|-|.....   .   +.....+.+.....+.+|++.|.+    +.+++..||...-+
T Consensus         9 vnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn----~~vlf~QGGGt~qF   84 (370)
T KOG2790|consen    9 VNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDN----YKVLFLQGGGTGQF   84 (370)
T ss_pred             eecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCc----eeEEEEeCCCcccc
Confidence            3544433333445666776677775543321   1   234567777888899999999964    45666665544443


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEe-ccCCc--cccCHHHHHHHHhhcCcEEEE
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK-LEEGY--YVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~-~~~~~--~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      .|+..-+..+     ..|.  ..+-|++..=+--+++++-++ |...+.++ ..+..  -.+|.+.++  .+++..+|+.
T Consensus        85 aAv~lNL~gl-----K~g~--~AdYiVTGsWS~KA~~EAkk~-~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yvyy  154 (370)
T KOG2790|consen   85 AAVPLNLIGL-----KHGR--CADYVVTGSWSAKAAEEAKKY-GTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYVYY  154 (370)
T ss_pred             cccchhhhcc-----ccCC--ccceEEeccccHHHHHHHHhh-CCceEEeccccccccCcCCChhhcc--cCCCccEEEE
Confidence            4332211100     0111  123566655555566666555 44433333 33221  235655554  3455678999


Q ss_pred             eeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          209 ILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       209 ~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      +...|..|.- +++.    +-.-.      +..++.|-....     ++.  ++|+.  ..+.+....+|.. +|.|..+
T Consensus       155 CaNETVHGVEf~~~P----~~~~~------~~vlVaDmSSnf-----lSr--pvDvs--k~gvi~aGAQKN~-G~aG~Tv  214 (370)
T KOG2790|consen  155 CANETVHGVEFDFIP----VNDPK------GAVLVADMSSNF-----LSR--PVDVS--KFGVIFAGAQKNV-GPAGVTV  214 (370)
T ss_pred             ecCceeeceecCCCC----CCCCC------CceEEEecccch-----hcC--Cccch--hcceEEecccccc-CccccEE
Confidence            9999998874 3332    11123      888899975443     221  34544  4567788899998 7999999


Q ss_pred             EEEeCCCCccccccccc---CccCCCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhc-C
Q 017569          288 VVWRTKDDLPDELVFHI---NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHS-S  360 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~---~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~-g  360 (369)
                      +++|+. ++.......+   +|.... .+-.+=.|.+...+..+...++.+-.. |+..+  ...+-++.+++.+.++ |
T Consensus       215 vivr~d-llg~~~~~tP~v~dyk~~~-~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~g  292 (370)
T KOG2790|consen  215 VIVRKD-LLGNALDITPSVLDYKIMD-KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNG  292 (370)
T ss_pred             EEEehh-hhcccccCCccccceeeec-cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999864 3322222222   222111 122333577777677777888887554 67777  7889999999999987 5


Q ss_pred             CC
Q 017569          361 YF  362 (369)
Q Consensus       361 ~~  362 (369)
                      |+
T Consensus       293 fy  294 (370)
T KOG2790|consen  293 FY  294 (370)
T ss_pred             eE
Confidence            44

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00082  Score=67.10  Aligned_cols=278  Identities=13%  Similarity=0.114  Sum_probs=143.7

Q ss_pred             CCCCCHHHHHHHHHHhhhhcCCCC--ccccccccCCChHHH-HHHHHHHhccCC-CCCCCC-----cchHHHHHHHHHHH
Q 017569           34 DNSMPKEAAYQVINDELMLDGNPR--LNLASFVTTWMEPEC-DKLVMASINKNY-VDMDEY-----PVTTELQNRCVNMI  104 (369)
Q Consensus        34 ~~~~~~~~i~~~l~~~~~~~~~p~--~~l~~~~~~~~~~~v-~~~~~~~~~~n~-~~~~~~-----~~~~~le~~~~~~l  104 (369)
                      ..+..+.++++.++++-..+.-.+  +.+ +|-.+..|+.+ +.++.   |..| .+|+++     ++--|-.-..+.++
T Consensus        97 ~~~~~E~eml~~l~~ia~kNk~~ksfIGm-GYyn~~vP~~I~RNile---np~W~TqYTPYQ~EIsQGRLEsllNyQTmi  172 (1001)
T KOG2040|consen   97 DKPLCESEMLQHLEDIASKNKIWKSFIGM-GYYNTHVPAVILRNILE---NPGWYTQYTPYQAEISQGRLESLLNYQTMI  172 (1001)
T ss_pred             CCCcCHHHHHHHHHHHHhhhhHHHHhhcc-ccccccCcHHHHHHhhh---CCcceeccCCCchhhhhhhHHHHhhhHHhh
Confidence            467788999999988765443222  122 22233334433 22221   1111 223333     23222222345678


Q ss_pred             HHHhCCCCCCCCCCCeEEeCCch---HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh----hcce
Q 017569          105 AHLFNTPVADDKTAVGVGTVGSS---EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY----FEVE  177 (369)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt---~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~----~G~~  177 (369)
                      +++.|.+-.+     ....--||   ||+.++.+.-+               +.+.++....|+-....++.    +|++
T Consensus       173 ~dlTGL~~aN-----ASLLDEgTAaaEAm~l~~~~~k---------------rkk~vvd~~~hpqtlsV~~TRa~~~~i~  232 (1001)
T KOG2040|consen  173 TDLTGLPMAN-----ASLLDEGTAAAEAMALCNRINK---------------RKKFVVDSNCHPQTLSVVKTRAKGFGIK  232 (1001)
T ss_pred             hhccCCcccc-----hhhhccchhHHHHHHHHHhhcc---------------cceEEecCCCCcchhhhhhcccccccee
Confidence            9999998632     23333333   34433322221               23588888889876665543    3444


Q ss_pred             eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC
Q 017569          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (369)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (369)
                      +...+..         +.. ...++...+++.+|.+. |.+.|+.++++.++..      +..+++--  -...+..+.|
T Consensus       233 v~~~~~~---------~~~-~s~~~v~gvlvQYP~t~-G~i~d~~el~~~a~~~------~s~vv~at--DLLaLtiLrp  293 (1001)
T KOG2040|consen  233 VVVSDIK---------EAD-YSSKDVSGVLVQYPDTE-GSVLDFDELVELAHAN------GSLVVMAT--DLLALTILRP  293 (1001)
T ss_pred             EEecCHH---------Hhh-ccccceeEEEEEcCCCC-CcccCHHHHHHHhhcc------CceEEEee--hhhHHHccCC
Confidence            3222221         111 12234677889999888 9999999999999998      76655422  1111222333


Q ss_pred             CccccccCCCCcEEEEcCccCCCCCCC-----eEEEEEeCC--CCcccccc-cccCccCCC---------C----CCc--
Q 017569          258 DLEWDFRLPLVKSINVSGHKYGLVYAG-----VGWVVWRTK--DDLPDELV-FHINYLGSD---------Q----PTF--  314 (369)
Q Consensus       258 ~~~~~~~~~~~Dsi~~~~hK~l~~p~g-----~g~l~~~~~--~~~~~~~~-~~~~y~~~~---------~----~~~--  314 (369)
                        +-.   .|+|....+++.++ +|.|     .|++.+++.  ..++..+. ...+-.+..         +    .+.  
T Consensus       294 --Pge---fGaDIavGSsQRFG-VPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKAT  367 (1001)
T KOG2040|consen  294 --PGE---FGADIAVGSSQRFG-VPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKAT  367 (1001)
T ss_pred             --hhh---cCceeeeccccccC-ccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccc
Confidence              222   38999999999885 4543     344444321  00110100 000111110         0    000  


Q ss_pred             cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          315 TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       315 ~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .--||-.+..+--..+.-.+.|.+|++++  |....+-+|+..|+..|
T Consensus       368 SNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag  415 (1001)
T KOG2040|consen  368 SNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG  415 (1001)
T ss_pred             hhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            00144433211111223345699999999  89999999999998765

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.63  E-value=0.0014  Score=60.98  Aligned_cols=287  Identities=14%  Similarity=0.062  Sum_probs=152.2

Q ss_pred             HhhhhcCCCC-ccccccccC--CC----hHHHHHHHHHHhccCCC-CCCCCcchHHHHHHHHHHHHHHhCCCCCC--CCC
Q 017569           48 DELMLDGNPR-LNLASFVTT--WM----EPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVAD--DKT  117 (369)
Q Consensus        48 ~~~~~~~~p~-~~l~~~~~~--~~----~~~v~~~~~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~--~~~  117 (369)
                      +.+..+.+|. +||+.+...  ..    -+.|+++=....+.+.. .|..-.+..++.+...+.   .+|.+.+.  +..
T Consensus        44 eAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakL---a~G~~s~~ik~~R  120 (427)
T KOG1411|consen   44 EAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKL---ALGDNSPVIKEKR  120 (427)
T ss_pred             HHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHH---hhcCCchhhhccc
Confidence            3455666666 676554322  11    25555554433332211 122233666666553221   35554321  111


Q ss_pred             CCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHH
Q 017569          118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAV  196 (369)
Q Consensus       118 ~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~  196 (369)
                      ...+=|-+||.|+-.+..-+ .++.          ....|++|.|+|--..+.-...|+.+..... ++.+..+|.+.+.
T Consensus       121 i~tvQ~lSGTGaLriga~Fl-~~f~----------~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~l  189 (427)
T KOG1411|consen  121 IVTVQTLSGTGALRVGAEFL-ARFY----------PSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGML  189 (427)
T ss_pred             eeEEEeccCcchhhHHHHHH-Hhhc----------cccceeecCCcccccCccccccCcceeeeeeccccccccchHHHH
Confidence            22334457777775543333 2221          1348999999998777777888999877776 4455788988887


Q ss_pred             HHHhhcC---cEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc----CC
Q 017569          197 ELVDENT---ICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR----LP  266 (369)
Q Consensus       197 ~~i~~~~---~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~~  266 (369)
                      +.+.+.|   .++.-....||||.=   +.+++|.++.++.      +..-+.|.||-++...-+..+ ...++    ..
T Consensus       190 edl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k------~~~pffDmAYQGfaSG~~d~D-A~avR~F~~~g  262 (427)
T KOG1411|consen  190 EDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK------NLLPFFDMAYQGFASGDLDKD-AQAVRLFVEDG  262 (427)
T ss_pred             HHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc------cccchhhhhhcccccCCchhh-HHHHHHHHHcC
Confidence            7777643   344445578999863   5688999999999      999999999988766311111 11111    11


Q ss_pred             CCcEEEEcCccCCCC-CCCeEEE--EEeCCCCcccc-----cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh
Q 017569          267 LVKSINVSGHKYGLV-YAGVGWV--VWRTKDDLPDE-----LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE  338 (369)
Q Consensus       267 ~~Dsi~~~~hK~l~~-p~g~g~l--~~~~~~~~~~~-----~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~  338 (369)
                      +=-.++-|.-|.|+- ....|.+  ++++.+...+.     ....+-|     +++-+.|.|-...+++- ..|+..-..
T Consensus       263 ~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmY-----SnPP~hGArIv~~Il~d-~~l~~~W~~  336 (427)
T KOG1411|consen  263 HEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMY-----SNPPLHGARIVATILSD-PDLKNQWLG  336 (427)
T ss_pred             CceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccc-----cCCCccchhhhhhccCC-hHHHHHHHH
Confidence            122334445566421 2233333  23433221111     0012233     23334455533322222 222222222


Q ss_pred             hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          339 VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       339 G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+..+  |.+.+-+.|.+.|++.|-
T Consensus       337 evk~MadRi~~mR~~L~d~L~~~gs  361 (427)
T KOG1411|consen  337 EVKGMADRIISMRQQLFDALEKEGS  361 (427)
T ss_pred             HHHHHHHhhhhhHHHHhHHhhcCCC
Confidence            33334  888888888888887664

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0026  Score=60.21  Aligned_cols=191  Identities=16%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             cCCCCcccccc--ccCCChHHHHHHHHHHhccCC-------CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe
Q 017569           53 DGNPRLNLASF--VTTWMEPECDKLVMASINKNY-------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT  123 (369)
Q Consensus        53 ~~~p~~~l~~~--~~~~~~~~v~~~~~~~~~~n~-------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t  123 (369)
                      +|++.+|++++  ..-...+.+.+.....+.+..       +.|+.-...-.+|++    +++++|++.       .++-
T Consensus        92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~----iakF~G~E~-------aivY  160 (467)
T KOG1358|consen   92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKR----IAKFMGTED-------AIVY  160 (467)
T ss_pred             cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHH----HHHhhCCcc-------eeee
Confidence            56666665542  221223445555555544321       112222222345555    999999985       3444


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc-
Q 017569          124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN-  202 (369)
Q Consensus       124 ~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~-  202 (369)
                      +-|=.++..++-++..+             ++.+++-+..+..+.+.+++..-.+.+..-+      |.++|+..+.+. 
T Consensus       161 s~gF~ti~S~ipafsKr-------------GDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn------dm~~lerll~E~~  221 (467)
T KOG1358|consen  161 SYGFSTIESAIPAFSKR-------------GDIIFVDEAVNFAIQKGLQLSRSTISYFKHN------DMEDLERLLPEQE  221 (467)
T ss_pred             ccccchhhhcchhhhcc-------------CcEEEEehhhhHHHHHHHhhhhheeEEecCC------CHHHHHHhccCcc
Confidence            44444455566666543             5788888888888888877765555555433      456666554331 


Q ss_pred             ------------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--cccccCCCC
Q 017569          203 ------------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLV  268 (369)
Q Consensus       203 ------------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~  268 (369)
                                  .+.|++..---++|.+.|+.+|.++..+|      ...+++|..++.+.+.-.....  .+......+
T Consensus       222 ~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Ky------k~RvildEs~SfG~lg~~GrGvteH~~v~~~~i  295 (467)
T KOG1358|consen  222 DEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKY------KFRVILDESLSFGVLGKTGRGVTEHFGVPITDI  295 (467)
T ss_pred             hhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhh------eEEEEEecccccccccccCccccccCCCCccce
Confidence                        24677777888999999999999999999      9999999998776652111000  123334568


Q ss_pred             cEEEEcCccCC
Q 017569          269 KSINVSGHKYG  279 (369)
Q Consensus       269 Dsi~~~~hK~l  279 (369)
                      |.++.+..-.+
T Consensus       296 Div~~sm~~al  306 (467)
T KOG1358|consen  296 DIVTASMETAL  306 (467)
T ss_pred             eeeeecccccc
Confidence            88887765554

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.08  E-value=0.0053  Score=51.67  Aligned_cols=63  Identities=10%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhC--CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      |..+.+..+|++++++|+.+.+|  .+.+   ...+++|+|++.|+..++.++.++             ++.|+++.|.|
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~---pd~Ivvt~Ga~~al~~l~~~l~dp-------------GD~VlVp~P~Y  151 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFD---ADMIVLSAGATAANEIIMFCIADP-------------GDAFLVPTPYY  151 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccc---hhheEEcCCHHHHHHHHHHHHcCC-------------CCEEEEeCCCC
Confidence            44566899999999999999988  3332   135999999999999998888663             57899999987


Q ss_pred             c
Q 017569          165 V  165 (369)
Q Consensus       165 ~  165 (369)
                      +
T Consensus       152 ~  152 (153)
T PLN02994        152 A  152 (153)
T ss_pred             C
Confidence            5

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=96.52  E-value=0.012  Score=55.22  Aligned_cols=170  Identities=14%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcchHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWE  168 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~Vi~s~~~h~s~~  168 (369)
                      +....+||+.+++ |-++.|--..  +...+++.+|+|+-+..++.++....        .....| .|+.+.|.|++|.
T Consensus        42 ~f~s~eL~~~Ir~-LH~~VGNAvt--~gr~IV~GtGsTQL~~AalyALSp~~--------~~~~~p~~VVa~aPYY~~Y~  110 (363)
T PF04864_consen   42 WFISPELERQIRR-LHRVVGNAVT--DGRYIVFGTGSTQLFNAALYALSPNA--------SPSSSPASVVAAAPYYSSYP  110 (363)
T ss_dssp             TTS-HHHHHHHHH-HHHHH-SB----TTSEEEEECHHHHHHHHHHHHHCHHT---------TTSSSEEEEE-SS--CHHH
T ss_pred             eeccHHHHHHHHH-HHHHhccccc--cCcEEEEcCCHHHHHHHHHHhcCCCC--------CCCCCCceeEecCCCccchH
Confidence            3456788877665 5555664432  23568999999999988888875430        111234 7999999999999


Q ss_pred             HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccc
Q 017569          169 KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG  248 (369)
Q Consensus       169 ~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~  248 (369)
                      ...+++.-..-...=|...+. +      .-+..+.+=++|+||||.|.+..     .+++..      +..+|.|-||-
T Consensus       111 ~qt~~f~s~~y~w~Gda~~~~-~------~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~------~~k~I~D~AYY  172 (363)
T PF04864_consen  111 EQTDFFDSRLYKWAGDASNFK-N------SDNPSPYIELVTSPNNPDGQLRE-----AVLNGS------SGKVIHDLAYY  172 (363)
T ss_dssp             HHCCCT-BTTEEEEEECCCGT-T-------S-CCGEEEEEESS-TTT-----------SSTTT------EEEEEEE-TT-
T ss_pred             HHHHhccccCccccccHHhhc-c------CCCCCCeEEEEeCCCCCcccccc-----hhcCCC------Ccceeeeeeee
Confidence            888876544322322322232 1      11123556688999999998731     123444      67789999998


Q ss_pred             cccccccCCCccccccCCCCcEEEEcCccC-CCCCCCeEEEEEeCCCC
Q 017569          249 GFIAPFLYPDLEWDFRLPLVKSINVSGHKY-GLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~-l~~p~g~g~l~~~~~~~  295 (369)
                      +..+   .|-   .-. ..=|.+-+...|. +.++...||.++||++.
T Consensus       173 WPhy---TpI---~~~-aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~V  213 (363)
T PF04864_consen  173 WPHY---TPI---TAP-ADHDIMLFTLSKLTGHAGSRFGWALVKDEEV  213 (363)
T ss_dssp             STTT---S------S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHH
T ss_pred             cccc---ccc---CCC-CCCceEEEEEecccCccccccceeeecCHHH
Confidence            7544   221   111 1236677776676 66677889999998643

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=95.60  E-value=0.32  Score=44.83  Aligned_cols=209  Identities=10%  Similarity=-0.051  Sum_probs=103.2

Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh------cce------eEEEeccC-
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF------EVE------LKEVKLEE-  185 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~------G~~------v~~v~~~~-  185 (369)
                      ...|+++|+|||-+|++.+|+...          ..+.|.+....|--+...++.-      |-+      |...|+.+ 
T Consensus       104 vc~F~NSGSEANDLALRLAR~ftk----------hqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDv  173 (452)
T KOG1403|consen  104 VCFFVNSGSEANDLALRLARNFTK----------HQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDV  173 (452)
T ss_pred             EEEEecCCchhhHHHHHHHHhhcc----------cCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccc
Confidence            479999999999999999988521          2234433333332222222211      111      22233311 


Q ss_pred             --Ccc-----------ccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEE
Q 017569          186 --GYY-----------VMNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIH  242 (369)
Q Consensus       186 --~~~-----------~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~  242 (369)
                        ..+           ..=.+.+++.+++      ...+.+..+-.+=-|.+-|    ++++++..+..      |-.++
T Consensus       174 yrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a------GGv~I  247 (452)
T KOG1403|consen  174 YRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA------GGVCI  247 (452)
T ss_pred             cccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC------CCeEE
Confidence              001           1112334444432      1223333333344455533    67788888888      89999


Q ss_pred             eecccccccccccC-CCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-ccCccCCCCCCccccCCc
Q 017569          243 VDAASGGFIAPFLY-PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSK  320 (369)
Q Consensus       243 vD~a~~~~~~~~~~-~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr  320 (369)
                      .|+++-|+-.  +. ..+.+...-.-.|.++  ..|=++.....+.+..+++ . .+++.. ...|...    +   |..
T Consensus       248 aDEVQvGFGR--vG~hyWafq~y~fiPDIVt--mgKpmGNGhPVa~Vattke-I-A~Af~atgv~YFNT----y---GGn  314 (452)
T KOG1403|consen  248 ADEVQVGFGR--VGSHYWAFQTYNFIPDIVT--MGKPMGNGHPVAAVATTKE-I-AQAFHATGVEYFNT----Y---GGN  314 (452)
T ss_pred             eehhhhcccc--cchhhhhhhhhccccchhe--ecccCCCCCeeeEEeccHH-H-HHHhccccceehhc----c---CCC
Confidence            9999876543  11 1112222112345555  4565555555666665432 2 233322 2344322    1   222


Q ss_pred             chhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          321 GSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       321 ~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +..- +...+.|+....|.+++ +..++-.+|.+.|+.
T Consensus       315 PVsC-Av~laVm~v~e~E~Lq~-ha~~vG~~L~~lL~~  350 (452)
T KOG1403|consen  315 PVSC-AVGLAVMRVCEDENLQE-HAQQVGEKLEVLLRR  350 (452)
T ss_pred             chhH-HHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHH
Confidence            2222 22235566666666655 666666777777664

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=82.42  E-value=15  Score=35.08  Aligned_cols=141  Identities=14%  Similarity=0.092  Sum_probs=74.3

Q ss_pred             CHHHHHHHHhh-----cCc-EEEEee----CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccc--ccCCC
Q 017569          191 NPVKAVELVDE-----NTI-CVAAIL----GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP--FLYPD  258 (369)
Q Consensus       191 d~~~L~~~i~~-----~~~-~v~~~~----~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~--~~~~~  258 (369)
                      .++++|+.|.+     +|. .+++.-    |.-..++.+-+..+.+++++|      ++.++||+++.|+-..  |...+
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh------~v~fivDEVQTGgGaTGk~WaHe  327 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH------GVAFIVDEVQTGGGATGKFWAHE  327 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc------CeEEEeeeeecCCCccCceeeeh
Confidence            35667777754     233 333332    222334557799999999999      9999999998665441  22211


Q ss_pred             ccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh
Q 017569          259 LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE  338 (369)
Q Consensus       259 ~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~  338 (369)
                       .+++ ..-.|.+|+| .|+..    .| + +.+.++.+     +.+|--.   + |+.| .++. .+-+-..++.+..+
T Consensus       328 -hw~l-~~PpD~vTFS-KK~q~----gG-f-fh~~~frp-----n~pYrif---N-TWmG-dP~k-~lll~~vv~~I~~~  387 (484)
T KOG1405|consen  328 -HWNL-DSPPDVVTFS-KKFQT----GG-F-FHDEEFRP-----NEPYRIF---N-TWMG-DPSK-NLLLEEVVQEIKRE  387 (484)
T ss_pred             -hcCC-CCCccceehh-hhhhc----Cc-c-ccCcccCC-----CchHHHh---h-hhcC-ChHH-HHHHHHHHHHHhHH
Confidence             1222 2357888865 45542    23 2 33333332     2223211   1 1112 2232 44455666666655


Q ss_pred             hHHHHHhhHHHHHHHHHHHh
Q 017569          339 VIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       339 G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ++-+ ++...-++|...|.+
T Consensus       388 ~Ll~-n~~~vG~~l~~gL~~  406 (484)
T KOG1405|consen  388 DLLN-NVAHVGKALLKGLLE  406 (484)
T ss_pred             HHHH-HHHHHHHHHHHHHHH
Confidence            5433 555556666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3hbx_A	502	Crystal Structure Of Gad1 From Arabidopsis Thaliana		1e-171
1xey_A	466	Crystal Structure Of The Complex Of Escherichia Col		4e-92
1pmm_A	466	Crystal Structure Of Escherichia Coli Gadb (Low Ph)		4e-92
2dgk_A	452	Crystal Structure Of An N-terminal Deletion Mutant		1e-90
3mbb_A	514	Crystal Structure Of Stspl - Apo Form, After Treatm		8e-12
3maf_B	518	Crystal Structure Of Stspl (Asymmetric Form) Length		1e-11
3mc6_C	497	Crystal Structure Of Scdpl1 Length = 497		2e-11
3maf_A	518	Crystal Structure Of Stspl (Asymmetric Form) Length		5e-11
3mau_A	514	Crystal Structure Of Stspl In Complex With Phosphoe		5e-11
3mad_A	514	Crystal Structure Of Stspl (Symmetric Form) Length		6e-11
3mc6_A	497	Crystal Structure Of Scdpl1 Length = 497		8e-11
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		8e-08

>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana Length = 502

Iteration: 1
 Score =  598 bits (1543), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 276/338 (81%), Positives = 306/338 (90%)
Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF      
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
                GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGH YGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada With Glutarate At 2.05 A Resolution Length = 466

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/332 (48%), Positives = 218/332 (65%), Gaps = 2/332 (0%)
Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LG    TF +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 337

>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph) Length = 466

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/332 (48%), Positives = 218/332 (65%), Gaps = 2/332 (0%)
Query: 8   TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
           TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  T
Sbjct: 7   TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67  WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
           W +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GS
Sbjct: 67  WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
           SEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
              M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
           SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           LG    TF +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 337

>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of Escherichia Coli Gadb In An Autoinhibited State (aldamine) Length = 452

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 157/323 (48%), Positives = 212/323 (65%), Gaps = 1/323 (0%)
Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL
Sbjct: 2   SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+
Sbjct: 62  MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + 
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
            PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF 
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFE 338
           +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGRE 323

>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 107/288 (37%), Gaps = 38/288 (13%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   HKYG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGSDQPTFTLN-----FSKG------SSQIIAQYYQFIRLGFEVIPSF 343
            GS     +        S G      +++ I Q    ++ G   IPS 
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL 399

>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 107/288 (37%), Gaps = 38/288 (13%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   HKYG    G   +++R  D          D P  L F   +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGSDQPTFTLN-----FSKG------SSQIIAQYYQFIRLGFEVIPSF 343
            GS     +        S G      +++ I Q    ++ G   IPS 
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL 403

>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 19/259 (7%)
Query: 83  NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
           N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA L+ K    
Sbjct: 95  NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
             R        +P I+        ++K A YF             Y ++  K  + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
           T+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F+    Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
           L   DFR+P V SI+   HKYG    G   +++R  D    +   +  + G    + TL 
Sbjct: 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
            S+  + ++  +   + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339

>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 38/288 (13%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 296 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 307 LGSDQPTFTLN-----FSKG------SSQIIAQYYQFIRLGFEVIPSF 343
            GS     +        S G      +++ I Q    ++ G   IPS 
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL 403

>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 38/288 (13%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGSDQPTFTLN-----FSKG------SSQIIAQYYQFIRLGFEVIPSF 343
            GS     +        S G      +++ I Q    ++ G   IPS 
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL 399

>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 38/288 (13%)
Query: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
             N +  D +P T + +   V M AH+     A   T  G  T G +E+++LA +   R 
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
           W +  K        P  V   +    ++K A+YF            Y   +     E + 
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
            NT+ VA        G  + +  +  L  +           HVDA  GGFI P+     Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD----------DLPDELVFHINY 306
           P   +DFRL  V S++   H YG    G   +++R  D          D P  L F   +
Sbjct: 292 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 307 LGSDQPTFTLN-----FSKG------SSQIIAQYYQFIRLGFEVIPSF 343
            GS     +        S G      +++ I Q    ++ G   IPS 
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSL 399

>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1 Length = 497

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 19/259 (7%)
Query: 83  NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
           N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA L+ K    
Sbjct: 95  NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
             R        +P I+        ++K A YF             Y ++  K  + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
           T+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F+    Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
           L   DFR+P V SI+   H YG    G   +++R  D    +   +  + G    + TL 
Sbjct: 261 LPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLG 336
            S+  + ++  +   + +G
Sbjct: 321 GSRPGAIVVGCWATMVNMG 339

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 47/263 (17%)
Query: 70  PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
           P   K+V   +  N  D   +  T  L+ + V ++  L N     +K A G    G +EA
Sbjct: 44  PITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-----NKDAYGHIVSGGTEA 98
Query: 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYV 189
            + A    K  W++KR++     + P I+        +EK                  Y+
Sbjct: 99  NLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLE----------YI 148
Query: 190 MNPVKAVELVDENTI----------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
             P+K    +DE  +           +  I G+T  G  ++++ L  +  + N       
Sbjct: 149 YAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENN------I 202
Query: 240 PIHVDAASGGFIAPFLYP-------DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292
            IHVDAA GG + PFL         + ++DF L  V SI +  HK G      G ++++ 
Sbjct: 203 YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLG-VDSITIDPHKXGHCPIPSGGILFKD 261
Query: 293 KDDLPDELVFHINYLGSDQPTFT 315
                   + +  YL  D P  T
Sbjct: 262 --------IGYKRYLDVDAPYLT 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	1e-150
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	1e-149
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	1e-130
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-118
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-114
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-16
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	4e-14
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-12
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-12
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	5e-11
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	6e-11
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  432 bits (1113), Expect = e-150
 Identities = 287/338 (84%), Positives = 317/338 (93%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           MV+S   ++S   + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1   MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60

Query: 61  ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
           ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61  ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120

Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
           VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180

Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
           VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
           IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
           +FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG E
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score =  428 bits (1102), Expect = e-149
 Identities = 161/323 (49%), Positives = 220/323 (68%), Gaps = 1/323 (0%)

Query: 16  STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
           S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL
Sbjct: 2   SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61

Query: 76  VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
           +  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+
Sbjct: 62  MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121

Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
           A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   M+P + 
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180

Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
           +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240

Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
            PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF 
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300

Query: 316 LNFSKGSSQIIAQYYQFIRLGFE 338
           +NFS+ + Q+IAQYY+F+RLG E
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGRE 323

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  379 bits (974), Expect = e-130
 Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 24/316 (7%)

Query: 32  MPDNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMASINKNYVDMDEY 90
           M +  + ++   + +     LD      N+   + + + P   K+V   +  N  D   +
Sbjct: 5   MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLF 64

Query: 91  PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
             T  L+ + V ++  L N        A G    G +EA ++A    K  W++KR++   
Sbjct: 65  KGTKLLEEKAVALLGSLLNNK-----DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119

Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTI-CVAAI 209
             + P I+        +EK     ++E     ++E  Y ++     + V++  +  +  I
Sbjct: 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YTIDEKFVKDAVEDYDVDGIIGI 178

Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DLEWD 262
            G+T  G  ++++ L  +  + N        IHVDAA GG + PFL         + ++D
Sbjct: 179 AGTTELGTIDNIEELSKIAKENN------IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232

Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
           F L  V SI +  HK G      G ++++        L     YL   +   T+  ++  
Sbjct: 233 FSLG-VDSITIDPHKMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQA-TILGTRVG 289

Query: 323 SQIIAQYYQFIRLGFE 338
                 Y     LG E
Sbjct: 290 FGGACTYAVLRYLGRE 305

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  351 bits (901), Expect = e-118
 Identities = 73/339 (21%), Positives = 121/339 (35%), Gaps = 25/339 (7%)

Query: 8   TDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTW 67
              R  +          A +PR  +P   +  E A     +            AS     
Sbjct: 52  ASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG----YASGAVYH 107

Query: 68  MEPECDKLV----MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT 123
            +      +          N +  D +P T + +   V M AH+     A   T  G  T
Sbjct: 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVT 166

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183
            G +E+++LA   ++   +       K    P  V   +    ++K A+YF ++L    L
Sbjct: 167 SGGTESLLLAMKTYRDWARAT-----KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221

Query: 184 EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243
           +   Y  +     E +  NT+ VA        G  + +  +  L  +           HV
Sbjct: 222 DA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHV 274

Query: 244 DAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
           DA  GGFI P+     YP   +DFRL  V S++   HKYG    G   +++R  D L  +
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334

Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
                ++ G    + T   S+  +     +   + LG E
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  339 bits (872), Expect = e-114
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 25/329 (7%)

Query: 21  RYVRAAIPRFKMPDNSMPKEAAYQVIND--ELMLDGNPRLNLASFVTTWMEPECDKLVMA 78
           R     +   ++P N +P++   + +N   +L+     +    S        +   L   
Sbjct: 27  RSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTI 86

Query: 79  SINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134
           +  K    N +  D +P   ++++  V+M+  +FN P     T  G  T G +E+++LA 
Sbjct: 87  AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLAC 143

Query: 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK 194
           L+ K      R        +P I+        ++K A YF ++L+ V+L+   Y ++  K
Sbjct: 144 LSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGK 198

Query: 195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254
             + +++NT+ +     +   G  +D++ L  +  K      +  P+HVD+  G FI  F
Sbjct: 199 VKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSF 252

Query: 255 LYPDL-----EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309
           +           DFR+P V SI+   HKYG    G   +++R  D    +   +  + G 
Sbjct: 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG 312

Query: 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338
              + TL  S+  + ++  +   + +G  
Sbjct: 313 LYGSPTLAGSRPGAIVVGCWATMVNMGEN 341

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 26/214 (12%), Positives = 60/214 (28%), Gaps = 30/214 (14%)

Query: 91  PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
              + +      ++   F            + T  S+   +   L+  RK          
Sbjct: 126 SGASIMYALTNKILESFFKQL---GLNVHAIATPISTGMSISLCLSAARKK--------- 173

Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEV--KLEEGYYVMNPVKAVELVDE-----NT 203
            Y    ++          K   +  + ++ V   L+     +        + +     N 
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232

Query: 204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD 262
            CV + L        +D+  +  +         +D P  ++ A       +L      + 
Sbjct: 233 PCVLSTLTFFPPRNSDDIVEIAKICEN------YDIPHIINGAYAIQNNYYLEKLKKAFK 286

Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296
           +R+    ++  S  K  L   G G V     + +
Sbjct: 287 YRVD---AVVSSSDKNLLTPIGGGLVYSTDAEFI 317

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 34/321 (10%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD----GNPRLNLASFVTTWMEPE-CDKLV 76
           Y+RA +P    P++    ++ +  I   +M       +P    A +      P     ++
Sbjct: 42  YLRAQLPES-APEDPDSWDSIFGDIERIIMPGVVHWQSPH-MHAYYPALTSWPSLLGDML 99

Query: 77  MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-----VADDKTAVGVGTVGSSEAIM 131
             +IN         P  TEL+   ++ +A +   P             GV     SE+ +
Sbjct: 100 ADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159

Query: 132 LAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVELKEVKLEE 185
           +A LA ++    + K      D+ +                 EK      V++K + +++
Sbjct: 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD 219

Query: 186 GYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
            +  +      + ++E+       + V A LG+T    F+ +  L  +      E  W  
Sbjct: 220 NF-SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPIC---AREGLW-- 273

Query: 240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
            +H+DAA  G    FL P+     + +    S   +  K+ +V+        + K  L  
Sbjct: 274 -LHIDAAYAG--TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQ 330

Query: 299 ELVFHINYLGSDQPTFTLNFS 319
               +  YL         +F 
Sbjct: 331 TFSVNPIYLRHANSGVATDFM 351

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 58/329 (17%), Positives = 109/329 (33%), Gaps = 52/329 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
           Y++  IP    P+     +   Q I   +M            VT W  P+          
Sbjct: 37  YLKPLIPDA-APEKPEKWQDVMQDIERVIMPG----------VTHWHSPKFHAYFPTANS 85

Query: 73  -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
                  ++  +I          P  TEL+   ++ +  +   P            GV  
Sbjct: 86  YPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQ 145

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVE 177
             +SE+ ++A L  K K  ++ KE    +D+                   E+      V+
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           L+ V+ E   + M      + ++++             LG+T +  F+ +     +    
Sbjct: 206 LRSVQSEN--HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG--- 260

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
           N+   W   IHVDAA  G  + F+ P+     + +    S N + HK+ LV      +  
Sbjct: 261 NKHNLW---IHVDAAYAG--SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL 315

Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFS 319
           +    + +       YL  D      ++ 
Sbjct: 316 KDPSWVVNAFNVDPLYLKHDMQGSAPDYR 344

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 62/321 (19%), Positives = 105/321 (32%), Gaps = 51/321 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
           Y+R  IP    P      E   Q +   +M            VT W  P           
Sbjct: 37  YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85

Query: 73  -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
                  ++  +I          P  TEL+   ++ +  +   P      +     GV  
Sbjct: 86  YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145

Query: 124 VGSSEAIMLAGLA----FKRKWQQKRKEQGKPYDKPNIV--TGANVQVCWEKFARYFEVE 177
             +SEA ++A LA      R+ Q       +      +V           E+      V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           LK +  +  +  M      E ++ +         V A LG+T    F+++  +  +    
Sbjct: 206 LKAIPSDGKF-AMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC--- 261

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
           +EE  W   +HVDAA  G  + F+ P+       +    S N + HK+ LV      +  
Sbjct: 262 HEEDIW---LHVDAAYAG--SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316

Query: 291 RTKDDLPDELVFHINYLGSDQ 311
           + + DL         YL    
Sbjct: 317 KRRTDLTGAFKLDPVYLKHSH 337

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 49/318 (15%), Positives = 108/318 (33%), Gaps = 58/318 (18%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
            +  AI    + + + P ++    + + +                   P+C         
Sbjct: 63  ALEDAINAVDLDNKNAPLKSVIDDVAELVA----------KNAIFTQHPDCIAHLHTPPL 112

Query: 73  ------DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
                 +  ++A++N++    D+    T ++ + VN +   ++      + A G+ T G 
Sbjct: 113 MPAVAAE-AMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS----EKADGIFTSGG 167

Query: 127 SEAIMLAGLA-----FKRKWQQKRKEQGKPYDKPN--IVTGANVQVCWEKFARYF---EV 176
           +++  +  +        +      ++ G P       IV         +K A +    E 
Sbjct: 168 TQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEK 227

Query: 177 ELKEVKLEEGYYVMNPV---KAV-ELVDENTI--CVAAILGSTLTGEFEDVKLLHDLLTK 230
            +  V        M+     + + +   E  I   +    G+T  G  +D+  + D+   
Sbjct: 228 AVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA-- 284

Query: 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVV 289
             +   W   +HVD A GG     +    +   + +    SI+V  HK        G ++
Sbjct: 285 -VKHDMW---MHVDGAYGG---ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALL 337

Query: 290 WRTKDDLPDELVFHINYL 307
              K +    L+ H +YL
Sbjct: 338 VNDKSNF-KFLLHHADYL 354

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 52/310 (16%), Positives = 101/310 (32%), Gaps = 44/310 (14%)

Query: 22  YVRAAIPRF--KMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWM 68
            +   +  F  ++ D+    E       D L      G+PR        L++      W+
Sbjct: 54  QLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWL 113

Query: 69  EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
                    ++ N N    +  PV   ++   +  +  +        K   G+ + G + 
Sbjct: 114 --------TSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS---SKDGDGIFSPGGAI 162

Query: 129 AIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYF---EVELKEVKLE 184
           + M + +A + K+  + K +G     K  + T        +K           +  +K  
Sbjct: 163 SNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN 222

Query: 185 EGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
           E    + P      + E          V A  G+T+ G F+ ++ + D+     +   W 
Sbjct: 223 E-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC---EKYNLW- 277

Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297
             +HVDAA GG     +          +    S+  + HK   V      ++ + K  L 
Sbjct: 278 --LHVDAAWGG--GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333

Query: 298 DELVFHINYL 307
                   YL
Sbjct: 334 GCNQMCAGYL 343

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 46/309 (14%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWMEP 70
            ++  +   ++      ++   +     +      G+PR        L+  +     +  
Sbjct: 73  ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII-- 129

Query: 71  ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
                   S+N +    +  PV   ++   +  +  L      D     G+   G S + 
Sbjct: 130 ------TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD-----GIFCPGGSISN 178

Query: 131 MLAGLAFKRKWQQKRKEQG-KPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEG 186
           M A    + +     K++G +      + T        +K A +       ++ VK +E 
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADER 238

Query: 187 YYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
              M P      +            V+A  G+T+ G F+ ++ + D+         W   
Sbjct: 239 -GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVC---QRHGLW--- 291

Query: 241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD-LPD 298
           +HVDAA GG  +  L          +    S+  + HK          ++ +   + L  
Sbjct: 292 LHVDAAWGG--SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349

Query: 299 ELVFHINYL 307
                 +YL
Sbjct: 350 CHGSQASYL 358

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 52/393 (13%), Positives = 118/393 (30%), Gaps = 141/393 (35%)

Query: 6   TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL------N 59
           T  + + +L      +Y+             +P+E           L  NPR       +
Sbjct: 299 TPDEVKSLLL-----KYL-------DCRPQDLPREV----------LTTNPRRLSIIAES 336

Query: 60  LASFVTTW---MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVAD 114
           +   + TW       CDKL   +I ++ +++ E     E + +  + ++ +F  +  +  
Sbjct: 337 IRDGLATWDNWKHVNCDKL--TTIIESSLNVLE---PAEYR-KMFDRLS-VFPPSAHI-- 387

Query: 115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF 174
                          I+L+ +     W           D   +V          K  +Y 
Sbjct: 388 -------------PTILLSLI-----WFDV-----IKSDVMVVV---------NKLHKYS 415

Query: 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD-LLTKKNE 233
            VE K+ K E    + +                  +   L  + E+   LH  ++   N 
Sbjct: 416 LVE-KQPK-ESTISIPS------------------IYLELKVKLENEYALHRSIVDHYNI 455

Query: 234 ETGWD----TPIHVDAASGGFIA---------------PFLYPDLEWDFRLPLVKSINVS 274
              +D     P ++D      I                  ++ D  +      ++     
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQ---- 505

Query: 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI- 333
             K  + +    W    +  +   +L F+  Y+  + P +         +++     F+ 
Sbjct: 506 --K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY--------ERLVNAILDFLP 553

Query: 334 RLGFEVIPS-FCCVDHKKLSSFFVIHSSYFYDT 365
           ++   +I S +  +    L +      + F + 
Sbjct: 554 KIEENLICSKYTDLLRIALMA---EDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.98
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.98
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.95
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.94
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.94
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.94
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.93
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.93
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.93
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.93
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.93
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.93
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.92
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.92
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.92
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.91
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.91
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.91
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.91
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.91
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.9
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.9
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.9
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.9
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.9
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.9
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.9
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.89
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.89
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.89
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.89
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.89
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.89
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.89
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.89
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.88
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.88
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.88
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.88
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.88
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.88
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.88
1svv_A	359	Threonine aldolase; structural genomics, structura	99.88
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.88
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.88
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.88
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.87
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.87
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.87
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.87
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.87
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.87
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.87
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.87
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.87
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.87
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.87
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.87
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.86
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.86
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.86
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.86
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.86
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.86
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.86
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.86
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.86
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.86
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.86
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.86
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.85
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.85
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.85
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.85
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.85
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.85
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.85
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.85
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.85
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.84
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.84
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.84
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.84
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.84
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.84
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.84
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.84
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.84
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.84
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.84
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.84
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.84
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.84
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.84
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.84
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.84
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.83
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.83
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.83
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.83
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.83
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.83
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.83
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.83
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.83
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.83
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.83
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.83
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.82
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.82
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.82
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.82
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.82
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.82
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.82
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.82
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.82
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.82
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.82
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.81
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.81
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.81
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.81
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.8
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.8
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.8
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.8
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.8
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.8
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.8
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.8
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.8
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.79
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.79
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.79
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.79
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.79
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.79
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.79
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.79
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.79
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.79
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.79
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.78
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.78
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.78
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.78
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.78
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.77
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.77
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.77
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.64
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.77
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.76
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.76
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.76
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.76
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.76
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.76
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.75
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.75
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.75
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.75
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.75
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.75
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.74
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.74
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.73
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.73
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.72
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.7
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.69
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.68
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.68
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.68
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.66
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.66
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.65
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.65
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.65
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.64
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.64
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.63
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.62
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.62
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.62
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.61
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.61
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.6
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.6
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.6
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.59
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.59
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.58
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.58
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.58
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.57
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.57
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.57
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.56
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.54
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.54
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.5
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.41
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.39
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.92
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.17
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.94
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.84
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.07

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-50  Score=404.68  Aligned_cols=363  Identities=80%  Similarity=1.294  Sum_probs=315.5

Q ss_pred             CCcccccCCCcccccccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHh
Q 017569            1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI   80 (369)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~   80 (369)
                      ||++.+.++....+++.|+..++...+|++.+|+.+.+.+++++.+++.+.+++||.+|+.+++++++++.+.+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~   80 (502)
T 3hbx_A            1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSI   80 (502)
T ss_dssp             -----------CCCSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTT
T ss_pred             CCcccccCCCcccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHh
Confidence            78999889999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             ccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec
Q 017569           81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG  160 (369)
Q Consensus        81 ~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s  160 (369)
                      +.+..+|..+|...++|+++++|+++++|++.+++....+++|+||++||++++++++.++..+++..|.+..+++|+++
T Consensus        81 ~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~  160 (502)
T 3hbx_A           81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG  160 (502)
T ss_dssp             TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE
T ss_pred             ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc
Confidence            99988888899999999999999999999983222345678899999999999999988877766666766666799999


Q ss_pred             CCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          161 ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       161 ~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      .++|+++.++++.+|++++.||++++++.+|+++|+++|+++|++|+++.|+|++|.++|+++|+++|++++++++.++|
T Consensus       161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~  240 (502)
T 3hbx_A          161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP  240 (502)
T ss_dssp             TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence            99999999999999999999999876699999999999999999999999999999999999999999998777777999


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCc
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK  320 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr  320 (369)
                      +|||+||++++.|++.+..+.++...++|++++++|||+++|.|+|++++++++.+...+.....|+++....++++++|
T Consensus       241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr  320 (502)
T 3hbx_A          241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK  320 (502)
T ss_dssp             EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSC
T ss_pred             EEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCc
Confidence            99999999988777777767777778999999999999999999999999987766555556678887765566778999


Q ss_pred             chhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          321 GSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       321 ~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ++..++++|++++.+|.+|+.++  ++.+++++|++.|+++|.|+
T Consensus       321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~  365 (502)
T 3hbx_A          321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFN  365 (502)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            98889999999999999999888  99999999999999998543

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=5.6e-46  Score=366.98  Aligned_cols=346  Identities=47%  Similarity=0.849  Sum_probs=277.6

Q ss_pred             ccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHH
Q 017569           16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTE   95 (369)
Q Consensus        16 ~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~   95 (369)
                      +.|+.......+.+..+|+.|.+.+++++.+.+....++.+..|+..|+++++++.+.+++.++++.+..+|..+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~   81 (452)
T 2dgk_A            2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA   81 (452)
T ss_dssp             -------------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred             CcccchHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhChhHHH
Confidence            45677776667777789999999999999999988666655556666666666788999999999988888888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhc
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE  175 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G  175 (369)
                      +|+++++|+++++|++.++.....+++|+|||+|++++++++++.+..++..+|.+.++++|++++ +|+++.++++.+|
T Consensus        82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G  160 (452)
T 2dgk_A           82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD  160 (452)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence            999999999999999862100124899999999999999998876554444455333346899999 9999999999999


Q ss_pred             ceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       176 ~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      ++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|+++|++++++++.++|+|||+||+++..||+
T Consensus       161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~  240 (452)
T 2dgk_A          161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV  240 (452)
T ss_dssp             CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred             ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence            99999999864599999999999999999999999999999999999999999995433333999999999999877666


Q ss_pred             CCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh
Q 017569          256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (369)
Q Consensus       256 ~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l  335 (369)
                      .+..+.++...++|++++++|||+++|+++|+++++++..+...+...+.|+++...+++++++|++..++++|++++.+
T Consensus       241 ~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l  320 (452)
T 2dgk_A          241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL  320 (452)
T ss_dssp             CTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH
T ss_pred             CccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence            65545566667999999999999999999999999876544344444567776543345577899997799999999999


Q ss_pred             cHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          336 GFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       336 g~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      |.+|++++  ++.++++++++.|++.+.|
T Consensus       321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~  349 (452)
T 2dgk_A          321 GREGYTKVQNASYQVAAYLADEIAKLGPY  349 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            99999988  9999999999999998754

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.8e-44  Score=354.46  Aligned_cols=329  Identities=17%  Similarity=0.215  Sum_probs=268.2

Q ss_pred             hhHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCC--ChHHHHHHHHHHhccCCCCCCCCcchH
Q 017569           21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTW--MEPECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        21 ~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~--~~~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      .+++..++. .+|+.|.+.+++++++.+.+.    .+.||+|  .++++++  .+..+.+++..++|.|...|..+|+..
T Consensus        41 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~  117 (481)
T 4e1o_A           41 GYLRAQLPE-SAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM--HAYYPALTSWPSLLGDMLADAINCLGFTWASSPACT  117 (481)
T ss_dssp             TTTGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHH
T ss_pred             HHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHH
Confidence            345667776 689999999999999999865    2678886  4555443  345678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCC-----CCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeEEecCCC
Q 017569           95 ELQNRCVNMIAHLFNTPVAD-----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNIVTGANV  163 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~-----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~Vi~s~~~  163 (369)
                      ++|+++.+|+++++|.+.++     .....|++|+|||+||+++++++++++..+.+..|+..      .+.+|++++.+
T Consensus       118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~  197 (481)
T 4e1o_A          118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQA  197 (481)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTS
T ss_pred             HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcc
Confidence            99999999999999998531     00125899999999999999999987654433333221      24589999999


Q ss_pred             cchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCC
Q 017569          164 QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (369)
Q Consensus       164 h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~  237 (369)
                      |+++.+++++.|++++.||+++ +++||+++|+++|+++      |++|++++++|++|.++|+++|+++|+++      
T Consensus       198 H~s~~~~~~~~g~~~~~v~~~~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~------  270 (481)
T 4e1o_A          198 HSSVEKAGLISLVKMKFLPVDD-NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICARE------  270 (481)
T ss_dssp             CHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------
T ss_pred             hHHHHHHHHhCCCceEEEEcCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHc------
Confidence            9999999999999999999986 4899999999999864      78899999999999999999999999999      


Q ss_pred             CceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-----
Q 017569          238 DTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-----  311 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-----  311 (369)
                      ++|+|||+||+++.+  ..++.+.... +..+|++++|+|||+++|+|+|+++++++..+...+.....|+....     
T Consensus       271 ~~~lhvDaA~g~~~~--~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~  348 (481)
T 4e1o_A          271 GLWLHIDAAYAGTAF--LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVAT  348 (481)
T ss_dssp             TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSC
T ss_pred             CCeEEeehhhHHHHH--hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCC
Confidence            999999999998765  3444333332 44679999999999999999999999987654444444556664321     


Q ss_pred             --CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          312 --PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       312 --~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                        .+++++++|+.. ++++|++++.+|.+|++++  ++.++|+++++.|++.+.|
T Consensus       349 ~~~~~~~~~~r~~~-~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  402 (481)
T 4e1o_A          349 DFMHWQIPLSRRFR-SVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSF  402 (481)
T ss_dssp             CGGGGSSSSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             CcccccccCCCCcc-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence              235678898865 8999999999999999998  9999999999999998544

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=9.2e-44  Score=353.35  Aligned_cols=327  Identities=18%  Similarity=0.197  Sum_probs=256.2

Q ss_pred             hHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCC--hHHHHHHHHHHhccCCCCCCCCcchHH
Q 017569           22 YVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPVTTE   95 (369)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~--~~~v~~~~~~~~~~n~~~~~~~~~~~~   95 (369)
                      +++..++. .+|+.|.+.+++++++.+.+.    .+.||+|  .++++++.  +..+.+++..++|.|...|..+|...+
T Consensus        37 ~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~  113 (475)
T 3k40_A           37 YLKPLIPD-AAPEKPEKWQDVMQDIERVIMPGVTHWHSPKF--HAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTE  113 (475)
T ss_dssp             CSGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTB--CCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHH
T ss_pred             HHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCCCCCcCc--eeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHH
Confidence            45666775 799999999999999999765    2678987  45554433  356789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC----CCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeEEecCCCcc
Q 017569           96 LQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNIVTGANVQV  165 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~Vi~s~~~h~  165 (369)
                      +|+++.+|+++++|.+.++    .....+++|+|||+||+++++++|+++..+.+..|+..      .+++|+++..+|+
T Consensus       114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~  193 (475)
T 3k40_A          114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS  193 (475)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH
T ss_pred             HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH
Confidence            9999999999999998521    01125899999999999999999887654332222211      1247999999999


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCc
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~  239 (369)
                      ++.+++++.|++++.||++++ + ||+++|+++|+++      |++|+++.++|++|.++|+++|+++|+++      ++
T Consensus       194 s~~~~~~~~g~~~~~v~~d~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~------~~  265 (475)
T 3k40_A          194 SVERAGLLGGVKLRSVQSENH-R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH------NL  265 (475)
T ss_dssp             HHHHHHHHHTCEEEEECCBTT-B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT------TC
T ss_pred             HHHHHHHHcCCceEEEECCCC-C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh------CC
Confidence            999999999999999999875 8 9999999999875      67899999999999999999999999999      99


Q ss_pred             eEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-------
Q 017569          240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------  311 (369)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-------  311 (369)
                      |+|||+||+++..  ..++.+..+. +..+|++++|+|||+++|.|+|+++++++..+...+...+.|+....       
T Consensus       266 ~lhvD~A~~~~~~--~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~  343 (475)
T 3k40_A          266 WIHVDAAYAGSAF--ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDY  343 (475)
T ss_dssp             EEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------
T ss_pred             eEEEeHHhHHHHH--hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCc
Confidence            9999999998654  3443333333 44689999999999999999999999987665555545566664321       


Q ss_pred             CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          312 PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       312 ~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ..++++++|++. ++++|++|+.+|.+|++++  ++.++|++++++|++.+.|
T Consensus       344 ~~~~~~~sr~~~-~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~  395 (475)
T 3k40_A          344 RHWQIPLGRRFR-ALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRF  395 (475)
T ss_dssp             -----CCCGGGT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred             ccccccCCCccc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            245678899865 8999999999999999998  9999999999999998544

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=4.8e-42  Score=343.92  Aligned_cols=324  Identities=17%  Similarity=0.183  Sum_probs=265.7

Q ss_pred             Hhhh---CCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCccccccccCCC--hHHHHHHHHHHhccCCCCCCCCcchH
Q 017569           23 VRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        23 ~~~~---~~~~~~p~~~~~~~~i~~~l~~~~~~---~~~p~~~l~~~~~~~~--~~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      ++..   ++ .++|+.|.+.+++++++++++..   +.||+|  .++++++.  +..+.+++.++++.+...|..+|+..
T Consensus        58 l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f--~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~  134 (511)
T 3vp6_A           58 LLEGMEGFN-LELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFV  134 (511)
T ss_dssp             HHHCBTTBC-CCCCSSCCCHHHHHHHHHHHHHTSCCTTSTTE--ESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHH
T ss_pred             HHHHHhhCC-CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCc--eEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHH
Confidence            4455   44 47899999999999999887753   567876  45666544  24568999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHHhh
Q 017569           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARY  173 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~Vi~s~~~h~s~~~~~~~  173 (369)
                      ++|+++++|+++++|++.+   ...+++|+|||+||+.++.++++.+..+....|.. ..+.+|++|..+|+++.++++.
T Consensus       135 ~le~~~~~~l~~~~g~~~~---~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~  211 (511)
T 3vp6_A          135 LMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA  211 (511)
T ss_dssp             HHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCC---CCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHH
Confidence            9999999999999999852   24699999999999999999987542111122321 1245899999999999999999


Q ss_pred             hcc---eeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          174 FEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       174 ~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      +|+   .++.||++++ ++||+++|+++|+++      |++|++++|+|++|.++|+++|+++|+++      ++|+|||
T Consensus       212 ~g~g~~~~~~v~~d~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~------~~~lhvD  284 (511)
T 3vp6_A          212 LGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY------NLWLHVD  284 (511)
T ss_dssp             TTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH------TCEEEEE
T ss_pred             cCCCCCcEEEeecCCC-CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc------CCEEEEE
Confidence            998   8999999874 999999999999875      88999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC---------CCc
Q 017569          245 AASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---------PTF  314 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~---------~~~  314 (369)
                      +||+++.+  ..++.+..+. +.++|++++++|||+++|.++|+++++++..+...+...+.|+....         ..+
T Consensus       285 ~a~~~~~~--~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  362 (511)
T 3vp6_A          285 AAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK  362 (511)
T ss_dssp             ETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred             ccchhhHh--hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence            99999876  4555555554 56789999999999999999999999987665444444566664321         235


Q ss_pred             cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          315 TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       315 ~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      +++++|++. ++++|++|+.+|.+|++++  ++.++++|++++|++.+-|
T Consensus       363 ~~~~~r~~~-al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~  411 (511)
T 3vp6_A          363 AIQCGRHVD-IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF  411 (511)
T ss_dssp             SSCSSCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTE
T ss_pred             CCCCCCchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            678898875 8999999999999999998  9999999999999987444

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=9.1e-41  Score=332.62  Aligned_cols=328  Identities=20%  Similarity=0.245  Sum_probs=253.3

Q ss_pred             hHhhhCCCCCCCCCCCCHHHHHHHHHHhhhh----cCCCCccccccccCCC--hHHHHHHHHHHhccCCCCCCCCcchHH
Q 017569           22 YVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDMDEYPVTTE   95 (369)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~----~~~p~~~l~~~~~~~~--~~~v~~~~~~~~~~n~~~~~~~~~~~~   95 (369)
                      .++..++. .+|+.|.+.+++++.+.+.+..    +.||+|  .+|.++..  +..+.+++.+++|.+...|..++...+
T Consensus        37 ~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  113 (486)
T 1js3_A           37 YLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTE  113 (486)
T ss_dssp             CSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHH
T ss_pred             HHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc--eEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHH
Confidence            35566765 6899999999999999986642    567876  34555433  345889999999988888888899999


Q ss_pred             HHHHHHHHHHHHhCCCCCCC----CCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc-CCC-----CCCCeEEecCCCcc
Q 017569           96 LQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ-GKP-----YDKPNIVTGANVQV  165 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~----~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~-g~~-----~~~~~Vi~s~~~h~  165 (369)
                      +|+++++|+++++|++.++.    ....+++|+|||+||+++++++++.+..+.+.. |.-     ..+..|+++.++|+
T Consensus       114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~  193 (486)
T 1js3_A          114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (486)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcH
Confidence            99999999999999985210    013589999999999999999887543222111 100     00124889999999


Q ss_pred             hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcC------cEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCc
Q 017569          166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~------~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~  239 (369)
                      ++.++++.+|++++.||+++ ++.||+++|+++|++++      ++|++++|+|++|.++|+++|+++|+++      ++
T Consensus       194 s~~~~~~~~G~~v~~v~~d~-~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~------~~  266 (486)
T 1js3_A          194 SVERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE------DI  266 (486)
T ss_dssp             HHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT------TC
T ss_pred             HHHHHHHhCCCceEEeecCC-CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc------CC
Confidence            99999999999999999975 59999999999998765      4899999999999999999999999999      99


Q ss_pred             eEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC-------
Q 017569          240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ-------  311 (369)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~-------  311 (369)
                      |+|||+||+++.+  ..++.+..+. +.++|++++|+|||+++|+++|+++++++..+...+...+.|+....       
T Consensus       267 ~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~  344 (486)
T 1js3_A          267 WLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT  344 (486)
T ss_dssp             EEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCC
T ss_pred             EEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCC
Confidence            9999999998765  3343333222 45799999999999999999999999876543334433445553311       


Q ss_pred             --CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          312 --PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       312 --~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                        ..++++++|+.. ++++|++++.+|.+|++++  ++.+++++++++|++.+-|
T Consensus       345 ~~~~~~~~~~rr~~-~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~  398 (486)
T 1js3_A          345 DYRHWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRF  398 (486)
T ss_dssp             CGGGSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             CccccCCCCCCchh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence              124566788775 8999999999999999998  8999999999999987544

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=4.3e-40  Score=329.30  Aligned_cols=325  Identities=16%  Similarity=0.169  Sum_probs=256.7

Q ss_pred             hHhhh---CCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCccccccccCCChH--HHHHHHHHHhccCCCCCCCCcch
Q 017569           22 YVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEP--ECDKLVMASINKNYVDMDEYPVT   93 (369)
Q Consensus        22 ~~~~~---~~~~~~p~~~~~~~~i~~~l~~~~~~---~~~p~~~l~~~~~~~~~~--~v~~~~~~~~~~n~~~~~~~~~~   93 (369)
                      .++..   ++. .+|+.|.+.+++++.+++.+..   ..||+|  .++.+++..+  .+.+++..++|.|...|..++..
T Consensus        54 ~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  130 (504)
T 2okj_A           54 QLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVF  130 (504)
T ss_dssp             HHHSCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTCTTE--ESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHH
T ss_pred             HHHHHhhccCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCE--EEEccCCCCHHHHHHHHHHHhhccCCCchhhChHH
Confidence            34555   553 7899999999999999887653   357876  3555554433  34688888889998888888999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHHh
Q 017569           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFAR  172 (369)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~Vi~s~~~h~s~~~~~~  172 (369)
                      .++|+++++|+++++|++.+   ...+++|+|||+||+++++++++.+....+..|.. ..+.+|+++..+|+++.++++
T Consensus       131 ~~le~~~~~~la~~~g~~~~---~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~  207 (504)
T 2okj_A          131 VLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA  207 (504)
T ss_dssp             HHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCC---CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH
Confidence            99999999999999999831   14599999999999999999876421100112211 112379999999999999999


Q ss_pred             hhcc---eeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEe
Q 017569          173 YFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       173 ~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                      .+|+   +++.||++++ +++|+++|+++|++      +|++|++++|+|++|.++|+++|+++|+++      ++|+||
T Consensus       208 ~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~------g~~lhv  280 (504)
T 2okj_A          208 ALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY------NLWLHV  280 (504)
T ss_dssp             HTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH------TCEEEE
T ss_pred             HcCCCcccEEEEecCCC-CCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc------CCEEEE
Confidence            9887   7899999764 99999999999987      589999999999999999999999999999      999999


Q ss_pred             ecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC---------CC
Q 017569          244 DAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ---------PT  313 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~---------~~  313 (369)
                      |+||+++..  ..++.+..+. +.++|++++|+|||+++|+++|++++++++.+...+...+.|+.+..         .+
T Consensus       281 D~a~~~~~~--~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (504)
T 2okj_A          281 DAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGD  358 (504)
T ss_dssp             EETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGG
T ss_pred             ehhhhhHHH--hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCccc
Confidence            999998776  3444444444 45899999999999999999999999986554333333456663221         12


Q ss_pred             ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          314 FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       314 ~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ++++++|++. ++++|++++.+|.+|++++  ++.++++++++.|++.+-|
T Consensus       359 ~~~~~~rr~~-~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~  408 (504)
T 2okj_A          359 KAIQCGRHVD-IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF  408 (504)
T ss_dssp             GSSCSSCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             CCCCCCCCcc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            3457888875 8999999999999999988  8999999999999987444

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=320.81  Aligned_cols=323  Identities=14%  Similarity=0.140  Sum_probs=250.0

Q ss_pred             hHhhhCCCCCCCCCCCCHHHHHHHHHHhhhh---cCCCCccccccccCCCh-H-HHHHHHHHHhccCCCCCCCCcchHHH
Q 017569           22 YVRAAIPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWME-P-ECDKLVMASINKNYVDMDEYPVTTEL   96 (369)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~---~~~p~~~l~~~~~~~~~-~-~v~~~~~~~~~~n~~~~~~~~~~~~l   96 (369)
                      .++..++ ..+|+.|.+.+++++.+++....   ..||+|  ..+.+++.. . .+.+++..++|.+...|..+++..++
T Consensus        73 ~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~l  149 (515)
T 2jis_A           73 ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRF--FNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLM  149 (515)
T ss_dssp             HHHHHHC-CCCCSSCCCHHHHHHHHHHHHHHSCCTTSTTE--ESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHH
T ss_pred             HHHhhcc-cCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCe--EEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHH
Confidence            3455555 46899999999999999887654   347765  345555443 3 34577877788888888889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCCeEEecCCCcchHHHHHhhhc
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYFE  175 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~-~~~~~Vi~s~~~h~s~~~~~~~~G  175 (369)
                      |+++++|+++++|++.     ..+++|+|||+||++++.++++.+.......|.. ..+.+|++++.+|+++.++++.+|
T Consensus       150 e~~~~~~la~l~g~~~-----~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g  224 (515)
T 2jis_A          150 EEEVLRKLRALVGWSS-----GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLG  224 (515)
T ss_dssp             HHHHHHHHHHHHTCSS-----CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCC-----CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcC
Confidence            9999999999999984     3599999999999999999876431100011210 112389999999999999999999


Q ss_pred             c---eeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          176 V---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       176 ~---~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      +   +++.||+++ ++.+|+++|+++|++      +|++|++++|+|++|.++|+++|+++|+++      ++|+|||+|
T Consensus       225 ~g~~~v~~v~~~~-~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~------g~~l~vD~a  297 (515)
T 2jis_A          225 LGTDSVRVVKADE-RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH------GLWLHVDAA  297 (515)
T ss_dssp             SCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEEET
T ss_pred             CCCCcEEEEecCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc------CCeEEEehh
Confidence            8   899999986 489999999999986      489999999999999999999999999999      999999999


Q ss_pred             cccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCC-CCcccccccccCccCCC---------CCCcc
Q 017569          247 SGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTK-DDLPDELVFHINYLGSD---------QPTFT  315 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~-~~~~~~~~~~~~y~~~~---------~~~~~  315 (369)
                      |+++..  ..+.....+. +.++|++++|+|||+++|.|+|+++++++ ..+...+...+.|+.+.         ..+++
T Consensus       298 ~~~~~~--~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  375 (515)
T 2jis_A          298 WGGSVL--LSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV  375 (515)
T ss_dssp             TGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGC
T ss_pred             hhhHHH--hChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCC
Confidence            998876  3343333344 45889999999999999999999999986 44433333345565221         11245


Q ss_pred             ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          316 LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       316 l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ++++|+.. ++++|++++.+|.+|++++  ++.+++++++++|++.+-|
T Consensus       376 ~~~~rr~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~  423 (515)
T 2jis_A          376 VQCGRRVD-CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGF  423 (515)
T ss_dssp             SCSSCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             CCCCCccc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            67788775 7999999999999999988  8999999999999987443

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=3.5e-38  Score=314.96  Aligned_cols=324  Identities=18%  Similarity=0.261  Sum_probs=247.2

Q ss_pred             hHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCChHHH-HHHHHHHhccCCCCCCCCcchHHH
Q 017569           22 YVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWMEPEC-DKLVMASINKNYVDMDEYPVTTEL   96 (369)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~~~~v-~~~~~~~~~~n~~~~~~~~~~~~l   96 (369)
                      .++..++...+|+.|.+.+++++++.+.+.    .+.||+| |..+.+++.++.+ .+++..++|.+...|..++...++
T Consensus        63 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~l  141 (497)
T 2qma_A           63 ALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDC-IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYV  141 (497)
T ss_dssp             HHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTB-CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHH
T ss_pred             HHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe-eEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHH
Confidence            355667766689999999999999987654    2567876 4444444555554 555566777777778888899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH-----HhcCCCC--CCCeEEecCCCcchHHH
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR-----KEQGKPY--DKPNIVTGANVQVCWEK  169 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~-----~~~g~~~--~~~~Vi~s~~~h~s~~~  169 (369)
                      |+++++|+++++|++.    ...+++|+|||+||.++++++|+.+..++     ...|.+.  .+.+|+++..+|+++.+
T Consensus       142 e~~~~~~la~~~g~~~----~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~  217 (497)
T 2qma_A          142 EQKVVNWLCDKYDLSE----KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQK  217 (497)
T ss_dssp             HHHHHHHHHHHTTCCT----TCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHH
T ss_pred             HHHHHHHHHHHhCCCC----CCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHH
Confidence            9999999999999974    13599999999999999999876543211     0122211  12379999999999999


Q ss_pred             HHhhhcc---eeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          170 FARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       170 ~~~~~G~---~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      +++.+|.   +++.||++++ +++|+++|+++|+++      +.+|+++.|+|++|.++|+++|+++|+++      ++|
T Consensus       218 ~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~------~~~  290 (497)
T 2qma_A          218 SASWMGLGEKAVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH------DMW  290 (497)
T ss_dssp             HHHHTTSCGGGEEEECBCTT-SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCE
T ss_pred             HHHHcCCCcccEEEEecCCC-CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc------CCE
Confidence            9999987   7899999864 999999999999864      44889999999999999999999999999      999


Q ss_pred             EEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCC------CC
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ------PT  313 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~------~~  313 (369)
                      +|||+||+++..+  .+ ....+. +..+|++++|+|||+++|+++|+++++++..+ ..+.....|+....      ..
T Consensus       291 l~vD~a~~~~~~~--~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~  366 (497)
T 2qma_A          291 MHVDGAYGGALIL--SS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELPNLVD  366 (497)
T ss_dssp             EEEEETTGGGGGG--ST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC-----------------
T ss_pred             EEEehhhhHHHHh--Cc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCccccCCCccc
Confidence            9999999987763  22 222232 34789999999999999999999999887544 23333445653221      23


Q ss_pred             ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          314 FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       314 ~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ++++++|+.. ++++|++++.+|.+|++++  ++.+++++|++.|++.+.|
T Consensus       367 ~~~~~~r~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~  416 (497)
T 2qma_A          367 KSIATTKRFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQF  416 (497)
T ss_dssp             ---CCSCCCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             cCCCCCCchh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            4557888875 8899999999999999988  8999999999999987544

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-36  Score=299.80  Aligned_cols=313  Identities=23%  Similarity=0.361  Sum_probs=249.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhhh-c----CCCCccccccccCCChHHHHHHHHHHhcc----CCCCCCCCcchHHHHHHH
Q 017569           30 FKMPDNSMPKEAAYQVINDELML-D----GNPRLNLASFVTTWMEPECDKLVMASINK----NYVDMDEYPVTTELQNRC  100 (369)
Q Consensus        30 ~~~p~~~~~~~~i~~~l~~~~~~-~----~~p~~~l~~~~~~~~~~~v~~~~~~~~~~----n~~~~~~~~~~~~le~~~  100 (369)
                      ..+|+.|.+.+++++.+++.... .    .++++  .++.... ++.+.+++.++++.    |..+|..+++..++|+++
T Consensus        36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (497)
T 3mc6_A           36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKV--SGAVYHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEV  112 (497)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCB--SSSCSCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCE--eeecCCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHH
Confidence            46899999999999999988764 2    23333  2222222 24555555555543    778888889999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEE
Q 017569          101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE  180 (369)
Q Consensus       101 ~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~  180 (369)
                      ++|+++++|++.+   ...+++++||++|+.+++.++++....+   .|  ..+++|+++.++|.++.++++.+|++++.
T Consensus       113 ~~~la~~~g~~~~---~~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g--~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~  184 (497)
T 3mc6_A          113 VSMVLRMFNAPSD---TGCGTTTSGGTESLLLACLSAKMYALHH---RG--ITEPEIIAPVTAHAGFDKAAYYFGMKLRH  184 (497)
T ss_dssp             HHHHHHHTTCCTT---TCCEEEESSHHHHHHHHHHHHHHHHHHH---SC--CSSCEEEEETTSCHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHhCCCCC---CCeEEEcCcHHHHHHHHHHHHHHHHHhc---CC--CCCceEEEeCCccHHHHHHHHHcCCeEEE
Confidence            9999999999831   2459999999999999999988753321   22  22468999999999999999999999999


Q ss_pred             EeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC---
Q 017569          181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---  257 (369)
Q Consensus       181 v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---  257 (369)
                      ||++++++.+|+++|+++++++|++|++++|+|++|.++|+++|+++|+++      |+|+|+|+||+++..+|...   
T Consensus       185 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~livD~a~~~~~~~f~~~~~~  258 (497)
T 3mc6_A          185 VELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY------KLPLHVDSCLGSFIVSFMEKAGY  258 (497)
T ss_dssp             ECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT------TCCEEEETTTTHHHHGGGTTTTC
T ss_pred             EecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh------CCEEEEECcchhhhhhhhhhhcc
Confidence            999874589999999999999999999999999999999999999999999      99999999999877665431   


Q ss_pred             -Cc-cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh
Q 017569          258 -DL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (369)
Q Consensus       258 -~~-~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l  335 (369)
                       .. ++++...++|+++.++|||+++|.++|+++++++............|.++....+++.|+|++...+++|++++.+
T Consensus       259 ~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l  338 (497)
T 3mc6_A          259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNM  338 (497)
T ss_dssp             CSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHH
T ss_pred             cCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHH
Confidence             11 3445567899999999999999999999998875332222223345555443455667899988889999999999


Q ss_pred             cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          336 GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       336 g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +.+|++++  ++.+++++++++|++.
T Consensus       339 ~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (497)
T 3mc6_A          339 GENGYIESCQEIVGAAMKFKKYIQEN  364 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999887  8999999999999994

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.3e-33  Score=271.57  Aligned_cols=314  Identities=21%  Similarity=0.296  Sum_probs=250.8

Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhcC---CCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHH
Q 017569           31 KMPDNSMPKEAAYQVINDELMLDG---NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHL  107 (369)
Q Consensus        31 ~~p~~~~~~~~i~~~l~~~~~~~~---~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l  107 (369)
                      .+|+.+.+.+++++.+.+......   +|.+  .+..++++++.+.+++.+++..+..++..+++..+++++++++++++
T Consensus         4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~   81 (397)
T 3f9t_A            4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNI--FGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSL   81 (397)
T ss_dssp             SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCB--CSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHhhccCCCCCCCCe--EEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHH
Confidence            589999999999999998765422   2333  34445555677889999988877666666678899999999999999


Q ss_pred             hCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCc
Q 017569          108 FNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGY  187 (369)
Q Consensus       108 ~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~  187 (369)
                      +|++.     ..+++|+||++|+..++.+++.++..++........+++|+++.++|.++..+++..|++++.+|++++ 
T Consensus        82 ~~~~~-----~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-  155 (397)
T 3f9t_A           82 LNNKD-----AYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-  155 (397)
T ss_dssp             TTCTT-----CEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT-
T ss_pred             hCCCC-----CCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC-
Confidence            99986     348999999999999999998765544322211223579999999999999999999999999999875 


Q ss_pred             cccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC-------Cc
Q 017569          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DL  259 (369)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-------~~  259 (369)
                      +.+|+++|++++++ ++++|+++.|+||+|.+.|+++|.++|+++      ++++|+|++|+++..++...       ..
T Consensus       156 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~~~~~~~~~~~~~  229 (397)
T 3f9t_A          156 YTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN------NIYIHVDAAFGGLVIPFLDDKYKKKGVNY  229 (397)
T ss_dssp             SSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTGGGTGGGCCGGGCCTTCCC
T ss_pred             CcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh------CCeEEEEccccchhhhhcccccccccccc
Confidence            89999999999999 899999999999999999999999999999      99999999999876654332       11


Q ss_pred             cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh
Q 017569          260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV  339 (369)
Q Consensus       260 ~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G  339 (369)
                      .+++.. ++|+++.++||++++|.++|+++++++... ..+.....|..... +..+.+++++...+++|+++..++.++
T Consensus       230 ~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~  306 (397)
T 3f9t_A          230 KFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-QATILGTRVGFGGACTYAVLRYLGREG  306 (397)
T ss_dssp             CCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-ECSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-ccccccccccchHHHHHHHHHHHhHHH
Confidence            334445 899999999999999999999999876443 23322234443321 233457888777899999999999889


Q ss_pred             HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          340 IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       340 ~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.++  +..++++++++.|++.|+
T Consensus       307 ~~~~~~~~~~~~~~l~~~L~~~g~  330 (397)
T 3f9t_A          307 QRKIVNECMENTLYLYKKLKENNF  330 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Confidence            8888  888999999999998854

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=1.6e-34  Score=289.47  Aligned_cols=318  Identities=21%  Similarity=0.265  Sum_probs=251.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccCCC---hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHH
Q 017569           30 FKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWM---EPECDKLVMASINKNYVDMDEYPVTTELQNRCVN  102 (369)
Q Consensus        30 ~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~~~---~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~  102 (369)
                      ..+|+.|.+.+++++.+++...    .+.++.+  .++.....   .+.+.+++...++.|...+..+++..++|+++++
T Consensus        69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~  146 (514)
T 3mad_A           69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYA--SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVA  146 (514)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCB--SSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCce--EEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHH
Confidence            3678999999999999988753    2445554  22222221   2456677777777888888888999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEe
Q 017569          103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK  182 (369)
Q Consensus       103 ~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~  182 (369)
                      |+++++|++.+. ....+++|+||++|+.+++.+++++...++   |  ..+++|+++.++|.++.++++.+|++++.||
T Consensus       147 ~la~~~g~~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~~---g--~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~  220 (514)
T 3mad_A          147 MTAHMLGGDAAG-GTVCGTVTSGGTESLLLAMKTYRDWARATK---G--ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTP  220 (514)
T ss_dssp             HHHHHTTGGGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHHH---C--CSSCEEEEETTSCTHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHcCCCCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhhc---C--CCCCeEEEeCccchHHHHHHHHcCCeeEEee
Confidence            999999998311 123459999999999999999987533211   2  2347999999999999999999999999999


Q ss_pred             ccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccC----CC
Q 017569          183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY----PD  258 (369)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~----~~  258 (369)
                      +++ ++.+|+++|+++|++++++|+++.++||+|.++|+++|+++|+++      ++|+|+|+||+++..++..    +.
T Consensus       221 ~~~-~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~i~livDea~~~~~~~~~~~~g~~~  293 (514)
T 3mad_A          221 LDA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH------GIGCHVDACLGGFILPWAERLGYPV  293 (514)
T ss_dssp             BCT-TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred             eCC-CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh------CCeEEEecccccccchhHHhcCCCC
Confidence            987 489999999999999999999999999999999999999999999      9999999999987664322    11


Q ss_pred             ccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh
Q 017569          259 LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE  338 (369)
Q Consensus       259 ~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~  338 (369)
                      ..+++...++|++++++|||+++|.++|+++++++............|.++....+++.|++++..++++|++++.++.+
T Consensus       294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~  373 (514)
T 3mad_A          294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE  373 (514)
T ss_dssp             CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence            23444566899999999999999999999999875433222222334444333344567899888889999999999999


Q ss_pred             hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          339 VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       339 G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      |++++  +..+++++++++|++.+.+
T Consensus       374 ~~~~~~~~~~~~~~~l~~~L~~~~g~  399 (514)
T 3mad_A          374 GYLDATRRILQAADRLKAGVRAIPSL  399 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            99888  8999999999999987433

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.98  E-value=3.5e-32  Score=268.74  Aligned_cols=297  Identities=15%  Similarity=0.119  Sum_probs=217.3

Q ss_pred             HhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHH-----hccCC-----C----CCC
Q 017569           23 VRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMAS-----INKNY-----V----DMD   88 (369)
Q Consensus        23 ~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~-----~~~n~-----~----~~~   88 (369)
                      +++.++..++|+.|.+.+++.+.+++....+....++  ...+++.++.+.+.+...     .+.+.     .    .+.
T Consensus        49 ~~~~~~~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld--~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (456)
T 2z67_A           49 IEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPK--SVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKAS  126 (456)
T ss_dssp             HHHHHHHCSCCSSCCCHHHHHHHHHHHHTTBGGGCTT--CEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBH
T ss_pred             HHHhhccCCCCCCCCCHHHHHHHHHHHHhcccccccc--ccccccccccccccccCccccccCCCccHHHHHHhhCcccc
Confidence            4555666689999999999988887765544322222  222333344444444331     11111     0    112


Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH
Q 017569           89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW  167 (369)
Q Consensus        89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~  167 (369)
                      .++...++++++++++++++|++.     . +++|+||| .+|..++.+++.. .          .++.|+++.++|+++
T Consensus       127 ~~~~~~~~~~~~~~~la~~~g~~~-----~-~~~t~g~te~a~~~al~~~~~~-~----------~~~~vi~~~~~h~s~  189 (456)
T 2z67_A          127 GASIMYALTNKILESFFKQLGLNV-----H-AIATPISTGMSISLCLSAARKK-Y----------GSNVVIYPYASHKSP  189 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-----E-EEEESSCHHHHHHHHHHHHHHH-H----------CCCEEEEECCCCHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHcCCCC-----C-EEEeCcHHHHHHHHHHHHHHHh-c----------CCCEEEEECCCcHHH
Confidence            223578899999999999999985     2 89999999 5776677776542 0          135788899999999


Q ss_pred             HHHHhhhcceeEEEecc--CCccccCHHHHHHHH-h----hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCce
Q 017569          168 EKFARYFEVELKEVKLE--EGYYVMNPVKAVELV-D----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP  240 (369)
Q Consensus       168 ~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i-~----~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~  240 (369)
                      .++++..|++++.+++.  ++++.+|+++|+++| +    .++++|+++.|+|++|.++|+++|+++|+++      ++|
T Consensus       190 ~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~------g~~  263 (456)
T 2z67_A          190 IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIP  263 (456)
T ss_dssp             HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCC
T ss_pred             HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc------CCc
Confidence            99999999999998873  235899999999999 5    3677888999999999999999999999999      999


Q ss_pred             EEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCc
Q 017569          241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK  320 (369)
Q Consensus       241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr  320 (369)
                      +|||+||+....++. +.....+.. ++|++++|+|||+++|.|+|++++|+++.+. .+  .+.|.          |.+
T Consensus       264 v~vD~A~~~~~~g~~-~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~-~l--~~~~~----------g~~  328 (456)
T 2z67_A          264 HIINGAYAIQNNYYL-EKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK-EI--SLSYP----------GRA  328 (456)
T ss_dssp             EEEECTTTTTCHHHH-HHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHH-HH--HTTSC----------SCB
T ss_pred             EEEECcchHHHHHhh-HHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHh-hc--CcCCC----------CCC
Confidence            999999987654321 110111112 7999999999999999999999997654332 21  23333          233


Q ss_pred             chhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          321 GSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       321 ~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++..++++|+++..+|.+|++++  +..+++++++++|++.
T Consensus       329 ~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  369 (456)
T 2z67_A          329 SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  369 (456)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34458899999999999999888  9999999999999987

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.98  E-value=3.9e-32  Score=264.15  Aligned_cols=296  Identities=13%  Similarity=0.045  Sum_probs=214.0

Q ss_pred             HhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCC------------CCccccc--------cccCCChHHHHHHHHHHhcc
Q 017569           23 VRAAIPRFKMPDNSMPKEAAYQVINDELMLDGN------------PRLNLAS--------FVTTWMEPECDKLVMASINK   82 (369)
Q Consensus        23 ~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~------------p~~~l~~--------~~~~~~~~~v~~~~~~~~~~   82 (369)
                      ++..+..-.+|+.|.+.++|+..+.+...++.+            .++ +++        |+++.  ....|++..    
T Consensus        14 ~~~~~~~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv-~~~~~~~r~~g~~hg~--~~~~d~l~~----   86 (450)
T 3bc8_A           14 IRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV-ASALVARRHYRFIHGI--GRSGDISAV----   86 (450)
T ss_dssp             HHHHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCC-SCHHHHHHTTTCCSCB--CC-----------
T ss_pred             HHHHHHhccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceE-ecccccCCccceecch--hHHHHHHHh----
Confidence            345555568999999999999999987664321            121 122        22221  112233332    


Q ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC
Q 017569           83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA  161 (369)
Q Consensus        83 n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt-~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~  161 (369)
                      |. .+..+|+..++|+.+..|+.+++|++..    ..+++++|+| .++.+++.+++...          ..++.|+++.
T Consensus        87 ~~-~~~~~~~~~~~e~~~~~~~~~~lGlp~~----~~~~lV~GaT~~~~a~~L~aar~~~----------~~~~~viv~r  151 (450)
T 3bc8_A           87 QP-KAAGSSLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHKR----------PKAKYIIWPR  151 (450)
T ss_dssp             CC-SBHHHHHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHHC----------TTCCEEEEEC
T ss_pred             Cc-cccCCcHHHHHHHHHHHHHHHhCCCCCC----ceEEEECCHHHHHHHHHHHHcchhh----------cCCCEEEEEC
Confidence            44 4556678899999999999999999863    4569999998 77766766666531          1136899999


Q ss_pred             CCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhhc----CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhcc
Q 017569          162 NVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDEN----TICVAAILGSTLTGEFEDVKLLHDLLTKKNEET  235 (369)
Q Consensus       162 ~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~  235 (369)
                      ..|.|+.+++.++|++++.|+..  ++.+.||+++|+++|++.    +.+|+.+.+++.+|.++|+++|+++|+++    
T Consensus       152 ~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~----  227 (450)
T 3bc8_A          152 IDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY----  227 (450)
T ss_dssp             CCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH----
T ss_pred             CcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC----
Confidence            99999999999999998888762  346899999999999763    34455544444467899999999999999    


Q ss_pred             CCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCcc
Q 017569          236 GWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT  315 (369)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~  315 (369)
                        |+|+|||+|||+... +..+.++..+...++|+++.|+|||+++|.+++++++|+++.+...   ...|.+       
T Consensus       228 --gi~l~VD~A~G~~~~-~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g-------  294 (450)
T 3bc8_A          228 --DIPHVVNNAYGLQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPG-------  294 (450)
T ss_dssp             --TCCEEEECTTTTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCS-------
T ss_pred             --CCeEEEECCCchhhh-hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhc-------
Confidence              999999999997654 1111111111125899999999999999999999999876544221   123332       


Q ss_pred             ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          316 LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       316 l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                         ..+..+++.+|.++..+|.+|++++  ++++++++++++|++.+
T Consensus       295 ---~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          295 ---RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA  338 (450)
T ss_dssp             ---CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence               2223357999999999999999988  89999999999998765

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.95  E-value=3.3e-26  Score=226.95  Aligned_cols=302  Identities=10%  Similarity=0.012  Sum_probs=216.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhhhhcCC---CCccccccccCCChHHHHHHHHHHhc-cCCCCCC-CCcchHHHHHHHHHHH
Q 017569           30 FKMPDNSMPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVMASIN-KNYVDMD-EYPVTTELQNRCVNMI  104 (369)
Q Consensus        30 ~~~p~~~~~~~~i~~~l~~~~~~~~~---p~~~l~~~~~~~~~~~v~~~~~~~~~-~n~~~~~-~~~~~~~le~~~~~~l  104 (369)
                      ..+|  +.+..++++.+.++...+..   ..++|+ .++....|.+.+.+.+.+. .++..+. .+++..++++++++++
T Consensus        40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l  116 (474)
T 1wyu_B           40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL  116 (474)
T ss_dssp             CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred             CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence            4577  79999999999887654322   223455 4444433445544444332 2333332 3678899999999999


Q ss_pred             HHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc
Q 017569          105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE  184 (369)
Q Consensus       105 a~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~  184 (369)
                      ++++|++.      ..++++||++|+..++.+++....    ..|....+++|+++.++|.++..+++..|++++.||++
T Consensus       117 a~~~g~~~------~~~~~~ggt~a~~~al~~~~~~~~----~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~  186 (474)
T 1wyu_B          117 KALTGMDA------ITLEPAAGAHGELTGILIIRAYHE----DRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG  186 (474)
T ss_dssp             HHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHH----HTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred             HHHHCCCc------eeecChHHHHHHHHHHHHHHHHHH----hcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence            99999974      256889999999998888765321    12310124589999999999999999999999999998


Q ss_pred             CCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc
Q 017569          185 EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF  263 (369)
Q Consensus       185 ~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  263 (369)
                      ++ +.+|+++|++++++++++|++++| |++|.+ +|+++|+++|+++      ++++|+|++|+.+..+...      .
T Consensus       187 ~~-~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~------g~~li~Dea~~~~~~g~~~------~  252 (474)
T 1wyu_B          187 PE-GEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEA------GVQLYYDGANLNAIMGWAR------P  252 (474)
T ss_dssp             TT-SSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHH------TCEEEEEGGGGGGTTTTCC------H
T ss_pred             CC-CCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHc------CCEEEEeCchhhhhccCCC------c
Confidence            64 899999999999999999999998 579998 7999999999999      9999999999765532111      1


Q ss_pred             cCCCCcEEEEcCccCCCCCC-----CeEEEEEeCCCCcccccccc-c-----CccCC--CC---CCccccCCcchhHHHH
Q 017569          264 RLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFH-I-----NYLGS--DQ---PTFTLNFSKGSSQIIA  327 (369)
Q Consensus       264 ~~~~~Dsi~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~-~-----~y~~~--~~---~~~~l~~tr~~~~~l~  327 (369)
                      ...++|+++.|+||++++|.     ++|+++++++ .. +.+... .     .|...  ..   ... ..++.+....++
T Consensus       253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~a  329 (474)
T 1wyu_B          253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRPKSIGRV-RSFYGNFLALVR  329 (474)
T ss_dssp             HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCTTCCCCS-SSTTSCHHHHHH
T ss_pred             ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCCCeeeccCCeeEecccCcccCccc-ccCcCcHHHHHH
Confidence            11268999999999998885     6899999763 22 222100 0     01000  00   000 012233445677


Q ss_pred             HHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          328 QYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       328 ~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +|.+++.+|.++++++  +..+++++++++|++.|+
T Consensus       330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~  365 (474)
T 1wyu_B          330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGY  365 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            8888888899999887  899999999999998753

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=228.32  Aligned_cols=302  Identities=14%  Similarity=0.016  Sum_probs=209.9

Q ss_pred             HhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCc-cccccccCCChHHHHHHHHH-Hhc--cCC---CCC-CCCc---
Q 017569           23 VRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL-NLASFVTTWMEPECDKLVMA-SIN--KNY---VDM-DEYP---   91 (369)
Q Consensus        23 ~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~-~l~~~~~~~~~~~v~~~~~~-~~~--~n~---~~~-~~~~---   91 (369)
                      ++..|.+-++|+.|.+...|...+.++-.++.+... |.+.+.--.  .....++.+ .++  .+-   ++- +..|   
T Consensus        32 ~~~ll~~r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~--Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAa  109 (501)
T 3hl2_A           32 IRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREG--RVASALVARRHYRFIHGIGRSGDISAVQPKAA  109 (501)
T ss_dssp             HHHHHHHCCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCC--CCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBH
T ss_pred             HHHHHHcCCCCccCCCHHHHHHHHHHHHhhccCCCcccCCcccchH--HHHHHHHHhhccCcccCCCCccccccCCCCcc
Confidence            456677778999999999999999988776543221 111111100  112233332 121  111   110 1111   


Q ss_pred             c---hHHH-HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH
Q 017569           92 V---TTEL-QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW  167 (369)
Q Consensus        92 ~---~~~l-e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~  167 (369)
                      |   ..+| +..+.+|++.+ |++..    ....+++|+|.+++..+.++.++.+        + .+++||+|...|.|+
T Consensus       110 Gssll~~ltn~l~ld~L~~~-G~~~~----~~~flVnGsTgg~lamilaa~r~~r--------p-g~d~VIvpRn~HKSv  175 (501)
T 3hl2_A          110 GSSLLNKITNSLVLDIIKLA-GVHTV----ANCFVVPMATGMSLTLCFLTLRHKR--------P-KAKYIIWPRIDQKSC  175 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCTTC----CEEEEESSCHHHHHHHHHHHHHHHC--------T-TCCEEEEECCCCHHH
T ss_pred             chHHHHHHHHHHHHHHHHHc-CCCCC----CcEEEECcHHHHHHHHHHHHcCccc--------C-CCCEEEEecchHHHH
Confidence            2   2333 34566788877 99852    4578889999777676666655310        0 136899999999999


Q ss_pred             HHHHhhhcceeEEEec--cCCccccCHHHHHHHHhhc---CcEEEEeeCCCC-cccCCCHHHHHHHHHHhhhccCCCceE
Q 017569          168 EKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDEN---TICVAAILGSTL-TGEFEDVKLLHDLLTKKNEETGWDTPI  241 (369)
Q Consensus       168 ~~~~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~-tG~~~~l~~I~~l~~~~~~~~~~~~~l  241 (369)
                      .+++.+.|+.+++|+.  +++...+|+++|+++|++.   .++++++.+++. .+.++|+++|+++|+++      ++|+
T Consensus       176 ~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~------gIpl  249 (501)
T 3hl2_A          176 FKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY------DIPH  249 (501)
T ss_dssp             HHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH------TCCE
T ss_pred             HHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc------CCeE
Confidence            9999999999999976  3346899999999999874   344444444444 35779999999999999      9999


Q ss_pred             EeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcc
Q 017569          242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG  321 (369)
Q Consensus       242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~  321 (369)
                      |||+|||+...++ .+.+...+...++|.++.|+||++++|.|+++++.++++.+...   ...|.          |+++
T Consensus       250 lVDeAhGah~~~~-~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~yP----------Gr~S  315 (501)
T 3hl2_A          250 IVNNAYGVQSSKC-MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMYP----------GRAS  315 (501)
T ss_dssp             EEECTTCTTCHHH-HHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTSC----------SCBC
T ss_pred             EEeCcchhhhhhh-hhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HHhCC----------CCCC
Confidence            9999999866421 11111222233499999999999999999888888876544321   22332          5667


Q ss_pred             hhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          322 SSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       322 ~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.+++.+|++++.+|.+||+++  ++.++++||+++|++..
T Consensus       316 ~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la  356 (501)
T 3hl2_A          316 ASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLS  356 (501)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999  99999999999999853

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.94  E-value=6.4e-26  Score=219.52  Aligned_cols=269  Identities=12%  Similarity=0.020  Sum_probs=199.7

Q ss_pred             CCCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           55 NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        55 ~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      +|...+..-.|..+++.+.+++.+.+    .. ..++...++.+++++++++++|.+.+    ...++++||++|+..++
T Consensus        11 ~~~~~~~~pgp~~~~~~v~~a~~~~~----~~-~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~sgt~al~~~~   81 (411)
T 3nnk_A           11 PPSRLLMGPGPINADPRVLRAMSSQL----IG-QYDPAMTHYMNEVMALYRGVFRTENR----WTMLVDGTSRAGIEAIL   81 (411)
T ss_dssp             CCCCEEESSSCCCCCHHHHHHHTSCC----CC-TTCHHHHHHHHHHHHHHHHHHTCCCS----EEEEEESCHHHHHHHHH
T ss_pred             CccceeecCCCCCCCHHHHHHhhccc----cc-cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEECCCcHHHHHHHH
Confidence            34332333334445566666655432    11 12455667788999999999999852    23678889999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILG  211 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~  211 (369)
                      .++..+             +++|+++.++|++  +...++..|++++.+|++.+ +.+|+++|++++++ ++++|+++++
T Consensus        82 ~~~~~~-------------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~  147 (411)
T 3nnk_A           82 VSAIRP-------------GDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG-EVFTPDQVEDAVKRIRPRLLLTVQG  147 (411)
T ss_dssp             HHHCCT-------------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred             HHhcCC-------------CCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHhhCCCeEEEEeCC
Confidence            887432             4799999999988  88888999999999999764 89999999999987 8999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      +||+|.+.|+++|+++|+++      ++++|+|++++.+..+       .++...++|.++.++|||+++|.|+|+++++
T Consensus       148 ~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~  214 (411)
T 3nnk_A          148 DTSTTMLQPLAELGEICRRY------DALFYTDATASLGGNP-------LETDVWGLDAVSAGMQKCLGGPSGTSPITLS  214 (411)
T ss_dssp             ETTTTEECCCTTHHHHHHHH------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSTTTTCCCSSEEEEEEC
T ss_pred             CCCcceeccHHHHHHHHHHc------CCEEEEECCcccCCcc-------cchhccCCcEEEecCccccCCCCceEEEEEC
Confidence            99999999999999999999      9999999998765432       2333347899999999999899999999986


Q ss_pred             CCCCccccccc----ccCccCCCC-----------------------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH-
Q 017569          292 TKDDLPDELVF----HINYLGSDQ-----------------------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-  343 (369)
Q Consensus       292 ~~~~~~~~~~~----~~~y~~~~~-----------------------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-  343 (369)
                      ++ .. +.+..    .+.|.++..                       ......++.+....+++..++..+..+|++++ 
T Consensus       215 ~~-~~-~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  292 (411)
T 3nnk_A          215 AR-ME-EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGI  292 (411)
T ss_dssp             HH-HH-HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HH-HH-HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            43 11 11111    111221110                       00012256666667778888888888888887 


Q ss_pred             -HhhHHHHHHHHHHHhcCC
Q 017569          344 -CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       344 -~~~~~a~~l~~~L~~~g~  361 (369)
                       +..++++++++.|++.|+
T Consensus       293 ~~~~~~~~~l~~~L~~~g~  311 (411)
T 3nnk_A          293 ARHKLHGDALVKGIQAMGL  311 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence             899999999999998754

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.94  E-value=4.2e-25  Score=211.00  Aligned_cols=261  Identities=15%  Similarity=0.045  Sum_probs=192.5

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ++++++.+.+++.+++.....++..    .....++.+++++++++++|+++     ..+++|+||++|+.+++.++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~~~~~   83 (382)
T 4hvk_A            9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMR   83 (382)
T ss_dssp             CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-----EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEECCchHHHHHHHHHhhhh
Confidence            3355677888888877653332221    23456778889999999999975     34899999999999999987632


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh---hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      +.    .     .+++|+++.++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|++++++||||.
T Consensus        84 ~~----~-----~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  153 (382)
T 4hvk_A           84 NA----R-----KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGT  153 (382)
T ss_dssp             HG----G-----GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred             hc----C-----CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC-CCcCHHHHHHHhccCceEEEEECCCCCcee
Confidence            10    0     147999999999998877665   4999999999864 899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|.++|+++      ++ +|+|++++.+..+       .++...++|.++.++||++ +|.|+|+++++++..+.
T Consensus       154 ~~~~~~i~~l~~~~------~~-li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~  218 (382)
T 4hvk_A          154 IQPVEEISEVLAGK------AA-LHIDATASVGQIE-------VDVEKIGADMLTISSNDIY-GPKGVGALWIRKEAKLQ  218 (382)
T ss_dssp             BCCHHHHHHHHSSS------SE-EEEECTTTBTTBC-------CCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTCCCC
T ss_pred             eCCHHHHHHHHHHc------CE-EEEEhHHhcCCCC-------CCchhcCCCEEEEeHHHhc-CCCceEEEEEcCccCcC
Confidence            99999999999999      99 9999998764431       2222236899999999974 78889999998754221


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .      .+.+.........++.+.....++..++..+ .++++++  +..++++++++.|++.+.+
T Consensus       219 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~  278 (382)
T 4hvk_A          219 P------VILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEES  278 (382)
T ss_dssp             C------SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             c------ccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            1      1111111111112444555555565666643 4577776  8999999999999987433

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=2.6e-25  Score=215.59  Aligned_cols=238  Identities=14%  Similarity=0.062  Sum_probs=183.8

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WE  168 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~  168 (369)
                      +...++.+++++++++++|.+.+    ...++++||++|+..++.++..+             +++|+++.++|++  +.
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~~----~~~~~~~s~t~al~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~~  102 (416)
T 3isl_A           40 PAFTGIMNETMEMLRELFQTKNR----WAYPIDGTSRAGIEAVLASVIEP-------------EDDVLIPIYGRFGYLLT  102 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCS----EEEEEESCHHHHHHHHHHHHCCT-------------TCEEEEEESSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCC----cEEEecCcHHHHHHHHHHHhcCC-------------CCEEEEecCCcccHHHH
Confidence            45577888999999999998752    12347889999999988877331             4799999999998  77


Q ss_pred             HHHhhhcceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccc
Q 017569          169 KFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS  247 (369)
Q Consensus       169 ~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~  247 (369)
                      ..++..|++++.+|++.+ +.+|+++|+++++ +++++|++++++||||.+.|+++|.++|+++      ++++|+|+++
T Consensus       103 ~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~  175 (416)
T 3isl_A          103 EIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE------DALFIVDAVA  175 (416)
T ss_dssp             HHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT------TCEEEEECTT
T ss_pred             HHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc------CCEEEEECCc
Confidence            888899999999999875 7999999999998 5899999999999999999999999999999      9999999998


Q ss_pred             ccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc----cCcc---------CCC----
Q 017569          248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INYL---------GSD----  310 (369)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~----~~y~---------~~~----  310 (369)
                      +.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. ..+...    ..|.         ++.    
T Consensus       176 ~~~~~~-------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~  246 (416)
T 3isl_A          176 TIGGCE-------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VA-DVIAARKKVERGIATQADRAALSGNRPITS  246 (416)
T ss_dssp             TTTTSC-------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HH-HHHHTC------------------CCCCSC
T ss_pred             cccCCC-------cchhhcCCCEEEecCccccCCCCCeEEEEECHH-HH-HHhhccccccccccccccchhccCCCCCCc
Confidence            754431       233334789999999999999999999998653 11 111100    0000         000    


Q ss_pred             ------------CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          311 ------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       311 ------------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                                  .......++.+....+++.+++..+...|++++  +..++++++.+.|++.|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~  311 (416)
T 3isl_A          247 NYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGL  311 (416)
T ss_dssp             STTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        001112356666667788888888888888888  899999999999998754

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.94  E-value=3.7e-25  Score=212.22  Aligned_cols=258  Identities=11%  Similarity=-0.016  Sum_probs=192.4

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      +.+.++.+.+++.+.+..   .+  ++...++++++++++++++|.+.    ...+++|+||++|+..++.++.++    
T Consensus        28 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~----~~~v~~~~g~t~a~~~~~~~l~~~----   94 (386)
T 2dr1_A           28 PVACFPEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEK----GEVLLVPSSGTGIMEASIRNGVSK----   94 (386)
T ss_dssp             SCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSS----SEEEEESSCHHHHHHHHHHHHSCT----
T ss_pred             CcCCcHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCC----CcEEEEeCChHHHHHHHHHHhhcC----
Confidence            444557777766655432   22  33457888999999999999971    124789999999999998887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHh--hcCcEEEEeeCCCCcccCCC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFED  220 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~tG~~~~  220 (369)
                               +++|+++.++|++  +...++..|++++.+|++.+ +.+|+++|+++++  +++++|++++++||||.+.|
T Consensus        95 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~  164 (386)
T 2dr1_A           95 ---------GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP  164 (386)
T ss_dssp             ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred             ---------CCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC
Confidence                     4689999999998  88888999999999999864 8899999999994  57899999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  300 (369)
                      +++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++++|.|+|+++++++ .. ..+
T Consensus       165 l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~-~~~  229 (386)
T 2dr1_A          165 LPELAKVAKEH------DKLVFVDAVSAMGGAD-------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FL-EIA  229 (386)
T ss_dssp             HHHHHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HH-HHH
T ss_pred             HHHHHHHHHHc------CCeEEEEccccccCcc-------ccccccCCcEEEEeccccccCCCceEEEEECHH-HH-HHH
Confidence            99999999999      9999999999875542       222333689999999999998888999998642 21 111


Q ss_pred             cc--ccCccCC------CCC-CccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          301 VF--HINYLGS------DQP-TFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       301 ~~--~~~y~~~------~~~-~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..  ...|...      ... .....++.+.....++..+|+.+..+ |++++  +..++++++.+.|++.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g  301 (386)
T 2dr1_A          230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIG  301 (386)
T ss_dssp             TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            10  0000000      000 00112455555566777788887666 67777  89999999999999875

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.94  E-value=6.3e-25  Score=210.29  Aligned_cols=258  Identities=15%  Similarity=0.052  Sum_probs=188.5

Q ss_pred             CCChHHHHHHHHHHhccCCCCC----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDM----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      +++++.+.+++.+.+.....++    ..++.......++++++++++|.++     ..+++|+||++|+.+++.++...+
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~l~~~~   84 (382)
T 4eb5_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRN   84 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEcCchHHHHHHHHHHHHhhc
Confidence            4556888888888776422221    1122445777889999999999874     248999999999999999886321


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHhh---hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (369)
                      .    .+     +++|++++++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|++++++||||.+
T Consensus        85 ~----~~-----gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  154 (382)
T 4eb5_A           85 A----RK-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTI  154 (382)
T ss_dssp             G----GG-----CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred             c----CC-----CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC-CccCHHHHHHHhcCCCeEEEEeccCCCcccc
Confidence            0    01     46899999999998777654   6999999999864 8999999999999889999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      .|+++|.++|+++      +++ |+|++|+.+..+       .++...++|.++.++||+ ++|.|+|+++++++..+..
T Consensus       155 ~~l~~i~~l~~~~------~~~-i~D~a~~~g~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~  219 (382)
T 4eb5_A          155 QPVEEISEVLAGK------AAL-HIDATASVGQIE-------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP  219 (382)
T ss_dssp             CCHHHHHHHHTTS------SEE-EEECTTTBTTBC-------CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC
T ss_pred             CCHHHHHHHHHHC------CCE-EEEcchhcCCcc-------cCccccCCCEEEeehHHh-cCCCceEEEEEccccccCc
Confidence            9999999999999      999 999999854321       122212579999999998 5788899999987531211


Q ss_pred             ccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       299 ~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .      +.+.........++.+.....++..++..+. ++++++  +..++++++.+.|++.+
T Consensus       220 ~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~  276 (382)
T 4eb5_A          220 V------ILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIE  276 (382)
T ss_dssp             S------SCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             e------ecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCC
Confidence            1      1111000011124554444556666776653 467666  88999999999998863

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.93  E-value=7e-25  Score=211.01  Aligned_cols=258  Identities=11%  Similarity=-0.028  Sum_probs=190.1

Q ss_pred             ccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      .+.+.++.+.+++.+.+..   .  .++.......++++++++++|.++     ..+++|+||++|+.+++.++..+   
T Consensus        16 ~~~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~a~~~~~~~~~~~---   82 (392)
T 2z9v_A           16 GPVNAYPEVLRGLGRTVLY---D--YDPAFQLLYEKVVDKAQKAMRLSN-----KPVILHGEPVLGLEAAAASLISP---   82 (392)
T ss_dssp             SCCCCCHHHHHHTTSCCCC---T--TSHHHHHHHHHHHHHHHHHTTCSS-----CCEEESSCTHHHHHHHHHHHCCT---
T ss_pred             CCcCCCHHHHHHHhccccc---c--ccHHHHHHHHHHHHHHHHHhCCCC-----CEEEEeCCchHHHHHHHHHhcCC---
Confidence            3445567788877766643   1  234455666788889999999874     24899999999999998887331   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchH--HHHHhhhcceeEEEeccCCccccCHHHHHHHHh--hcCcEEEEeeCCCCcccCC
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~tG~~~  219 (369)
                                +++|+++.++|+++  ...++..|++++.+|++++ +.+|+++|+++++  +++++|++++++||||.+.
T Consensus        83 ----------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~  151 (392)
T 2z9v_A           83 ----------DDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTIN  151 (392)
T ss_dssp             ----------TCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEEC
T ss_pred             ----------CCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceec
Confidence                      46899999999875  3444567999999999875 7899999999995  4789999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      |+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. +.
T Consensus       152 ~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~-~~  216 (392)
T 2z9v_A          152 PIDAIGALVSAH------GAYLIVDAVSSFGGMK-------THPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AW-AK  216 (392)
T ss_dssp             CHHHHHHHHHHT------TCEEEEECTTTBTTBS-------CCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HH-HH
T ss_pred             cHHHHHHHHHHc------CCeEEEEcccccCCcc-------cccccccceEEEecCcccccCCCceeEEEECHH-HH-HH
Confidence            999999999999      9999999999854331       122222589999999999999999999998642 21 11


Q ss_pred             ccc-c--c--CccC------CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          300 LVF-H--I--NYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       300 ~~~-~--~--~y~~------~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +.. .  .  .+.+      .........++.+....+++..+++.+...|++++  +..++++++++.|++.|
T Consensus       217 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g  290 (392)
T 2z9v_A          217 MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMG  290 (392)
T ss_dssp             HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC
Confidence            110 0  0  1110      00001112355555556677788888877778776  88999999999998864

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=1e-24  Score=210.12  Aligned_cols=259  Identities=10%  Similarity=-0.034  Sum_probs=195.4

Q ss_pred             ccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      .+.+.++.+.+++.+.+..   .+  ++...++.+++++++++++|.+++    ..+++|+||++|+..++.++..+   
T Consensus        41 ~~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~----~~v~~t~g~t~al~~~~~~~~~~---  108 (393)
T 1vjo_A           41 GPSNAHPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVEP---  108 (393)
T ss_dssp             SCCCCCHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT---
T ss_pred             CCCCCCHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCchHHHHHHHHHhccCC---
Confidence            3445567777777666542   22  234668888999999999999742    14899999999999999887432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCC
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~  220 (369)
                                +++|+++.++|.+  +...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|
T Consensus       109 ----------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  177 (393)
T 1vjo_A          109 ----------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTGARQP  177 (393)
T ss_dssp             ----------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             ----------CCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHhhCCceEEEEeccCCCcceecc
Confidence                      4689999999998  88999999999999999874 88999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  300 (369)
                      +++|.++|+++      ++++|+|++|+.+..       +.++...++|.++.++||++++|.++|+++++++ .. +.+
T Consensus       178 l~~i~~l~~~~------~~~li~Dea~~~g~~-------~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~-~~~  242 (393)
T 1vjo_A          178 LEGVGELCREF------GTLLLVDTVTSLGGV-------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AI-EKL  242 (393)
T ss_dssp             CTTHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HH-HHH
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccCc-------CCcccccCccEEEEcCcccccCCCceEEEEECHH-HH-HHH
Confidence            99999999999      999999999984322       1233334789999999999999999999998653 21 111


Q ss_pred             ccc----cCccCCC------CCCcccc-CCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          301 VFH----INYLGSD------QPTFTLN-FSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       301 ~~~----~~y~~~~------~~~~~l~-~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ...    ..+..+.      ....... ++.+.....++..+++.+..++++++  +..++++++.+.|++.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  315 (393)
T 1vjo_A          243 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIG  315 (393)
T ss_dssp             HTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcC
Confidence            100    0110000      0000111 25555556677788887766677777  89999999999999875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.93  E-value=2.7e-24  Score=209.12  Aligned_cols=264  Identities=17%  Similarity=0.092  Sum_probs=194.1

Q ss_pred             cccCCChHHHHHHHHHHhc--cCCCCCCC-----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           63 FVTTWMEPECDKLVMASIN--KNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~--~n~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      ..++++++.+.+++.+.+.  ....++..     .....+..+++++++++++|.++     ..+++|+||++|+.+++.
T Consensus        29 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggt~a~~~a~~  103 (423)
T 3lvm_A           29 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-----REIVFTSGATESDNLAIK  103 (423)
T ss_dssp             TTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCC-----CeEEEeCChHHHHHHHHH
Confidence            3344567888888888776  33332221     12445677889999999999975     348999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh---cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      ++.+.+.         ..+++|+++.++|+++..++..+   |++++.+|++++ +.+|+++|++++++++++|+++.++
T Consensus       104 ~l~~~~~---------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~  173 (423)
T 3lvm_A          104 GAANFYQ---------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVN  173 (423)
T ss_dssp             HHHHHHT---------TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBC
T ss_pred             HHHHhhc---------cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCC-CccCHHHHHHhcCCCcEEEEEeCCC
Confidence            8875321         11479999999999988887555   999999999874 8999999999999999999999999


Q ss_pred             CCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       213 ~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      ||+|.+.|+++|.++|+++      ++++|+|++++.+..+       .+....++|.++.++||+ ++|.|+|++++++
T Consensus       174 nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~  239 (423)
T 3lvm_A          174 NEIGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKLP-------IDLSQLKVDLMSFSGHKI-YGPKGIGALYVRR  239 (423)
T ss_dssp             TTTCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTSCCSEEEEESTTT-TSCSSCEEEEECB
T ss_pred             CCCccccCHHHHHHHHHHc------CCEEEEEhhhhcCCCC-------cChhhcCCCEEEechHHh-cCCCCeEEEEEec
Confidence            9999999999999999999      9999999999875432       223333689999999996 5788899999875


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +...  .+  ...+.++........++.+....+++.+++..+... ++++  +..++++++++.|++++
T Consensus       240 ~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~  304 (423)
T 3lvm_A          240 KPRV--RI--EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIE  304 (423)
T ss_dssp             TTBC--CC--CCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred             cccC--CC--CccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence            4221  11  111111111111112455555556666677666443 5555  89999999999998874

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.93  E-value=8.9e-26  Score=213.56  Aligned_cols=257  Identities=12%  Similarity=0.035  Sum_probs=189.7

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |.++++.+.+++.+.+..+     .++...+...++++++++++|.+.+   ...+++|+||++|+.+++.++..     
T Consensus         8 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~t~g~t~a~~~~~~~~~~-----   74 (353)
T 2yrr_A            8 PTPIPERVQKALLRPMRGH-----LDPEVLRVNRAIQERLAALFDPGEG---ALVAALAGSGSLGMEAGLANLDR-----   74 (353)
T ss_dssp             SCCCCHHHHGGGGSCCCCT-----TCHHHHHHHHHHHHHHHHHHCCCTT---CEEEEESSCHHHHHHHHHHTCSC-----
T ss_pred             CCCCCHHHHHHHhcccccc-----cCHHHHHHHHHHHHHHHHHhCCCCC---CceEEEcCCcHHHHHHHHHHhcC-----
Confidence            3345677777777666431     2455567788899999999998621   13489999999999888776521     


Q ss_pred             HHhcCCCCCCCeEEecCCCcchH--HHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l  221 (369)
                                ++|++++++|+++  ...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus        75 ----------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~  143 (353)
T 2yrr_A           75 ----------GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG-EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPA  143 (353)
T ss_dssp             ----------CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred             ----------CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCH
Confidence                      4789999899874  5566778999999999864 78999999999998 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|.++|+++      ++++|+|++|+.+..+       .++...++|.+++++|||+++|.|+|+++++++ .. ..+.
T Consensus       144 ~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~l~  208 (353)
T 2yrr_A          144 EAIGALAKEA------GALFFLDAVTTLGMLP-------FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE-AR-KAFT  208 (353)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHH-HH-HHCC
T ss_pred             HHHHHHHHHc------CCeEEEEcCccccccc-------ccccccCceEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence            9999999999      9999999999744321       122222579999999999999999999998653 21 1111


Q ss_pred             cccCc-cC-----CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          302 FHINY-LG-----SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       302 ~~~~y-~~-----~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ....+ ..     .........++.+.....++..+++.+..+|++++  +..++++++++.|++.|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  275 (353)
T 2yrr_A          209 GKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARG  275 (353)
T ss_dssp             CCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC
Confidence            00101 00     00000111245555556667788888877778777  89999999999998864

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.93  E-value=1e-23  Score=201.83  Aligned_cols=259  Identities=15%  Similarity=0.091  Sum_probs=186.5

Q ss_pred             CCChHHHHHHHHHHhccCCCCCCC-C---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDMDE-Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~~~-~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      +++++.+.+++.++++....++.. +   ........++++++++++|+++     ..+++|+||++|+..++.+++...
T Consensus        11 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~~   85 (384)
T 1eg5_A           11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP-----SEIFFTSCATESINWILKTVAETF   85 (384)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCG-----GGEEEESCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCC-----CeEEEECCHHHHHHHHHHhhhhhc
Confidence            355688888888887653222211 1   2335666778888999999875     248999999999999999886310


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHH---hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccC
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF  218 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~  218 (369)
                               ...+++|+++.++|+++...+   +..|++++.+|++++ +.+|+++|++++++++++|+++.++||||.+
T Consensus        86 ---------~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~  155 (384)
T 1eg5_A           86 ---------EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGTI  155 (384)
T ss_dssp             ---------TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCBB
T ss_pred             ---------cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC-CccCHHHHHHHhCCCCeEEEEECCCCCcccc
Confidence                     001468999999999887666   667999999998864 8999999999999889999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCC--ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          219 EDVKLLHDLLTKKNEETGWD--TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      .|+++|.++|+++      +  +++|+|++|+.+..+       .++...++|.++.++||++ +|.|+|+++++++-.+
T Consensus       156 ~~~~~i~~l~~~~------~~~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~~~  221 (384)
T 1eg5_A          156 QPVEDVTRIVKKK------NKETLVHVDAVQTIGKIP-------FSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPI  221 (384)
T ss_dssp             CCHHHHHHHHHHH------CTTCEEEEECTTTTTTSC-------CCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCC
T ss_pred             cCHHHHHHHHHhc------CCceEEEEEhhhhcCCcc-------cCchhcCCCEEEecHHHhc-CCCceEEEEEcCCCcc
Confidence            9999999999999      9  999999998743221       2233226899999999984 6777899998754211


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ...      +.+.........++.+.....+++.+|+.+ .+++.++  +..++++++.+.|++.|
T Consensus       222 ~~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g  280 (384)
T 1eg5_A          222 RPL------IHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLG  280 (384)
T ss_dssp             CCS------BCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccc------cccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence            111      111100000112444444455556666654 3456666  88899999999998855

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.93  E-value=1.5e-24  Score=208.77  Aligned_cols=258  Identities=12%  Similarity=0.030  Sum_probs=189.2

Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      .++++.+.+++.+.+...   +  ++.......++++++++++|.+++    ..+++|+||++|+..++.++..+     
T Consensus        28 ~~~~~~v~~a~~~~~~~~---~--~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~~-----   93 (393)
T 2huf_A           28 SNAPQRVLDAMSRPILGH---L--HPETLKIMDDIKEGVRYLFQTNNI----ATFCLSASGHGGMEATLCNLLED-----   93 (393)
T ss_dssp             CCCCHHHHHHTTSCCCCT---T--SHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCCT-----
T ss_pred             CCCCHHHHHHHHhhhccC---C--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHHhCC-----
Confidence            345577777776655431   2  334556777889999999998752    24789999999999998887431     


Q ss_pred             HhcCCCCCCCeEEecCCCcchH--HHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~  222 (369)
                              +++|+++.++|+++  ...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus        94 --------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~  164 (393)
T 2huf_A           94 --------GDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLE  164 (393)
T ss_dssp             --------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             --------CCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-CCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHH
Confidence                    46899999999884  3345667999999999764 78999999999998 899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      +|.++|+++      ++++|+|++++.+..+       .++...++|.++.++|||+++|.|.|++++++ +.. ..+..
T Consensus       165 ~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~-~~~~~  229 (393)
T 2huf_A          165 GVGALCHQH------NCLLIVDTVASLGGAP-------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH-RAV-ERYKR  229 (393)
T ss_dssp             THHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSSSTTCCCSSCEEEEECH-HHH-HHHHT
T ss_pred             HHHHHHHHc------CCEEEEEcccccCCCC-------cchhhcCccEEEECCCcccccCCCeEEEEECH-HHH-HHHhh
Confidence            999999999      9999999998754321       22333368999999999998899999999863 222 12111


Q ss_pred             c----cCc----------cCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 H----INY----------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 ~----~~y----------~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .    .+|          .+.........++.+....+++..+++.+..+|+.++  +..++++++++.|++.|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  304 (393)
T 2huf_A          230 RNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGF  304 (393)
T ss_dssp             CSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            0    121          1111001111245555556666678887766677776  888999999999998753

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.93  E-value=2.8e-25  Score=212.70  Aligned_cols=258  Identities=16%  Similarity=0.006  Sum_probs=192.2

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |.++++.+.+++.+.+...     .++...++.+++++++++++|++.+   ...+++|+||++|+. ++.++..     
T Consensus        10 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~---~~~v~~~~g~t~al~-~~~~~~~-----   75 (384)
T 3zrp_A           10 PTTIKEDVLVAGLENNVGF-----TSKEFVEALAYSLKGLRYVMGASKN---YQPLIIPGGGTSAME-SVTSLLK-----   75 (384)
T ss_dssp             CSCCCHHHHHHTTCCSCCT-----TSHHHHHHHHHHHHHHHHHHTCCTT---SEEEEEESCHHHHHH-HGGGGCC-----
T ss_pred             CCCCCHHHHHHhhcccccc-----ccHHHHHHHHHHHHHHHHHhCCCCC---CcEEEEcCCcHHHHH-HHHhhcC-----
Confidence            3445677777665544321     2345577788899999999999852   134899999999998 8776533     


Q ss_pred             HHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l  221 (369)
                              .+++|++++++|++  +...++..|++++.+|++.+ +.+|+++|++++++ ++++|++++++||+|.+.|+
T Consensus        76 --------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  146 (384)
T 3zrp_A           76 --------PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPV  146 (384)
T ss_dssp             --------TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCH
T ss_pred             --------CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcH
Confidence                    14689999999966  66777888999999999874 79999999999998 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccc-
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL-  300 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~-  300 (369)
                      ++|.++|+++      ++++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. ..+ 
T Consensus       147 ~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~  211 (384)
T 3zrp_A          147 KDVINKIRKY------VELIVVDGVSSVGAEE-------VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-AL-SILD  211 (384)
T ss_dssp             HHHHHHHGGG------EEEEEEECTTTTTTSC-------CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHH-HH-HHHH
T ss_pred             HHHHHHHHhc------CCEEEEECcccccCcc-------ccccccCCCEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence            9999999999      9999999999865431       223333689999999999988999999998653 21 111 


Q ss_pred             cc--ccCccCCC-------CC----CccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          301 VF--HINYLGSD-------QP----TFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       301 ~~--~~~y~~~~-------~~----~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..  ...|....       ..    .....|+.+....+++.+++..+..+|++++  +..++++++.+.|++.|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  286 (384)
T 3zrp_A          212 SQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALG  286 (384)
T ss_dssp             HCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            00  00000000       00    0001136666667777788888887888877  89999999999999875

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.93  E-value=1.9e-24  Score=208.47  Aligned_cols=262  Identities=17%  Similarity=0.092  Sum_probs=186.8

Q ss_pred             cCCChHHHHHHHHHHhccCCCCC----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDM----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ++++++.+.+++.+++.....++    .......++.+++++++++++|+++     ..+++|+||++|+.+++.+++..
T Consensus        29 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~g~t~al~~~~~~l~~~  103 (400)
T 3vax_A           29 TTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEP-----DELIFTSGATESNNIALLGLAPY  103 (400)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCG-----GGEEEESCHHHHHHHHHHTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCC-----CcEEEeCCHHHHHHHHHHHHHHh
Confidence            34556778888887765322211    1122345677889999999999975     24899999999999999987621


Q ss_pred             HHHHHHhcCCCCCCC-eEEecCCCcchHHHHHhh---hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          141 WQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~-~Vi~s~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      ...    +     ++ +|+++.++|+++...+..   .|++++.+|++++ +.+|+++|++++++++++|+++.++||+|
T Consensus       104 ~~~----~-----gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG  173 (400)
T 3vax_A          104 GER----T-----GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPS-GRISVEGVMERLRPDTLLVSLMHVNNETG  173 (400)
T ss_dssp             HHH----H-----TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTT-CCCCHHHHHTTCCTTEEEEECCSBCTTTC
T ss_pred             hcc----C-----CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCC-CCcCHHHHHHhcCCCceEEEEECCCCCce
Confidence            110    1     46 899999999998776665   4999999999874 89999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEE-EeCCCC
Q 017569          217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV-WRTKDD  295 (369)
Q Consensus       217 ~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~-~~~~~~  295 (369)
                      .+.|+++|.++|+++      ++++++|++|+.+..       ..++... +|.++.++||+ ++|.|.|+++ ++++..
T Consensus       174 ~~~~l~~i~~la~~~------~~~li~D~a~~~~~~-------~~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~  238 (400)
T 3vax_A          174 VIQPVAELAQQLRAT------PTYLHVDAAQGYGKV-------PGDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEM  238 (400)
T ss_dssp             BBCCHHHHHHHHTTS------SCEEEEECTTTTTTS-------GGGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSS
T ss_pred             eeCcHHHHHHHHHhc------CCEEEEEhhhhcCCC-------CcChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhc
Confidence            999999999999999      999999999986443       2233323 89999999995 5788999999 887433


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHH
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                      ..........+.+.........++.+....+++..++..+. ++++++  +..++++++.+.|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~  301 (400)
T 3vax_A          239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLA  301 (400)
T ss_dssp             TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhC
Confidence            21000001111111110111124444444455556666543 466666  88999999999998

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.93  E-value=1.6e-24  Score=208.01  Aligned_cols=259  Identities=10%  Similarity=0.022  Sum_probs=191.2

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |...++.+.+++.+.+.   .+  .++...++..++++++++++|.+..    ..+++|+||++|+..++.++..+    
T Consensus        31 p~~~~~~v~~a~~~~~~---~~--~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~~al~~~~~~~~~~----   97 (393)
T 3kgw_A           31 PSNLAPRVLAAGSLRMI---GH--MQKEMLQIMEEIKQGIQYVFQTRNP----LTLVVSGSGHCAMETALFNLLEP----   97 (393)
T ss_dssp             CCCCCHHHHHHTTCCCC---CT--TSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESCCTTTHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHhccccc---Cc--ccHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCcHHHHHHHHHhcCCC----
Confidence            33445666666544221   11  2345567778899999999998741    24789999999999988887432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l  221 (369)
                               +++|+++.++|++  +...++..|++++.+|++++ +.+|+++|++++++ ++++|+++.++||||.+.|+
T Consensus        98 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  167 (393)
T 3kgw_A           98 ---------GDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG-EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL  167 (393)
T ss_dssp             ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred             ---------CCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence                     4689998888763  46778888999999999875 68999999999998 89999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|.++|+++      ++++|+|++++.+..+       .++...++|.++.++||++++|.|+|+++++++ .. +.+.
T Consensus       168 ~~i~~l~~~~------~~~li~De~~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~-~~~~  232 (393)
T 3kgw_A          168 DGFGELCHRY------QCLLLVDSVASLGGVP-------IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AK-YKVY  232 (393)
T ss_dssp             TTHHHHHHHT------TCEEEEECTTTTTTSC-------CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HH-HHHH
T ss_pred             HHHHHHHHHc------CCEEEEECCccccCcc-------cchhhcCCCEEEecCcccccCCCceeEEEECHH-HH-HHHh
Confidence            9999999999      9999999998754331       223334689999999999989999999998643 11 1111


Q ss_pred             c-ccC-------------ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          302 F-HIN-------------YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       302 ~-~~~-------------y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . ...             +.++........++.+....+++..++..+..++++++  +..++++++++.|++.|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  308 (393)
T 3kgw_A          233 SRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGL  308 (393)
T ss_dssp             TCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            0 000             11111111112245556666777788888877888877  899999999999998854

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.92  E-value=4.7e-24  Score=205.51  Aligned_cols=257  Identities=9%  Similarity=0.040  Sum_probs=187.5

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.+.+..   .+  ++.......++++.+++++|.+++    ..+++|+||++|+..++.++..+      
T Consensus        28 ~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~~------   92 (396)
T 2ch1_A           28 NCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLEE------   92 (396)
T ss_dssp             CCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC----cEEEECCcHHHHHHHHHHHhcCC------
Confidence            3456666666554422   12  333345566788889999999752    14889999999999998887432      


Q ss_pred             hcCCCCCCCeEEecCCCcchHH--HHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                             +++|+++.++|.++.  ..++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|+++
T Consensus        93 -------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~  164 (396)
T 2ch1_A           93 -------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG  164 (396)
T ss_dssp             -------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred             -------CCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC-CCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence                   468999999999884  477888999999999864 88999999999998 8999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH  303 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  303 (369)
                      |.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++++|.|+|++++++. .+ ..+...
T Consensus       165 i~~l~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~  229 (396)
T 2ch1_A          165 VGQICHQH------DCLLIVDAVASLCGVP-------FYMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRNR  229 (396)
T ss_dssp             HHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHTC
T ss_pred             HHHHHHHc------CCEEEEEccccccCCc-------cchhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-Hhhhhc
Confidence            99999999      9999999999854321       233333679999999999999999999988652 22 111110


Q ss_pred             ---c-C-c---------cCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          304 ---I-N-Y---------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       304 ---~-~-y---------~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                         . . +         ...........++.+.....++..+++.+..++++++  +..++++++.+.|++.|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  303 (396)
T 2ch1_A          230 RTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGL  303 (396)
T ss_dssp             SSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence               0 0 0         1100000112245555555667778887766778777  889999999999988753

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.92  E-value=3.5e-24  Score=205.64  Aligned_cols=261  Identities=12%  Similarity=-0.034  Sum_probs=189.1

Q ss_pred             cCCChHHHHHHHHHHhccCC-CCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HH
Q 017569           65 TTWMEPECDKLVMASINKNY-VDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KR  139 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~-~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~  139 (369)
                      +++.++.+.+++.+.+.... .++.   .++.......++++.+++++|.++     ..+++|+||++|+..++.++ ..
T Consensus        25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~   99 (390)
T 1elu_A           25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDP-----NTITITDNVTTGCDIVLWGLDWH   99 (390)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCG-----GGEEEESSHHHHHHHHHHHSCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCH-----HHEEEeCChHHHHHHHHhCCCCC
Confidence            34455678888877765421 1111   223323455678888999999875     24899999999999998886 22


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchHHHH----HhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                                   .+++|+++.++|.++...    ++..|++++.+|++. +++.+|+++|++++++++++|++++++||
T Consensus       100 -------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~np  166 (390)
T 1elu_A          100 -------------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWN  166 (390)
T ss_dssp             -------------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTT
T ss_pred             -------------CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccC
Confidence                         146899999999986643    567799999999863 34899999999999988999999999999


Q ss_pred             cccCCCHHHHHHHHH----HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          215 TGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       215 tG~~~~l~~I~~l~~----~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ||.+.|+++|.++|+    ++      ++++|+|++|+.+..+       .++...++|.++.++|||+++|.|+|++++
T Consensus       167 tG~~~~~~~i~~l~~~~~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~  233 (390)
T 1elu_A          167 TGQVLPLAEIMAVCRRHQGNY------PVRVLVDGAQSAGSLP-------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYI  233 (390)
T ss_dssp             TCCBCCHHHHHHHHHHCCSSS------CCEEEEECTTTBTTBC-------CCTTTSCCSEEEEESSSTTCCCTTCEEEEE
T ss_pred             CceecCHHHHHHHHhhhhhhc------CcEEEEEcccccCCcC-------CChhhcCCCEEEccccccccCCCceEEEEE
Confidence            999999999999999    89      9999999999864331       223334689999999999999999999998


Q ss_pred             eCCCCcccccccc-cCccC------C------C-CCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHH
Q 017569          291 RTKDDLPDELVFH-INYLG------S------D-QPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSS  353 (369)
Q Consensus       291 ~~~~~~~~~~~~~-~~y~~------~------~-~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~  353 (369)
                      +++ .. ..+... ..+..      .      . ...+ ..++.+....+++..+++.+..+| ++++  +..++++++.
T Consensus       234 ~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~  310 (390)
T 1elu_A          234 HGD-CL-GEINPTYVGWRSITYGAKGEPTGWAEGGKRF-EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLW  310 (390)
T ss_dssp             CTT-TG-GGCCCCSCCTTTEEECTTSCEEEECSGGGGG-CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             CHH-hH-hhcCCccccCCcccccccCcccccccchHhh-CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            753 32 222110 00000      0      0 0011 124555555566778888776666 7666  8899999999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|++.
T Consensus       311 ~~L~~~  316 (390)
T 1elu_A          311 RGLNQL  316 (390)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            999987

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.92  E-value=9.9e-24  Score=206.95  Aligned_cols=306  Identities=12%  Similarity=0.029  Sum_probs=198.6

Q ss_pred             ccccccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCC-CCccccccccCC-ChHHHHHHH--HHHhcc-CCCC
Q 017569           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGN-PRLNLASFVTTW-MEPECDKLV--MASINK-NYVD   86 (369)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~-p~~~l~~~~~~~-~~~~v~~~~--~~~~~~-n~~~   86 (369)
                      ++|+++|...|-.-+....++| .+.+..++++++......+.. ....++.+.+.. .++.+.+++  ...+.. ++..
T Consensus        21 ~~~~~~~~~~p~~~~~~~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~   99 (438)
T 1wyu_A           21 ASLEDLFAHLPKEILSPPIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQ   99 (438)
T ss_dssp             SSTGGGGTTSCGGGSSCCCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCS
T ss_pred             CCHHHHHHhCcHHHhcCCCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCc
Confidence            4677888776543222245788 889999999988776543322 222233333322 344454444  233322 2333


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      +..+++..++++++++++++++|++.     ..+++++|++.++..++.+++..            .+++|+++.++|++
T Consensus       100 ~~~~~g~~~~~~~~~~~la~~~g~~~-----~~i~~~~g~taa~ea~~~a~~~~------------~gd~Viv~~~~h~s  162 (438)
T 1wyu_A          100 PEVSQGVLQATFEYQTMIAELAGLEI-----ANASMYDGATALAEGVLLALRET------------GRMGVLVSQGVHPE  162 (438)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHTSSE-----ECSCBSSHHHHHHHHHHHHHHHH------------TCCEEEEETTSCHH
T ss_pred             chhhhhHHHHHHHHHHHHHHHhCCCc-----cceEEeCcHHHHHHHHHHHHhcC------------CCCEEEEcCccCHh
Confidence            33467888999999999999999975     23688999994433333332211            14799999999999


Q ss_pred             HHHHH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEE
Q 017569          167 WEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (369)
Q Consensus       167 ~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~  242 (369)
                      +...+    +..|++++.+|++  ++.+|+++    |+++|++|++++| |++|.+.|+++|+++|+++      ++|+|
T Consensus       163 ~~~~~~~~a~~~G~~v~~v~~~--~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~------g~~vi  229 (438)
T 1wyu_A          163 YRAVLRAYLEAVGAKLLTLPLE--GGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA------GALFV  229 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCB--TTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT------TCEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCc--CCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc------CCEEE
Confidence            87655    4579999999973  37888776    6778999999998 9999999999999999999      99999


Q ss_pred             eecc-cccccccccCCCccccccCCCCcEEEEcCcc-----CCCCCCCeEEEEEeCCCCcccccccc-----cCccCCCC
Q 017569          243 VDAA-SGGFIAPFLYPDLEWDFRLPLVKSINVSGHK-----YGLVYAGVGWVVWRTKDDLPDELVFH-----INYLGSDQ  311 (369)
Q Consensus       243 vD~a-~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK-----~l~~p~g~g~l~~~~~~~~~~~~~~~-----~~y~~~~~  311 (369)
                      +|.. ++.+..  ..+      ...++|++++|+||     |+++| ++|+++++++ .. +.+...     ..+.+...
T Consensus       230 vd~d~~a~g~~--~~~------~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l~~~~~g~~~~~~~~~~  298 (438)
T 1wyu_A          230 AVADPLSLGVL--KPP------GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQLPGRLVSETVDVEGRRG  298 (438)
T ss_dssp             EECCTTGGGTB--CCH------HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGCCSCCEEEEEBTTSCEE
T ss_pred             EEechhhccCc--CCC------ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhCCCceeccccccCCCcc
Confidence            6644 221111  011      12368999999998     66677 8999998753 22 222100     00000000


Q ss_pred             CCc----------cccCCc-----chhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          312 PTF----------TLNFSK-----GSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       312 ~~~----------~l~~tr-----~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ..+          ...++.     ....++..+..+..+|.+|++++  ++.+++++++++|++.
T Consensus       299 ~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  363 (438)
T 1wyu_A          299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV  363 (438)
T ss_dssp             EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            000          001222     22223333444888999999888  8999999999999987

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.92  E-value=1.9e-24  Score=209.15  Aligned_cols=269  Identities=11%  Similarity=-0.008  Sum_probs=184.9

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCC-CCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDM-DEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~-~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      |....+.++++.+.+++.+.++....++ ..++   .......++++++++++|+++     ..+++|+|+++++..++.
T Consensus        30 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~~~~  104 (406)
T 3cai_A           30 FDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADP-----GGVVLGADRAVLLSLLAE  104 (406)
T ss_dssp             CBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHH
T ss_pred             EeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCChHHHHHHHHH
Confidence            3333344566788888888776532221 1122   245667788899999999874     248999999999988877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh----hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY----FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~----~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++...+          ..+++|+++.++|.++...+..    .|++++.+|++++++.+|+++|++++++++++|+++++
T Consensus       105 ~l~~~~----------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  174 (406)
T 3cai_A          105 ASSSRA----------GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSA  174 (406)
T ss_dssp             HTGGGG----------BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESB
T ss_pred             HHhhcc----------CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCC
Confidence            652110          0146899999999886555443    69999999998445899999999999989999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE-EEEE
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG-WVVW  290 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g-~l~~  290 (369)
                      +||||.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++ +|. +| ++++
T Consensus       175 ~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~-g~~-~G~~~~~  239 (406)
T 3cai_A          175 SGTLGGVTDLRAMTKLVHDV------GALVVVDHSAAAPYRL-------LDIRETDADVVTVNAHAWG-GPP-IGAMVFR  239 (406)
T ss_dssp             CTTTCBBCCCHHHHHHHHHT------TCEEEEECTTTTTTCC-------CCHHHHCCSEEEEEGGGGT-SCS-CEEEEES
T ss_pred             cCCccccCCHHHHHHHHHHc------CCEEEEEcccccCCCC-------CCchhcCCCEEEeehhhhc-CCC-cCeEEEE
Confidence            99999999999999999999      9999999999854331       1222225899999999986 465 77 8877


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh--------------hHHHH--HhhHHHHHHHH
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--------------VIPSF--CCVDHKKLSSF  354 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~--------------G~~~~--~~~~~a~~l~~  354 (369)
                      +++ .. ..+.....+.+.........++.+....+++.++++.+...              +++++  +..++++++.+
T Consensus       240 ~~~-~~-~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (406)
T 3cai_A          240 DPS-VM-NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMV  317 (406)
T ss_dssp             CHH-HH-HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehH-HH-hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            542 21 11111110111100000112555555445555666655432              35555  78899999999


Q ss_pred             HHHhcC
Q 017569          355 FVIHSS  360 (369)
Q Consensus       355 ~L~~~g  360 (369)
                      .|++.+
T Consensus       318 ~L~~~~  323 (406)
T 3cai_A          318 SLRSLP  323 (406)
T ss_dssp             HHHTCT
T ss_pred             HHhcCC
Confidence            999863

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=7.3e-24  Score=205.44  Aligned_cols=272  Identities=17%  Similarity=0.083  Sum_probs=193.7

Q ss_pred             CccccccccCCChHHHHHHHHHHhccCCCCCC----CCc-chHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCCchHHH
Q 017569           57 RLNLASFVTTWMEPECDKLVMASINKNYVDMD----EYP-VTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        57 ~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~----~~~-~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      .++|....+++.++.+.+++.++++....++.    .++ .......++++.+++++|. ++     ..+++|+||++|+
T Consensus        29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~  103 (420)
T 1t3i_A           29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-----REIVYTRNATEAI  103 (420)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHH
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEcCChHHHH
Confidence            34566655656668888888887765321111    111 1235556788889999998 43     3489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEE
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICV  206 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v  206 (369)
                      .+++.+++...         -..+++|+++.++|.+    +...++..|++++.+|+++ ++.+|+++|++++++++++|
T Consensus       104 ~~~~~~~~~~~---------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~v  173 (420)
T 1t3i_A          104 NLVAYSWGMNN---------LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QESFDLEHFKTLLSEKTKLV  173 (420)
T ss_dssp             HHHHHHTHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TSSBCHHHHHHHCCTTEEEE
T ss_pred             HHHHHHhhhcc---------cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CCCcCHHHHHHhhCCCceEE
Confidence            99999874210         0014689999999998    6677788899999999985 48899999999999999999


Q ss_pred             EEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       207 ~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      ++++++||+|.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||. ++|.|+|
T Consensus       174 ~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~-~~~~g~G  239 (420)
T 1t3i_A          174 TVVHISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHYP-------LDVQLIDCDWLVASGHKM-CAPTGIG  239 (420)
T ss_dssp             EEESBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEEGGGT-TSCTTCE
T ss_pred             EEeCCcccccCcCCHHHHHHHHHHc------CCEEEEEhhhccCCcc-------CchhhcCCCEEEEehhhh-cCCCceE
Confidence            9999999999999999999999999      9999999999865431       122222589999999995 5788899


Q ss_pred             EEEEeCCCCcccccccc-cCccC-----C-----CCCCccc-cCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHH
Q 017569          287 WVVWRTKDDLPDELVFH-INYLG-----S-----DQPTFTL-NFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLS  352 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~-~~y~~-----~-----~~~~~~l-~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l  352 (369)
                      +++++++ .. ..+... ..+..     .     ....... .++.+....++++.+++.+...|+.++  +..++++++
T Consensus       240 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  317 (420)
T 1t3i_A          240 FLYGKEE-IL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYL  317 (420)
T ss_dssp             EEEECHH-HH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEEEchH-HH-hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9988642 21 111110 00000     0     0000001 245555556666667888876677777  889999999


Q ss_pred             HHHHHhc
Q 017569          353 SFFVIHS  359 (369)
Q Consensus       353 ~~~L~~~  359 (369)
                      .+.|++.
T Consensus       318 ~~~L~~~  324 (420)
T 1t3i_A          318 WQGLGQI  324 (420)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            9999987

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.91  E-value=1.6e-23  Score=202.01  Aligned_cols=270  Identities=15%  Similarity=0.060  Sum_probs=191.8

Q ss_pred             ccccccccCCChHHHHHHHHHHhccCCCCCCCC--c---chHHHHHHHHHHHHHHhCC-CCCCCCCCCeEEeCCchHHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINKNYVDMDEY--P---VTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~--~---~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      .+|....+++.++.+.+++.+.+.....++..+  .   .......++++++++++|. ++     ..+++|+||++|+.
T Consensus        25 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~   99 (406)
T 1kmj_A           25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA-----EELVFVRGTTEGIN   99 (406)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHH
T ss_pred             EEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEeCChhHHHH
Confidence            344444455566788888888876543222211  1   2345566788889999998 33     35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH----HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEE
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW----EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~----~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      +++.+++...         -..+++|+++.++|++.    ...++..|++++.+|++++ +.+|+++|++++++++++|+
T Consensus       100 ~~~~~~~~~~---------~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~  169 (406)
T 1kmj_A          100 LVANSWGNSN---------VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLA  169 (406)
T ss_dssp             HHHHHTHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEE
T ss_pred             HHHHHhhhhc---------CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CCcCHHHHHHHhccCCeEEE
Confidence            9999874210         01146899999998753    4456778999999999864 88999999999998999999


Q ss_pred             EeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       208 ~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      +++++||||.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...+.|.++.++||++ +|.|+|+
T Consensus       170 ~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~g~~~-------~~~~~~~~d~~~~s~~K~~-g~~G~G~  235 (406)
T 1kmj_A          170 ITHVSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHHP-------VDVQALDCDFYVFSGHKLY-GPTGIGI  235 (406)
T ss_dssp             EESBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEEGGGTT-SCTTCEE
T ss_pred             EeCCCccccCcCCHHHHHHHHHHc------CCEEEEEchhhcCCCC-------CcccccCCCEEEEEchhcc-CCCCcEE
Confidence            999999999999999999999999      9999999999865432       1222226899999999987 7888999


Q ss_pred             EEEeCCCCcccccccccCccCCC--------------CCCcc-ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHH
Q 017569          288 VVWRTKDDLPDELVFHINYLGSD--------------QPTFT-LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKK  350 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~--------------~~~~~-l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~  350 (369)
                      ++++++ .. ..+.. . ..++.              ..... ..++.+....+++..+++.+..++++++  +..++++
T Consensus       236 ~~~~~~-~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  311 (406)
T 1kmj_A          236 LYVKEA-LL-QEMPP-W-EGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMH  311 (406)
T ss_dssp             EEECHH-HH-HHCCC-S-SCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEeHH-HH-hhcCC-c-ccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            998632 21 11111 0 00000              00000 1245555555566677777766677777  7889999


Q ss_pred             HHHHHHHhcC
Q 017569          351 LSSFFVIHSS  360 (369)
Q Consensus       351 ~l~~~L~~~g  360 (369)
                      ++.+.|++.+
T Consensus       312 ~l~~~L~~~~  321 (406)
T 1kmj_A          312 YALSQLESVP  321 (406)
T ss_dssp             HHHHHHTTST
T ss_pred             HHHHHHhcCC
Confidence            9999998863

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=1.8e-23  Score=199.60  Aligned_cols=253  Identities=14%  Similarity=0.049  Sum_probs=179.3

Q ss_pred             CChHHHHHHHHHHhccCC----C-CCCCCcchHHHHHHHHHH-HHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY----V-DMDEYPVTTELQNRCVNM-IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~----~-~~~~~~~~~~le~~~~~~-la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ++++.+.+++.+.+....    . .+...........+++++ +++++|.+       .+++|+||++|+..++.++..+
T Consensus        20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~   92 (371)
T 2e7j_A           20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-------VARVTNGAREAKFAVMHSLAKK   92 (371)
T ss_dssp             CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-------EEEEESSHHHHHHHHHHHHCCT
T ss_pred             CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-------EEEEeCChHHHHHHHHHHHhCC
Confidence            456778888887765431    0 011111223344567778 88999886       3899999999999999887432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEe--ccCCccccCHHHHHHHHh-----hcCcEEEEeeCCC
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEGYYVMNPVKAVELVD-----ENTICVAAILGST  213 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~--~~~~~~~~d~~~L~~~i~-----~~~~~v~~~~~~~  213 (369)
                                   +++|+++.++|+++..+++..|++++.+|  ++++ +.+|+++|+++++     +++++|++++++|
T Consensus        93 -------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~n  158 (371)
T 2e7j_A           93 -------------DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD-YAITPENFAQTIEETKKRGEVVLALITYPDG  158 (371)
T ss_dssp             -------------TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT-CCCCHHHHHHHHHHHTTTSCEEEEEEESSCT
T ss_pred             -------------CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC-CCcCHHHHHHHHHhhcccCCeEEEEEECCCC
Confidence                         46999999999999999999999999999  7764 8999999999998     6789999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      |+|.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++++|.++|+++++++
T Consensus       159 ptG~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~  225 (371)
T 2e7j_A          159 NYGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMP-------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE  225 (371)
T ss_dssp             TTCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBC-------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred             CCcccCCHHHHHHHHHHc------CCeEEEECccccCCCC-------CChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence            999999999999999999      9999999999976542       112212578999999999988889999998764


Q ss_pred             CCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-Hh--hHHHHHHHHHHHhcC
Q 017569          294 DDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CC--VDHKKLSSFFVIHSS  360 (369)
Q Consensus       294 ~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~--~~~a~~l~~~L~~~g  360 (369)
                       .....+.... .+...  ..+ ..++.+.....++..+++.+..   ... +.  .++++++++.|++.|
T Consensus       226 -~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~~  289 (371)
T 2e7j_A          226 -WAEIVLRRSEKYKNKE--VEL-LGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEKLG  289 (371)
T ss_dssp             -TTTTTTCBCSSCTTSB--GGG-TTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             -hhhhhccccccCcccc--ccc-ccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcC
Confidence             2211021111 11110  000 0234444445555566666543   223 77  899999999999874

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=8.6e-24  Score=200.15  Aligned_cols=254  Identities=11%  Similarity=0.060  Sum_probs=183.8

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |.++++.+.+++.+.+..     ..++.......++++++++++|.++     ..+++|+||++|+..++.++..+    
T Consensus         9 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~~----   74 (352)
T 1iug_A            9 PVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFAP----   74 (352)
T ss_dssp             SCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCC-----ceEEEcCchHHHHHHHHHhccCC----
Confidence            445567888888777642     1244555667788899999999874     24899999999999998887431    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHH--HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                               +++|+++.++|+++.  ..++..|++++.+|++++ +.+|+++|++   +++++|++++++||||.+.|++
T Consensus        75 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~  141 (352)
T 1iug_A           75 ---------GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPEDVAK---EGYAGLLLVHSETSTGALADLP  141 (352)
T ss_dssp             ---------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTTSCC---SSCSEEEEESEETTTTEECCHH
T ss_pred             ---------CCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHhc---cCCcEEEEEEecCCcceecCHH
Confidence                     468999999999965  444567999999999764 7899998877   6789999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      +|.++|++++.    ++++|+|++|+.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. ..+..
T Consensus       142 ~i~~l~~~~~~----~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~~~~  208 (352)
T 1iug_A          142 ALARAFKEKNP----EGLVGADMVTSLLVGE-------VALEAMGVDAAASGSQKGLMCPPGLGFVALSPR-AL-ERLKP  208 (352)
T ss_dssp             HHHHHHHHHCT----TCEEEEECTTTBTTBC-------CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHH-HH-HTCCC
T ss_pred             HHHHHHHhhCC----CCEEEEECCccccCcc-------eeccccCeeEEEecCcccccCCCceeEEEECHH-HH-HHhhC
Confidence            99999999833    7999999999754332       122222689999999999999999999998653 11 11100


Q ss_pred             c-----c-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          303 H-----I-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       303 ~-----~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .     . .+..... .....++.+.....++..++..+... ++++  +..++++++.+.|++.|
T Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g  272 (352)
T 1iug_A          209 RGYYLDLARELKAQK-EGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGG  272 (352)
T ss_dssp             CSSTTCHHHHHHHHT-TTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCceeeHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
Confidence            0     0 0000000 00112455554455666777776555 6666  88899999999999864

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.91  E-value=6.5e-23  Score=200.16  Aligned_cols=276  Identities=16%  Similarity=0.091  Sum_probs=188.7

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCC-CC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMD-EY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~-~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      |....++++++.+.+++.+.+.....++. .+   ....++..++++++++++|+++     ..+++|+||++|+.+++.
T Consensus        22 Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~   96 (432)
T 3a9z_A           22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP-----QDIIFTSGGTESNNLVIH   96 (432)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHH
T ss_pred             eeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEeCChHHHHHHHHH
Confidence            33333445567888888887754322221 12   2455677889999999999864     248999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC--------CCCeEEecCCCcchHHHHH----hhhcceeEEEeccCCccccCHHHHHHHHhhcC
Q 017569          136 AFKRKWQQKRKEQGKPY--------DKPNIVTGANVQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENT  203 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~--------~~~~Vi~s~~~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~  203 (369)
                      ++.+.+......+|..+        ..+.|+++..+|.++...+    +..|++++.+|++++++.+|+++|++++++++
T Consensus        97 ~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~  176 (432)
T 3a9z_A           97 STVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTT  176 (432)
T ss_dssp             HHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTE
T ss_pred             HHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCc
Confidence            88642211000122110        1147888888888875554    34689999999976347899999999999899


Q ss_pred             cEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC----------ceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD----------TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~----------~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                      ++|++++++||||.+.|+++|.++|+++      +          +++|+|++|+.+..       ..++...++|+++.
T Consensus       177 ~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~~~~~~~~~~livDea~~~~~~-------~~~~~~~~~d~~~~  243 (432)
T 3a9z_A          177 CLVTIMLANNETGVIMPISEISRRIKAL------NQIRAASGLPRVLVHTDAAQALGKR-------RVDVEDLGVDFLTI  243 (432)
T ss_dssp             EEEECCSBCTTTCBBCCHHHHHHHHHHH------HHHHHHHTCCCCEEEEECTTTTTTS-------CCCHHHHCCSEEEE
T ss_pred             eEEEEECcccCcccccCHHHHHHHHHhc------CcccccccCCceEEEEEchhhhCCc-------ccChhhcCCCEEEE
Confidence            9999999999999999999999999999      7          99999999976432       12222226899999


Q ss_pred             cCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHH
Q 017569          274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKL  351 (369)
Q Consensus       274 ~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~  351 (369)
                      ++|||+ +|. +|++++++.... ..+  ...+.++........++.+.....++.++++.+. ++++++  +..+++++
T Consensus       244 s~~K~~-g~~-~G~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~~~~  317 (432)
T 3a9z_A          244 VGHKFY-GPR-IGALYVRGVGKL-TPL--YPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDY  317 (432)
T ss_dssp             EGGGTT-CCS-CEEEEETTBTTT-BCC--CCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             ehhHhc-CCc-ceEEEEcccccc-CCc--CceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            999987 565 999998754211 111  1122221110111124555544555556666553 467766  88999999


Q ss_pred             HHHHHHhc
Q 017569          352 SSFFVIHS  359 (369)
Q Consensus       352 l~~~L~~~  359 (369)
                      +.+.|++.
T Consensus       318 l~~~L~~~  325 (432)
T 3a9z_A          318 LEERLEAE  325 (432)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999884

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.91  E-value=1.5e-23  Score=200.54  Aligned_cols=259  Identities=10%  Similarity=0.034  Sum_probs=185.3

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |.+.++.+.+++.+.+..   +  .++...++.+++++++++++|++.+.   ....+|+||++|+.+++.++..+    
T Consensus        27 p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~~~ggt~al~~~~~~~~~~----   94 (376)
T 3f0h_A           27 PVMSSEEVRAIGAEQVPY---F--RTTEFSSTMLENEKFMLEYAKAPEGS---KAVFMTCSSTGSMEAVVMNCFTK----   94 (376)
T ss_dssp             SCCCCHHHHHHHTSCCCC---C--SSHHHHHHHHHHHHHHHHHHTCCTTC---EEEEESSCHHHHHHHHHHHHCCT----
T ss_pred             CCCCcHHHHHHhcCCCCC---C--CCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCChhHHHHHHHHhccCC----
Confidence            334467777776554421   1  24556678889999999999997521   22445889999999998887532    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHH--HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                               +++|+++.+.+++..  ..+...|++++.++++.+ +.+|+++|++++++++++|++++++||+|.+.|++
T Consensus        95 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  164 (376)
T 3f0h_A           95 ---------KDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG-KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTM  164 (376)
T ss_dssp             ---------TCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT-CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHH
T ss_pred             ---------CCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHhhccCceEEEEecccCCcceecCHH
Confidence                     467888877665533  456677999999999864 89999999999988999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      +|+++|+++      ++++|+|++++.+..+       .++...++|.++.++||++++|.|.|+++++++ .. ..+..
T Consensus       165 ~i~~l~~~~------~~~li~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~  229 (376)
T 3f0h_A          165 MIGEFCKKN------NMFFVCDCVSAFLADP-------FNMNECGADVMITGSQKVLACPPGISVIVLAPR-GV-ERVEK  229 (376)
T ss_dssp             HHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HH-HHHHT
T ss_pred             HHHHHHHHc------CCEEEEEcCccccCcc-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-HHhhc
Confidence            999999999      9999999999875442       222223689999999999988999999887543 21 11111


Q ss_pred             --ccCc-cCCC-----CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          303 --HINY-LGSD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       303 --~~~y-~~~~-----~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                        ...+ ....     .......++.+....+++.+++..+..+ |++++  +..++++++++.|++.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  298 (376)
T 3f0h_A          230 SKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP  298 (376)
T ss_dssp             CCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence              0111 0000     0000011233333346677888888777 67777  88899999999999876

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.91  E-value=7.4e-23  Score=196.64  Aligned_cols=265  Identities=12%  Similarity=-0.007  Sum_probs=189.8

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+.+.+. ++++.+.+++.++++.....|...  ..++++++++++++.+|.+.+   ....++|+||++|+..++.
T Consensus        29 ~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~---~~~i~~~~g~~~a~~~~~~  103 (391)
T 3dzz_A           29 ELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPK---EDWCVFASGVVPAISAMVR  103 (391)
T ss_dssp             CEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCC---GGGEEEESCHHHHHHHHHH
T ss_pred             ceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCC---HHHEEECCCHHHHHHHHHH
Confidence            3445444443 345788999998887654444332  688999999999999995532   1358999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHh-hcCcEEEEeeCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAILGS  212 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~~~~v~~~~~~  212 (369)
                      ++..+             +++|+++.++|.++...++..|++++.+|++  .+++.+|+++|+++++ +++++|+++.++
T Consensus       104 ~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~  170 (391)
T 3dzz_A          104 QFTSP-------------GDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPH  170 (391)
T ss_dssp             HHSCT-------------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSB
T ss_pred             HhCCC-------------CCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCC
Confidence            87432             4789999999999999999999999999985  3456799999999998 689999999999


Q ss_pred             CCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C--CCCc--EEEEcCccCCC-CCC
Q 017569          213 TLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--PLVK--SINVSGHKYGL-VYA  283 (369)
Q Consensus       213 ~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--~~~D--si~~~~hK~l~-~p~  283 (369)
                      ||||.+   +++++|+++|+++      ++++|+|++|+.+...   ......+. .  ...|  .++.++||+++ .+.
T Consensus       171 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~  241 (391)
T 3dzz_A          171 NPIGYAWSEEEVKRIAELCAKH------QVLLISDEIHGDLVLT---DEDITPAFTVDWDAKNWVVSLISPSKTFNLAAL  241 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS---SCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTT
T ss_pred             CCCCcccCHHHHHHHHHHHHHC------CCEEEEecccccccCC---CCCceehhhcCccccCcEEEEEeChhhccccch
Confidence            999999   7899999999999      9999999999875531   11111121 1  1256  88889999985 567


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      +.|++++++++.. ..+.........        ++.+.....++..++.. +.+.++++  +..++++++.+.|++
T Consensus       242 r~G~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~  308 (391)
T 3dzz_A          242 HAACAIIPNPDLR-ARAEESFFLAGI--------GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAK  308 (391)
T ss_dssp             CCEEEECCSHHHH-HHHHHHHHHHTC--------SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheEEEECCHHHH-HHHHHHHHhhcc--------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899988644332 222111000000        11222223444445544 44456666  788899999999988

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.91  E-value=2.7e-23  Score=205.23  Aligned_cols=237  Identities=9%  Similarity=-0.029  Sum_probs=178.4

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----H
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----W  167 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~  167 (369)
                      ....+.+++++++++++|+++     ..+++|+|+++++.+++.++.++          ...+++|+++.++|++    +
T Consensus       108 ~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~al~~~~~~~~~~----------~~~~~~Vl~~~~~~~s~~~~~  172 (465)
T 3e9k_A          108 PWITGDESIVGLMKDIVGANE-----KEIALMNALTVNLHLLMLSFFKP----------TPKRYKILLEAKAFPSDHYAI  172 (465)
T ss_dssp             CGGGTTHHHHGGGHHHHTCCG-----GGEEECSCHHHHHHHHHHHHCCC----------CSSSCEEEEETTCCHHHHHHH
T ss_pred             cHHHhHHHHHHHHHHHcCCCc-----CCEEEECCHHHHHHHHHHHhccc----------cCCCCEEEEcCCcCCchHHHH
Confidence            344556678889999999985     35899999999999988887432          1224579999999987    4


Q ss_pred             HHHHhhhccee-----EEEeccCCccccCHHHHHHHHh---hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCc
Q 017569          168 EKFARYFEVEL-----KEVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT  239 (369)
Q Consensus       168 ~~~~~~~G~~v-----~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~  239 (369)
                      ...++..|+++     ..+|.+. ++.+|+++|+++|+   +++++|++++++|+||.+.|+++|.++|+++      |+
T Consensus       173 ~~~~~~~G~~~~~~~v~~~~~~~-~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~------g~  245 (465)
T 3e9k_A          173 ESQLQLHGLNIEESMRMIKPREG-EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK------GC  245 (465)
T ss_dssp             HHHHHHTTCCHHHHEEEECCCTT-CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT------TC
T ss_pred             HHHHHHcCCcceeeeEEEecCCC-CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc------CC
Confidence            44667788875     2334444 48999999999997   5789999999999999999999999999999      99


Q ss_pred             eEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccc-cccCccCCC-------
Q 017569          240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV-FHINYLGSD-------  310 (369)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~-~~~~y~~~~-------  310 (369)
                      ++|+|+|++.+..+       .++...++|++++++|||++ +|.|+|+++++++ .. ..+. ....|.++.       
T Consensus       246 ~vi~D~a~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~  316 (465)
T 3e9k_A          246 YVGFDLAHAVGNVE-------LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HA-HTIKPALVGWFGHELSTRFKM  316 (465)
T ss_dssp             EEEEECTTTTTTSC-------CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG-GT-TTSCCSSCCGGGBCHHHHTTC
T ss_pred             EEEEEhhhhcCCcC-------CchhhcCCCEEEECcccccccCCCceEEEEEcHH-HH-hhcCCcccCccCCCCCccccc
Confidence            99999999876542       23333378999999999995 7778899998653 21 1111 111222221       


Q ss_pred             --CCC------ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          311 --QPT------FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       311 --~~~------~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                        ...      ....||.+....+++++++..+...|++++  +..++++++.+.|++.
T Consensus       317 ~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          317 DNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             CSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence              000      011357777788999999999988888888  8999999999999873

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.90  E-value=4.5e-23  Score=204.89  Aligned_cols=287  Identities=12%  Similarity=0.002  Sum_probs=191.9

Q ss_pred             HHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCC--C-----CCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 017569           41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--V-----DMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (369)
Q Consensus        41 ~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~--~-----~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (369)
                      +++..+.+..... ...++|.... ++.++.+.+++.+++.+..  +     .|.......++|+.+++++++++|++++
T Consensus        31 ~~~~~~~~~~~~~-~~~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~  108 (483)
T 1rv3_A           31 EVYDIIKKESNRQ-RVGLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ  108 (483)
T ss_dssp             HHHHHHHHHHHHH-HSSEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHh-hcCeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence            3455444433221 2234443332 3456888888888775432  1     1223345688999999999999999852


Q ss_pred             CCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH--------HHhhhcceeEEEec--
Q 017569          114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK--------FARYFEVELKEVKL--  183 (369)
Q Consensus       114 ~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~--------~~~~~G~~v~~v~~--  183 (369)
                      + ....+.+++| +++|..++.++.++             +++|++++++|.++..        .+...|..++.+++  
T Consensus       109 ~-~~~~V~~~sG-s~an~~~~~all~p-------------GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~  173 (483)
T 1rv3_A          109 C-WGVNVQPYSG-SPANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV  173 (483)
T ss_dssp             T-EEEECCCSSH-HHHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred             c-CceEEEECCc-HHHHHHHHHHhcCC-------------CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence            1 0012455555 48888878776442             4799999988877643        34455644555655  


Q ss_pred             cCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc
Q 017569          184 EEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (369)
Q Consensus       184 ~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (369)
                      +++++.+|+++|+++++ ++|++|++ +++|++ .+.|+++|+++|+++      ++++++|+||+.+..+.  +.....
T Consensus       174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~------g~~livD~ah~~g~~~~--~~~~~p  243 (483)
T 1rv3_A          174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN------GAYLMADMAHISGLVVA--GVVPSP  243 (483)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHHH--TSSCCG
T ss_pred             ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc------CCEEEEEccchhccccc--CCCCCC
Confidence            64568999999999998 78999998 888887 888999999999999      99999999987554421  111111


Q ss_pred             ccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc----cCc-----cCCCCCCccccCCcchhHHHHHHHHHH
Q 017569          263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INY-----LGSDQPTFTLNFSKGSSQIIAQYYQFI  333 (369)
Q Consensus       263 ~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~----~~y-----~~~~~~~~~l~~tr~~~~~l~~~~~l~  333 (369)
                        +.++|.++.++||++.+|.| |+++++++.. .  +...    ..|     +... ......|+......+++.++++
T Consensus       244 --~~~~div~~s~~K~l~Gprg-G~i~~~~~~~-~--~~~~~g~~~~y~~~~~~~~~-~~~~~~g~~~~~~iaal~~Al~  316 (483)
T 1rv3_A          244 --FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVR-S--VDPKTGKEILYNLESLINSA-VFPGLQGGPHNHAIAGVAVALK  316 (483)
T ss_dssp             --GGTCSEEEEESSGGGCCCSC-EEEEEECSBC-C---------CCBCCHHHHHHHH-HTTTTCCSCCHHHHHHHHHHHH
T ss_pred             --CCCCcEEEecCcccCCCCCc-eEEEEcchhh-h--hccccCcchhhHHHHHhhhh-cCCcccCCccHHHHHHHHHHHH
Confidence              23689999999999988888 9999986421 0  0000    000     0000 0011235666666677778888


Q ss_pred             HhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          334 RLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       334 ~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+..++++++  +..++++++++.|.+.|+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  346 (483)
T 1rv3_A          317 QAMTPEFKEYQRQVVANCRALSAALVELGY  346 (483)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhChhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8877788777  899999999999998764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.90  E-value=8.6e-23  Score=193.96  Aligned_cols=259  Identities=10%  Similarity=-0.014  Sum_probs=180.4

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchH-HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTT-ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      |...++.+.+++.+.+.    ++  ++... ....++++++++++|.+.+   ...+++|+||++|+..++.+++.+   
T Consensus        12 p~~~~~~v~~a~~~~~~----~~--~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~~~g~t~a~~~~~~~~~~~---   79 (366)
T 1m32_A           12 PLTTSRTVKEAMLFDSC----TW--DDDYNIGVVEQIRQQLTALATASEG---YTSVLLQGSGSYAVEAVLGSALGP---   79 (366)
T ss_dssp             SCCCCHHHHHTTCCCCC----TT--SHHHHTTTHHHHHHHHHHHHCSSSS---EEEEEEESCHHHHHHHHHHHSCCT---
T ss_pred             CcCCCHHHHHHHhhhhc----CC--CHHHHHHHHHHHHHHHHHHhCCCCc---CcEEEEecChHHHHHHHHHHhcCC---
Confidence            44456777776655331    11  12111 3445666778899983211   124899999999999998887431   


Q ss_pred             HHHhcCCCCCCCeEEe-cCCCcch-HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh--cCcEEEEeeCCCCcccCC
Q 017569          144 KRKEQGKPYDKPNIVT-GANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFE  219 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~-s~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--~~~~v~~~~~~~~tG~~~  219 (369)
                                +++|++ +.++|.+ +..++...|++++.+|++++ +.+|+++|++++++  ++++|+++.++||||.+.
T Consensus        80 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~  148 (366)
T 1m32_A           80 ----------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADPTISHIAMVHSETTTGMLN  148 (366)
T ss_dssp             ----------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC
T ss_pred             ----------CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCeEEEEEecccCCcceec
Confidence                      345554 4577875 66778888999999999764 78999999999987  478999999999999999


Q ss_pred             CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       220 ~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      |+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++|||+++|.|+|+++++++ .. ..
T Consensus       149 ~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~-~~  213 (366)
T 1m32_A          149 PIDEVGALAHRY------GKTYIVDAMSSFGGIP-------MDIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KL-AA  213 (366)
T ss_dssp             CHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HH-TT
T ss_pred             CHHHHHHHHHHc------CCEEEEECCccccCcC-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-Hh
Confidence            999999999999      9999999999864432       223223689999999999988999999998753 11 11


Q ss_pred             cccc-cCccCCC--------CCCccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          300 LVFH-INYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       300 ~~~~-~~y~~~~--------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +... ..|....        .......++.+....+++..+++.+...| +.++  +..++++++.+.|++.|+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~  287 (366)
T 1m32_A          214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGF  287 (366)
T ss_dssp             CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCC
Confidence            1110 0111000        00000113454555566777888777666 7766  889999999999998753

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.90  E-value=9.9e-23  Score=195.98  Aligned_cols=268  Identities=10%  Similarity=-0.023  Sum_probs=190.4

Q ss_pred             CCCCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ++..++|..+.+. +.++.+.+++.+.++.....|...++..++++++.+++.+.+|.+.+.   ..+++|+||++|+..
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~  105 (388)
T 1j32_A           29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIFN  105 (388)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHHH
Confidence            3444455555443 245778888888876544455555678999999999999999975421   358999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++..+             +++|+++.++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|++++|
T Consensus       106 ~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  172 (388)
T 1j32_A          106 LMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP  172 (388)
T ss_dssp             HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHhcCC-------------CCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCC
Confidence            98887432             46899999999999999999999999999875 24789999999999988999999999


Q ss_pred             CCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--ccccc--CCCCcEEEEcCccCCC-CCC
Q 017569          212 STLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFR--LPLVKSINVSGHKYGL-VYA  283 (369)
Q Consensus       212 ~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~--~~~~Dsi~~~~hK~l~-~p~  283 (369)
                      +||||.+   +++++|+++|+++      ++++|+|++|+.+...  ....  ...+.  ..+.|.+..++||+++ .+.
T Consensus       173 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~  244 (388)
T 1j32_A          173 SNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW  244 (388)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhcccC--CCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence            9999998   4599999999999      9999999999875431  1110  01111  1347889999999984 224


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .+|+++.+++ .. ..+......  .   .+    +.   ..+.+++++..+  +.+.++++  +..++.+++.+.|++.
T Consensus       245 r~G~~~~~~~-~~-~~l~~~~~~--~---~~----~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (388)
T 1j32_A          245 RVGFLAGPVP-LV-KAATKIQGH--S---TS----NV---CTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             CCEEEECCHH-HH-HHHHHHHHT--T---TC----SC---CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEeCHH-HH-HHHHHHHhh--c---cc----CC---CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4899987532 21 221110000  0   00    11   123344443433  34456665  7888999999999887

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.90  E-value=1.9e-23  Score=200.17  Aligned_cols=265  Identities=12%  Similarity=-0.014  Sum_probs=180.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..++.+.+++.+.+..   .  .++.......+++++++++++....- +...+++|+||++|+.+++.++...+     
T Consensus        15 ~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~~~-----   83 (385)
T 2bkw_A           15 ILSGAVQKALDVPSLG---H--TSPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK-----   83 (385)
T ss_dssp             CCCHHHHHTTSCCCCC---T--TSHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT-----
T ss_pred             CchHHHHHHHhccccc---c--CCHHHHHHHHHHHHHHHHHhCCCCCC-CCceEEEcCchHHHHHHHHHHHhccC-----
Confidence            3456666666544432   1  13444445556777788888764210 01358999999999999988874100     


Q ss_pred             hcCCCCCCCeEEecCC-Cc-chHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHH
Q 017569          147 EQGKPYDKPNIVTGAN-VQ-VCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h-~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~  222 (369)
                           ..+++|++++. .+ .++...++..|++++.+|+ +. ++.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus        84 -----~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~  157 (385)
T 2bkw_A           84 -----APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLK  157 (385)
T ss_dssp             -----CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred             -----CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCC-CCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHH
Confidence                 01467777644 33 3334677888999999999 65 488999999999988 899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-  301 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-  301 (369)
                      +|.++|++++.    ++++|+|++|+.+..+       .++...++|.++.++|||+++|.|.|+++++++ .+...+. 
T Consensus       158 ~i~~~~~~~~~----~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~  225 (385)
T 2bkw_A          158 AISQAIKQTSP----ETFFVVDAVCSIGCEE-------FEFDEWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYALND  225 (385)
T ss_dssp             HHHHHHHHHCT----TSEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCH
T ss_pred             HHHHHHHhhCC----CCEEEEECccccCCcc-------ccccccCceEEEecCccccccCCcceEEEEcHH-HHHHHHhh
Confidence            99999999822    6999999999854331       223333689999999999999999999998653 2110110 


Q ss_pred             ----cccCccCC-----------CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHH-HhcC
Q 017569          302 ----FHINYLGS-----------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFV-IHSS  360 (369)
Q Consensus       302 ----~~~~y~~~-----------~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L-~~~g  360 (369)
                          ....|...           ........++.+....+++..+++.+...|+.++  +..++++++.+.| ++.|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  302 (385)
T 2bkw_A          226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ  302 (385)
T ss_dssp             HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                00011000           0000001135555556677778887766678776  8889999999999 7765

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.90  E-value=6.6e-23  Score=194.63  Aligned_cols=256  Identities=13%  Similarity=0.036  Sum_probs=186.1

Q ss_pred             CChHHHHHHHHHHhccCCC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ..++.+.+++.+++..... ....++...++.+++++++++++|.+..    ..+++|+||++|+.+++.++..      
T Consensus        14 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~v~~~~g~t~al~~~~~~l~~------   83 (362)
T 3ffr_A           14 ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN----YEVLFLASATEIWERIIQNCVE------   83 (362)
T ss_dssp             CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----EEEEEESCHHHHHHHHHHHHCS------
T ss_pred             CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCchHHHHHHHHhccC------
Confidence            3456677777666654431 2224566778888999999999998631    3588999999999999888743      


Q ss_pred             HhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                               +.+++..+.|++  +...++..|++++.++++.+ +.+|+++|+  ++++|++|++++++||||.+.|+++
T Consensus        84 ---------~~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~  151 (362)
T 3ffr_A           84 ---------KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG-KGFYPADIT--VPADAEIICLTHNETSSGVSMPVED  151 (362)
T ss_dssp             ---------SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHH
T ss_pred             ---------CcEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC-CCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHH
Confidence                     255555555555  34466778999999999764 899999998  7788999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc-
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-  302 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-  302 (369)
                      |+++|++++     ++++|+|++|+.+..+       .++  ..+|.++.++|||+++|.|.|+++++++ .. ..+.. 
T Consensus       152 i~~la~~~p-----~~~li~D~a~~~~~~~-------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~-~~~~~~  215 (362)
T 3ffr_A          152 INTFRDKNK-----DALIFVDAVSSLPYPK-------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDR-VI-EKSKAL  215 (362)
T ss_dssp             HTTSGGGST-----TSEEEEECTTTTTSSC-------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHH-HH-HHHHHH
T ss_pred             HHHHHHhCC-----CCEEEEecccccCCcc-------cCh--hHCcEEEEecccccCCCCceEEEEECHH-HH-HHhhhc
Confidence            999999874     7999999998865431       122  2389999999999988999999887653 21 11110 


Q ss_pred             c-----cCccCCC------CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          303 H-----INYLGSD------QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       303 ~-----~~y~~~~------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .     ..+....      .......++.+.....++..+++.+..+|+.++  +..++++++++.|++.+
T Consensus       216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  286 (362)
T 3ffr_A          216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSK  286 (362)
T ss_dssp             HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0     0000000      000111356666667778888888877788777  89999999999999883

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.90  E-value=2.4e-22  Score=193.82  Aligned_cols=269  Identities=14%  Similarity=-0.017  Sum_probs=192.4

Q ss_pred             CCCCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ++..++|....+. +.++.+.+++.+.+......|...++..++++++.+++.+.+|.+.+   ...+++|+||++|+..
T Consensus        40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~---~~~v~~~~g~t~al~~  116 (389)
T 1o4s_A           40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS---PDQVVVTNGAKQALFN  116 (389)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC---GGGEEEESHHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHEEEecCHHHHHHH
Confidence            3444455555443 33577888888888654444544567899999999999988887531   1358999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      ++.++..+             +++|++++++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|+++++
T Consensus       117 ~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  183 (389)
T 1o4s_A          117 AFMALLDP-------------GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSP  183 (389)
T ss_dssp             HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESS
T ss_pred             HHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCC
Confidence            98887431             46899999999999999999999999999875 34789999999999888999999999


Q ss_pred             CCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeE
Q 017569          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVG  286 (369)
Q Consensus       212 ~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g  286 (369)
                      +||||.+.|   +++|+++|+++      ++++++|++|+.+...- .+.....+. ..+.|.++.++||+++ .+.++|
T Consensus       184 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  256 (389)
T 1o4s_A          184 NNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG  256 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCCcccceE
Confidence            999999866   99999999999      99999999999755410 000011121 2468999999999985 334589


Q ss_pred             EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++++++ +.. ..+.......     .    .+-   ..+.+++++..+.. +++++  +..++.+++.+.|++.|
T Consensus       257 ~l~~~~-~~~-~~l~~~~~~~-----~----~~~---~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~g  317 (389)
T 1o4s_A          257 YLISSE-KVA-TAVSKIQSHT-----T----SCI---NTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKMG  317 (389)
T ss_dssp             EEECCH-HHH-HHHHHHHHHH-----T----CSC---CHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeCH-HHH-HHHHHHhhhc-----c----cCC---CHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998743 221 2211100000     0    011   23445555566643 35555  78889999999998865

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.90  E-value=4.7e-22  Score=194.24  Aligned_cols=230  Identities=12%  Similarity=-0.036  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHhhhhcCCCCccccccccC-CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 017569           39 KEAAYQVINDELMLDGNPRLNLASFVTT-WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (369)
                      ...++..........++..++|+...+. ++++.+.+++.+++..+. ..|....+..++++++.+++.+.+|.+.+   
T Consensus        28 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~---  104 (437)
T 3g0t_A           28 IRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP---  104 (437)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC---
T ss_pred             HHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC---
Confidence            3444444443333344555566655554 345788888888886544 44555556789999999999998887642   


Q ss_pred             CCCeEEeCCchHHHHHHHHHHH--HHHHHHHHhcCCCCCCC--eEEecCCCcchHHHHHhhhcceeEEEeccCCccccCH
Q 017569          117 TAVGVGTVGSSEAIMLAGLAFK--RKWQQKRKEQGKPYDKP--NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP  192 (369)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~--~~~~~~~~~~g~~~~~~--~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~  192 (369)
                      ...+++|+||++|+.+++.++.  .+             ++  +|+++.++|.++...++..|++++.+|++++++.+|+
T Consensus       105 ~~~i~~t~g~t~al~~~~~~l~~~~~-------------gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~  171 (437)
T 3g0t_A          105 ARACVPTVGSMQGCFVSFLVANRTHK-------------NREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR  171 (437)
T ss_dssp             GGGEEEESHHHHHHHHHHHHHTTSCT-------------TCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHH
T ss_pred             cccEEEeCCHHHHHHHHHHHHhcCCC-------------CCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCH
Confidence            2468999999999999988875  32             45  8999999999999999999999999999765578999


Q ss_pred             HHHHHHH-hhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-------c
Q 017569          193 VKAVELV-DENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-------W  261 (369)
Q Consensus       193 ~~L~~~i-~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-------~  261 (369)
                      ++|++++ ++++++|+++.|+||||.+.+   +++|+++|+++      ++++|+|++|+.+...  .....       .
T Consensus       172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~  243 (437)
T 3g0t_A          172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH------DVIVIEDLAYFGMDFR--KDYSHPGEPLYQP  243 (437)
T ss_dssp             HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCCTT--SCCCSTTSSCCCC
T ss_pred             HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchhhcccC--CCcCcccccchhh
Confidence            9999999 778999999999999999976   77789999999      9999999999875442  11000       1


Q ss_pred             ccc-CCCCcEEEEcCccCCC-CCCCeEEEEEeC
Q 017569          262 DFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       262 ~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                      .+. ....+.++.+.+|+++ .+.+.|+++.++
T Consensus       244 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  276 (437)
T 3g0t_A          244 SVANYTDNYILALSSSKAFSYAGQRIGVLMISG  276 (437)
T ss_dssp             CGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH
T ss_pred             ccCCCCCcEEEEEcCccCCCCccceeEEEEECH
Confidence            222 2456788889999986 556789998853

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.89  E-value=5.6e-22  Score=190.75  Aligned_cols=269  Identities=12%  Similarity=-0.009  Sum_probs=188.0

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCC-eEEeCCchHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV-GVGTVGSSEAIMLAGL  135 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~Ggt~a~~~al~  135 (369)
                      ++|....+. ++++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+   ... +++|+||++|+..++.
T Consensus        29 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~---~~~~v~~~~g~~~a~~~~~~  105 (389)
T 1gd9_A           29 ISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD---PKTEIMVLLGANQAFLMGLS  105 (389)
T ss_dssp             EECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC---TTTSEEEESSTTHHHHHHHT
T ss_pred             EecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC---CCCeEEEcCChHHHHHHHHH
Confidence            345544444 34577888888887654444544557899999999999998896532   135 8999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ++..+             +++|+++.++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|++++++||
T Consensus       106 ~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np  172 (389)
T 1gd9_A          106 AFLKD-------------GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNP  172 (389)
T ss_dssp             TTCCT-------------TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             HhCCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCC
Confidence            76331             46899999999999999999999999999875 34789999999999888899999999999


Q ss_pred             cccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       215 tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      ||.+.   ++++|+++|+++      ++++|+|++|+.+...--.+..-..+. ..+.|.++.++||+++ .+.++|+++
T Consensus       173 tG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  246 (389)
T 1gd9_A          173 TGAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA  246 (389)
T ss_dssp             TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEE
T ss_pred             CCcCCCHHHHHHHHHHHHHc------CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEE
Confidence            99985   599999999999      999999999997654100000011111 2357889999999985 334579998


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh--hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~--G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++ +.. ..+.....+.     .    ++.+.....++..+|+. +.+  .++++  +..++.+++.+.|++.|
T Consensus       247 ~~~-~~~-~~l~~~~~~~-----~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  309 (389)
T 1gd9_A          247 APS-WII-ERMVKFQMYN-----A----TCPVTFIQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEMG  309 (389)
T ss_dssp             CCH-HHH-HHHHHHHTTT-----T----CSCCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ECH-HHH-HHHHHHHhhh-----c----cCCCHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            753 222 2221111100     0    12222222222233332 233  55665  78899999999998875

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=5.3e-22  Score=192.48  Aligned_cols=259  Identities=16%  Similarity=-0.001  Sum_probs=179.1

Q ss_pred             CCChHHHHHHHHHHhccCCCCCCCC----cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           66 TWMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        66 ~~~~~~v~~~~~~~~~~n~~~~~~~----~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      ++.++.+.+++.+++......+...    .+......++++++++++|+++     ..+++|+||++++..++.+++...
T Consensus        38 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~al~~~~~~~  112 (416)
T 1qz9_A           38 GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARD-----GEVVVTDTTSINLFKVLSAALRVQ  112 (416)
T ss_dssp             CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCT-----TSEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCc-----ccEEEeCChhHHHHHHHHhhcccc
Confidence            3455677888888776433222110    1223555678888999999874     248889999999988888765210


Q ss_pred             HHHHHhcCCCCCCC-eEEecCCCcchHHHHHh----hh--cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          142 QQKRKEQGKPYDKP-NIVTGANVQVCWEKFAR----YF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       142 ~~~~~~~g~~~~~~-~Vi~s~~~h~s~~~~~~----~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                       .. ..+     ++ .|+++..+|.++..++.    ..  |++++.+|+        +++|++++++++++|++++++||
T Consensus       113 -~~-~~~-----gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~np  177 (416)
T 1qz9_A          113 -AT-RSP-----ERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVNYK  177 (416)
T ss_dssp             -HH-HST-----TCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBCTT
T ss_pred             -cc-cCC-----CCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEeccccC
Confidence             00 001     23 46777789987655433    34  888888876        67788999888999999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe-EEEEEeCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV-GWVVWRTK  293 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~-g~l~~~~~  293 (369)
                      ||.+.|+++|.++|+++      ++++|+|++|+.+..+       .++...++|.++.++||++++++++ |+++++++
T Consensus       178 tG~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~  244 (416)
T 1qz9_A          178 TGYMHDMQALTALSHEC------GALAIWDLAHSAGAVP-------VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ  244 (416)
T ss_dssp             TCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT
T ss_pred             cccccCHHHHHHHHHHc------CCEEEEEccccccCcC-------CChhhcCCCEEEecCcccCCCCCCCeEEEEECHH
Confidence            99999999999999999      9999999999854331       1222125899999999999888888 99998754


Q ss_pred             CCccccccc-ccCccCCCC-------------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHH
Q 017569          294 DDLPDELVF-HINYLGSDQ-------------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       294 ~~~~~~~~~-~~~y~~~~~-------------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                       .. ..+.. ...|.+...             ......++.+....+++.++++.+..++++++  +..++++++.+.|+
T Consensus       245 -~~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  322 (416)
T 1qz9_A          245 -LC-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVE  322 (416)
T ss_dssp             -TT-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HH-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence             22 11111 111111100             00011245556556777788888877788777  89999999999998


Q ss_pred             hc
Q 017569          358 HS  359 (369)
Q Consensus       358 ~~  359 (369)
                      +.
T Consensus       323 ~~  324 (416)
T 1qz9_A          323 QR  324 (416)
T ss_dssp             HH
T ss_pred             hh
Confidence            86

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.89  E-value=9.4e-22  Score=189.11  Aligned_cols=269  Identities=13%  Similarity=-0.019  Sum_probs=189.6

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCCchHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~  135 (369)
                      ++|....+. ++++.+.+++.++++.....|....+..++++++.+++.+.+|.+.+.   . .+++|+||++|+..++.
T Consensus        33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~~v~~~~g~~~a~~~~~~  109 (386)
T 1u08_A           33 INLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDA---DSDITVTAGATEALYAAIT  109 (386)
T ss_dssp             EECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCT---TTTEEEESSHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CCCEEEcCChHHHHHHHHH
Confidence            344444443 345778888888876533444444578999999999999998975321   3 58999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++..+             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++++|||
T Consensus       110 ~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt  176 (386)
T 1u08_A          110 ALVRN-------------GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS  176 (386)
T ss_dssp             HHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HhCCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCC
Confidence            87431             46899999999999999999999999999976458899999999998889999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-ccc-CCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |.+.|   +++|+++|+++      ++++|+|++|+.+...- .+...+ .+. ..+.|.++.++||+++ .+.++|+++
T Consensus       177 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  249 (386)
T 1u08_A          177 ATVWQQADFAALWQAIAGH------EIFVISDEVYEHINFSQ-QGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV  249 (386)
T ss_dssp             CCCCCHHHHHHHHHHHTTS------CCEEEEECTTTTCBCCS-SCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             CccCCHHHHHHHHHHHHHc------CcEEEEEccccccccCC-CCCcChhcccCccCcEEEEecchhhcCCcccceEEEE
Confidence            99864   78999999999      99999999998754310 000011 111 2367889999999986 334589998


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +++ +.. +.+.....+.     .    ++.+.....++..+|+.. .+.++++  +..++.+++.+.|++.|+
T Consensus       250 ~~~-~~~-~~l~~~~~~~-----~----~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~  311 (386)
T 1u08_A          250 APA-PIS-AEIRKVHQYL-----T----FSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRL  311 (386)
T ss_dssp             CCH-HHH-HHHHHHHHHH-----T----SSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSC
T ss_pred             cCH-HHH-HHHHHHHHhh-----c----cCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            753 221 2221111000     0    122222223333444433 4456665  788899999999988653

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.89  E-value=6.4e-23  Score=196.80  Aligned_cols=261  Identities=11%  Similarity=-0.061  Sum_probs=188.3

Q ss_pred             ccccCCChHHHHHHHHHHhcc---CCCC----CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHH
Q 017569           62 SFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA  133 (369)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~a  133 (369)
                      .+.+.+.|+.|.+++.+.+.+   |...    ...++...++.+++++.+++++|++.+    ..+++ |+|||+++.++
T Consensus        18 ~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a   93 (377)
T 3e77_A           18 LYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN----YKVIFLQGGGCGQFSAV   93 (377)
T ss_dssp             EECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEcCchHHHHHHH
Confidence            344556678899998887743   2111    112345677788999999999999742    34777 57999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      +..+..+           ..+++|++...+|++  +.+.++..|+.++.++++.+ +..++++++.+++++|++|.+++.
T Consensus        94 ~~~l~~~-----------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i~~~t~lV~~~h~  161 (377)
T 3e77_A           94 PLNLIGL-----------KAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNLNPDASYVYYCAN  161 (377)
T ss_dssp             HHHHGGG-----------STTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCCCTTCSCEEEESE
T ss_pred             HHhccCC-----------CCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhccCCCccEEEEeCc
Confidence            8877531           013577777666665  33455667888877787653 566777788788889999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      +|.+|.+.|+     +|+++      ++++|||++++.+..       +++++  ..|.+++++|||+ +|.|.|++++|
T Consensus       162 et~tG~~~pi-----i~~~~------~~~~~vD~~q~~g~~-------~id~~--~~~~~~~s~~K~~-gp~G~g~l~~~  220 (377)
T 3e77_A          162 ETVHGVEFDF-----IPDVK------GAVLVCDMSSNFLSK-------PVDVS--KFGVIFAGAQKNV-GSAGVTVVIVR  220 (377)
T ss_dssp             ETTTTEECSS-----CCCCT------TCCEEEECTTTTTSS-------CCCGG--GCSEEEEEGGGTT-SCTTCEEEEEE
T ss_pred             cCchheEchh-----hhccC------CCEEEEEcccccCCC-------CCchh--hcCEEEEeccccc-CCCccEEEEEc
Confidence            9999999998     47778      999999999987665       34444  2345889999999 79999999998


Q ss_pred             CCCCcccccccccCccC--CCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          292 TKDDLPDELVFHINYLG--SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~--~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++-.. ..-...+.|+.  .........+|.+...++++..+++.+..+ |++.+  +..+++++++++|++++
T Consensus       221 ~~~l~-~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~  293 (377)
T 3e77_A          221 DDLLG-FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ  293 (377)
T ss_dssp             TTSCS-CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHh-hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            75321 11001122221  000112234788888889999999999888 89988  99999999999999984

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.89  E-value=5.6e-22  Score=192.50  Aligned_cols=269  Identities=12%  Similarity=0.021  Sum_probs=189.6

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCCchHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~al~  135 (369)
                      ++|....+. ++++.+.+++.++++.....|....+..++++++.+++.+.+|.+.+.   . .+++|+||++|+.+++.
T Consensus        28 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~~v~~t~g~~~al~~~~~  104 (411)
T 2o0r_A           28 VNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDP---ETEVLVTVGATEAIAAAVL  104 (411)
T ss_dssp             EESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT---TTSEEEEEHHHHHHHHHHH
T ss_pred             eeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCC---CceEEEeCCHHHHHHHHHH
Confidence            445444443 345778888888886543445445568899999999999999975321   2 58999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC--ccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      ++..+             +++|+++.++|.++...++..|++++.+|++++  ++.+|+++|++++++++++|+++.++|
T Consensus       105 ~~~~~-------------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~n  171 (411)
T 2o0r_A          105 GLVEP-------------GSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHN  171 (411)
T ss_dssp             HHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCT
T ss_pred             HhcCC-------------CCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCC
Confidence            87432             468999999999999999999999999998653  478999999999988899999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      |+|.+.|   +++|+++|+++      ++++++|++|+.+...--.+..-..+. ..+.|.++.+++|+++ .+..+|++
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  245 (411)
T 2o0r_A          172 PTGAVLSATELAAIAEIAVAA------NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA  245 (411)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence            9999855   68999999999      999999999987653100000001111 2367899999999985 23448999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++ ++.. ..+.....+..         ++.+.....++..+|+. +.+.++++  +..++.+++.+.|++.|
T Consensus       246 ~~~-~~~~-~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g  307 (411)
T 2o0r_A          246 CGP-AELI-AGVRAAKQYLS---------YVGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEIG  307 (411)
T ss_dssp             ECC-HHHH-HHHHHHHHHHT---------SCCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeC-HHHH-HHHHHHHhhcc---------CCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            874 2222 22211111110         11112223333444543 35566666  78889999999998765

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.89  E-value=3.3e-21  Score=185.65  Aligned_cols=281  Identities=12%  Similarity=0.032  Sum_probs=190.7

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (369)
                      .++.+...+. ..+++..++|+.+.+.. .++.+.+++.++++.....|....+..++++++.+++.+.+|.+.+   ..
T Consensus        17 ~~~~~~~~~~-~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~---~~   92 (391)
T 3h14_A           17 MDVMEAARRA-EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD---PG   92 (391)
T ss_dssp             HHHHHHHHHH-HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC---GG
T ss_pred             HHHHHHHHHH-HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC---HH
Confidence            3444433332 23445556666665543 3577899998888765555555557889999999999999996542   24


Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHH
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVE  197 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~  197 (369)
                      .+++|+||++|+..++.++..+             +++|+++.++|..+...++..|++++.+|++++ ++.+|+++|++
T Consensus        93 ~v~~t~g~~~al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (391)
T 3h14_A           93 RVVITPGSSGGFLLAFTALFDS-------------GDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG  159 (391)
T ss_dssp             GEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred             HEEEecChHHHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh
Confidence            5899999999999998887442             468999999999999999999999999999753 36889999988


Q ss_pred             HHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          198 LVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       198 ~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                      +   ++++|+++.|+||||.+.|   +++|+++|+++      ++++|+|++|+.+...   ............+.++.+
T Consensus       160 ~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s  227 (391)
T 3h14_A          160 L---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ------GASFISDEIYHGIEYE---AKAVTALELTDECYVINS  227 (391)
T ss_dssp             S---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS---SCCCCGGGTCSSSEEEEE
T ss_pred             c---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEECcchhcccC---CCCcChhhcCCCEEEEEe
Confidence            7   7899999999999999976   88999999999      9999999999875531   111111112344566668


Q ss_pred             CccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHH
Q 017569          275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKL  351 (369)
Q Consensus       275 ~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~  351 (369)
                      .+|+++ .+.+.|+++.+++ .. ..+.......     .    ++.+.....++.+++.  +.+.+.++  +..++.++
T Consensus       228 ~sK~~g~~G~r~G~~~~~~~-~~-~~~~~~~~~~-----~----~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~  294 (391)
T 3h14_A          228 FSKYFSMTGWRVGWMVVPED-QV-RVVERIAQNM-----F----ICAPHASQVAALAALD--CDAELQANLDVYKANRKL  294 (391)
T ss_dssp             SSSTTCCTTSCCEEEECCGG-GH-HHHHHHHHHT-----T----CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred             chhccCCccceeEEEEeCHH-HH-HHHHHHHhhh-----c----cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH
Confidence            999985 6677898887432 22 2221100000     0    1222222222223333  55566666  78889999


Q ss_pred             HHHHHHhcCCC
Q 017569          352 SSFFVIHSSYF  362 (369)
Q Consensus       352 l~~~L~~~g~~  362 (369)
                      +.+.|++.|+.
T Consensus       295 l~~~l~~~~~~  305 (391)
T 3h14_A          295 MLERLPKAGFT  305 (391)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999987754

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.89  E-value=1.2e-21  Score=189.74  Aligned_cols=271  Identities=10%  Similarity=0.017  Sum_probs=188.7

Q ss_pred             CCCCcccccccc---C-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           54 GNPRLNLASFVT---T-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        54 ~~p~~~l~~~~~---~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      ++..++|..+.+   . +.++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|
T Consensus        37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a  113 (406)
T 1xi9_A           37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTEA  113 (406)
T ss_dssp             TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHH
T ss_pred             CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH---HHEEEcCChHHH
Confidence            444445555555   2 335778888888776544345445577899999999999988876422   358999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      +.+++.++..+             +++|+++.++|.++..+++..|++++.+|+++ +++.+|+++|++++++++++|++
T Consensus       114 l~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i  180 (406)
T 1xi9_A          114 LQLIFGALLDP-------------GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAV  180 (406)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEE
T ss_pred             HHHHHHHhCCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEE
Confidence            99998887431             46899999999999999999999999999875 35789999999999988999999


Q ss_pred             eeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cccccCCCC-cEEEEcCccCCC-CC
Q 017569          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLV-KSINVSGHKYGL-VY  282 (369)
Q Consensus       209 ~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~-Dsi~~~~hK~l~-~p  282 (369)
                      ++++||||.+.+   +++|.++|+++      ++++|+|++|+.+..  -.+.. ...+. ... |.++.++||+++ .+
T Consensus       181 ~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~--~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G  251 (406)
T 1xi9_A          181 INPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTY--EGEHISPGSLT-KDVPVIVMNGLSKVYFATG  251 (406)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBS--SSCCCCHHHHC-SSSCEEEEEESTTTTCCGG
T ss_pred             ECCCCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEcCcccccc--CCCCCCHHHcC-CCceEEEEeccccccCCCc
Confidence            999999999855   99999999999      999999999987543  11100 01111 345 677889999985 33


Q ss_pred             CCeEEEEE-eCCC---CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHH
Q 017569          283 AGVGWVVW-RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFV  356 (369)
Q Consensus       283 ~g~g~l~~-~~~~---~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L  356 (369)
                      .++|++++ .++.   .+...+.....+.          ++.+.....++..+|+. +.++++++  +..++.+++.+.|
T Consensus       252 ~r~G~~~~~~~~~~~~~l~~~l~~~~~~~----------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L  320 (406)
T 1xi9_A          252 WRLGYMYFVDPENKLSEVREAIDRLARIR----------LCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRL  320 (406)
T ss_dssp             GCCEEEEEECTTCTTHHHHHHHHHHHHHT----------CCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEecCchhHHHHHHHHHHHHHhh----------cCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            45899883 2321   1212221111110          11222222333334432 34456666  7888999999999


Q ss_pred             HhcC
Q 017569          357 IHSS  360 (369)
Q Consensus       357 ~~~g  360 (369)
                      ++.+
T Consensus       321 ~~~~  324 (406)
T 1xi9_A          321 NEIP  324 (406)
T ss_dssp             HTST
T ss_pred             HhCC
Confidence            8863

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.6e-22  Score=197.31  Aligned_cols=274  Identities=11%  Similarity=0.021  Sum_probs=194.6

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++..++|+.+.+.. +++.+.+++.++++. ....|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+.
T Consensus        56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~v~~t~G~~~al~  132 (447)
T 3b46_A           56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA---ENVTVTTGANEGIL  132 (447)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG---GGEEEESHHHHHHH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHHH
Confidence            34456777666543 357788999888865 23445455578899999999998888876421   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-----------ccccCHHHHHHHHh
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-----------YYVMNPVKAVELVD  200 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-----------~~~~d~~~L~~~i~  200 (369)
                      .++.++.++             +++|+++.++|..+...++..|+.++.+|++++           ++.+|+++|+++++
T Consensus       133 ~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (447)
T 3b46_A          133 SCLMGLLNA-------------GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT  199 (447)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred             HHHHHHcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence            999887542             478999999999999999999999999998753           47899999999998


Q ss_pred             hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cc--cCCCCcEEEEc
Q 017569          201 ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF--RLPLVKSINVS  274 (369)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~--~~~~~Dsi~~~  274 (369)
                      +++++|++++|+||||.+   +++++|+++|+++      ++++++|++|+.+...  .+...+ .+  ...+.+.+..+
T Consensus       200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~i~S  271 (447)
T 3b46_A          200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKH------NVVIISDEVYEHLYFT--DSFTRIATLSPEIGQLTLTVGS  271 (447)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCGGGSCHHHHTTEEEEEE
T ss_pred             cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CcEEEEeccchhcccC--CCCcCHHHcCCCCCCcEEEEec
Confidence            889999999999999998   5699999999999      9999999999975531  110111 11  12357888899


Q ss_pred             CccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHH
Q 017569          275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKK  350 (369)
Q Consensus       275 ~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~  350 (369)
                      ++|+++ .++.+|+++.++++.. +.+.....+.     .    ++.+.....++..+|.....+ .++++  +..++.+
T Consensus       272 ~sK~~~~~G~riG~~~~~~~~l~-~~l~~~~~~~-----~----~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~  341 (447)
T 3b46_A          272 AGKSFAATGWRIGWVLSLNAELL-SYAAKAHTRI-----C----FASPSPLQEACANSINDALKIGYFEKMRQEYINKFK  341 (447)
T ss_dssp             HHHHTTCTTSCCEEEECSCHHHH-HHHHHHHHHH-----T----SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CchhcCCcchhhEEEEeCCHHHH-HHHHHHHhhc-----c----CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence            999986 4567899987333332 2211100000     0    122222223333444443223 35555  7888899


Q ss_pred             HHHHHHHhcCC
Q 017569          351 LSSFFVIHSSY  361 (369)
Q Consensus       351 ~l~~~L~~~g~  361 (369)
                      ++.+.|++.|+
T Consensus       342 ~l~~~L~~~g~  352 (447)
T 3b46_A          342 IFTSIFDELGL  352 (447)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHCCC
Confidence            99999988763

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.89  E-value=5.8e-22  Score=191.23  Aligned_cols=213  Identities=13%  Similarity=0.038  Sum_probs=166.9

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccC----CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      .++|+...+. ++++.+.+++.+.++..    ...|....+..++++++.+++++.+|.+.+   ...+++|+||++|+.
T Consensus        37 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~---~~~i~~~~g~~~al~  113 (398)
T 3ele_A           37 VYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFN---ADNLYMTMGAAASLS  113 (398)
T ss_dssp             CEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGGEEEESSHHHHHH
T ss_pred             eEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCC---hHHEEEccCHHHHHH
Confidence            3455555554 34577888888877653    344445567899999999999999996542   245899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~-~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++.++..+             + ++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|+++.
T Consensus       114 ~~~~~l~~~-------------g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~  180 (398)
T 3ele_A          114 ICFRALTSD-------------AYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINS  180 (398)
T ss_dssp             HHHHHHCCS-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECS
T ss_pred             HHHHHHcCC-------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcC
Confidence            998887442             4 78999999999999999999999999999865689999999999998999999999


Q ss_pred             CCCCcccCCC---HHHHHHHHHH------hhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-
Q 017569          211 GSTLTGEFED---VKLLHDLLTK------KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-  280 (369)
Q Consensus       211 ~~~~tG~~~~---l~~I~~l~~~------~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-  280 (369)
                      |+||||.+.+   +++|+++|++      +      ++++|+|++|+.+...  ....+........+.+..+.+|+++ 
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~  252 (398)
T 3ele_A          181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGR------PIFIIADEPYREIVYD--GIKVPFVTKYYDNTLVCYSYSKSLSL  252 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHHHHHTS------CCEEEEECTTTTCBCT--TCCCCCGGGTCSSEEEEEESTTTSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhhhccCC------CeEEEEeccccccccC--CCCcCChHhhcCCeEEEEehhhcCCC
Confidence            9999999977   7777789998      7      9999999999875531  1111122223345677888999986 


Q ss_pred             CCCCeEEEEEeCC
Q 017569          281 VYAGVGWVVWRTK  293 (369)
Q Consensus       281 ~p~g~g~l~~~~~  293 (369)
                      .+.+.|++++++.
T Consensus       253 ~G~r~G~~~~~~~  265 (398)
T 3ele_A          253 PGERIGYVLVPDE  265 (398)
T ss_dssp             TTTCCEEEECCTT
T ss_pred             ccceeEEEEEcch
Confidence            6678899987653

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.89  E-value=2.6e-21  Score=186.26  Aligned_cols=266  Identities=12%  Similarity=0.048  Sum_probs=186.4

Q ss_pred             CCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           55 NPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        55 ~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      ...++|+.+.+.. +++.+.+++.+.+......|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+.++
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~g~~~al~~~  107 (385)
T 1b5p_A           31 VDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQALFNL  107 (385)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HHEEEcCChHHHHHHH
Confidence            3445666655543 34678888887775544445444578999999999999888875421   3589999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      +.++.++             +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++++++|++++|+
T Consensus       108 ~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~  174 (385)
T 1b5p_A          108 FQAILDP-------------GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN  174 (385)
T ss_dssp             HHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSC
T ss_pred             HHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCC
Confidence            8887432             46899999999999999999999999999975 457899999999998889999999999


Q ss_pred             CCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C-CCCcEEEEcCccCCC-CCCCeE
Q 017569          213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLVKSINVSGHKYGL-VYAGVG  286 (369)
Q Consensus       213 ~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~Dsi~~~~hK~l~-~p~g~g  286 (369)
                      ||||.+.+   +++|+++|+++      ++++++|++|+.+...   .. ...+. . ...+.+..+++|+++ .+.+.|
T Consensus       175 NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~-~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG  244 (385)
T 1b5p_A          175 NPTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLYE---GE-HFSPGRVAPEHTLTVNGAAKAFAMTGWRIG  244 (385)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS---SC-CCCGGGTCTTTEEEEEESTTTTTCGGGCCE
T ss_pred             CCCCCCcCHHHHHHHHHHHHHc------CCEEEEEccchhcccC---CC-CCCHHHcCCCCEEEEEechhhcCCcccceE
Confidence            99999854   99999999999      9999999999875431   11 11111 1 134666778999985 345589


Q ss_pred             EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh-----cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l-----g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +++.++ +.. ..+.....+.     .    .+-   ..+.++++...+     +.+.++++  +..++.+++.+.|++.
T Consensus       245 ~~~~~~-~~~-~~l~~~~~~~-----~----~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          245 YACGPK-EVI-KAMASVSRQS-----T----TSP---DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             EEECCH-HHH-HHHHHHHHTT-----T----CSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCH-HHH-HHHHHHHhhc-----c----CCC---CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            998743 221 1211100000     0    011   133344443444     23345544  7777888899999876


Q ss_pred             C
Q 017569          360 S  360 (369)
Q Consensus       360 g  360 (369)
                      |
T Consensus       311 g  311 (385)
T 1b5p_A          311 G  311 (385)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.88  E-value=1.2e-21  Score=188.19  Aligned_cols=265  Identities=13%  Similarity=0.072  Sum_probs=186.4

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+...+. ++++.+.+++.+.++.....|..  +..++++++++++++++|.+.+   ....++|+||++|+..++
T Consensus        33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~---~~~v~~~~g~~~a~~~~~  107 (391)
T 4dq6_A           33 DLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIK---SEWLIYSPGVIPAISLLI  107 (391)
T ss_dssp             CSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHHH
T ss_pred             CceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCc---HHHeEEcCChHHHHHHHH
Confidence            33455554444 34588899999888765444433  4588999999999999995431   135899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--C-CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--E-GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~-~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      .++..+             +++|+++.++|.++...++..|++++.+|++  + +++.+|+++|++++++ +++|++++|
T Consensus       108 ~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p  173 (391)
T 4dq6_A          108 NELTKA-------------NDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNP  173 (391)
T ss_dssp             HHHSCT-------------TCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESS
T ss_pred             HHhCCC-------------CCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECC
Confidence            887432             4689999999999999999999999999987  2 3478999999999988 999999999


Q ss_pred             CCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C----CCCcEEEEcCccCCC-CC
Q 017569          212 STLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L----PLVKSINVSGHKYGL-VY  282 (369)
Q Consensus       212 ~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~----~~~Dsi~~~~hK~l~-~p  282 (369)
                      +||||.+   +++++|+++|+++      ++++|+|++|+.+...   ......+. .    .....+..+.+|+++ .+
T Consensus       174 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G  244 (391)
T 4dq6_A          174 HNPVGRVWTKDELKKLGDICLKH------NVKIISDEIHSDIILK---KHKHIPMASISKEFEKNTITCMAPTKTFNIAG  244 (391)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCT---TCCCCCGGGSCHHHHHTEEEEECSHHHHTCGG
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHc------CCEEEeeccccccccC---CCCccCHHHcCccccCcEEEEEechhhccCcc
Confidence            9999999   7799999999999      9999999999875431   11111121 1    122366778999985 55


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      .+.|++++++++.. ..+........        .++.+.....++..++.. +.+.++++  +..++.+++.+.|++
T Consensus       245 ~r~G~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~  312 (391)
T 4dq6_A          245 LQSSYVVLPDEKDY-KLLDDAFTRID--------IKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINE  312 (391)
T ss_dssp             GCCEEEECCSHHHH-HHHHHHHHHTT--------CCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCHHHH-HHHHHHHHhhc--------CCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67898887653222 12111000000        012222223333344443 33445555  788899999999987

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.88  E-value=5.1e-22  Score=192.72  Aligned_cols=263  Identities=13%  Similarity=-0.007  Sum_probs=187.6

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|....+. +.++.+.+++ +.++.....|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+..++.+
T Consensus        46 i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~t~a~~~~~~~  121 (409)
T 2gb3_A           46 HHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAILFSFAV  121 (409)
T ss_dssp             EECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHHHHHHHH
T ss_pred             EeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH---HHEEEeCCHHHHHHHHHHH
Confidence            445444443 2356788888 8886654455555678899999999999888865421   3589999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +..+             +++|+++.++|.++..+++..|++++.+|+++ +++.+ +++|++++++++++|+++.++||+
T Consensus       122 ~~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~npt  187 (409)
T 2gb3_A          122 IANP-------------GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPT  187 (409)
T ss_dssp             HCCT-------------TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTT
T ss_pred             hCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCC
Confidence            7431             46899999999999999999999999999875 34566 899999998889999999999999


Q ss_pred             ccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCC-CCCeEEEEE
Q 017569          216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV-YAGVGWVVW  290 (369)
Q Consensus       216 G~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~-p~g~g~l~~  290 (369)
                      |.+.   ++++|.++|+++      ++++|+|++|+.+...  .+.... +. ....|.++.++||+++. +..+|++++
T Consensus       188 G~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~~--~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  258 (409)
T 2gb3_A          188 GVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVFR--GEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLIT  258 (409)
T ss_dssp             CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CCCcCHHHHHHHHHHHHHc------CCEEEEECcccccccC--CCCCCc-cccCCCCEEEEecchhccCCccceEEEEEE
Confidence            9984   589999999999      9999999999875531  111111 22 34678999999999853 345899987


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ++++.. ..+.......       +   +.+   .+.++++...+  +.++++++  +..++.+++.+.|++.|+
T Consensus       259 ~~~~l~-~~l~~~~~~~-------~---~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  319 (409)
T 2gb3_A          259 RNEELI-SHAMKLAQGR-------L---APP---LLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGL  319 (409)
T ss_dssp             SCHHHH-HHHHHHHHHS-------C---CCC---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHH-HHHHHHHhcc-------C---CCC---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            542222 2211100000       0   111   23333333444  55667766  788899999999988753

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.88  E-value=3.7e-21  Score=186.74  Aligned_cols=273  Identities=11%  Similarity=-0.000  Sum_probs=185.8

Q ss_pred             cCCCCccccccccCC-ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      +++..++|+.+.+.. +++.+.+++.++++.. ...|....+..++++++.+++.+.+|.+.+.  ...+++|+||++|+
T Consensus        35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~--~~~v~~t~g~~~a~  112 (412)
T 2x5d_A           35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP--ESEAIVTIGSKEGL  112 (412)
T ss_dssp             TTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESCHHHHH
T ss_pred             cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC--CcCEEEcCChHHHH
Confidence            444445666655542 4577888888887653 3344445678899999999998888975311  02489999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEe
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      .+++.++..+             +++|+++.++|..+...++..|++++.+|++++ ++.+|+++|++++++++++|+++
T Consensus       113 ~~~~~~~~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~  179 (412)
T 2x5d_A          113 AHLMLATLDH-------------GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG  179 (412)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred             HHHHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence            9998886431             468999999999999999999999999999764 46789999999998889999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      .|+||||.+.+   +++|+++|+++      ++++|+|++|+.+...--.+..-..+. ..+.+.++.+++|+++ .+.+
T Consensus       180 ~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  253 (412)
T 2x5d_A          180 FPSNPTAQCVELDFFERVVALAKQY------DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWR  253 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccc
Confidence            99999999855   78899999999      999999999987653100000001111 1356788899999986 4456


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +|++++++ +.. ..+.....+..         ++-+   .+.++++...+  +.+.++++  +..++.+++.+.|++.|
T Consensus       254 ~G~~~~~~-~~~-~~l~~~~~~~~---------~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  319 (412)
T 2x5d_A          254 IGFMVGNP-ELV-SALARIKSYHD---------YGTF---TPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAG  319 (412)
T ss_dssp             CEEEEECH-HHH-HHHHHHHHHHC---------CCCC---HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEcCH-HHH-HHHHHHHhhhc---------cCCC---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            89998743 222 22211000000         1112   22333333333  33456665  78889999999998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.88  E-value=2.5e-21  Score=189.15  Aligned_cols=273  Identities=14%  Similarity=0.058  Sum_probs=187.8

Q ss_pred             CCccccccccC-----CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~~-----~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      +.++|+.+.+.     ++++.+.+++.+.+.... ..|....+..++++++.+++.+. |.+.+   ...+++|+||++|
T Consensus        55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~---~~~v~~t~g~t~a  130 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLE---AKDVILTSGCSQA  130 (427)
T ss_dssp             CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCC---GGGEEEESSHHHH
T ss_pred             CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCC---hHHEEEecCcHHH
Confidence            33677777654     456888998888876542 34445567778887754444332 22221   1358999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      +.+++.++.++             +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++++++|++
T Consensus       131 l~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i  197 (427)
T 3dyd_A          131 IDLCLAVLANP-------------GQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIV  197 (427)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEE
T ss_pred             HHHHHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEE
Confidence            99998887542             46899999999999999999999999999864 45789999999999988999999


Q ss_pred             eeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEE-EEcCccC-CCC
Q 017569          209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSI-NVSGHKY-GLV  281 (369)
Q Consensus       209 ~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi-~~~~hK~-l~~  281 (369)
                      +.|+||||.+.+   +++|+++|+++      ++++++|++|+++...   ......+.  ....+.+ +.+++|. +..
T Consensus       198 ~~p~nptG~~~~~~~l~~i~~~~~~~------~~~~i~Deay~~~~~~---g~~~~~~~~~~~~~~vi~~~S~sK~~~~~  268 (427)
T 3dyd_A          198 NNPSNPCGSVFSKRHLQKILAVAARQ------CVPILADEIYGDMVFS---DCKYEPLATLSTDVPILSCGGLAKRWLVP  268 (427)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTTTCBCS---SCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcCchhhccC---CCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence            999999999988   99999999999      9999999999976531   11111111  1122334 4589997 555


Q ss_pred             CCCeEEEEEeCCCCcc-cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          282 YAGVGWVVWRTKDDLP-DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~-~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      +.+.|+++++++.... ..+........    ..  ..+.+.....++..+|.....+.+.++  +..++.+++.+.|++
T Consensus       269 G~riG~~~~~~~~~~~~~~i~~~l~~~~----~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~  342 (427)
T 3dyd_A          269 GWRLGWILIHDRRDIFGNEIRDGLVKLS----QR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA  342 (427)
T ss_dssp             GGCCEEEEEECSTTSSHHHHHHHHHHHH----HH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEecCcchhhHHHHHHHHHHHH----hc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5778999988642110 11100000000    00  012223334444555555556667766  788899999999998


Q ss_pred             cC
Q 017569          359 SS  360 (369)
Q Consensus       359 ~g  360 (369)
                      .+
T Consensus       343 ~~  344 (427)
T 3dyd_A          343 IP  344 (427)
T ss_dssp             ST
T ss_pred             CC
Confidence            74

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.88  E-value=2.4e-23  Score=200.64  Aligned_cols=262  Identities=11%  Similarity=-0.050  Sum_probs=176.2

Q ss_pred             cccccCCChHHHHHHHHHHhcc---CCCC----CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHH
Q 017569           61 ASFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIML  132 (369)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~  132 (369)
                      .+-.|++.++.|.+++...+..   |+..    ...++...++.+++++.+++++|++.+    ..+++ |+|||+++.+
T Consensus        31 ~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~  106 (386)
T 3qm2_A           31 FSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN----YKVLFCHGGGRGQFAG  106 (386)
T ss_dssp             CCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT----EEEEEEESCTTHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHH
Confidence            4445667778888888766533   2111    011334456667889999999999641    24777 6899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhhcCcEEEE
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      ++..+..+             ++++++...+|++  +...++..| .++.++++  +++..+++++++++++++|++|.+
T Consensus       107 ai~~l~~~-------------gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~  172 (386)
T 3qm2_A          107 VPLNLLGD-------------KTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHY  172 (386)
T ss_dssp             HHHHHCTT-------------CCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEE
T ss_pred             HHHhccCC-------------CCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEE
Confidence            98876431             3455443333333  344456678 89999988  442248888898899999999999


Q ss_pred             eeCCCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          209 ILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       209 ~~~~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      ++.+|.+|.+ .|+++|+     +      ++++|||++++.+..       +++++.  .|.+++++|||+ +|.|.|+
T Consensus       173 ~h~et~tG~~i~pi~~i~-----~------g~~~~vDa~qs~g~~-------pidv~~--~~~~~~s~hK~l-GP~G~g~  231 (386)
T 3qm2_A          173 CPNETIDGIAIDETPDFG-----P------EVVVTADFSSTILSA-------PLDVSR--YGVIYAGAQKNI-GPAGLTL  231 (386)
T ss_dssp             CSEETTTTEECCCCCCCC-----T------TCCEEEECTTTTTSS-------CCCGGG--CSEEEEETTTTT-CCTTEEE
T ss_pred             ECCcCCcCEecCchhhhc-----C------CCEEEEEcccccCCC-------CCCccc--cCEEEEeccccc-CCCccEE
Confidence            9999999995 9999986     7      999999999987665       344442  345678899999 6999999


Q ss_pred             EEEeCCCCcccccccccCccC--CCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          288 VVWRTKDDLPDELVFHINYLG--SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~--~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      +++|++... ......+.++.  .........+|.+...++++..+++.+..+ |++++  +..+++++++++|+++|++
T Consensus       232 l~v~~~~~~-~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~  310 (386)
T 3qm2_A          232 VIVREDLLG-KAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFY  310 (386)
T ss_dssp             EEEEGGGCS-CCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred             EEECHHHHh-hhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            999875321 11001111211  000111223688888889999999999888 89988  9999999999999998863

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.88  E-value=1.4e-21  Score=187.54  Aligned_cols=261  Identities=13%  Similarity=0.009  Sum_probs=182.4

Q ss_pred             cccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           59 NLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +|....+. ++++.+.+++.++++. ...|....+..++++.    +++++|.++     ..+++|+||++|+..++.++
T Consensus        29 ~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~----la~~~~~~~-----~~v~~~~g~~~a~~~~~~~~   98 (381)
T 1v2d_A           29 NLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREA----LAEEFAVEP-----ESVVVTSGATEALYVLLQSL   98 (381)
T ss_dssp             ECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESSHHHHHHHHHHHH
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHH----HHHhcCCCh-----hhEEEcCChHHHHHHHHHHh
Confidence            44444333 3457788888888865 3334434456666665    667788875     24899999999999998887


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ..+             +++|+++.++|.++...++..|++++.+|++  ++++.+|+++|++++++++++|++++++|||
T Consensus        99 ~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~npt  165 (381)
T 1v2d_A           99 VGP-------------GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPT  165 (381)
T ss_dssp             CCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             CCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCC
Confidence            431             4689999999999999999999999999987  4458999999999998889999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      |.+.|   +++|+++|+++      ++++|+|++|+++... -.+.....+ ..+.|.++.++||+++ .+.++|+++++
T Consensus       166 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~g-~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~~~~  237 (381)
T 1v2d_A          166 GLVFGERELEAIARLARAH------DLFLISDEVYDELYYG-ERPRRLREF-APERTFTVGSAGKRLEATGYRVGWIVGP  237 (381)
T ss_dssp             CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS-SCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEEECC
T ss_pred             CCccCHHHHHHHHHHHHHc------CCEEEEEcCccccccC-CCCCCHHHh-cCCCEEEEeechhhcCCcccceEEEEeC
Confidence            99855   89999999999      9999999999875431 000001111 3478999999999975 23458999874


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc-HhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      + +.. +.+.....+.     .    ++.+.....++..+|+... .++++++  +..++++++.+.|++.|+
T Consensus       238 ~-~~~-~~~~~~~~~~-----~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  299 (381)
T 1v2d_A          238 K-EFM-PRLAGMRQWT-----S----FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGL  299 (381)
T ss_dssp             T-TTH-HHHHHHHHHH-----T----SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             H-HHH-HHHHHHHhhc-----c----cCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3 332 2221111110     0    1222222233334444332 4456666  888999999999998653

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.88  E-value=4.6e-21  Score=183.25  Aligned_cols=262  Identities=13%  Similarity=0.087  Sum_probs=186.7

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ++..++|....+.. +++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.   ..+++|+||++|+..
T Consensus        28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~  104 (370)
T 2z61_A           28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP---DNIIITGGSSLGLFF  104 (370)
T ss_dssp             TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG---GGEEEESSHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEECCChHHHHHH
Confidence            44445555555543 35778888888876544445445578899999999999888865422   358999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      ++.++..+             +++|++++++|.++...++..|++++.+|       +|+++|++++++++++|+++.|+
T Consensus       105 ~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p~  164 (370)
T 2z61_A          105 ALSSIIDD-------------GDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSPS  164 (370)
T ss_dssp             HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESSC
T ss_pred             HHHHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCCC
Confidence            98887432             46899999999999999999999988887       68999999998888999999999


Q ss_pred             CCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEE
Q 017569          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       213 ~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~  290 (369)
                      ||+|.+.|++ |.++|+++      ++++++|++|+.+...- .+.....+. ..+.|.+..++||+++ .+.+.|+++.
T Consensus       165 nptG~~~~~~-l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  236 (370)
T 2z61_A          165 NPLGEVIDRE-IYEFAYEN------IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS  236 (370)
T ss_dssp             TTTCCCCCHH-HHHHHHHH------CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CCcCcccCHH-HHHHHHHc------CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEE
Confidence            9999999999 99999999      99999999999755310 010011221 2467889999999985 3344899887


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh---cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL---GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l---g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++ +.. +.+.......     .    ++.   ..+.++++...+   +.+.++++  +..++.+++.+.|++.|
T Consensus       237 ~~-~~~-~~~~~~~~~~-----~----~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  297 (370)
T 2z61_A          237 ND-EII-EAILKLQQNL-----F----ISA---PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG  297 (370)
T ss_dssp             CH-HHH-HHHHHHHHHH-----T----SSS---CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CH-HHH-HHHHHHHhhc-----c----cCC---CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            54 222 2221100000     0    111   133344444444   34555655  78889999999998865

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.88  E-value=2.3e-21  Score=183.80  Aligned_cols=251  Identities=10%  Similarity=-0.038  Sum_probs=176.3

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ++++++.+.+++.+.++.    |....+..++++++++++++++|.++     ..+++|+||++|+..++.+++++    
T Consensus        23 ~~~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~----   89 (359)
T 1svv_A           23 SVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP----   89 (359)
T ss_dssp             SSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT----
T ss_pred             cCCCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC-----ccEEEeCCchHHHHHHHHHHhCC----
Confidence            335568888998888753    22334557788899999999999765     34899999999999999887542    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHH--HHhhhcceeEEEeccCCccccCHHHHHHHHhhc-------CcEEEEeeCCCCc
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEK--FARYFEVELKEVKLEEGYYVMNPVKAVELVDEN-------TICVAAILGSTLT  215 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~--~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~-------~~~v~~~~~~~~t  215 (369)
                               +++|+++.++|.++..  .++..|++++.+|.+  ++.+|+++|+++++++       +++|+++.+ |||
T Consensus        90 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt  157 (359)
T 1svv_A           90 ---------WEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV  157 (359)
T ss_dssp             ---------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred             ---------CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence                     4689999999999888  478889999999986  4899999999999876       789999988 689


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC-CCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      |.+.|   +++|.++|+++      ++++|+|++|.++..... +.....+.+ ..+|++++++||++ +|.++|+++++
T Consensus       158 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~  229 (359)
T 1svv_A          158 GTQYTKQELEDISASCKEH------GLYLFLDGARLASALSSP-VNDLTLADIARLTDMFYIGATKAG-GMFGEALIILN  229 (359)
T ss_dssp             SCCCCHHHHHHHHHHHHHH------TCEEEEECTTHHHHHTST-TCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECS
T ss_pred             ceecCHHHHHHHHHHHHHh------CCEEEEEccchhhhhcCC-CcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEc
Confidence            99987   99999999999      999999999955432111 110001000 25799999999985 68888988875


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      + +.. +.+.... ...+.  .+    +.... ....+  ...+..+++.++  +..++++++.+.|+..|
T Consensus       230 ~-~~~-~~~~~~~-~~~~~--~~----~~~~~-~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~  288 (359)
T 1svv_A          230 D-ALK-PNARHLI-KQRGA--LM----AKGWL-LGIQF--EVLMKDNLFFELGAHSNKMAAILKAGLEACG  288 (359)
T ss_dssp             G-GGC-TTHHHHH-HHTTC--CC----TTTHH-HHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             c-cHH-HHHHHHH-hcCCc--cc----ccchh-hHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence            3 222 2221100 00110  00    00111 11111  234555666666  88999999999994333

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.88  E-value=8.5e-22  Score=190.38  Aligned_cols=267  Identities=11%  Similarity=-0.023  Sum_probs=189.4

Q ss_pred             ccccccccC--CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           58 LNLASFVTT--WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        58 ~~l~~~~~~--~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ++|+.+.+.  ++++.+.+++.+++... ...|....+..++++++.+++++++|.+.+.  ....++|+||++|+..++
T Consensus        42 id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~--~~~i~~~~g~~~a~~~~~  119 (407)
T 3nra_A           42 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDA--RDGLIITPGTQGALFLAV  119 (407)
T ss_dssp             EETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHHH
T ss_pred             eeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCCcHHHHHHHH
Confidence            456554443  45577888888777643 2234455678899999999999999986421  135899999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-----CCccccCHHHHHHHHhhcCcEEEEe
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-----EGYYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-----~~~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      .++..+             +++|+++.++|.++...++..|++++.+|++     ++++.+|+++|++++++++++|+++
T Consensus       120 ~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~  186 (407)
T 3nra_A          120 AATVAR-------------GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS  186 (407)
T ss_dssp             HTTCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEE
T ss_pred             HHhCCC-------------CCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEc
Confidence            876432             4689999999999999999999999999983     2458999999999999999999999


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-----CCCCcEEEEcCccCCC-
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-----LPLVKSINVSGHKYGL-  280 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-----~~~~Dsi~~~~hK~l~-  280 (369)
                      .|+||||.+.|   +++|+++|+++      ++++|+|++|+.+...   ......+.     ....+.+..+++|+++ 
T Consensus       187 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  257 (407)
T 3nra_A          187 NPNNPAGVVYSAEEIGQIAALAARY------GATVIADQLYSRLRYA---GASYTHLRAEAAVDAENVVTIMGPSKTESL  257 (407)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCT---TCCCCCGGGCTTSCGGGEEEEECSSSTTCC
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCCChhhcCcccCCcEEEEeCcccccCC
Confidence            99999999987   99999999999      9999999999875541   11111111     1345677888999986 


Q ss_pred             CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--HhhHHHH--HhhHHHHHHHHHH
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEVIPSF--CCVDHKKLSSFFV  356 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--~~G~~~~--~~~~~a~~l~~~L  356 (369)
                      .+.+.|+++.++ +.. ..+........         .+.   ..+.++++...+.  .+.++++  +..++.+++++.|
T Consensus       258 ~G~r~G~~~~~~-~~~-~~l~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  323 (407)
T 3nra_A          258 SGYRLGVAFGSR-AII-ARMEKLQAIVS---------LRA---AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVL  323 (407)
T ss_dssp             GGGCCEEEEECH-HHH-HHHHHHHHHHT---------SSS---CHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeEEEEEcCH-HHH-HHHHHHHhhhc---------cCC---ChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            456789887642 222 12111000000         111   1233444444442  2445555  7888999999999


Q ss_pred             HhcCCC
Q 017569          357 IHSSYF  362 (369)
Q Consensus       357 ~~~g~~  362 (369)
                      ++.+.+
T Consensus       324 ~~~~~~  329 (407)
T 3nra_A          324 RGCEGV  329 (407)
T ss_dssp             HTSTTC
T ss_pred             hcCCCc
Confidence            987433

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=2.3e-21  Score=186.49  Aligned_cols=236  Identities=8%  Similarity=-0.026  Sum_probs=174.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~-  168 (369)
                      ++...++.+++++++++++|.+.      ..++|+|||+|+..++..+ .             .+++|+++.+.|++.. 
T Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~sgt~a~~~~~~~~-~-------------~gd~vi~~~~~~~~~~~   89 (379)
T 3ke3_A           30 SKAFQEVMNDLLSNLKTVYNAEA------AVIIPGSGTYGMEAVARQL-T-------------IDEDCLIIRNGWFSYRW   89 (379)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSE------EEEEESCHHHHHHHHHHHH-C-------------TTCEEEEEECSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCC------EEEEcCChhHHHHHHHHhC-C-------------CCCeEEEEeCCchhHHH
Confidence            45667888899999999999872      3788899999998876433 1             1468999988887643 


Q ss_pred             -HHHhhhcc--eeEEEeccCC-------c-cccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhh
Q 017569          169 -KFARYFEV--ELKEVKLEEG-------Y-YVMNPVKAVELVD-ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNE  233 (369)
Q Consensus       169 -~~~~~~G~--~v~~v~~~~~-------~-~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~  233 (369)
                       ..++..|+  +++.++++.+       . ..+|+++|+++++ +++++|++++++|++|.+.|   +++|+++|+++  
T Consensus        90 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~--  167 (379)
T 3ke3_A           90 TQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV--  167 (379)
T ss_dssp             HHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc--
Confidence             44555664  6777876431       1 2689999999996 48999999999999999999   99999999999  


Q ss_pred             ccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc--ccCccCC--
Q 017569          234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF--HINYLGS--  309 (369)
Q Consensus       234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~--~~~y~~~--  309 (369)
                          ++++|+|++++ +..+       +++...++|.++.++|||+++|.|.|+++++++ .. +.+..  ...|...  
T Consensus       168 ----~~~li~D~~~~-g~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~l~~~~~~~~~~~~~  233 (379)
T 3ke3_A          168 ----GGLLVIDCIAS-GCVW-------LDMKELGIDVLISAPQKGWSSTPCAGLVMLSAA-AI-KKVESTESNCFSLDLK  233 (379)
T ss_dssp             ----TCEEEEECTTC-TTCC-------CCHHHHTCSEEEECTTTTTCSCCCEEEEEECHH-HH-HHHHTCCCSCSTTCHH
T ss_pred             ----CCEEEEEeccc-CCcc-------ccccccCCCEEEecchhhcCCCCceEEEEECHH-HH-HhhhcCCCCceeecHH
Confidence                99999999987 4331       233223789999999999999999999998653 11 11110  0111100  


Q ss_pred             ---------CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          310 ---------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       310 ---------~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                               ........+|.+....+++.+++..+..+|++++  +..++++++++.|+++|+
T Consensus       234 ~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~  296 (379)
T 3ke3_A          234 QWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGI  296 (379)
T ss_dssp             HHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                     0000011246666667778888998888888888  899999999999999875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.88  E-value=1.9e-21  Score=189.43  Aligned_cols=270  Identities=12%  Similarity=0.019  Sum_probs=189.2

Q ss_pred             CCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+...+. +.++.+.+++.+.++.....|...  ..++++++++++++.+|.+.+   ...+++|+|+++|+..++
T Consensus        62 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~---~~~v~~~~g~~ea~~~a~  136 (421)
T 3l8a_A           62 ELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVV---KEDILFIDGVVPAISIAL  136 (421)
T ss_dssp             TCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHHHHH
T ss_pred             CeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCC---HHHEEEcCCHHHHHHHHH
Confidence            33455444443 345788898888886544444333  378999999999999995532   245899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHh-hcCcEEEEeeC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAILG  211 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~-~~~~~v~~~~~  211 (369)
                      .++..+             +++|+++.++|..+..++...|.+++.+|++  +.++.+|+++|+++++ +++++|+++.+
T Consensus       137 ~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p  203 (421)
T 3l8a_A          137 QAFSEK-------------GDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSP  203 (421)
T ss_dssp             HHHSCT-------------EEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESS
T ss_pred             HHhcCC-------------CCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCC
Confidence            887432             3689999999999999999999999999985  3457899999999998 68999999999


Q ss_pred             CCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEEcCccCCC-CCCCe
Q 017569          212 STLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVSGHKYGL-VYAGV  285 (369)
Q Consensus       212 ~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~~~hK~l~-~p~g~  285 (369)
                      +||+|.+   +++++|+++|+++      ++++|+|++|+++...--....-..+.  ....+.+..+++|+++ .+.+.
T Consensus       204 ~nptG~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~  277 (421)
T 3l8a_A          204 HNPGGRVWDNDDLIKIAELCKKH------GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN  277 (421)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhhe
Confidence            9999998   7899999999999      999999999987553100000001111  1244577788999985 55678


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |++++++++.. ..+........     +   ++.+.....++.++++. +.+.++++  +..++.+++++.|++.
T Consensus       278 G~~~~~~~~l~-~~~~~~~~~~~-----~---~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (421)
T 3l8a_A          278 SFAIIQNESLR-RKFQYRQLANN-----Q---HEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAK  343 (421)
T ss_dssp             EEEECCSHHHH-HHHHHHHHHTT-----C---SCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeEEcCCHHHH-HHHHHHHHhcc-----c---CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99988654332 22211100000     0   12222223444444443 44556666  7888999999999876

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.87  E-value=1.8e-21  Score=192.92  Aligned_cols=281  Identities=12%  Similarity=0.052  Sum_probs=171.5

Q ss_pred             HHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCC--CCCC-----CCcchHHHHHHHHHHHHHHhCCCCCC
Q 017569           42 AYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNY--VDMD-----EYPVTTELQNRCVNMIAHLFNTPVAD  114 (369)
Q Consensus        42 i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~--~~~~-----~~~~~~~le~~~~~~la~l~g~~~~~  114 (369)
                      +.+.+.++..... ..++|.. .+++.++.|.+++.+.+.+..  +++.     ..+...++|+.+++++++++|++.++
T Consensus        42 ~~~~~~~e~~rq~-~~i~lia-s~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~  119 (490)
T 2a7v_A           42 MWELLQREKDRQC-RGLELIA-SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ  119 (490)
T ss_dssp             HHHHHHHHHHHHH-HSEECCT-TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTT
T ss_pred             HHHHHHHHHHHHH-cCceEEC-CCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCccc
Confidence            5555554443222 1223322 344567889999888774432  2221     11234589989999999999998621


Q ss_pred             CCCC-CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH--------HHHhhhcceeEE--Eec
Q 017569          115 DKTA-VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE--------KFARYFEVELKE--VKL  183 (369)
Q Consensus       115 ~~~~-~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~--------~~~~~~G~~v~~--v~~  183 (369)
                         . ..+++++|++||..++.++.++             +++|+++.+.|.++.        ..+...|..++.  +++
T Consensus       120 ---~~~~v~~~sGt~An~~al~al~~p-------------GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v  183 (490)
T 2a7v_A          120 ---WGVNVQPYSGSPANLAVYTALLQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL  183 (490)
T ss_dssp             ---EEEECCCSSHHHHHHHHHHHHCCS-------------CEECCC-------------------------------CCB
T ss_pred             ---CceEEeCCchHHHHHHHHHHHcCC-------------CCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc
Confidence               1 1355668999999999887542             478999888775421        123455655444  445


Q ss_pred             cCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc
Q 017569          184 EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (369)
Q Consensus       184 ~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (369)
                      +++++.+|+++|++++.+ +|++|+++.++++  ...|+++|+++|+++      ++++|+|+|++.+..  .....+..
T Consensus       184 d~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~------g~~livD~Ah~~glv--~~g~~~~~  253 (490)
T 2a7v_A          184 NPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEV------KAHLLADMAHISGLV--AAKVIPSP  253 (490)
T ss_dssp             CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHT------TCEEEEECGGGHHHH--HTTSSCCG
T ss_pred             ccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHc------CCEEEEccccccccc--cCCcCCCC
Confidence            555689999999999974 7888877666554  567999999999999      999999999865433  11111122


Q ss_pred             ccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC-------------CcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD-------------DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       263 ~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~-------------~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      +  .++|+++.++||++.+|.| |++++++.-             .+...+  +. ..     .+.++++.....++++.
T Consensus       254 ~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i--~~-~~-----~~g~qggp~~~~iaAla  322 (490)
T 2a7v_A          254 F--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRI--NF-AV-----FPSLQGGPHNHAIAAVA  322 (490)
T ss_dssp             G--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHH--HH-HH-----TTTTCCSCCHHHHHHHH
T ss_pred             C--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHH--HH-Hh-----cccCCCCchHHHHHHHH
Confidence            2  3789999999999988876 888887631             010110  00 00     11123455555566666


Q ss_pred             HHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          330 YQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       330 ~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ++++....+++.++  +..+++++|++.|++.|+
T Consensus       323 ~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~  356 (490)
T 2a7v_A          323 VALKQACTPMFREYSLQVLKNARAMADALLERGY  356 (490)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            67776654555655  899999999999999875

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.87  E-value=5.5e-22  Score=189.95  Aligned_cols=248  Identities=14%  Similarity=0.050  Sum_probs=167.7

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHh
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (369)
                      ++.+.+++.+.+..+.  +...+...++|++    +++++|.+.       +++++||++|+..++.++ ..        
T Consensus        16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~----la~~~~~~~-------~i~~~sgt~al~~~l~~l~~~--------   74 (373)
T 3frk_A           16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQE----FADYCNVNY-------CIGCGNGLDALHLILKGYDIG--------   74 (373)
T ss_dssp             HHHHHHHHHHHHHHTC--CSSSHHHHHHHHH----HHHHHTSSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred             CHHHHHHHHHHHHCCC--ccCCchHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence            3567777777776543  2344555556555    888888864       899999999999988876 22        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l  227 (369)
                           .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++
T Consensus        75 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l  146 (373)
T 3frk_A           75 -----FGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRI  146 (373)
T ss_dssp             -----TTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHH
T ss_pred             -----CcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHH
Confidence                 1469999999999999999999999999999865699999999999998888777   67899999999999999


Q ss_pred             HHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc--CccCCCCCCCeEEEEEeCCCCcccccccccC
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHIN  305 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  305 (369)
                      |+++      ++++|+|++|+.+..  ....   ... ...|.++++  .||+++++...|+++.++.+.. ..+..-..
T Consensus       147 ~~~~------~~~li~D~a~~~g~~--~~~~---~~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~-~~~~~~~~  213 (373)
T 3frk_A          147 AKKY------NLKLIEDAAQAHGSL--YKGM---KVG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLA-EKIKALSN  213 (373)
T ss_dssp             HHHH------TCEEEEECTTCTTCE--ETTE---ETT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHH-HHHHHHHB
T ss_pred             HHHc------CCEEEEECCcccCCE--ECCE---ecc-ccccEEEEeCcCCCccCccceeEEEEeCCHHHH-HHHHHHHh
Confidence            9999      999999999986543  1111   111 125777777  7799966344577766543222 11110000


Q ss_pred             ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       306 y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +...........|.......+  .+++.....++++++  +..++++++++.|++.+
T Consensus       214 ~g~~~~~~~~~~g~~~~~~~~--~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  268 (373)
T 3frk_A          214 YGSEKKYHHIYKGFNSRLDEL--QAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN  268 (373)
T ss_dssp             TTCSBTTBCCSCCCBCCCCHH--HHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             cCcccCCccccccccCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            000000000001111111122  223333334455656  88899999999998876

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.87  E-value=3.3e-21  Score=185.50  Aligned_cols=251  Identities=11%  Similarity=0.011  Sum_probs=171.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHH-HHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI-AHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~l-a~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~  144 (369)
                      +++.+.+++.++++.+...+ ..+...++|++    + ++++| .+       ..++++|||+|+.+++.++ ..     
T Consensus        14 ~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~----~~a~~~g~~~-------~~v~~~sgt~al~~al~~l~~~-----   76 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYTN-YGPINQRFEQT----IMSGFFQNRG-------AVTTVANATLGLMAAIQLKKRK-----   76 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHH----HHHHTSTTCS-------EEEEESCHHHHHHHHHHHHSCT-----
T ss_pred             CcHHHHHHHHHHHHcCCccc-CCHHHHHHHHH----HHHHHhCCCC-------eEEEeCCHHHHHHHHHHHcCCC-----
Confidence            34667888888887655331 24566667666    7 88888 33       2799999999999988876 33     


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHH-hhc--CcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DEN--TICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i-~~~--~~~v~~~~~~~~tG~~~~l  221 (369)
                              .+++|+++.++|.++..++...|++++++|++++++.+|+++|++++ +++  |++|+   +++++|.+.|+
T Consensus        77 --------~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~  145 (377)
T 3ju7_A           77 --------KGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNL  145 (377)
T ss_dssp             --------TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCC
T ss_pred             --------CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCH
Confidence                    14799999999999999999999999999998656999999999998 666  88776   67889999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|.++|+ +      ++++|+|++|+.+..  .... ...-....++.+++++||++++ ...|+++.++++... .+.
T Consensus       146 ~~i~~la~-~------~~~vi~D~a~a~g~~--~~~~-~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~-~~~  213 (377)
T 3ju7_A          146 EEYEELEK-K------GVPVVVDAAPGFGLM--NGGM-HYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQ-RIK  213 (377)
T ss_dssp             HHHHHHHH-T------TCCBEEECTTCTTCE--ETTE-ETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHH-HHH
T ss_pred             HHHHHHHh-c------CCEEEEECCCccCCe--ECCE-eccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHH-HHH
Confidence            99999999 9      999999999976543  1110 1100112456677778999976 455777766543321 111


Q ss_pred             cccCccCCC-CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          302 FHINYLGSD-QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       302 ~~~~y~~~~-~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .-..+ +.. .......|.+.....+.++..+..+  +.+..+  +..++++++.+.|++.+.
T Consensus       214 ~~~~~-g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~  273 (377)
T 3ju7_A          214 RMGNF-GFDTNRECTMMGFNCKMSEYAAAIGIATM--KKWDDKLKERTRISEWYKQLLQSNGL  273 (377)
T ss_dssp             HHTBT-TBCTTSCBCSSCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhc-CCCCCCceeeccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            10000 100 0001111222223344444444444  344555  888999999999998874

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.87  E-value=1.8e-21  Score=187.84  Aligned_cols=257  Identities=11%  Similarity=-0.011  Sum_probs=179.1

Q ss_pred             cccccccc-CC-ChHHHHHHHHHHhccCCCCC---CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           58 LNLASFVT-TW-MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        58 ~~l~~~~~-~~-~~~~v~~~~~~~~~~n~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ++|..+.+ +. +++.+.+++.++++.....+   ....+..++.+++++++++++|.+.       +++|+||++|+..
T Consensus        46 idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------v~~~~ggt~a~~~  118 (398)
T 3a2b_A           46 LMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA-------AILFSTGFQSNLG  118 (398)
T ss_dssp             EECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHH
T ss_pred             EEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHH
Confidence            34444443 32 45778888877775432222   2233566788899999999999753       8999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEE
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAA  208 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~  208 (369)
                      ++.++..+             ++.|+++.++|.++..+++..|++++.+|+      +|+++|++++++    ++++|++
T Consensus       119 ~~~~~~~~-------------gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~  179 (398)
T 3a2b_A          119 PLSCLMGR-------------NDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLICT  179 (398)
T ss_dssp             HHHHSSCT-------------TCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred             HHHHHhCC-------------CCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEEE
Confidence            98887432             468999999999999999999999988875      478999999987    7899999


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccC-CCCcEEEEcCccCCCCCCCeE
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRL-PLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~-~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      +.++||||.+.|+++|.++|+++      ++++|+|++|+.+..... +..... ... .++|.++.++||+++ |.| |
T Consensus       180 ~~~~nptG~~~~~~~l~~~~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G  250 (398)
T 3a2b_A          180 DGIFSMEGDIVNLPELTSIANEF------DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLA-SLG-G  250 (398)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTC-SSC-E
T ss_pred             eCCCCCCCCccCHHHHHHHHHHc------CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEeccccccc-CCC-c
Confidence            99999999999999999999999      999999999986543100 000011 111 247999999999986 667 8


Q ss_pred             EEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          287 WVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +++.++ +.. +.+... ..+...        ++.+....+.+..+|+.+.  .+.++  +..++.+++.+.|++.|+
T Consensus       251 ~~~~~~-~~~-~~l~~~~~~~~~~--------~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~  316 (398)
T 3a2b_A          251 FVAGDA-DVI-DFLKHNARSVMFS--------ASMTPASVASTLKALEIIQ--NEPEHIEKLWKNTDYAKAQLLDHGF  316 (398)
T ss_dssp             EEEECH-HHH-HHHHHHCHHHHSS--------BCCCHHHHHHHHHHHHHHH--HCTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCH-HHH-HHHHHhcccceec--------CCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            888743 222 222111 112111        1222222233445555542  23333  788899999999988753

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.87  E-value=1e-20  Score=181.95  Aligned_cols=250  Identities=11%  Similarity=0.042  Sum_probs=168.7

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHh
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (369)
                      .+.+.+++.++++.+...+...+...+++++    +++++|.+.       .+++++|++|+.+++.++ ..        
T Consensus        16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~----la~~~~~~~-------~i~~~sGt~al~~~l~~l~~~--------   76 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH-------ALAVTNGTHALELALQVMGVG--------   76 (388)
T ss_dssp             CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred             CHHHHHHHHHHHHcCCeeecCCHHHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence            3778888888886643333344556666655    788888763       455556699999998876 22        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l  227 (369)
                           .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++
T Consensus        77 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l  148 (388)
T 1b9h_A           77 -----PGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKI  148 (388)
T ss_dssp             -----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHH
T ss_pred             -----CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHH
Confidence                 1468999999999999999999999999999875689999999999988887766   89999999999999999


Q ss_pred             HHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCC--ccccccccc
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD--LPDELVFHI  304 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~--~~~~~~~~~  304 (369)
                      |+++      ++++|+|++|+.+..+  ..   ..+. ...++.++++.||++.++ ..|+++.+++..  . ..+....
T Consensus       149 a~~~------~~~li~D~a~~~g~~~--~~---~~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~-~~~~~~~  215 (388)
T 1b9h_A          149 SADT------GVPLLQDAAHAHGARW--QG---KRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKY-ETAFLRH  215 (388)
T ss_dssp             HHHH------TCCBCEECTTCTTCEE--TT---EEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHH-HHHHHHT
T ss_pred             HHHc------CCEEEEecchhcCCcc--CC---eecccccceEEEEccCCCcccCC-CeEEEEECCHHHHHH-HHHHHHH
Confidence            9999      9999999999864431  11   1122 224788888899999765 568888765433  2 1211100


Q ss_pred             CccCCC-CCCc--cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          305 NYLGSD-QPTF--TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       305 ~y~~~~-~~~~--~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .+.... ...+  ...|+......+.++..+..+  +.+.+.  +..++++++.+.|++.+
T Consensus       216 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~  274 (388)
T 1b9h_A          216 SCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL--ARLDEQIAVRDERWTLLSRLLGAID  274 (388)
T ss_dssp             BTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             hCCCCccCccceeecccccCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCC
Confidence            100000 0000  011221111223333333322  234444  77788999999999873

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.87  E-value=1.9e-21  Score=185.79  Aligned_cols=252  Identities=10%  Similarity=-0.006  Sum_probs=170.9

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .++.++.+.+++.+.++....+  ..+...    ++++.+++++|.+.       +++|+||++|+.+++.+++..    
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~--~~~~~~----~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~~~~~----   70 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQLT--QGKRSL----LFEEALCEFLGVKH-------ALVFNSATSALLTLYRNFSEF----   70 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCCS--SSHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHSSCC----
T ss_pred             CCCCCHHHHHHHHHHHHcCccc--CChHHH----HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhccc----
Confidence            3455688889998888654332  233333    45556888888863       899999999999998887210    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL  224 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I  224 (369)
                            -..+++|+++.++|.++..++...|++++.+|++++ +.+|+++|++++++++++|+++++   +|.+.|+++|
T Consensus        71 ------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i  140 (375)
T 2fnu_A           71 ------SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVEVESV  140 (375)
T ss_dssp             ------CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHH
T ss_pred             ------CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHH
Confidence                  001468999999999999999999999999999875 589999999999888888777665   8999999999


Q ss_pred             HHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeC-CCCccccccc
Q 017569          225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRT-KDDLPDELVF  302 (369)
Q Consensus       225 ~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~-~~~~~~~~~~  302 (369)
                      .++|+++      ++++|+|++|+.+..+  ..   ..+. ...++..++++||++ +| |.|++++++ ++.. +.+..
T Consensus       141 ~~l~~~~------~~~li~D~a~~~~~~~--~~---~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~-~~~~~  206 (375)
T 2fnu_A          141 QKLCKKH------SLSFLSDSSHALGSEY--QN---KKVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELH-EKMKL  206 (375)
T ss_dssp             HHHHHHH------TCEEEEECTTCTTCEE--TT---EETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHH-HHHHH
T ss_pred             HHHHHHc------CCEEEEECccccCCeE--CC---eeccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHH-HHHHH
Confidence            9999999      9999999999865442  11   0121 223677788888998 55 788888853 3222 11111


Q ss_pred             ccCccCCC---CCCc--cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          303 HINYLGSD---QPTF--TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       303 ~~~y~~~~---~~~~--~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ... .+..   ...+  ...+.+.....+...+++.  ..++++++  +..++++++.+.|++.+
T Consensus       207 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~  268 (375)
T 2fnu_A          207 FRS-HGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS--QLKKAPFLMQKREEAALTYDRIFKDNP  268 (375)
T ss_dssp             HTB-TTEEESSSSCEEESSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHh-cCCccccccccccccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            000 0000   0000  0011111122333333332  23566666  88899999999999863

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.87  E-value=8.5e-21  Score=180.03  Aligned_cols=254  Identities=13%  Similarity=0.002  Sum_probs=179.2

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|....+. ++++.+.+++.+.+... ..| ..++    ..++++++++++|+++     ...++|+||++|+..++.+
T Consensus        19 i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~----~~~l~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~   87 (354)
T 3ly1_A           19 IRINFNENPLGMSPKAQAAARDAVVKA-NRY-AKNE----ILMLGNKLAAHHQVEA-----PSILLTAGSSEGIRAAIEA   87 (354)
T ss_dssp             EECSSCCCSSCCCHHHHHHHHHTGGGT-TSC-CHHH----HHHHHHHHHHHTTSCG-----GGEEEESHHHHHHHHHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHhhC-cCC-CCCc----hHHHHHHHHHHhCCCh-----HHEEEeCChHHHHHHHHHH
Confidence            455544433 35688899988887642 222 1223    3456667899999865     3589999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh--hcCcEEEEeeCCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTL  214 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~~~~~  214 (369)
                      +..+             +++|+++.++|.++...++..|++++.+|.+++ +.+|+++|+++++  +++++|++++++||
T Consensus        88 l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~np  153 (354)
T 3ly1_A           88 YASL-------------EAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNNP  153 (354)
T ss_dssp             HCCT-------------TCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSCTT
T ss_pred             HhCC-------------CCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCCCC
Confidence            7432             468999999999999999999999999999864 8999999999999  78999999999999


Q ss_pred             cccCCCHHHHHHHHHH--hhhccCCCceEEeecccccccccccCCC-cccc-ccCC-CCcEEEEcCccCCC-CCCCeEEE
Q 017569          215 TGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFLYPD-LEWD-FRLP-LVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~--~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~-~~~~-~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      ||.+.|.+++.++++.  +      ++++|+|++|+.+...  ... .... .... ..+.++.+++|+++ .+.+.|++
T Consensus       154 tG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  225 (354)
T 3ly1_A          154 TGTITPADVIEPWIASKPA------NTMFIVDEAYAEFVND--PRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYA  225 (354)
T ss_dssp             TCCCCCHHHHHHHHHTCCT------TEEEEEECTTGGGCCC--TTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEE
T ss_pred             cCCCcCHHHHHHHHHhCCC------CeEEEEeccHHHhccc--cccCCHHHHhhhcCCCEEEEeeChhhccChhhhheee
Confidence            9999999888888887  7      9999999999875431  100 0111 1112 45677888999986 56678988


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +..+ +.. +.+.....       .    ++.+   .+.++++...+.. +.+.++  +..++.+++++.|++.|
T Consensus       226 ~~~~-~~~-~~~~~~~~-------~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~  284 (354)
T 3ly1_A          226 VAHP-TVI-ALMGRYVA-------G----EKIN---FSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK  284 (354)
T ss_dssp             ECCH-HHH-HHHGGGTT-------C----SCCC---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCH-HHH-HHHHHhcC-------C----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            8632 221 22111000       0    1222   3334444444422 445555  78889999999998875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.87  E-value=4.7e-21  Score=186.87  Aligned_cols=270  Identities=12%  Similarity=0.041  Sum_probs=189.0

Q ss_pred             ccccccccC-CChHHHHHHHHHHhcc---CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeCCchHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIML  132 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~---n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~Ggt~a~~~  132 (369)
                      ++|..+.+. ++++.+.+++.+.++.   ....|....+..++++++.+++.+.+|.+.+   .. .+++|+||++|+..
T Consensus        40 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~---~~~~v~~~~g~~~a~~~  116 (429)
T 1yiz_A           40 LNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN---PMTEVLVTVGAYEALYA  116 (429)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC---TTTSEEEESHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC---CcCCEEEecChHHHHHH
Confidence            344444443 3457788888888865   2334444456889999999999998896532   13 58999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhhcC
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENT  203 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~~  203 (369)
                      ++.++..+             +++|+++.++|..+...++..|++++.+|++.+         ++.+|+++|++++++++
T Consensus       117 ~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  183 (429)
T 1yiz_A          117 TIQGHVDE-------------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT  183 (429)
T ss_dssp             HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred             HHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence            98887432             468999999999999999999999999998764         47899999999998889


Q ss_pred             cEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-ccc-CCCCcEEEEcCccC
Q 017569          204 ICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFR-LPLVKSINVSGHKY  278 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~~Dsi~~~~hK~  278 (369)
                      ++|+++.++||||.+.   ++++|+++|+++      ++++|+|++|+++...- .+...+ .+. ..+.|.+..+++|+
T Consensus       184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~sK~  256 (429)
T 1yiz_A          184 KMIIINTPHNPLGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVFEP-FEHIRICTLPGMWERTITIGSAGKT  256 (429)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTT-SCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred             eEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CcEEEEeccccccccCC-CCCcChhhccCCcCceEEEecchhc
Confidence            9999999999999996   499999999999      99999999998754310 010111 121 23678899999998


Q ss_pred             CC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh----c--HhhHHHH--HhhHHH
Q 017569          279 GL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL----G--FEVIPSF--CCVDHK  349 (369)
Q Consensus       279 l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l----g--~~G~~~~--~~~~~a  349 (369)
                      ++ .+..+|++++++ +.. +.+.....+.     .    ++.+.....++..+|+..    +  .+.++++  +..++.
T Consensus       257 ~~~~G~r~G~~~~~~-~~~-~~l~~~~~~~-----~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  325 (429)
T 1yiz_A          257 FSLTGWKIGWAYGPE-ALL-KNLQMVHQNC-----V----YTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR  325 (429)
T ss_dssp             HTCGGGCCEEEESCH-HHH-HHHHHHHHTT-----T----CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             cCCCCcceEEEEeCH-HHH-HHHHHHHhhc-----c----cCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence            75 234489998753 222 2221100000     1    122222233344455541    3  3445555  778889


Q ss_pred             HHHHHHHHhcCC
Q 017569          350 KLSSFFVIHSSY  361 (369)
Q Consensus       350 ~~l~~~L~~~g~  361 (369)
                      +++.+.|++.|+
T Consensus       326 ~~l~~~L~~~g~  337 (429)
T 1yiz_A          326 DYMASFLAEVGM  337 (429)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCC
Confidence            999999988653

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.87  E-value=1.4e-21  Score=186.86  Aligned_cols=248  Identities=12%  Similarity=0.050  Sum_probs=168.8

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      ++.+.+++.+.+.....  ...+...++|++    +++++|.+.       +++++|||+|+..++.++.-         
T Consensus        15 ~~~v~~a~~~~~~~~~~--~~~~~~~~l~~~----la~~~~~~~-------~~~~~sGt~al~~al~~~~~---------   72 (367)
T 3nyt_A           15 KDKIDAGIQRVLRHGQY--ILGPEVTELEDR----LADFVGAKY-------CISCANGTDALQIVQMALGV---------   72 (367)
T ss_dssp             HHHHHHHHHHHHHHCCC--SSCHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHTTC---------
T ss_pred             CHHHHHHHHHHHhcCCc--cCChHHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHhCC---------
Confidence            35677777777765432  344555566555    888888864       89999999999999887621         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                         ..+++|+++.++|.++..++...|++++.++++++++.+|+++|++++++++++|+   ++|++|.+.|+++|.++|
T Consensus        73 ---~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la  146 (367)
T 3nyt_A           73 ---GPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIA  146 (367)
T ss_dssp             ---CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             ---CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHH
Confidence               02468999999999999999999999999999876689999999999988888776   888999999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc--CccCCCCCCCeEEEEEeCCCCcccccccccCc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHINY  306 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  306 (369)
                      +++      ++++|+|++|+.+..  ....   .....+ |.++.|  +||+++++...|+++.++++.. ..+... ..
T Consensus       147 ~~~------~~~li~D~a~~~g~~--~~~~---~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~-~~~~~~-~~  212 (367)
T 3nyt_A          147 SKY------GIPVIEDAAQSFGAS--YKGK---RSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDELA-TAIRQI-AR  212 (367)
T ss_dssp             HHT------TCCBEEECTTTTTCE--ETTE---ETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHHHH-HHHHHH-TB
T ss_pred             HHc------CCEEEEECccccCCe--ECCe---eccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHHHH-HHHHHH-Hh
Confidence            999      999999999875433  1111   111112 777777  6999966344677776554332 111110 00


Q ss_pred             cCCC-CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          307 LGSD-QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       307 ~~~~-~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .+.. .......|.......+.+++++..+.  .+++.  +..++++++++.|++.|
T Consensus       213 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~~  267 (367)
T 3nyt_A          213 HGQDRRYHHIRVGVNSRLDTLQAAILLPKLE--IFEEEIALRQKVAAEYDLSLKQVG  267 (367)
T ss_dssp             TTEEETTEECSCCCBCCCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCcCceeeccCcCCCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCC
Confidence            0000 00000001111222344444444442  34444  78889999999999886

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.87  E-value=6.1e-21  Score=184.10  Aligned_cols=266  Identities=12%  Similarity=0.045  Sum_probs=183.7

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+...+. ++++.+.+++.+.++.....|...  ..++++++.+++++.+|.+.+   ...+++|+||++|+..++.+
T Consensus        34 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~---~~~v~~t~g~~~a~~~~~~~  108 (399)
T 1c7n_A           34 VPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ---TDWIINTAGVVPAVFNAVRE  108 (399)
T ss_dssp             CCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC---GGGEEEESSHHHHHHHHHHH
T ss_pred             eeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCC---hhhEEEcCCHHHHHHHHHHH
Confidence            344444443 345788888888876543444332  788999999999988885431   13589999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CC-ccccCHHHHHHHHh-hcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (369)
                      +..+             +++|+++.++|.++...++..|++++.+|++ ++ ++.+|+++|+++++ +++++|++++++|
T Consensus       109 l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~n  175 (399)
T 1c7n_A          109 FTKP-------------GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHN  175 (399)
T ss_dssp             HCCT-------------TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBT
T ss_pred             hcCC-------------CCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCC
Confidence            7432             4689999999999999999999999999885 32 36799999999998 6788999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C----CCCcEEEEcCccCCC-CCCC
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L----PLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~----~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      |||.+.|   +++|+++|+++      ++++|+|++|+.+...   ......+. .    ...+.+..+.+|+++ .+.+
T Consensus       176 ptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  246 (399)
T 1c7n_A          176 PVGRVWKKDELQKIKDIVLKS------DLMLWSDEIHFDLIMP---GYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG  246 (399)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHS------SCEEEEECTTTTCBCT---TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred             CCCcCcCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCcccHHHcCccccCcEEEEEeChhhccccchh
Confidence            9999987   99999999999      9999999999875431   11011111 1    234567778999986 4456


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh-cC
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH-SS  360 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~-~g  360 (369)
                      +|++++++++.. ..+.......     .+   ++.+.....++..++.. +.+.++++  +..++.+++.+.|++ .+
T Consensus       247 ~G~~~~~~~~~~-~~l~~~~~~~-----~~---~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~  315 (399)
T 1c7n_A          247 MSNIIIKNPDIR-ERFTKSRDAT-----SG---MPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHP  315 (399)
T ss_dssp             CEEEECCCHHHH-HHHHHHHHHT-----TC---CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             eEEEEECCHHHH-HHHHHHHhhc-----cc---CCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            799987643332 2221100000     00   12222222222233332 34556665  788899999999987 53

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.87  E-value=8.2e-21  Score=184.33  Aligned_cols=270  Identities=12%  Similarity=0.029  Sum_probs=186.5

Q ss_pred             cccccccc-----CCChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHh------CCCCCCCCCCCeEEeCC
Q 017569           58 LNLASFVT-----TWMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLF------NTPVADDKTAVGVGTVG  125 (369)
Q Consensus        58 ~~l~~~~~-----~~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~------g~~~~~~~~~~~~~t~G  125 (369)
                      ++|+.+.|     .++++.+.+++.++++.. ...|....+..++++++.+++.+.+      |.+.+   ...+++|+|
T Consensus        36 i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~---~~~v~~~~g  112 (416)
T 1bw0_A           36 IKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV---KDNVVLCSG  112 (416)
T ss_dssp             EECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC---GGGEEEESH
T ss_pred             EEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC---cceEEEeCC
Confidence            45555543     244677888888887653 2334444578899999888887432      32221   135899999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCc
Q 017569          126 SSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTI  204 (369)
Q Consensus       126 gt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~  204 (369)
                      |++|+.+++.++..+             +++|+++.++|..+..+++..|++++.+|++++ ++.+|+++|+++++++++
T Consensus       113 ~~~al~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  179 (416)
T 1bw0_A          113 GSHGILMAITAICDA-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTK  179 (416)
T ss_dssp             HHHHHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEE
T ss_pred             hHHHHHHHHHHhCCC-------------CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCe
Confidence            999999988887432             468999999999999999999999999998653 478999999999988889


Q ss_pred             EEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC---cccccc-C--CCCcEEEEcC
Q 017569          205 CVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD---LEWDFR-L--PLVKSINVSG  275 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~---~~~~~~-~--~~~Dsi~~~~  275 (369)
                      +|+++.|+||||.+.|   +++|+++|+++      ++++|+|++|+.+...  ...   ....+. .  ..-+.++.+.
T Consensus       180 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~s~  251 (416)
T 1bw0_A          180 LLIVTNPSNPCGSNFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVFK--GKDPNATFTSVADFETTVPRVILGGT  251 (416)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBCC--SSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred             EEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEccccccccC--CCCCCCCccCHHHccCCCcEEEEecc
Confidence            9999999999999988   99999999999      9999999999875431  110   011111 1  1123556679


Q ss_pred             ccCCCCC-CCeEEEEEeCC-CCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHH
Q 017569          276 HKYGLVY-AGVGWVVWRTK-DDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKK  350 (369)
Q Consensus       276 hK~l~~p-~g~g~l~~~~~-~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~  350 (369)
                      +|+++.| ...|+++++++ +... .+.... .+..       ..++.+.....++..+|+..+.++++++  +..++.+
T Consensus       252 sK~~~~~Glr~G~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  323 (416)
T 1bw0_A          252 AKNLVVPGWRLGWLLYVDPHGNGP-SFLEGLKRVGM-------LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM  323 (416)
T ss_dssp             TTTTSCGGGCCEEEEEECTTCSCH-HHHHHHHHHHH-------HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCceEEEEEeeCchhhHH-HHHHHHHHHhc-------cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            9996543 56899998765 3332 221100 0000       0122223333444455554456677776  7889999


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      ++.+.|++.
T Consensus       324 ~l~~~L~~~  332 (416)
T 1bw0_A          324 YLYNHIGEC  332 (416)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHhC
Confidence            999999886

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.87  E-value=4.4e-20  Score=176.57  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=179.3

Q ss_pred             CChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      ++++.+.+++.+.++..   ...|....+ .++++++.+++.+.+|.+.+   ....++|+|+++++..++.++..+   
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~---~~~v~~~~G~~~al~~~~~~l~~~---  115 (369)
T 3cq5_A           43 PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVT---RDNLWAANGSNEILQQLLQAFGGP---  115 (369)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCC---GGGEEEESHHHHHHHHHHHHHCST---
T ss_pred             CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCC---hHhEEECCChHHHHHHHHHHhcCC---
Confidence            34577888887776542   333333233 68999999999988776532   135899999999998888877432   


Q ss_pred             HHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHH
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~  222 (369)
                                +++|+++.++|.++...++..|++++.+|.+++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus       116 ----------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~  184 (369)
T 3cq5_A          116 ----------GRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD-FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD  184 (369)
T ss_dssp             ----------TCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT-SSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred             ----------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence                      468999999999999999999999999998754 78999999999988 899999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCC-CcEEEEcCccCCC-CCCCeEEEEEeCCCCcccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPL-VKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~-~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~  299 (369)
                      ++.++|+.+      ++++++|++|+.+..+   +. .... ...+ .+.++.++||+++ .+.++|++++++ +.. ..
T Consensus       185 ~l~~l~~~~------~~~li~De~~~~~~~~---~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~-~~  252 (369)
T 3cq5_A          185 DVERIINVA------PGIVIVDEAYAEFSPS---PS-ATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-AFI-DA  252 (369)
T ss_dssp             HHHHHHHHC------SSEEEEECTTGGGCCS---CC-GGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT-HHH-HH
T ss_pred             HHHHHHHhC------CCEEEEECCchhhcCC---cc-hHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH-HHH-HH
Confidence            999999999      9999999999876531   11 1111 1123 5577888999986 344679998853 222 22


Q ss_pred             cccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc-HhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       300 ~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +....       ..    ++.   ..+.++++...+. .+.+.++  +..++.+++.+.|++.|
T Consensus       253 l~~~~-------~~----~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  302 (369)
T 3cq5_A          253 VMLVR-------LP----YHL---SALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELG  302 (369)
T ss_dssp             HHTTS-------CT----TCS---CHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcC-------CC----CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            21100       01    111   1334444444442 2345555  78889999999998765

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.86  E-value=1.1e-21  Score=187.61  Aligned_cols=259  Identities=15%  Similarity=0.056  Sum_probs=172.9

Q ss_pred             CCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        56 p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      +.++++...+.. .+ +.+.+.+.+....  +...+...++++.    +++++|.+.       +++++||++|+..++.
T Consensus         7 ~~~~l~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~----la~~~~~~~-------~~~~~~gt~a~~~~~~   71 (374)
T 3uwc_A            7 PYSYLERQFADI-EP-YLNDLREFIKTAD--FTLGAELEKFEKR----FAALHNAPH-------AIGVGTGTDALAMSFK   71 (374)
T ss_dssp             CSCCHHHHTSSC-HH-HHHHHHHHHHHTC--CSSCHHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHH
T ss_pred             eeeccccCCCCc-hH-HHHHHHHHHHcCC--cccChhHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHH
Confidence            334444444433 34 7777777776543  3344555555554    888888863       8999999999988888


Q ss_pred             HH-HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          136 AF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~-~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ++ ..             .+++|+++.++|.++..+++..|++++.+|+++ ++.+|+++|++++++++++|+   ++||
T Consensus        72 ~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~  134 (374)
T 3uwc_A           72 MLNIG-------------AGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIM---PVHY  134 (374)
T ss_dssp             HTTCC-------------TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TSSBCGGGTGGGCCTTEEEEC---CBCG
T ss_pred             HcCCC-------------CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHhCCCCceEEE---EeCC
Confidence            76 22             146899999999999999999999999999984 589999999999988887776   8899


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRT  292 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~  292 (369)
                      +|.+.|+++|.++|+++      ++++|+|++|+.+..  ....   .. ....|.++.++|  |+++++...|+++.++
T Consensus       135 ~G~~~~~~~i~~~~~~~------~~~li~D~~~~~g~~--~~~~---~~-~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~  202 (374)
T 3uwc_A          135 TGNIADMPALAKIAKKH------NLHIVEDACQTILGR--INDK---FV-GSWGQFACFSLHPLKNLNVWSDAGVIITHS  202 (374)
T ss_dssp             GGCCCCHHHHHHHHHHT------TCEEEEECTTCTTCE--ETTE---ET-TSSSSEEEEECSSSSSSCCSSCCEEEEESC
T ss_pred             cCCcCCHHHHHHHHHHc------CCEEEEeCCCccCce--eCCe---ec-cccccEEEEeCCCCCcCCccceeEEEEeCC
Confidence            99999999999999999      999999999986543  1111   11 112599999977  9996634467777655


Q ss_pred             CCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       293 ~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +... ..+.....+...........+....  ...+.+++.....++++++  +..++++++++.|.+.+.
T Consensus       203 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  270 (374)
T 3uwc_A          203 DEYA-EKLRLYRNHGLINRDVCVEYGINCR--MDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSE  270 (374)
T ss_dssp             HHHH-HHHHHHTBTTEEETTEESSCCCBCB--CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTT
T ss_pred             HHHH-HHHHHHHhcCccccCccccccccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3322 1111100000000000000011111  1122233333334566666  888999999999998774

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.86  E-value=1.3e-20  Score=179.60  Aligned_cols=258  Identities=13%  Similarity=0.017  Sum_probs=177.0

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+...+. ++++.+.+++.+.++... .|....+ .+++    +.+++++|+++     ..+++|+||++|+..++.
T Consensus        32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~y~~~~~-~~lr----~~la~~~~~~~-----~~v~~~~g~~~a~~~~~~  100 (365)
T 3get_A           32 VIKLASNENPFGTPPKAIECLRQNANKAH-LYPDDSM-IELK----STLAQKYKVQN-----ENIIIGAGSDQVIEFAIH  100 (365)
T ss_dssp             CEECSSCCCTTCSCHHHHHHHHHHGGGTT-SCCCTTC-HHHH----HHHHHHHTCCG-----GGEEEESSHHHHHHHHHH
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHhhc-cCCCCCh-HHHH----HHHHHHhCCCc-----ceEEECCCHHHHHHHHHH
Confidence            3455544333 356788999888886432 2222222 4444    45788888765     358999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++.++             +++|+++.++|..+...++..|++++.+|++.+++ +|+++|++++++++++|++++|+|||
T Consensus       101 ~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~npt  166 (365)
T 3get_A          101 SKLNS-------------KNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPL  166 (365)
T ss_dssp             HHCCT-------------TCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTT
T ss_pred             HHhCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCC
Confidence            87432             47899999999999999999999999999833358 99999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHH--HhhhccCCCceEEeecccccccc--cccCCCcccc-ccCCCCcEEEEcCccCCC-CCCCeEEEE
Q 017569          216 GEFEDVKLLHDLLT--KKNEETGWDTPIHVDAASGGFIA--PFLYPDLEWD-FRLPLVKSINVSGHKYGL-VYAGVGWVV  289 (369)
Q Consensus       216 G~~~~l~~I~~l~~--~~~~~~~~~~~l~vD~a~~~~~~--~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~-~p~g~g~l~  289 (369)
                      |.+.|++++.++++  ++      ++++++|++|+.+..  .--.+..... ......+.+..+++|+++ .+.+.|+++
T Consensus       167 G~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  240 (365)
T 3get_A          167 GECLDASEATEFIKGVNE------DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI  240 (365)
T ss_dssp             CCCCCHHHHHHHHHTSCT------TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred             CCCcCHHHHHHHHHhCCC------CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence            99999999999988  66      999999999986541  1000000111 112245677788999985 556789998


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc-HhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . +++.. ..+.....       .    .+.+   .+.++++...+. .+.+.++  +..++.+++.+.|++.|+
T Consensus       241 ~-~~~~~-~~~~~~~~-------~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~  299 (365)
T 3get_A          241 A-NANII-SAFYKLRA-------P----FNVS---NLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKHNI  299 (365)
T ss_dssp             E-CHHHH-HHHHHHSC-------T----TCSC---HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             c-CHHHH-HHHHHhcC-------C----CCcC---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7 33222 22111000       1    1122   233333333332 2455555  788899999999998753

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.86  E-value=1.7e-21  Score=187.67  Aligned_cols=248  Identities=10%  Similarity=0.008  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (369)
                      +.+.+.+.+.+..+... ...++..+++++    +++++|.+.       +++++||++|+..++.++ ..         
T Consensus        36 ~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~----la~~~~~~~-------~i~~~~gt~al~~~l~~~~~~---------   94 (391)
T 3dr4_A           36 GNERDYVLECMDTTWIS-SVGRFIVEFEKA----FADYCGVKH-------AIACNNGTTALHLALVAMGIG---------   94 (391)
T ss_dssp             SSHHHHHHHHHHHTCCS-SCSHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHHHHHHcCCcc-CCChHHHHHHHH----HHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence            55677777776654322 134555555555    788888863       899999999999998887 32         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                          .+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+   ++||+|.+.|+++|.++|
T Consensus        95 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~  167 (391)
T 3dr4_A           95 ----PGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVA  167 (391)
T ss_dssp             ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             ----CcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHH
Confidence                1468999999999999999999999999999865689999999999998888776   578999999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCcc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL  307 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~  307 (369)
                      +++      ++++|+|++|+.+...  .+.   ... ...+++++++.||++.++ ..|+++.+++... ..+..-..+.
T Consensus       168 ~~~------~~~li~D~a~~~g~~~--~~~---~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~-~~~~~~~~~g  234 (391)
T 3dr4_A          168 RRH------NLLVIEDAAEAVGATY--RGK---KSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLA-AKMRLLRGQG  234 (391)
T ss_dssp             HHT------TCEEEEECTTCTTCEE--TTE---ETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHH-HHHHHHHBTT
T ss_pred             HHc------CCEEEEECcccccceE--CCe---eecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHH-HHHHHHHhcC
Confidence            999      9999999999864431  111   111 223666666699999664 4577766543222 1111000000


Q ss_pred             CC--CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          308 GS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       308 ~~--~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..  ....+...+.....  ..+.+++.....++++++  +..++++++++.|++.|
T Consensus       235 ~~~~~~~~~~~~g~~~~~--~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  289 (391)
T 3dr4_A          235 MDPNRRYWFPIVGFNYRM--TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLG  289 (391)
T ss_dssp             CCTTSTTCCSSCCCBCBC--CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             CCCCCcccccccccccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            00  00000111212121  222233333334566666  88899999999999874

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.86  E-value=9.7e-21  Score=181.07  Aligned_cols=267  Identities=9%  Similarity=-0.021  Sum_probs=185.4

Q ss_pred             cCCCCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           53 DGNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        53 ~~~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      +++..++|+...+. ++++.+.+++.+.+......|.. .+ .++++++.+++.+.+|.+.+   ....++|+||++|+.
T Consensus        21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~---~~~i~~t~g~~~a~~   95 (377)
T 3fdb_A           21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQAR---PEWIFPIPDVVRGLY   95 (377)
T ss_dssp             SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCC---GGGEEEESCHHHHHH
T ss_pred             cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCC---HHHEEEeCChHHHHH
Confidence            44555566555443 34678889988888764444444 44 78899999999988886642   245899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      .++.++..+             +++|+++.++|.++...++..|++++.+|++++   +|+++|++++++++++|+++.|
T Consensus        96 ~~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~p  159 (377)
T 3fdb_A           96 IAIDHFTPA-------------QSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCNP  159 (377)
T ss_dssp             HHHHHHSCT-------------TCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHhcCC-------------CCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeCC
Confidence            988887432             468999999999999999999999999999864   9999999999999999999999


Q ss_pred             CCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc---CCCCcEEEEcCccCCC-CCCC
Q 017569          212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR---LPLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       212 ~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      +||||.+.|   +++|+++|+++      ++++|+|++|+.+...  .......+.   ....+.+..+.+|+++ .+.+
T Consensus       160 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  231 (377)
T 3fdb_A          160 YNPLGMVFAPEWLNELCDLAHRY------DARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWNIAGLK  231 (377)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhccCcchh
Confidence            999999864   77788889999      9999999999875431  101111221   0123466778999984 5567


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .|++++.+++.. ..+.....+.         .++-+.....++..+++. +.+.++++  +..++.+++.+.|++.
T Consensus       232 ~G~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (377)
T 3fdb_A          232 CAQIIFSNPSDA-EHWQQLSPVI---------KDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKR  297 (377)
T ss_dssp             CEEEECCSHHHH-HHHHHSCHHH---------HCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heEEEeCCHHHH-HHHHHHHHhh---------cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888776543322 2211100000         012222222222333332 23455555  7888999999999873

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.86  E-value=1e-20  Score=181.21  Aligned_cols=270  Identities=11%  Similarity=-0.048  Sum_probs=185.0

Q ss_pred             cCCCCccccccccCC-ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      .++..++|+...+.. +++.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+.  ...+++|+|+++|+
T Consensus        23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~--~~~v~~~~g~~~a~  100 (376)
T 2dou_A           23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP--RREALALIGSQEGL  100 (376)
T ss_dssp             TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT--TTSEEEESSHHHHH
T ss_pred             cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccEEEcCCcHHHH
Confidence            344445565555442 3577889988887543 2333333467889999888888888986321  12589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      ..++.++.++             +++|+++.++|..+...++..|++++.+|+ ++++.+|+++|++++++++++|+++.
T Consensus       101 ~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~  166 (376)
T 2dou_A          101 AHLLLALTEP-------------EDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNY  166 (376)
T ss_dssp             HHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECS
T ss_pred             HHHHHHhcCC-------------CCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECC
Confidence            9988887432             468999999999999999999999999998 44578999999999988899999999


Q ss_pred             CCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEEEEcCccCCC-CCCCe
Q 017569          211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGV  285 (369)
Q Consensus       211 ~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~  285 (369)
                      |+||||.+.|   +++|+++|+++      ++++|+|++|+.+...- .+...... .....+.+..+++|+++ .+.+.
T Consensus       167 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  239 (376)
T 2dou_A          167 PNNPTGAVADWGYFEEALGLARKH------GLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRL  239 (376)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC
T ss_pred             CCCCcCccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhhee
Confidence            9999999865   78899999999      99999999998765310 01001111 11245677788999985 44568


Q ss_pred             EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       286 g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |+++.++ +.. ..+.......     .    ++.+   .+.+.++...+  +.+.+.++  +..++.+++.+.|++.
T Consensus       240 G~~~~~~-~~~-~~l~~~~~~~-----~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (376)
T 2dou_A          240 GFALGSE-EAL-ARLERVKGVI-----D----FNQY---AGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV  303 (376)
T ss_dssp             EEEEECH-HHH-HHHHHHHHHH-----C----CCSC---HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEecCH-HHH-HHHHHHHHhc-----c----cCCC---HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9987642 222 2221100000     0    1111   22333333333  24456655  7788899999999875

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.86  E-value=5.5e-21  Score=184.04  Aligned_cols=249  Identities=12%  Similarity=-0.047  Sum_probs=171.9

Q ss_pred             ChHHHHHHHHHHhccCCCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .++.+.+++.+.++.....+.   ...+......++++++++++|.+.       .+++++|++|+..++.++.++    
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~l~~~~~~----  126 (399)
T 3tqx_A           58 DHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-------TILYSSCFDANGGLFETLLGP----  126 (399)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-------EEEECchHHHHHHHHHHhcCC----
Confidence            357777877777654221111   112344556677788999999863       566677799998888776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCcccC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF  218 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~  218 (369)
                               ++.|+++.++|.++...++..|++++.+|.      +|+++|++++++      ++++|+++.++||||.+
T Consensus       127 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~  191 (399)
T 3tqx_A          127 ---------EDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGII  191 (399)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEE
T ss_pred             ---------CCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCc
Confidence                     469999999999999999999999988875      356788888876      78999999999999999


Q ss_pred             CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-c-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      .|+++|.++|+++      ++++|+|++|+.+..+.. ....... . ....|.++.++||+++++.| |+++.++ +..
T Consensus       192 ~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~  262 (399)
T 3tqx_A          192 ADLKSICDLADKY------NALVMVDDSHAVGFIGEN-GRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EII  262 (399)
T ss_dssp             CCHHHHHHHHHHT------TCEEEEECTTTTTTSSTT-SCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHH
T ss_pred             CCHHHHHHHHHHc------CCEEEEECCccccccCCC-CCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHH
Confidence            9999999999999      999999999974332100 0001111 1 23679999999999986766 8887643 222


Q ss_pred             cccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          297 PDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       297 ~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       +.+.. ...|..        .++.+.....++..+++.+. ++..++  +..++.+++.+.|++.|+
T Consensus       263 -~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~  320 (399)
T 3tqx_A          263 -EWLRNRSRPYLF--------SNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGF  320 (399)
T ss_dssp             -HHHHHHCHHHHS--------SCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHhCcceec--------cCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCC
Confidence             22211 111211        12333333445555555553 455555  889999999999998764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.86  E-value=2.2e-20  Score=179.83  Aligned_cols=255  Identities=9%  Similarity=0.005  Sum_probs=177.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHH-HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTE-LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      ++++.+.+++.+.++.....|...  ..+ +++++.+++.+.+|.+.+   ...+++|+|+++|+.+++.++..+     
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~---~~~v~~t~g~~~al~~~~~~l~~~-----  110 (390)
T 1d2f_A           41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID---SQTVVYGPSVIYMVSELIRQWSET-----  110 (390)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC---GGGEEEESCHHHHHHHHHHHSSCT-----
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC---HHHEEEcCCHHHHHHHHHHHhcCC-----
Confidence            345788999888886543344332  567 899999999988885432   135899999999999988876431     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC--ccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCC--
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED--  220 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~--  220 (369)
                              +++|+++.++|..+...++..|++++.+|++.+  ++.+|+++|++++++ ++++|+++.|+||||.+.|  
T Consensus       111 --------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~  182 (390)
T 1d2f_A          111 --------GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD  182 (390)
T ss_dssp             --------TCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT
T ss_pred             --------CCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHH
Confidence                    468999999999999999999999999998642  367999999999986 7889999999999999865  


Q ss_pred             -HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C-CCC-cEEEEcCccCCC-CCCCeEEEEEeCCCC
Q 017569          221 -VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L-PLV-KSINVSGHKYGL-VYAGVGWVVWRTKDD  295 (369)
Q Consensus       221 -l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~-~~~-Dsi~~~~hK~l~-~p~g~g~l~~~~~~~  295 (369)
                       +++|+++|+++      ++++|+|++|+.+...   ......+. + ... |. ..+.+|+++ .+.++|++++++++.
T Consensus       183 ~l~~l~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~  252 (390)
T 1d2f_A          183 ELEIMADLCERH------GVRVISDEIHMDMVWG---EQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSS  252 (390)
T ss_dssp             HHHHHHHHHHHT------TCEEEEECTTTTCBCS---SSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHH
T ss_pred             HHHHHHHHHHHc------CCEEEEEccccccccC---CCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHH
Confidence             89999999999      9999999999875431   11111111 1 122 55 888999985 445679998865333


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      . ..+.....  +.  ..+   ++.+.....++..+++. +.+.++++  +..++.+++.+.|++
T Consensus       253 ~-~~~~~~~~--~~--~~~---~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~  308 (390)
T 1d2f_A          253 R-DAYLSALK--GR--DGL---SSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNA  308 (390)
T ss_dssp             H-HHHHHHHH--TT--SCC---CSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHh--hh--ccc---CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 12111000  00  010   12222222223333432 34455555  778889999999987

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.86  E-value=8.5e-21  Score=183.98  Aligned_cols=267  Identities=11%  Similarity=-0.057  Sum_probs=185.3

Q ss_pred             ccccccccCC-ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           58 LNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        58 ~~l~~~~~~~-~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      ++|+.+.+.. +++.+.+++.++++.. ...|....+..++++++.+++++.+|.+.+.  ...+++|+|+++|+..++.
T Consensus        50 idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~v~~t~G~~~al~~~~~  127 (404)
T 2o1b_A           50 INMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK--EDEVCILYGTKNGLVAVPT  127 (404)
T ss_dssp             EECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT--TTSEEEESSHHHHHHHHHH
T ss_pred             EecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--cccEEEcCCcHHHHHHHHH
Confidence            4555544432 3577888888887542 2233334578899999999999888986311  1248999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++..+             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|+++.|+|||
T Consensus       128 ~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt  194 (404)
T 2o1b_A          128 CVINP-------------GDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPT  194 (404)
T ss_dssp             HHCCT-------------TCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTT
T ss_pred             HhcCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCC
Confidence            87432             46899999999999999999999999999976457799999999998889999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEE
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~  290 (369)
                      |.+.|   +++|+++|+++      ++++++|++|+.+...- .+.....+. ..+.+.++.+++|+++ .+.++|+++.
T Consensus       195 G~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  267 (404)
T 2o1b_A          195 GSTATKEVFDEAIAKFKGT------DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG  267 (404)
T ss_dssp             CCCCCHHHHHHHHHHHTTS------SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred             CccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence            99864   78899999999      99999999998754310 010011111 1135677889999986 4456899877


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++ +.. ..+........         ++.+   .+.++++...+  +.+.++++  +..++.+++.+.|++.|
T Consensus       268 ~~-~~~-~~l~~~~~~~~---------~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  327 (404)
T 2o1b_A          268 NK-DMI-QALKKYQTHTN---------AGMF---GALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKAD  327 (404)
T ss_dssp             CH-HHH-HHHHHHHHHHC---------CCCC---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CH-HHH-HHHHHHHhhcc---------CCCC---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            43 222 22211000000         1122   23333333333  34456665  77888999999998875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.86  E-value=4.8e-21  Score=181.51  Aligned_cols=255  Identities=13%  Similarity=0.064  Sum_probs=173.4

Q ss_pred             cccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH
Q 017569           59 NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK  138 (369)
Q Consensus        59 ~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~  138 (369)
                      .|.+..+.++++.+.+++.+.+......   + +...+++++++++++++| +.     ..+++|+||++|+..++.+++
T Consensus        11 d~~~~~~~~~~~~v~~a~~~~~~~~~~~---~-~~~~~~~~l~~~la~~~g-~~-----~~v~~~~~gt~a~~~al~~~~   80 (356)
T 1v72_A           11 GFSSDNIAGASPEVAQALVKHSSGQAGP---Y-GTDELTAQVKRKFCEIFE-RD-----VEVFLVPTGTAANALCLSAMT   80 (356)
T ss_dssp             BCSCGGGCCCCHHHHHHHHHTTSSCCCS---T-TCSHHHHHHHHHHHHHHT-SC-----CEEEEESCHHHHHHHHHHTSC
T ss_pred             eeccCCccCCCHHHHHHHHhhccCcccc---c-ccchHHHHHHHHHHHHhC-CC-----CcEEEeCCccHHHHHHHHHhc
Confidence            3444444556688888888775321111   1 234566788889999999 32     237999999999999888764


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHHH--Hhhh--cceeEEEeccCCccccCHHHHHH-HHhh-------cCcEE
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF--ARYF--EVELKEVKLEEGYYVMNPVKAVE-LVDE-------NTICV  206 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~--~~~~--G~~v~~v~~~~~~~~~d~~~L~~-~i~~-------~~~~v  206 (369)
                      .+             +++|+++.++|+++...  +...  |++++.+|.+  ++.+|+++|++ ++++       ++++|
T Consensus        81 ~~-------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v  145 (356)
T 1v72_A           81 PP-------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACV  145 (356)
T ss_dssp             CT-------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred             CC-------------CCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEE
Confidence            32             46899999999987766  7777  9999888875  37899999999 8876       67899


Q ss_pred             EEeeCCCCccc---CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC-CCCcEEEEcCccCCCCC
Q 017569          207 AAILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVY  282 (369)
Q Consensus       207 ~~~~~~~~tG~---~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~Dsi~~~~hK~l~~p  282 (369)
                      +++.++| +|.   .+++++|.++|+++      ++++|+|++|+.+...+... ....+.+ .++|++++++||+ +.|
T Consensus       146 ~~~~~~~-tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~sK~-g~~  216 (356)
T 1v72_A          146 SITQATE-VGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGC-SPAEMTWKAGVDALSFGATKN-GVL  216 (356)
T ss_dssp             EEESSCT-TSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTC-CTTTTTGGGTCCEEEECCGGG-TCS
T ss_pred             EEEcCCC-CCccCCHHHHHHHHHHHHHc------CCeEEEEchhhHhHhccCCC-CHHHhhhhhcCCEEEEecccC-CCc
Confidence            9998865 999   57799999999999      99999999997543211110 0111111 2689999999999 568


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .|+|+++. +++.. ..+.....+.+          +........+...+..+..+.+.++  +..++++++++.|++.
T Consensus       217 ~G~g~~~~-~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (356)
T 1v72_A          217 AAEAIVLF-NTSLA-TEMSYRRKRAG----------HLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL  283 (356)
T ss_dssp             SCEEEEES-SGGGH-HHHHHHHHHTT----------CCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccEEEEE-CHHHH-hhHHHHhhccC----------chhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            88888876 33332 22111000111          1011112333345566655555554  7889999999999875

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.86  E-value=8.7e-21  Score=184.40  Aligned_cols=271  Identities=12%  Similarity=0.040  Sum_probs=190.2

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhccCC--CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINKNY--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ..++|+.+.+.. +++.+.+++.+++....  ..|....+..++++++.+++.+.+|.+.+.  ...+++|+||++|+..
T Consensus        29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~--~~~i~~~~g~~~a~~~  106 (422)
T 3fvs_A           29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP--LRNVLVTVGGYGALFT  106 (422)
T ss_dssp             CCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH--HHHEEEESHHHHHHHH
T ss_pred             CceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CCcEEEECChHHHHHH
Confidence            445666666553 45788888888876533  344444577899999999999999976421  0258999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-----------CccccCHHHHHHHHhh
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVDE  201 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~L~~~i~~  201 (369)
                      ++.++..+             +++|+++.++|..+...++..|++++.+|++.           +++.+|+++|++++++
T Consensus       107 ~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~  173 (422)
T 3fvs_A          107 AFQALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS  173 (422)
T ss_dssp             HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT
T ss_pred             HHHHHcCC-------------CCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC
Confidence            98887432             46899999999999999999999999999875           2468999999999998


Q ss_pred             cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc----CCCCcEEEEc
Q 017569          202 NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR----LPLVKSINVS  274 (369)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~----~~~~Dsi~~~  274 (369)
                      ++++|+++.|+||||.+.   ++++|+++|+++      ++++|+|++|+.+...   ......+.    ....+.+..+
T Consensus       174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~S  244 (422)
T 3fvs_A          174 RTKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVYD---GHQHISIASLPGMWERTLTIGS  244 (422)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSTTTGGGEEEEEE
T ss_pred             CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEEccchhhccC---CCCCCChhhcccccCcEEEEec
Confidence            999999999999999997   699999999999      9999999999875431   11111111    1134466777


Q ss_pred             CccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH------hcHhhHHHH--Hh
Q 017569          275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEVIPSF--CC  345 (369)
Q Consensus       275 ~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~------lg~~G~~~~--~~  345 (369)
                      .+|.++ .+.+.|+++.+++ .. ..+..   ....  ..    ++-+.....++..++..      ...+.++++  +.
T Consensus       245 ~sK~~g~~G~r~G~~~~~~~-~~-~~~~~---~~~~--~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  313 (422)
T 3fvs_A          245 AGKTFSATGWKVGWVLGPDH-IM-KHLRT---VHQN--SV----FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAM  313 (422)
T ss_dssp             HHHHHTCGGGCCEEEECCHH-HH-HHHHH---HHHT--TT----CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHH
T ss_pred             chhccCCccceEEEEEeCHH-HH-HHHHH---HHhh--cc----CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence            899985 4577899886432 21 12111   0000  00    11122222333333432      123445555  78


Q ss_pred             hHHHHHHHHHHHhcCC
Q 017569          346 VDHKKLSSFFVIHSSY  361 (369)
Q Consensus       346 ~~~a~~l~~~L~~~g~  361 (369)
                      .++.+++.+.|++.|+
T Consensus       314 ~~~~~~l~~~L~~~g~  329 (422)
T 3fvs_A          314 QRCRDHMIRSLQSVGL  329 (422)
T ss_dssp             HHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            8899999999998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.86  E-value=1.3e-20  Score=182.27  Aligned_cols=273  Identities=10%  Similarity=-0.019  Sum_probs=189.1

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      .++|+.+.+. ++++.+.+++.+++... ...|....+..++++++.+++.+.+|.+.+.  ...+++|+||++|+..++
T Consensus        25 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~--~~~i~~~~g~~~a~~~~~  102 (410)
T 3e2y_A           25 VVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP--NEEILVAVGAYGSLFNSI  102 (410)
T ss_dssp             SEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHHHHH
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC--CCCEEEeCCcHHHHHHHH
Confidence            3566666665 34678899988888653 2344444567899999999999999876421  135899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC----------CccccCHHHHHHHHhhcCc
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----------GYYVMNPVKAVELVDENTI  204 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~----------~~~~~d~~~L~~~i~~~~~  204 (369)
                      .++.++             +++|+++.++|..+...++..|++++.+|++.          .++.+|+++|+++++++++
T Consensus       103 ~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~  169 (410)
T 3e2y_A          103 QGLVDP-------------GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTK  169 (410)
T ss_dssp             HHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEE
T ss_pred             HHhcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCce
Confidence            887432             46899999999999999999999999999862          3478999999999988899


Q ss_pred             EEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~  280 (369)
                      +|+++.|+||||.+   +++++|+++|+++      ++++|+|++|+.+...--.+.....+. ....+.+..+.+|.++
T Consensus       170 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g  243 (410)
T 3e2y_A          170 AIILNTPHNPLGKVYTRQELQVIADLCVKH------DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFS  243 (410)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred             EEEEeCCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence            99999999999999   5799999999999      999999999987543100000001111 1133466667899986


Q ss_pred             -CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH------hcHhhHHHH--HhhHHHHH
Q 017569          281 -VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEVIPSF--CCVDHKKL  351 (369)
Q Consensus       281 -~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~------lg~~G~~~~--~~~~~a~~  351 (369)
                       .+.+.|+++.+++ .. ..+...   ...  ..    ++-+.....++..+|+.      ...+.+.++  +..++.++
T Consensus       244 ~~G~r~G~~~~~~~-~~-~~~~~~---~~~--~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (410)
T 3e2y_A          244 VTGWKLGWSIGPAH-LI-KHLQTV---QQN--SF----YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDR  312 (410)
T ss_dssp             CGGGCCEEEECCHH-HH-HHHHHH---HHT--TT----CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEECHH-HH-HHHHHH---HHh--hc----cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence             5677898886432 21 121110   000  00    11122222333334432      123445555  77889999


Q ss_pred             HHHHHHhcCC
Q 017569          352 SSFFVIHSSY  361 (369)
Q Consensus       352 l~~~L~~~g~  361 (369)
                      +.+.|++.|+
T Consensus       313 l~~~L~~~g~  322 (410)
T 3e2y_A          313 MVRLLNSVGL  322 (410)
T ss_dssp             HHHHHHTTTC
T ss_pred             HHHHHHHCCC
Confidence            9999998764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.86  E-value=3.1e-20  Score=179.63  Aligned_cols=210  Identities=13%  Similarity=0.023  Sum_probs=156.3

Q ss_pred             CCccccccccC---CChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~~---~~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      ..++|..+.+.   .+++.+.+++.++++..   .. |....+..++++++.+++.+.+|.+.+   ...+++|+||++|
T Consensus        35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~---~~~v~~t~g~t~a  110 (407)
T 2zc0_A           35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVS---PENIVITIGGTGA  110 (407)
T ss_dssp             CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCC---GGGEEEESHHHHH
T ss_pred             ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCC---cceEEEecCHHHH
Confidence            44555555443   24577888888777643   23 444457899999999999888885432   1358999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----h--cC
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NT  203 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~--~~  203 (369)
                      +..++.++..+             +++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++    +  ++
T Consensus       111 ~~~~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~  175 (407)
T 2zc0_A          111 LDLLGRVLIDP-------------GDVVITENPSYINTLLAFEQLGAKIEGVPVDND-G-MRVDLLEEKIKELKAKGQKV  175 (407)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHhcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-C-CCHHHHHHHHHhhhcccCCc
Confidence            99999887432             468999999999999999999999999999764 4 99999999998    6  67


Q ss_pred             cEE-EEeeCCCCcccCCCHH---HHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCCCCcEEEEcCccC
Q 017569          204 ICV-AAILGSTLTGEFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKY  278 (369)
Q Consensus       204 ~~v-~~~~~~~~tG~~~~l~---~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Dsi~~~~hK~  278 (369)
                      ++| +++.++||||.+.|++   +|+++|+++      ++++|+|++|+.+.... .+... ..+...+.+.+..+.+|+
T Consensus       176 ~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~  248 (407)
T 2zc0_A          176 KLIYTIPTGQNPMGVTMSMERRKALLEIASKY------DLLIIEDTAYNFMRYEG-GDIVPLKALDNEGRVIVAGTLSKV  248 (407)
T ss_dssp             EEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBSSC-SSCCCGGGGCSSCCEEEEEESTTT
T ss_pred             eEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECCCcccccCC-CCCCChhhcCCCCCEEEEcccccc
Confidence            776 4678999999998876   999999999      99999999998764310 00000 112112334566678999


Q ss_pred             CCCCCCeEEEEEe
Q 017569          279 GLVYAGVGWVVWR  291 (369)
Q Consensus       279 l~~p~g~g~l~~~  291 (369)
                      ++.+..+|+++++
T Consensus       249 ~~~G~r~G~~~~~  261 (407)
T 2zc0_A          249 LGTGFRIGWIIAE  261 (407)
T ss_dssp             TCTTSCCEEEECC
T ss_pred             cCCCcceEEEecC
Confidence            9844468999874

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.85  E-value=1.8e-20  Score=180.47  Aligned_cols=272  Identities=14%  Similarity=0.009  Sum_probs=185.8

Q ss_pred             CCCCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCC-CeEEeCCchHHH
Q 017569           54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTA-VGVGTVGSSEAI  130 (369)
Q Consensus        54 ~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~-~~~~t~Ggt~a~  130 (369)
                      ++..++|+...+.. .++.+.+++.+.+. ....|....+..++++++.+++++.+|.+ .+   .. ..++|+|+++|+
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~~~i~~t~g~~~al  104 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD---ADNEILPVLGSREAL  104 (396)
T ss_dssp             TCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC---TTTSEEEESSHHHHH
T ss_pred             CCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC---CCCeEEEcCCcHHHH
Confidence            44445666655543 45788888888775 33334444567899999999999999965 21   13 589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .+++.++..+        |....+++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|+++.
T Consensus       105 ~~~~~~~~~~--------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~  176 (396)
T 3jtx_A          105 FSFVQTVLNP--------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCS  176 (396)
T ss_dssp             HHHHHHHCCC-----------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEES
T ss_pred             HHHHHHHhCC--------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEEC
Confidence            9998887541        10001268999999999999999999999999999766678999999999999999999999


Q ss_pred             CCCCcccCCCH---HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-------c-CCCCcEEEEcCccC-
Q 017569          211 GSTLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-------R-LPLVKSINVSGHKY-  278 (369)
Q Consensus       211 ~~~~tG~~~~l---~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-------~-~~~~Dsi~~~~hK~-  278 (369)
                      |+||||.+.+.   ++|+++|+++      ++++|+|++|+.+...   .......       . ....+.+..+.+|. 
T Consensus       177 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  247 (396)
T 3jtx_A          177 PNNPSGSVLDLDGWKEVFDLQDKY------GFIIASDECYSEIYFD---GNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS  247 (396)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEECTTTTCCST---TCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccC---CCCCchHHhhhhhcccccCcEEEEecccccc
Confidence            99999999664   4599999999      9999999999875431   1011110       0 13567778889995 


Q ss_pred             CCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHH
Q 017569          279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFV  356 (369)
Q Consensus       279 l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L  356 (369)
                      +..+.+.|+++.. ++.. ..+.....+..         ++-+.....++..+++.  .+.+.+.  +..++.+++.+.|
T Consensus       248 ~~~G~r~G~~~~~-~~~~-~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l  314 (396)
T 3jtx_A          248 NVPGLRSGFVAGD-AELL-KNFLLYRTYHG---------SAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPIL  314 (396)
T ss_dssp             SCGGGCCEEEEEC-HHHH-HHHHHHHHHHT---------CCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccceEEEEeC-HHHH-HHHHHHHhhcc---------cCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788988763 2222 22211000100         12222222222233332  2345555  7778888888888


Q ss_pred             Hhc
Q 017569          357 IHS  359 (369)
Q Consensus       357 ~~~  359 (369)
                      ++.
T Consensus       315 ~~~  317 (396)
T 3jtx_A          315 QQV  317 (396)
T ss_dssp             TTT
T ss_pred             Hhc
Confidence            764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.85  E-value=5.2e-20  Score=179.80  Aligned_cols=247  Identities=10%  Similarity=-0.057  Sum_probs=174.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .++.+.+++.++++.....+.   ...+......++++++++++|.+.       .+++++|++|+..++.++..+    
T Consensus        79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~al~~l~~~----  147 (427)
T 2w8t_A           79 FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG-------AIVFSTGYMANLGIISTLAGK----  147 (427)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------eEEecCcHHHHHHHHHHhcCC----
Confidence            457788888877755211111   122344566677788999998863       678888899998887776331    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCCC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (369)
                               ++.|+++.++|.++..+++..|++++.+|.      +|+++|++++++    ++++|+++.++|++|.+.|
T Consensus       148 ---------gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~  212 (427)
T 2w8t_A          148 ---------GEYVILDADSHASIYDGCQQGNAEIVRFRH------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP  212 (427)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHHSCSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC
T ss_pred             ---------CCEEEECCcccHHHHHHHHHcCCeeEEeCC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC
Confidence                     468999999999999999999998887763      489999999987    7899999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--ccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      +++|.++|+++      ++++|+|++|+.+..+.......  +++ ..++|.+..++||+++ +.| |+++.++ +.. +
T Consensus       213 l~~l~~l~~~~------g~~li~Dea~~~~~~~~~g~~~~~~~~~-~~~~di~~~s~sK~~g-~~g-G~v~~~~-~l~-~  281 (427)
T 2w8t_A          213 LKEMVAVAKKH------GAMVLVDEAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVG-TVG-GFVVSNH-PKF-E  281 (427)
T ss_dssp             HHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHTTC-TTCCSEEEEESSSTTC-SCC-EEEEECC-TTG-G
T ss_pred             HHHHHHHHHHc------CCEEEEECCccccccCCCCCchHhhcCC-CcCCcEEEecchhhhc-cCC-CEEEeCH-HHH-H
Confidence            99999999999      99999999999866521000000  122 2368999999999986 555 8887753 333 2


Q ss_pred             ccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          299 ELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       299 ~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+... ..|..        .++.+....+++..+|+.+..  +.++  +..++++++++.|++.|+
T Consensus       282 ~l~~~~~~~~~--------~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~  337 (427)
T 2w8t_A          282 AVRLACRPYIF--------TASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMGF  337 (427)
T ss_dssp             GGGGTCHHHHS--------SCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcccccc--------cCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCC
Confidence            32211 11211        123333334555566666542  3333  888999999999998753

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.85  E-value=1.2e-20  Score=179.86  Aligned_cols=252  Identities=13%  Similarity=0.007  Sum_probs=175.8

Q ss_pred             cCCChHHHHHHHHHHhccCCC-------CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCC-eEEeCCchHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV-GVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~Ggt~a~~~al~~  136 (369)
                      +.++++.+.+++.+++.....       ....++...++.+++++++++++|++.+    .. .++|+||++|+..++.+
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~~i~~t~g~t~a~~~~~~~   87 (362)
T 2c0r_A           12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG----YKVLFIQGGASTQFAMIPMN   87 (362)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS----EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCC----cEEEEECCCchHHHHHHHHh
Confidence            556678889998888753211       0112455677888999999999999741    12 46778999999998888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccC---CccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEE---GYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~---~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      +.++             +++|+++.+.|++  +...++..| +++.++++.   .+..+|.++++  ++++|++|+++++
T Consensus        88 l~~~-------------gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~  151 (362)
T 2c0r_A           88 FLKE-------------GQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSN  151 (362)
T ss_dssp             HCCT-------------TCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESE
T ss_pred             cCCC-------------CCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCC
Confidence            7432             4678877666655  345677789 999999862   22345766654  6778999999999


Q ss_pred             CCCcccC-CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          212 STLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       212 ~~~tG~~-~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      +||||.+ .|+++|      +      ++++|+|++|+.+..+       .++.  ..|.++.++|||+ +|.|+|++++
T Consensus       152 ~n~tG~~~~~l~~i------~------~~~vivD~a~~~~~~~-------~~~~--~~d~~~~s~~K~~-g~~G~G~l~~  209 (362)
T 2c0r_A          152 ETIEGAQFKAFPDT------G------SVPLIGDMSSDILSRP-------FDLN--QFGLVYAGAQKNL-GPSGVTVVIV  209 (362)
T ss_dssp             ETTTTEECSSCCCC------T------TSCEEEECTTTTTSSC-------CCGG--GCSEEEEETTTTT-CCSSCEEEEE
T ss_pred             cCccceeccccccc------C------CCEEEEEChhhccCCc-------cchh--HCcEEEEeccccc-cCcCcEEEEE
Confidence            9999995 888887      7      9999999999865432       2222  2489999999999 5888999998


Q ss_pred             eCCCCcccccccc-cCccCC--CCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          291 RTKDDLPDELVFH-INYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       291 ~~~~~~~~~~~~~-~~y~~~--~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +++ .. ..+... +.+...  ........+|.+.....++..+|+.+..+ |++++  +..++++++++.|++.|
T Consensus       210 ~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  283 (362)
T 2c0r_A          210 RED-LV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG  283 (362)
T ss_dssp             EGG-GS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             cHH-HH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            753 22 121110 111100  00000122566666667778888877665 77777  89999999999999988

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.85  E-value=2.1e-20  Score=178.34  Aligned_cols=258  Identities=14%  Similarity=0.124  Sum_probs=174.1

Q ss_pred             ccccccccC-CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      ++|....+. ++++.+.+++.+.+.. ....|. .++..+++    +++++++|.+.    ...+++|+||++|+.+++.
T Consensus        33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~l~----~~la~~~g~~~----~~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           33 VKLDAMENPYRLPPALRSELAARLGEVALNRYP-VPSSEALR----AKLKEVMQVPA----GMEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             EECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSC-CCCHHHHH----HHHHHHHTCCT----TCEEEEEEHHHHHHHHHHH
T ss_pred             eEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCcHHHHH----HHHHHHhCCCC----cceEEEcCCHHHHHHHHHH
Confidence            344444433 3457888888887764 223332 23444554    45888889831    1358999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (369)
                      ++..+             +++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||
T Consensus       104 ~~~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~np  169 (367)
T 3euc_A          104 AAARP-------------GAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRAD-FTLDRGAMLAAMAEHQPAIVYLAYPNNP  169 (367)
T ss_dssp             HTCCT-------------TCEEEEEESCSCCSCHHHHTTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred             HHcCC-------------CCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHHHhhccCCCEEEEcCCCCC
Confidence            76432             468999999999999999999999999999874 89999999999998 8999999999999


Q ss_pred             cccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       215 tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      ||.+.+   +++|+++|++++.    |+++|+|++|+.+..    ......+.....+.+..+.+|++..+.+.|+++.+
T Consensus       170 tG~~~~~~~l~~i~~~~~~~~~----~~~li~De~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~  241 (367)
T 3euc_A          170 TGNLFDAADMEAIVRAAQGSVC----RSLVVVDEAYQPFAQ----ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGD  241 (367)
T ss_dssp             TCCCCCHHHHHHHHHHTBTTSC----BCEEEEECTTCCSSS----CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHhhhhcCC----CcEEEEeCcchhhcc----cchHHHHhhCCCEEEEecchhhcccccCceeeeeC
Confidence            999954   5566666665410    489999999986432    11111222334557777899996666778998874


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc-HhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      + +.. ..+...    .   ..    ++.+   .+.++++...+. .+.+.++  +..++.+++.+.|++.+.+
T Consensus       242 ~-~~~-~~~~~~----~---~~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~  299 (367)
T 3euc_A          242 P-QWL-EQLDKV----R---PP----YNVN---VLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGV  299 (367)
T ss_dssp             H-HHH-HHHGGG----C---CS----SCCC---HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             H-HHH-HHHHHh----C---CC----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            2 222 121110    0   01    1222   233333333332 3445555  8889999999999987433

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.85  E-value=1.7e-20  Score=181.54  Aligned_cols=246  Identities=14%  Similarity=0.026  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (369)
                      +.+.+++.+.++.+  .+...+...+++    +.+++++|.+.       .+++++|++|+..++.++ ..         
T Consensus        44 ~~v~~a~~~~~~~~--~y~~~~~~~~l~----~~la~~~~~~~-------~v~~~~Gt~a~~~~l~~~~~~---------  101 (399)
T 2oga_A           44 AETDAAIARVLDSG--RYLLGPELEGFE----AEFAAYCETDH-------AVGVNSGMDALQLALRGLGIG---------  101 (399)
T ss_dssp             HHHHHHHHHHHHHT--CCSSSHHHHHHH----HHHHHHTTSSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHhcC--CCCCchhHHHHH----HHHHHHHCCCe-------EEEecCHHHHHHHHHHHhCCC---------
Confidence            67788888777553  222334444454    45888888763       788899999999988876 22         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL  228 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~  228 (369)
                          .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+   ++||+|.+.|+++|.++|
T Consensus       102 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~  174 (399)
T 2oga_A          102 ----PGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELA  174 (399)
T ss_dssp             ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             ----CcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHH
Confidence                1468999999999999999999999999999865589999999999988887776   578999999999999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeCCCCcccccccccCc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVFHINY  306 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  306 (369)
                      +++      ++++|+|++|+.+..  ....   .+. ...|.++.++|  |++++|...|+++.++++.. ..+......
T Consensus       175 ~~~------~~~li~Dea~~~g~~--~~~~---~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~-~~l~~~~~~  241 (399)
T 2oga_A          175 DRH------GLHIVEDAAQAHGAR--YRGR---RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELA-ERLRMLRNY  241 (399)
T ss_dssp             HHH------TCEECEECTTCTTCE--ETTE---ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHH-HHHHHHHBT
T ss_pred             HHc------CCEEEEECcccccCc--cCCe---ecc-cccCEEEEeCCCCccCCcCCceEEEEeCCHHHH-HHHHHHHhc
Confidence            999      999999999986543  1111   111 12588888885  99865445677776544332 111110000


Q ss_pred             cCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       307 ~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ...........+.......+.+++++..+.  .+.++  +..++++++++.|++.
T Consensus       242 g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~  294 (399)
T 2oga_A          242 GSRQKYSHETKGTNSRLDEMQAAVLRIRLA--HLDSWNGRRSALAAEYLSGLAGL  294 (399)
T ss_dssp             TCSSTTCCCSCCCBCCCCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CccccccccccccCCCcCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccC
Confidence            000000000001111112344444433331  23333  7778899999999886

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.85  E-value=2.6e-20  Score=180.25  Aligned_cols=217  Identities=12%  Similarity=0.023  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH--
Q 017569           94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA--  171 (369)
Q Consensus        94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~--  171 (369)
                      .....++++++++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+  
T Consensus        63 ~~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~  122 (398)
T 2rfv_A           63 NPTTDALEKKLAVLERGEA-------GLATASGISAITTTLLTLCQQ-------------GDHIVSASAIYGCTHAFLSH  122 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSSCHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCcccHHHHHHH
Confidence            4455677788999999863       677888899999998887432             468999999999887766  


Q ss_pred             --hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          172 --RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       172 --~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                        +..|++++.+|++      |+++|++++++++++|++++++||+|.+.|+++|+++|+++      ++++|+|++|+.
T Consensus       123 ~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~  190 (398)
T 2rfv_A          123 SMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDNTFMS  190 (398)
T ss_dssp             HHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred             HHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence              7779999888864      78999999999999999999999999999999999999999      999999999986


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHH
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~  327 (369)
                      +..+  .   ...   .++|.++.++||++++|.+  +|+++.+++ .+...+.. .....   .    .++-   ..+.
T Consensus       191 ~~~~--~---~~~---~~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~~-~~~~~---~----~~~~---~~~~  250 (398)
T 2rfv_A          191 PYCQ--Q---PLQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFV-GLKDI---T----GGCM---SPFN  250 (398)
T ss_dssp             TTTC--C---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHT-HHHHT---T----CCCC---CHHH
T ss_pred             cccC--C---chh---hCCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHHH-HHHhC---C----CCCC---CHHH
Confidence            5431  1   112   2689999999999987766  588887642 22111110 00000   0    0111   2455


Q ss_pred             HHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCc
Q 017569          328 QYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       328 ~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~  363 (369)
                      +|+++..+.. .-..+ +..++++++++.|++.+.+.
T Consensus       251 ~~~~~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~v~  286 (398)
T 2rfv_A          251 AWLTLRGVKT-LGIRMERHCENALKIARFLEGHPSIT  286 (398)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHcCCCee
Confidence            5666665532 12223 67788999999998876443

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.85  E-value=8.9e-20  Score=173.70  Aligned_cols=258  Identities=17%  Similarity=0.087  Sum_probs=175.2

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+...+. ++++.+.+++.+.+.....+  ..++..+    +++++++++|+++     ...++|+||++|+..++.
T Consensus        34 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y--~~~~~~~----lr~~la~~~~~~~-----~~v~~~~g~t~a~~~~~~  102 (363)
T 3ffh_A           34 ITKLSSNENPLGTSKKVAAIQANSSVETEIY--PDGWASS----LRKEVADFYQLEE-----EELIFTAGVDELIELLTR  102 (363)
T ss_dssp             CEECSSCSCTTCCCHHHHHHHHTCBSCCCBC------CHH----HHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHH
T ss_pred             eEEccCCCCCCCCCHHHHHHHHHHHHHhhcC--CCcchHH----HHHHHHHHhCCCh-----hhEEEeCCHHHHHHHHHH
Confidence            3455554433 34678888888776432222  2234444    4455888888765     358999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      ++..+             +++|+++.++|.++...++..|++++.+|++++ +.+|+++|++++++++++|++++++|||
T Consensus       103 ~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~p~npt  168 (363)
T 3ffh_A          103 VLLDT-------------TTNTVMATPTFVQYRQNALIEGAEVREIPLLQD-GEHDLEGMLNAIDEKTTIVWICNPNNPT  168 (363)
T ss_dssp             HHCST-------------TCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT-SCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHccC-------------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC-CCcCHHHHHHhcccCCCEEEEeCCCCCc
Confidence            87432             468999999999999999999999999999874 8999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKD  294 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~  294 (369)
                      |.+.|+++|.++++.+.+    ++++|+|++|+.+..+ -.+..........-+.+..+.+|+++ .+.+.|+++++ ++
T Consensus       169 G~~~~~~~l~~l~~~~~~----~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~  242 (363)
T 3ffh_A          169 GNYIELADIQAFLDRVPS----DVLVVLDEAYIEYVTP-QPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KE  242 (363)
T ss_dssp             CCCCCHHHHHHHHTTSCT----TSEEEEECTTGGGCSS-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HH
T ss_pred             CCCcCHHHHHHHHHhCCC----CcEEEEeCchHhhcCc-cccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HH
Confidence            999999999999997632    8999999999965431 00000011112233456667889985 44556999873 22


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh-cHhhHHHH--HhhHHHHHHHHHHHh-cC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-GFEVIPSF--CCVDHKKLSSFFVIH-SS  360 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l-g~~G~~~~--~~~~~a~~l~~~L~~-~g  360 (369)
                      .. +.+...    .   ..    ++-+   .+.++++...+ ..+.++++  +..++.+++.+.|++ .|
T Consensus       243 ~~-~~l~~~----~---~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g  297 (363)
T 3ffh_A          243 II-RQLNIV----R---PP----FNTT---SIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEK  297 (363)
T ss_dssp             HH-HHHHHT----C---CS----CCCB---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HH-HHHHHh----C---CC----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            22 221110    0   01    1222   33333333333 22455555  788899999999988 44

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.85  E-value=2.5e-20  Score=193.88  Aligned_cols=226  Identities=14%  Similarity=0.008  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      .+.++.+++++|.+.      ...+++|+++||..++.++..+             ++.|+++.+.|.++..++...|+.
T Consensus       208 ~~~ee~la~l~G~d~------~i~~~~Gtt~a~~~~i~al~~~-------------GD~Vlv~~~~h~s~~~~~~~~G~~  268 (755)
T 2vyc_A          208 GESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLMLTGAK  268 (755)
T ss_dssp             HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHhCCCc------eEEECCcHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHHHHHHcCCE
Confidence            456677999999874      2567788889999988887542             479999999999999999999999


Q ss_pred             eEEEeccCCc----ccc-----CHHHHHHHHhh--cCc--------EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC
Q 017569          178 LKEVKLEEGY----YVM-----NPVKAVELVDE--NTI--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       178 v~~v~~~~~~----~~~-----d~~~L~~~i~~--~~~--------~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      +++++++.++    +.+     |+++|++++++  +++        ++++++| |++|.+.|+++|+++|+++      +
T Consensus       269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~------~  341 (755)
T 2vyc_A          269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT------S  341 (755)
T ss_dssp             EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT------C
T ss_pred             EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc------C
Confidence            9999886432    235     99999999976  343        8888887 6899999999999999999      9


Q ss_pred             ceEEeecccccccccccCCCc--cccccCCC--CcE------EEEcCccCCCCCCCeEEEEEeCCC-Ccc-cccccccCc
Q 017569          239 TPIHVDAASGGFIAPFLYPDL--EWDFRLPL--VKS------INVSGHKYGLVYAGVGWVVWRTKD-DLP-DELVFHINY  306 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~--~Ds------i~~~~hK~l~~p~g~g~l~~~~~~-~~~-~~~~~~~~y  306 (369)
                      +++|+|+||+++..  +.+..  ...  ..+  +|.      ++.|+||++.+|.++|++++++.. .+. ..+......
T Consensus       342 ~~livDeA~~~~~~--~~~~~~~~~~--~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~  417 (755)
T 2vyc_A          342 DRLHFDEAWYGYAR--FNPIYADHYA--MRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMM  417 (755)
T ss_dssp             SEEEEECTTCTTGG--GCGGGTTSSS--SCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHH
T ss_pred             CEEEEECcCchhcc--cCcccCCcch--hcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHH
Confidence            99999999986432  12211  011  134  676      899999999999889999988751 111 111111111


Q ss_pred             cCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       307 ~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..        .+|.+....+++.++++.+..+|..++  +..+++++++++|++++.
T Consensus       418 ~~--------s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          418 HA--------TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             TS--------CSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hC--------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            11        135555667788888888877744444  999999999999998643

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.85  E-value=4.9e-20  Score=176.83  Aligned_cols=248  Identities=11%  Similarity=-0.060  Sum_probs=167.2

Q ss_pred             ChHHHHHHHHHHhccCCC-C-CCCCc-chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYV-D-MDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~-~-~~~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      +++.+.+++.+.++.... . ...++ +......++++.+++++|.+.       .+++++|++|+..++.++.++    
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~~~~~~~~----  122 (384)
T 1bs0_A           54 HHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAANQAVIAAMMAK----  122 (384)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC----
Confidence            457788888877754111 1 01111 223444566677888888863       677777799999988776331    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc---CcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~---~~~v~~~~~~~~tG~~~~l  221 (369)
                               ++.|+++.++|.++..+++..|++++.+|.      +|+++|++++++.   +++|++++++||+|.+.|+
T Consensus       123 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l  187 (384)
T 1bs0_A          123 ---------EDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPL  187 (384)
T ss_dssp             ---------TCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCH
T ss_pred             ---------CcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCH
Confidence                     468999999999999999999999988874      3789999999763   7888899999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|.++|+++      ++++|+|++|+.+..+.........+. ...|.++.++||+++ |.| |+++.++ +.. +.+.
T Consensus       188 ~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~-~~l~  256 (384)
T 1bs0_A          188 AEIQQVTQQH------NGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AAVLCSS-TVA-DYLL  256 (384)
T ss_dssp             HHHHHHHHHT------TCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EEEEECH-HHH-HHHH
T ss_pred             HHHHHHHHHc------CcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cEEEeCH-HHH-HHHH
Confidence            9999999999      999999999976543100000011111 357888889999986 666 8888753 222 2221


Q ss_pred             cc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          302 FH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       302 ~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .. ..|...        ++.+.....++..+++.+....++++  +..++++++.+.|++.|
T Consensus       257 ~~~~~~~~~--------~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  310 (384)
T 1bs0_A          257 QFARHLIYS--------TSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP  310 (384)
T ss_dssp             HHCHHHHSS--------BCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HhchhhhcC--------CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            11 112111        12223333444556665532134444  88899999999999876

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.85  E-value=2.2e-20  Score=180.42  Aligned_cols=278  Identities=14%  Similarity=0.044  Sum_probs=182.4

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhcc-CCCCCCC------CcchHHHHHHHHHHHHHHhCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINK-NYVDMDE------YPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~-n~~~~~~------~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      .++++.+.+...... ..+++....+.. ++.+.+++.+.+.. ....+..      .+....+|+.+++++++++|.++
T Consensus         9 ~~i~~~~~~~~~~~~-~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~   86 (407)
T 2dkj_A            9 EALFELIALEEKRQR-EGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW   86 (407)
T ss_dssp             HHHHHHHHHHHHHHH-TSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHhh-cceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence            445555555443321 223333333322 67888888888754 2211111      11223566667789999999874


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH---HHHHhhhcceeEEEec--cCCc
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---EKFARYFEVELKEVKL--EEGY  187 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~---~~~~~~~G~~v~~v~~--~~~~  187 (369)
                            ..+++++|++|+..++.++..+             +++|+++.++|.++   ..+++..|..++.+++  ++++
T Consensus        87 ------~~i~~~sGt~a~~~~~~~~~~~-------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  147 (407)
T 2dkj_A           87 ------ANVQPHSGSQANMAVYMALMEP-------------GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDT  147 (407)
T ss_dssp             ------EECCCSSHHHHHHHHHHHHCCT-------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTT
T ss_pred             ------ceEEecchHHHHHHHHHHhcCC-------------CCEEEEecccccCccchHHHHHhcCceEEEEecCCCccc
Confidence                  1245556678999888887431             46899999999887   4566677875555555  4335


Q ss_pred             cccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCC
Q 017569          188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP  266 (369)
Q Consensus       188 ~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~  266 (369)
                      +.+|+++|++++++ ++++|+++.|+|+  .+.|+++|.++|+++      ++++|+|++|+.+..+  .+.....  ..
T Consensus       148 ~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~--~~~~~~~--~~  215 (407)
T 2dkj_A          148 ELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEV------GAYLVVDMAHFAGLVA--AGLHPNP--LP  215 (407)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTCSCCC--TT
T ss_pred             CccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHc------CCEEEEEccccccccc--cCccCCc--cc
Confidence            89999999999985 8999988788876  778999999999999      9999999999874431  1111111  12


Q ss_pred             CCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--
Q 017569          267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--  343 (369)
Q Consensus       267 ~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--  343 (369)
                      .+|.++.++||++.++.+ |++++++++.. ..+.... .+.         .++.+.....++.+++..+..++++++  
T Consensus       216 ~~di~~~s~sK~l~g~~~-G~~~~~~~~~~-~~l~~~~~~~~---------~~~~~~~~~~a~~~al~~~~~~~~~~~~~  284 (407)
T 2dkj_A          216 YAHVVTSTTHKTLRGPRG-GLILSNDPELG-KRIDKLIFPGI---------QGGPLEHVIAGKAVAFFEALQPEFKEYSR  284 (407)
T ss_dssp             TCSEEEEESSGGGCCCSC-EEEEESCHHHH-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             cccEEEEeccccCCCCCc-eEEEECCHHHH-HHHHhhhcccc---------cCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            479999999999987776 89988643332 2221110 110         123333333455667776655677776  


Q ss_pred             HhhHHHHHHHHHHHhcCC
Q 017569          344 CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       344 ~~~~~a~~l~~~L~~~g~  361 (369)
                      +..++++++.+.|++.|+
T Consensus       285 ~~~~~~~~l~~~L~~~g~  302 (407)
T 2dkj_A          285 LVVENAKRLAEELARRGY  302 (407)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            889999999999998753

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.84  E-value=1.7e-20  Score=182.55  Aligned_cols=191  Identities=12%  Similarity=0.101  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHH
Q 017569           69 EPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRK  146 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~  146 (369)
                      ++.+.+++.++++..... +....+..++.+++++.+++++|.+.       .+++++|++|+.+++.++ ..       
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-------~i~~~~gt~al~~~~~~~~~~-------   80 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY-------CVPTTSGSTALMLALEALGIG-------   80 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCC-------
T ss_pred             CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC-------
Confidence            577888888887654322 33344555666777888999999873       688889999999998886 22       


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~  226 (369)
                            .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|++   +|++|.+.|+++|.+
T Consensus        81 ------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~  151 (418)
T 2c81_A           81 ------EGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINE  151 (418)
T ss_dssp             ------TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHH
T ss_pred             ------CcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHH
Confidence                  14689999999999999999999999999998655899999999999888887764   468999999999999


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      +|+++      ++++|+|++|+.+..  .... ... ....++++++++||+++++ ..|+++.+++
T Consensus       152 ~~~~~------~~~li~D~a~~~~~~--~~~~-~~~-~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~  207 (418)
T 2c81_A          152 IAQEH------NLFVIEDCAQSHGSV--WNNQ-RAG-TIGDIGAFSCQQGKVLTAG-EGGIIVTKNP  207 (418)
T ss_dssp             HHHHT------TCEEEEECTTCTTCE--ETTE-ETT-SSSSEEEEECCTTSSSCSS-SCEEEEESCH
T ss_pred             HHHHC------CCEEEEECcccccCc--cCCE-ecc-cccceEEEeccCCcccCCC-CeEEEEECCH
Confidence            99999      999999999987652  1111 110 1223667777779999764 6677776543

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.84  E-value=7.1e-20  Score=177.42  Aligned_cols=252  Identities=11%  Similarity=-0.006  Sum_probs=164.7

Q ss_pred             ChHHHHHHHHHHhccCC-------CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNY-------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~-------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.+.+++.+.+....       ..+...+...++++.+++++++++|.+++     ...+ ++|++|+..++.++.++
T Consensus        37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-----~i~~-~sGt~a~~~~~~~~~~~  110 (417)
T 3n0l_A           37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-----NVQP-NSGSQANQGVYAALINP  110 (417)
T ss_dssp             CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-----ECCC-SSHHHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-----ceEe-ccHHHHHHHHHHHhcCC
Confidence            36778888887773321       11122245578888899999999999751     2344 45589999998887442


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHH---HHhhhcce--eEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCC
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL  214 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~---~~~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~  214 (369)
                                   +++|+++.++|.++..   .+...|..  ++.++++ +++.+|+++|+++++ +++++|+++.++| 
T Consensus       111 -------------gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~-  175 (417)
T 3n0l_A          111 -------------GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKEKPKLIVCGASAY-  175 (417)
T ss_dssp             -------------TCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHHCCSEEEECCSSC-
T ss_pred             -------------CCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhcCCeEEEECCccc-
Confidence                         4799999999977554   33444444  4555566 458899999999998 6899998877774 


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                       |.+.|+++|.++|+++      ++++|+|+++..+..  ........  ...+|.++.++||++.+|.+ |+++.++++
T Consensus       176 -G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~~~-G~~~~~~~~  243 (417)
T 3n0l_A          176 -ARVIDFAKFREIADEI------GAYLFADIAHIAGLV--VAGEHPSP--FPYAHVVSSTTHKTLRGPRG-GIIMTNDEE  243 (417)
T ss_dssp             -CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCC--TTTCSEEEEESSTTTCSCSC-EEEEESCHH
T ss_pred             -CccCCHHHHHHHHHHc------CCEEEEECccchhhh--hcccCCCc--cccceEEEeeCccccCCCCe-eEEEECCHH
Confidence             8999999999999999      999999999754433  11111111  23679999999999976664 888876433


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .. ..+.. ..+.       ...++.......++..++.....+++.++  +..++++++.+.|++.|+
T Consensus       244 ~~-~~~~~-~~~~-------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  303 (417)
T 3n0l_A          244 LA-KKINS-AIFP-------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKF  303 (417)
T ss_dssp             HH-HHHHH-HHTT-------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HH-HHHhh-hhCC-------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            32 12111 0000       01133334445566667776555676666  888999999999998664

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.84  E-value=5.8e-20  Score=178.91  Aligned_cols=214  Identities=12%  Similarity=-0.009  Sum_probs=154.8

Q ss_pred             Cccccccc---cC---CChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEEeCCch
Q 017569           57 RLNLASFV---TT---WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVGTVGSS  127 (369)
Q Consensus        57 ~~~l~~~~---~~---~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~t~Ggt  127 (369)
                      .++|+.+.   +.   ++++.+.+++.++++.+ ...|....+..++++++.+++....+.  +++   ...+++|+||+
T Consensus        51 ~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~---~~~i~~t~G~t  127 (420)
T 4f4e_A           51 KVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAG---RVVTAQALGGT  127 (420)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT---CEEEEEEEHHH
T ss_pred             cEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccC---ceEEEECCccH
Confidence            35666552   22   33478889888888663 344555668889999888777654442  221   01489999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHh---hcC
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---ENT  203 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~---~~~  203 (369)
                      +|+..++..+..-           ..+++|+++.++|..+...++..|++++.+|+ +++++.+|+++|+++++   +++
T Consensus       128 ~al~~~~~~~~~~-----------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  196 (420)
T 4f4e_A          128 GALKIGADFLRTL-----------NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGT  196 (420)
T ss_dssp             HHHHHHHHHHHHH-----------CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHHh-----------CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCC
Confidence            9999885433211           01468999999999999999999999999998 44458999999999998   578


Q ss_pred             cEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cc-cCCCCcEEEEcCccC
Q 017569          204 ICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF-RLPLVKSINVSGHKY  278 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~-~~~~~Dsi~~~~hK~  278 (369)
                      ++++++.++||||.+   +++++|+++|+++      ++++++|++|+++....-.+.... .+ .....+.+..+.+|.
T Consensus       197 ~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  270 (420)
T 4f4e_A          197 IVVLHACCHNPTGVDLNDAQWAQVVEVVKAR------RLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKS  270 (420)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTT
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCcc
Confidence            899999999999998   4577999999999      999999999987654100000000 11 123445667789999


Q ss_pred             CC-CCCCeEEEEE
Q 017569          279 GL-VYAGVGWVVW  290 (369)
Q Consensus       279 l~-~p~g~g~l~~  290 (369)
                      ++ .+++.|++++
T Consensus       271 ~~~~G~RiG~~~~  283 (420)
T 4f4e_A          271 FSLYGERVGALSI  283 (420)
T ss_dssp             TTCGGGCEEEEEE
T ss_pred             CcCcCCCcEEEEE
Confidence            86 4667899875

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.84  E-value=3.9e-20  Score=180.43  Aligned_cols=262  Identities=14%  Similarity=0.049  Sum_probs=180.2

Q ss_pred             ccccccccC---CChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCCchHHH
Q 017569           58 LNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        58 ~~l~~~~~~---~~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~  130 (369)
                      ++|+.+.+.   .+++.+.+++.++++.+   ...|....+..++++++.+++.+.+|.+ .+   ...+++|+||++|+
T Consensus        46 idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~~v~~t~G~~~al  122 (425)
T 1vp4_A           46 ISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD---EDNLIFTVGSQQAL  122 (425)
T ss_dssp             EECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC---GGGEEEEEHHHHHH
T ss_pred             eeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC---cccEEEeccHHHHH
Confidence            455554443   24577888888877653   2444444578899999999998877854 21   13589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh--------c
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------N  202 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--------~  202 (369)
                      ..++.++..+             +++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++        +
T Consensus       123 ~~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~~  187 (425)
T 1vp4_A          123 DLIGKLFLDD-------------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G-MDLNVLERKLSEFDKNGKIKQ  187 (425)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHhCCC-------------CCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHHhhhhcccCCC
Confidence            9988876432             468999999999999999999999999999864 4 999999999986        6


Q ss_pred             CcEE-EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC-cc-ccccCCCCcEEEEcCc
Q 017569          203 TICV-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LE-WDFRLPLVKSINVSGH  276 (369)
Q Consensus       203 ~~~v-~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~~~~~~~~Dsi~~~~h  276 (369)
                      +++| +++.++||||.+.+   +++|+++|+++      ++++++|++|+.+...  ... .. ..+.....+.+..+++
T Consensus       188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~i~~~s~s  259 (425)
T 1vp4_A          188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRYE--GETVDPIFKIGGPERVVLLNTFS  259 (425)
T ss_dssp             EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBCS--SCCCCCHHHHHCTTTEEEEEEST
T ss_pred             ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEECCCccccCC--CCCCcCHHHhCCCCCEEEEeccc
Confidence            7887 57899999999865   67899999999      9999999999875431  110 01 1112224567778899


Q ss_pred             cCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH----hhHHHH--HhhHHHH
Q 017569          277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF----EVIPSF--CCVDHKK  350 (369)
Q Consensus       277 K~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~----~G~~~~--~~~~~a~  350 (369)
                      |+++.+.++|++++++ +.. ..+......       .+  ++.+   .+.++++...+..    +.++++  +..++.+
T Consensus       260 K~~~~G~r~G~~~~~~-~~~-~~l~~~~~~-------~~--~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (425)
T 1vp4_A          260 KVLAPGLRIGMVAGSK-EFI-RKIVQAKQS-------AD--LCSP---AITHRLAARYLERYDLLEQLKPTIELYRRKRT  325 (425)
T ss_dssp             TTTCGGGCEEEEECCH-HHH-HHHHHHHHH-------HH--SSCC---HHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHH
T ss_pred             cccccccceEEEeeCH-HHH-HHHHHHhhh-------hc--CCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            9997445679998753 222 222110000       00  1111   3334444444422    334444  6678889


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      ++.+.|++.
T Consensus       326 ~l~~~L~~~  334 (425)
T 1vp4_A          326 VMLNALEEY  334 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999874

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.84  E-value=2.7e-20  Score=180.70  Aligned_cols=212  Identities=13%  Similarity=0.009  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhh
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY  173 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~  173 (369)
                      +++++.+++++|.+.       .++++||++|+..++.++.++             +++|+++.+.|.++..    .++.
T Consensus        65 ~~l~~~ia~~~g~~~-------~i~~~~g~~ai~~~~~~l~~~-------------gd~Vl~~~~~y~~~~~~~~~~~~~  124 (404)
T 1e5e_A           65 SNLEGKIAFLEKTEA-------CVATSSGMGAIAATVLTILKA-------------GDHLISDECLYGCTHALFEHALTK  124 (404)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHhCC-------------CCEEEEeCCCchhHHHHHHHHHHH
Confidence            355566888888863       788889999999988876432             4689999999999887    6778


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH-hhhccCCCceEEeecccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~-~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      .|++++.+|++      |+++|+++++++|++|++++|+||+|.+.|+++|+++|++ +      ++++++|++|+.+..
T Consensus       125 ~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~------~~~li~De~~~~~~~  192 (404)
T 1e5e_A          125 FGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIADNTFCSPMI  192 (404)
T ss_dssp             TTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEECTTTCTTT
T ss_pred             cCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhc------CCEEEEECCCchhhh
Confidence            89999988875      6789999999999999999999999999999999999999 9      999999999997653


Q ss_pred             cccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       253 ~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                        ..   +..   .++|.++.+++|++++|.+  +|+++.+++ .+...+.......      ++  +   ....+.+|+
T Consensus       193 --~~---~~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~------~g--~---~~~~~~~~~  252 (404)
T 1e5e_A          193 --TN---PVD---FGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDI------TG--S---VISPHDAWL  252 (404)
T ss_dssp             --CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCC------CC--C---CCCHHHHHH
T ss_pred             --CC---ccc---cCCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhC------CC--C---CCCHHHHHH
Confidence              11   122   2689999999999988766  598887643 2211221111111      00  0   112456677


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ++..+..  +..+  +..++++++.+.|++.+.++
T Consensus       253 ~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~v~  285 (404)
T 1e5e_A          253 ITRGLST--LNIRMKAESENAMKVAEYLKSHPAVE  285 (404)
T ss_dssp             HHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             HHHhHhH--HHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            7766643  3323  67889999999998887443

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.84  E-value=8.8e-20  Score=177.87  Aligned_cols=254  Identities=13%  Similarity=0.033  Sum_probs=169.1

Q ss_pred             ccccccCCC-hHHHHHHHHHHhccCCCCCCC-CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           60 LASFVTTWM-EPECDKLVMASINKNYVDMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        60 l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      |..+.+... ++.+.+++.++++.+.  |.. .++..+++++    +++++|.+.       +++|+||++|+.+++.++
T Consensus        21 l~~~~p~~~~p~~~~~a~~~~~~~~~--y~~~~~~~~~l~~~----la~~~~~~~-------v~~~~ggt~al~~~l~~l   87 (424)
T 2po3_A           21 LLVGRPNRIDRARLYERLDRALDSQW--LSNGGPLVREFEER----VAGLAGVRH-------AVATCNATAGLQLLAHAA   87 (424)
T ss_dssp             EETTCCCCCCHHHHHHHHHHHHHHTC--CSSSCHHHHHHHHH----HHHHHTSSE-------EEEESCHHHHHHHHHHHH
T ss_pred             ccccCCCCCChHHHHHHHHHHHhcCC--cccCCHHHHHHHHH----HHHHhCCCe-------EEEeCCHHHHHHHHHHHc
Confidence            444444433 4677888888876542  333 4555555555    777778753       899999999999998886


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      . .             +++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+++   +++|.
T Consensus        88 ~-~-------------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~  150 (424)
T 2po3_A           88 G-L-------------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGR  150 (424)
T ss_dssp             T-C-------------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred             C-C-------------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence            3 1             36899999999999999999999999999986558999999999998888888865   48999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeCCCC
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~~~~  295 (369)
                      +.++++|.++|+++      ++++|+|++|+.+..  ...   ..+. ...|.++.+++  |++.+ ...|+++.++++.
T Consensus       151 ~~~l~~i~~la~~~------~~~li~Dea~~~g~~--~~~---~~~~-~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l  217 (424)
T 2po3_A          151 PCAADQLRKVADEH------GLRLYFDAAHALGCA--VDG---RPAG-SLGDAEVFSFHATKAVNA-FEGGAVVTDDADL  217 (424)
T ss_dssp             CCCHHHHHHHHHHT------TCEEEEECTTCTTCE--ETT---EETT-SSSSEEEEECCTTSSSCC-SSCEEEEESCHHH
T ss_pred             cCCHHHHHHHHHHc------CCEEEEECccccCCe--ECC---eecc-cccCEEEEeCCCCCCccC-CCCeEEEeCCHHH
Confidence            99999999999999      999999999984332  111   0111 12366666665  98755 6678887754333


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      . ..+.....+...........+.......+..+.++..  .++++++  +..++++++++.|++.
T Consensus       218 ~-~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~  280 (424)
T 2po3_A          218 A-ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADL  280 (424)
T ss_dssp             H-HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             H-HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2 1111100100000000000111111123444444433  2445555  7888999999999876

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.84  E-value=3.2e-21  Score=184.23  Aligned_cols=257  Identities=14%  Similarity=0.009  Sum_probs=179.9

Q ss_pred             ccccCCChHHHHHHHHHHhcc---CCCC----CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHH
Q 017569           62 SFVTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA  133 (369)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~a  133 (369)
                      +-.|++.++.|.+++...+.+   |...    .-.++...++.+++++.+++++|++.+    ..+++ |+|||+++.++
T Consensus        10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~----~~v~f~t~~~T~a~n~~   85 (361)
T 3m5u_A           10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD----YEVLFLQGGASLQFAMI   85 (361)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCcHHHHHHHH
Confidence            334556678899998887643   2111    011335567778899999999999742    34777 99999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHHHhhhcceeEEEeccCCc-cccCHHHHHHHHhhcCcEEEEeeC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGY-YVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~-~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~-~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      +..+. +        |   ++ ..|+.+..+|.. ...++..|++++.++++.+. +.++++. +  |+++|++|.+++.
T Consensus        86 ~~~~~-~--------~---~~~~~i~~~~~~~~~-~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~  149 (361)
T 3m5u_A           86 PMNLA-L--------N---GVCEYANTGVWTKKA-IKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSN  149 (361)
T ss_dssp             HHHHC-C--------S---SCEEEEECSHHHHHH-HHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESE
T ss_pred             HHhcC-C--------C---CeEEEEeCCHHHHHH-HHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCC
Confidence            88763 1        1   11 134444555543 34456679999999998753 1256665 3  8889999999999


Q ss_pred             CCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       212 ~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      +|.+|.+.|.     +++ +      ++++|||++++.+..       +++++  .+|.+++++|||+ +|.|.|++++|
T Consensus       150 e~~tG~~~~~-----i~~-~------~~~~~vD~~q~~g~~-------~id~~--~~d~~~~s~~K~~-gp~G~g~l~~~  207 (361)
T 3m5u_A          150 NTIYGTQYQN-----YPK-T------KTPLIVDASSDFFSR-------KVDFS--NIALFYGGVQKNA-GISGLSCIFIR  207 (361)
T ss_dssp             ETTTTEECSS-----CCC-C------SSCEEEECGGGTTSS-------CCCCT--TEEEEEEETTTTS-SCTTCEEEEEE
T ss_pred             CCCcceeCCc-----ccc-c------CCEEEEEcccccCCC-------CCCcc--cCCEEEEechhcc-CCCccEEEEEc
Confidence            9999998552     332 5      999999999987665       24443  5899999999999 69999999998


Q ss_pred             CCCCccccccc--ccCccCCC--CCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          292 TKDDLPDELVF--HINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       292 ~~~~~~~~~~~--~~~y~~~~--~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ++..  +.+..  .+.+....  .......+|.+...++++..+++.+..+ |++.+  ++.+++++++++|+++|-+
T Consensus       208 ~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~  283 (361)
T 3m5u_A          208 KDML--ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGF  283 (361)
T ss_dssp             HHHH--HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred             HHHH--hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            6421  11110  11121100  0011223788888889999999999888 89988  9999999999999999833

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.84  E-value=4.7e-20  Score=177.97  Aligned_cols=250  Identities=10%  Similarity=0.011  Sum_probs=171.2

Q ss_pred             hHHHHHHHHHHhccCC-CC------CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINKNY-VD------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~-~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      ++.+.+++.+.+.... ..      +...+...++++++++++++++|.+.      ..+++++|++|+.+++.++..+ 
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~------~~i~~~sGt~a~~~a~~~~~~~-  108 (405)
T 2vi8_A           36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLEH-  108 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT-
T ss_pred             CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc------eEEEecCcHHHHHHHHHHhcCC-
Confidence            6888888888774321 11      11224567888889999999999874      1344455699999998887431 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHH-H--Hhhhcc--eeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEK-F--ARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLT  215 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-~--~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~t  215 (369)
                                  +++|+++.++|.++.. .  +...|.  .++.++++++++.+|+++|++++++ ++++|++ .+++ .
T Consensus       109 ------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~-~  174 (405)
T 2vi8_A          109 ------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAA-Y  174 (405)
T ss_dssp             ------------TCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSS-C
T ss_pred             ------------CCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCC-C
Confidence                        4689999999987653 2  234454  6667776644589999999999987 8888776 3444 3


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |...++++|.++|+++      ++++|+|++|+.+..+.  +.....  +..+|.++.++||++++|.| |++++++ +.
T Consensus       175 ~~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~~~--~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~  242 (405)
T 2vi8_A          175 PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVAA--GLHPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQE-QF  242 (405)
T ss_dssp             CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TSSCCS--TTTCSEEEEESSSTTCCCSC-EEEEECH-HH
T ss_pred             CccCCHHHHHHHHHHc------CCEEEEEcccccccccc--CcCCCc--cccCCEEEEeccccCCCCCC-eEEEEcH-HH
Confidence            6777899999999999      99999999998544321  111111  23689999999999987888 9988752 22


Q ss_pred             cccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . +.+... ..+.         .++.+....+++.+++..+..++++++  +..++++++.+.|++.|+
T Consensus       243 ~-~~l~~~~~~~~---------~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  301 (405)
T 2vi8_A          243 A-KQIDKAIFPGI---------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF  301 (405)
T ss_dssp             H-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             H-HHHHhhhcccc---------cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2 222111 0110         123333344555567776655677776  899999999999998753

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.84  E-value=6e-21  Score=187.75  Aligned_cols=219  Identities=11%  Similarity=-0.038  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhc
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE  175 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G  175 (369)
                      ..+++++++++ +|.+.      ..++|+|+++|+..++.++..+             +++|+++.++|.++..++...|
T Consensus        58 ~~~~~~~~la~-~g~~~------~v~~~~G~t~a~~~~~~a~~~~-------------gd~Vlv~~~~h~s~~~~~~~~G  117 (446)
T 2x3l_A           58 VILKSMKQVEK-HSDYD------GYFLVNGTTSGILSVIQSFSQK-------------KGDILMARNVHKSVLHALDISQ  117 (446)
T ss_dssp             HHHHHHHHHCS-CTTEE------EEEESSHHHHHHHHHHHTTTTS-------------SSCEEECTTCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh-cCCCc------eEEEeCCHHHHHHHHHHHhcCC-------------CCEEEEecCccHHHHHHHHHcC
Confidence            34567777999 98862      3788999999999998887432             4789999999999999999999


Q ss_pred             ceeEEEec--cCCc---cccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccc
Q 017569          176 VELKEVKL--EEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (369)
Q Consensus       176 ~~v~~v~~--~~~~---~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~  250 (369)
                      +.+++++.  +++.   +.+|+++|   +.+++++|+++. +|++|.+.|+++|+++|+++      ++|+|+|+||++ 
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~------~~~livDea~~~-  186 (446)
T 2x3l_A          118 QEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQL------NIPVLIDEAHGA-  186 (446)
T ss_dssp             CCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHT------TCCEEEECTTCT-
T ss_pred             CeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhc------CCeEEEcchhhh-
Confidence            99999998  4321   57899888   567889999998 56699999999999999999      999999999997 


Q ss_pred             cccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                      .+.|. +. +.+....++|+++.|+||+++++.|+|+++++++..-...+.......        ..++.+....+++.+
T Consensus       187 ~~~f~-~~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~--------~~~s~~~~~~aal~~  256 (446)
T 2x3l_A          187 HFGLQ-GF-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF--------QTSSPSYLIMASLES  256 (446)
T ss_dssp             TTTST-TS-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH--------SCSSCCHHHHHHHHH
T ss_pred             hhccC-CC-CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH--------cCCCchHHHHHHHHH
Confidence            33222 22 223222368999999999998999999999976522101111100011        113455555667777


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHH
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~  355 (369)
                      +++.+...|.+++  +..+++++++++
T Consensus       257 a~~~l~~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          257 AAQFYKTYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence            7887776666534  788888888876

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.84  E-value=6.2e-20  Score=176.57  Aligned_cols=246  Identities=13%  Similarity=0.053  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHh
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~  147 (369)
                      ++.+.+++.+.++....  ...++..++++    .+++++|.+.       +++|+||++|+.+++.++ ..        
T Consensus        19 ~~~~~~a~~~~~~~~~~--~~~~~~~~l~~----~la~~~~~~~-------~~~~~~gt~al~~~~~~~~~~--------   77 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI--TTGPKNQELEA----AFCRLTGNQY-------AVAVSSATAGMHIALMALGIG--------   77 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC--SSSHHHHHHHH----HHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred             CHHHHHHHHHHHhcCCc--CCChHHHHHHH----HHHHHhCCCc-------EEEecChHHHHHHHHHHcCCC--------
Confidence            35667888887765432  23344555554    4788888763       899999999999998886 22        


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHH
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL  227 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l  227 (369)
                           .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+++   +++|.+.|+++|.++
T Consensus        78 -----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l  149 (393)
T 1mdo_A           78 -----EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYAL  149 (393)
T ss_dssp             -----TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHH
T ss_pred             -----CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHH
Confidence                 146899999999999999999999999999987558899999999998888887754   589999999999999


Q ss_pred             HHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc--cCCCCCCCeEEEEEeCCCCccccccc--c
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVF--H  303 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~--~  303 (369)
                      |+++      ++++|+|++|+.+..+  .. .  .+..  .|.++.++|  |++.++ ..|+++.++++.. +.+..  .
T Consensus       150 ~~~~------~~~li~D~a~~~g~~~--~~-~--~~~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~-~~l~~~~~  214 (393)
T 1mdo_A          150 GERY------GIPVIEDAAHATGTSY--KG-R--HIGA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFA-DKLRSLKF  214 (393)
T ss_dssp             HHHH------TCCBCEECTTCTTCEE--TT-E--ETTS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHH-HHHHHHTB
T ss_pred             HHHc------CCeEEEECccccCCeE--CC-e--ecCC--CCeEEEeCCCCCccccc-cceEEEeCCHHHH-HHHHHHHh
Confidence            9999      9999999999864431  11 0  1111  799999999  999654 5677777543332 11111  0


Q ss_pred             cCccCCC--------CCCcc--ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          304 INYLGSD--------QPTFT--LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       304 ~~y~~~~--------~~~~~--l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+....        ...+.  ..|+......+...+++..+  +++++.  +..++++++++.|.+.|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~  281 (393)
T 1mdo_A          215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL--QKLDALNARRAAIAAQYHQAMADLP  281 (393)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0000000        00000  01221111233333333333  345555  77789999999999987

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.84  E-value=8.3e-20  Score=177.05  Aligned_cols=248  Identities=8%  Similarity=-0.120  Sum_probs=170.2

Q ss_pred             ChHHHHHHHHHHhccCCC---CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .+|.+.+++.+.++....   .+....+..++..++++++++++|.+.       .+++++|++|+..++.++..+    
T Consensus        74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~l~~~~~~----  142 (409)
T 3kki_A           74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE-------CLLSQSGWNANVGLLQTICQP----  142 (409)
T ss_dssp             TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe-------EEEecchHHHHHHHHHHhcCC----
Confidence            357788888888765221   111122333445567777999999874       577778899999888876442    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                               ++.|+++.++|.++..+++..|++++.++.      +|+++|++++++ ++++|+++.++||+|.+.|+++
T Consensus       143 ---------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~  207 (409)
T 3kki_A          143 ---------NTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE  207 (409)
T ss_dssp             ---------TCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred             ---------CCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence                     579999999999999999999998877653      579999999986 5899999999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      |.++|+++      ++++++|++|+.+.+..........+. ...+|.++.+.+|+++++  .|+++.++ +.. ..+..
T Consensus       208 l~~la~~~------~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~-~~~~~  277 (409)
T 3kki_A          208 LVNISKEF------GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVN-RCVPF  277 (409)
T ss_dssp             HHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGG-GTHHH
T ss_pred             HHHHHHHc------CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECH-HHH-HHHHH
Confidence            99999999      999999999987544211110001111 135789999999999766  37776643 332 22211


Q ss_pred             -ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 -HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 -~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       ...+..        .++.+....+++.++++.+...  .++  +..++.+++.+.|++.|+
T Consensus       278 ~~~~~~~--------~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~  329 (409)
T 3kki_A          278 ISYPAIF--------SSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLGL  329 (409)
T ss_dssp             HCHHHHH--------SBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hCcCccc--------cCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCC
Confidence             111111        1122222344555566655332  233  788899999999998864

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.84  E-value=1.3e-19  Score=174.47  Aligned_cols=257  Identities=11%  Similarity=0.026  Sum_probs=166.4

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..++.+.+++.+++....  +...+...++|++    +++++|.+.       .+++++|++|+.+++.+++...     
T Consensus        12 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~----la~~~~~~~-------~i~~~sGt~a~~~al~~~~~~~-----   73 (390)
T 3b8x_A           12 TWDDLEYKAIQSVLDSKM--FTMGEYVKQYETQ----FAKTFGSKY-------AVMVSSGSTANLLMIAALFFTK-----   73 (390)
T ss_dssp             CCCHHHHHHHHHHHHHTC--CSSCHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHTTSSS-----
T ss_pred             CCCHHHHHHHHHHHHcCC--CCCChHHHHHHHH----HHHHHCCCc-------EEEECCHHHHHHHHHHHHHhhh-----
Confidence            445777788888776532  2334455555554    788888863       7899999999999888762100     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~  226 (369)
                      ..+ -..+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+++   +++|.+.|+++|.+
T Consensus        74 ~~~-~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~g~~~~~~~i~~  149 (390)
T 3b8x_A           74 KPR-LKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTV---NLLGNPNNFDEINK  149 (390)
T ss_dssp             SCS-CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEE---CGGGCCCCHHHHHH
T ss_pred             hcC-CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEE---CCccChhhHHHHHH
Confidence            000 01246899999999999999999999999999987568999999999999888888876   36788999999999


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc--cc
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV--FH  303 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~--~~  303 (369)
                      +|+++      ++++|+|++|+.+..+  ..   .... ...+.+++..+.|.+.+|.| |+++.++++.. ..+.  ..
T Consensus       150 l~~~~------~~~li~D~a~~~g~~~--~~---~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~-~~~~~~~~  216 (390)
T 3b8x_A          150 IIGGR------DIILLEDNCESMGATF--NN---KCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY-HILLCIRA  216 (390)
T ss_dssp             HHTTS------CCEEEEECTTCTTCEE--TT---EETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHH-HHHHHHTB
T ss_pred             HHHHc------CCEEEEECcCcccCEE--CC---cccccccceEEEEccCCCCCccCCc-eEEEeCCHHHH-HHHHHHHh
Confidence            99999      9999999999855431  11   1111 11223444333444455666 88887653321 1110  01


Q ss_pred             cCccCC-----------------CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          304 INYLGS-----------------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       304 ~~y~~~-----------------~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+...                 ....+...|.+.....+.+++++..+  +.+++.  +..++++++.+.|++.+
T Consensus       217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~  290 (390)
T 3b8x_A          217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHP  290 (390)
T ss_dssp             TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            110000                 00001111222223345555555544  445555  88899999999998864

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.84  E-value=1.9e-19  Score=179.61  Aligned_cols=200  Identities=11%  Similarity=-0.038  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHhcc----CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHH-HHHHHH
Q 017569           70 PECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQK  144 (369)
Q Consensus        70 ~~v~~~~~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~-~~~~~~  144 (369)
                      +.+.+.+.+.+..    ....|....+..++++++.+++.+..|.+.+.   ..+++|+|+++++.+++.++. .+    
T Consensus       109 ~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~~----  181 (500)
T 3tcm_A          109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA---DDIFLTDGASPGVHLMMQLLIRNE----  181 (500)
T ss_dssp             HHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG---GGEEEESSSHHHHHHHHHHHCCST----
T ss_pred             HHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc---ccEEEcCCHHHHHHHHHHHHcCCC----
Confidence            3344444555554    23455666788999999999999988866422   458999999999999988874 32    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhh------cCcEEEEeeCCCCccc
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGE  217 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~  217 (369)
                               ++.|+++.++|..+..+++..|+.++.++++++ ++.+|+++|++++++      ++++|++++|+||||.
T Consensus       182 ---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~  252 (500)
T 3tcm_A          182 ---------KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ  252 (500)
T ss_dssp             ---------TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred             ---------CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence                     478999999999999999999999999999763 579999999999987      7889999999999999


Q ss_pred             CC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-----ccc--CCCCcEEE-EcCccCCC--CCCC
Q 017569          218 FE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-----DFR--LPLVKSIN-VSGHKYGL--VYAG  284 (369)
Q Consensus       218 ~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-----~~~--~~~~Dsi~-~~~hK~l~--~p~g  284 (369)
                      +-   ++++|+++|+++      ++++++|++|+.+.+.--.+...+     ++.  ......++ .+++|.++  ...+
T Consensus       253 ~~s~~~l~~i~~la~~~------~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R  326 (500)
T 3tcm_A          253 VLAEENQYDIVKFCKNE------GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR  326 (500)
T ss_dssp             CCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred             cCCHHHHHHHHHHHHHc------CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence            84   477788889999      999999999987554100011110     110  11233444 47899873  3566


Q ss_pred             eEEEEEe
Q 017569          285 VGWVVWR  291 (369)
Q Consensus       285 ~g~l~~~  291 (369)
                      .|++++.
T Consensus       327 ~G~~~~~  333 (500)
T 3tcm_A          327 GGYFEIT  333 (500)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEe
Confidence            7999874

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.84  E-value=7.2e-20  Score=175.13  Aligned_cols=244  Identities=11%  Similarity=0.057  Sum_probs=169.3

Q ss_pred             HHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHh-CCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 017569           75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD  153 (369)
Q Consensus        75 ~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~  153 (369)
                      .+.+.+......|...++..+++++    +++++ +.++     ..+++|+||++|+..++.++..+             
T Consensus        47 ~~~~~~~~~~~~y~~~~g~~~l~~~----la~~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~~-------------  104 (375)
T 3op7_A           47 DFYKKLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKP-----EQILQTNGATGANLLVLYSLIEP-------------  104 (375)
T ss_dssp             HHHHHHHTSCCSSCCTTCCHHHHHH----HHTTSSSCCG-----GGEEEESHHHHHHHHHHHHHCCT-------------
T ss_pred             HHHHHHhcCCcCCCCCCChHHHHHH----HHHHhccCCh-----hhEEEcCChHHHHHHHHHHhcCC-------------
Confidence            4445555555666666777888877    55554 3443     35899999999999999887442             


Q ss_pred             CCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHH
Q 017569          154 KPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLT  229 (369)
Q Consensus       154 ~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~  229 (369)
                      +++|+++.++|.++...++..|++++.+|++. +++.+|+++|++++++++++|+++.++||+|.+.|   +++|.++|+
T Consensus       105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~  184 (375)
T 3op7_A          105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIAS  184 (375)
T ss_dssp             TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999873 45789999999999999999999999999999988   999999999


Q ss_pred             HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccC
Q 017569          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLG  308 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~  308 (369)
                      ++      ++++++|++|+.+...   +. .........+.+..+.+|.++ .+.+.|+++. +++.. +.+.....+. 
T Consensus       185 ~~------~~~li~De~~~~~~~~---~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~-~~~~~~~~~~-  251 (375)
T 3op7_A          185 EV------GAYILSDEVYRSFSEL---DV-PSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVT-DILRDYRDYT-  251 (375)
T ss_dssp             TT------TCEEEEECCSCCCSSS---CC-CCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHH-HHHTTTGGGT-
T ss_pred             Hc------CCEEEEEccccccccc---CC-CchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHH-HHHHHHHhhh-
Confidence            99      9999999999875431   11 111112244566778999986 4466788887 33222 2221111110 


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          309 SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       309 ~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                          .    .+.+......+..+++.. .+.++++  +..++++++.+.|++.+.+
T Consensus       252 ----~----~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~  298 (375)
T 3op7_A          252 ----M----ICAGVFDDLVAQLALAHY-QEILERNRHILEENLAILDQWIEEEPLV  298 (375)
T ss_dssp             ----T----SCCCHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             ----c----cCCCcHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence                0    111222223333334322 2334444  6688899999999886543

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.84  E-value=1.3e-19  Score=172.11  Aligned_cols=252  Identities=14%  Similarity=0.001  Sum_probs=173.1

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+...+. ++++.+.+++.+.+.....+  ..++..+++    +++++++|+++     ...++|+||++|+..++.+
T Consensus        29 idl~~~~~~~~~~~~v~~a~~~~~~~~~~y--~~~~~~~l~----~~la~~~~~~~-----~~i~~~~g~t~al~~~~~~   97 (361)
T 3ftb_A           29 LDYSSNINPLGIPKSFLNNIDEGIKNLGVY--PDVNYRRLN----KSIENYLKLKD-----IGIVLGNGASEIIELSISL   97 (361)
T ss_dssp             EETTCCCCTTCSCHHHHTTHHHHHHGGGSC--CCTTCHHHH----HHHHHHHTCCS-----CEEEEESSHHHHHHHHHTT
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHhcCC--CCccHHHHH----HHHHHHhCCCc-----ceEEEcCCHHHHHHHHHHH
Confidence            444444332 34577888888777653222  224444554    45778888765     2489999999999888776


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG  216 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG  216 (369)
                      +                 ++|+++.++|..+...++..|++++.+|++++ +.+++++|++++++ +++|+++.|+||||
T Consensus        98 ~-----------------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~l~~-~~~v~i~~p~nptG  158 (361)
T 3ftb_A           98 F-----------------EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN-MCIDYEDIISKIDD-VDSVIIGNPNNPNG  158 (361)
T ss_dssp             C-----------------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHTTT-CSEEEEETTBTTTT
T ss_pred             c-----------------CcEEEecCChHHHHHHHHHcCCeEEEeecCcc-cCCCHHHHHHhccC-CCEEEEeCCCCCCC
Confidence            4                 37999999999999999999999999999864 57888999999988 99999999999999


Q ss_pred             cCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          217 EFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       217 ~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      .+.|   +++|+++|+++      ++++|+|++|+.+...  .+...... .......+..+.+|.++ .+.+.|++++.
T Consensus       159 ~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~  230 (361)
T 3ftb_A          159 GLINKEKFIHVLKLAEEK------KKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITN  230 (361)
T ss_dssp             BCCCHHHHHHHHHHHHHH------TCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEES
T ss_pred             CCCCHHHHHHHHHHhhhc------CCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeC
Confidence            9865   77788888899      9999999999876542  11111111 12233455668999986 45677888755


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc-HhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      +++.. ..+....       ..    ++.+   .+.++++...+. .+.+.++  +..++.+++++.|++.+.+
T Consensus       231 ~~~~~-~~~~~~~-------~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  289 (361)
T 3ftb_A          231 NKEIA-AKIKAKQ-------NP----WNIN---CFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFI  289 (361)
T ss_dssp             CHHHH-HHHHTTS-------CT----TCSC---HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred             CHHHH-HHHHhhC-------CC----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            54332 2211100       01    1222   344444444443 3455555  7889999999999987544

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.84  E-value=5.6e-20  Score=177.46  Aligned_cols=256  Identities=13%  Similarity=0.021  Sum_probs=170.5

Q ss_pred             ccccccccCC--ChHHHHHHHHHHhccCCCCCCCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHH
Q 017569           58 LNLASFVTTW--MEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML  132 (369)
Q Consensus        58 ~~l~~~~~~~--~~~~v~~~~~~~~~~n~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~  132 (369)
                      ++|.+..+.+  +++.+.+++.+.++.....+..+.   +......++++.+++++|.+.       .+++++|++|+..
T Consensus        48 id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~  120 (401)
T 1fc4_A           48 INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFDANGG  120 (401)
T ss_dssp             EECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHT
T ss_pred             EEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCc-------EEEeCChHHHHHH
Confidence            3444443332  357788888877754221111111   113445566777888888862       5677778999988


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEE
Q 017569          133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICV  206 (369)
Q Consensus       133 al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v  206 (369)
                      ++.++..+             ++.|+++.++|.++..+++..|++++.+|.      +|+++|++++++      ++++|
T Consensus       121 ~~~~~~~~-------------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v  181 (401)
T 1fc4_A          121 LFETLLGA-------------EDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAGARHVLI  181 (401)
T ss_dssp             THHHHCCT-------------TCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTTCSSEEE
T ss_pred             HHHHHcCC-------------CCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccCCCceEE
Confidence            87776432             468999999999988899999999888763      378899998876      78999


Q ss_pred             EEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccc-cccccccCCCcc--ccccCCCCcEEEEcCccCCCCCC
Q 017569          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDLE--WDFRLPLVKSINVSGHKYGLVYA  283 (369)
Q Consensus       207 ~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~-~~~~~~~~~~~~--~~~~~~~~Dsi~~~~hK~l~~p~  283 (369)
                      +++.++||+|.+.|+++|.++|+++      ++++|+|++|+ ++..+ ......  .++ ..++|.++.++||+++++.
T Consensus       182 ~~~~~~nptG~~~~~~~i~~l~~~~------~~~li~De~~~~g~~~~-~g~~~~~~~~~-~~~~di~~~s~sK~~~~~~  253 (401)
T 1fc4_A          182 ATDGVFSMDGVIANLKGVCDLADKY------DALVMVDDSHAVGFVGE-NGRGSHEYCDV-MGRVDIITGTLGKALGGAS  253 (401)
T ss_dssp             EEESEETTTTEECCHHHHHHHHHHT------TEEEEEECTTTTTTSST-TSCCHHHHTTC-TTCCSEEEEESSSTTCSSS
T ss_pred             EEeCCcCCCCCCCCHHHHHHHHHHc------CCEEEEECcccccccCC-CCCccHHHcCC-CcCCcEEEecchhhccCCC
Confidence            9999999999999999999999999      99999999996 43211 000001  122 2367999999999996677


Q ss_pred             CeEEEEEeCCCCccccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          284 GVGWVVWRTKDDLPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      | |+++.++ +.. +.+.. ...|.        ..++.+.....++..+++.+..  ..++  +..++++++.+.|++.|
T Consensus       254 g-G~~~~~~-~~~-~~l~~~~~~~~--------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g  320 (401)
T 1fc4_A          254 G-GYTAARK-EVV-EWLRQRSRPYL--------FSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAG  320 (401)
T ss_dssp             C-EEEEECH-HHH-HHHHHHCHHHH--------HSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-EEEEcCH-HHH-HHHHHhCcCce--------eCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC
Confidence            6 8888743 222 22211 11111        0123333334444455555422  2333  88899999999999875

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.84  E-value=1.5e-19  Score=177.91  Aligned_cols=209  Identities=15%  Similarity=0.052  Sum_probs=157.4

Q ss_pred             ccccccccCC---ChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           58 LNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        58 ~~l~~~~~~~---~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++|+.+.|.+   +++.+.+++.+.++..   ...|....+..++++++.+++.+.+|.+ +.   ..+++|+|+++|+.
T Consensus        79 i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~---~~v~~t~G~~~al~  154 (448)
T 3aow_A           79 ISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD---NDIMITSGSQQALD  154 (448)
T ss_dssp             EECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT---SEEEEESSHHHHHH
T ss_pred             EeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch---hhEEEeCcHHHHHH
Confidence            4666655542   4567888888777543   2345555678999999999888888984 21   35899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----h--cCcE
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NTIC  205 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~--~~~~  205 (369)
                      .++.++.++             +++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++    +  ++++
T Consensus       155 ~~~~~l~~~-------------Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~L~~~l~~~~~~~~~~k~  219 (448)
T 3aow_A          155 LIGRVFLNP-------------GDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE-G-MKVEILEEKLKELKSQGKKVKV  219 (448)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHhhhhccCCCCeE
Confidence            998887542             478999999999999999999999999999864 3 99999999998    5  6788


Q ss_pred             E-EEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC
Q 017569          206 V-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (369)
Q Consensus       206 v-~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~  281 (369)
                      | +++.++||||.+.+   +++|+++|+++      ++++++|++|+.+...--....-..+...+.+....+.+|+++.
T Consensus       220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~------~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~  293 (448)
T 3aow_A          220 VYTVPTFQNPAGVTMNEDRRKYLLELASEY------DFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP  293 (448)
T ss_dssp             EEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCG
T ss_pred             EEECCCCCCCcCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccc
Confidence            7 46889999999865   67999999999      99999999998765310000000122222445667778999874


Q ss_pred             CCCeEEEEEe
Q 017569          282 YAGVGWVVWR  291 (369)
Q Consensus       282 p~g~g~l~~~  291 (369)
                      +..+|+++++
T Consensus       294 GlriG~v~~~  303 (448)
T 3aow_A          294 GFRIGWMVGD  303 (448)
T ss_dssp             GGCCEEEEEC
T ss_pred             cccEEEEEeC
Confidence            4568999885

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.83  E-value=1.1e-19  Score=175.48  Aligned_cols=247  Identities=10%  Similarity=0.011  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ  148 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~-~~~~~~~~~~~  148 (369)
                      +.+.+++.+++..+... ..++...+++    +.+++++|.+.       +++|+||++|+.+++.++ ..         
T Consensus        12 ~~v~~a~~~~~~~~~~~-~~g~~~~~l~----~~la~~~~~~~-------v~~~~ggt~al~~~~~~l~~~---------   70 (394)
T 1o69_A           12 GNELKYIEEVFKSNYIA-PLGEFVNRFE----QSVKDYSKSEN-------ALALNSATAALHLALRVAGVK---------   70 (394)
T ss_dssp             CCHHHHHHHHHHHTTTS-CTTHHHHHHH----HHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHHcCCcc-CCChHHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence            45667777776543211 1122244454    45788888753       899999999999998886 22         


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCCCHHHHH
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLH  225 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~l~~I~  225 (369)
                          .+++|+++.++|.++..+++..|++++.+|+++ ++.+|+++|++++++   ++++|+++.   ++|...|+++|.
T Consensus        71 ----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~  142 (394)
T 1o69_A           71 ----QDDIVLASSFTFIASVAPICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIV  142 (394)
T ss_dssp             ----TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHH
T ss_pred             ----CCCEEEECCCccHHHHHHHHHcCCEEEEEEeCC-CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHH
Confidence                146899999999999999999999999999985 589999999999987   788888774   899999999999


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccC
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN  305 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  305 (369)
                      ++|+++      ++++|+|++|+.+..+ . .. .. .....+|.++++.||.+ +|.+.|++++++++.. +.+.....
T Consensus       143 ~l~~~~------~~~li~Dea~~~g~~~-~-~~-~~-~~~~~~~~~s~s~~K~l-~~~~~G~~~~~~~~l~-~~l~~~~~  210 (394)
T 1o69_A          143 EICKEN------DIVLIEDAAEALGSFY-K-NK-AL-GTFGEFGVYSYNGNKII-TTSGGGMLIGKNKEKI-EKARFYST  210 (394)
T ss_dssp             HHHHHT------TCEEEEECTTCTTCEE-T-TE-ET-TSSSSEEEEECCTTSSS-CCSSCEEEEESCHHHH-HHHHHHTB
T ss_pred             HHHHHc------CCEEEEECcCccccee-C-Cc-cc-ccccCcEEEEEeCCccC-CCCCceEEEECCHHHH-HHHHHHHH
Confidence            999999      9999999999843321 1 11 00 01236899999999977 5678999998654332 12211111


Q ss_pred             cc--CCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          306 YL--GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       306 y~--~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +.  .....+....|.+.....+...+++..+  +-+++.  +..++++++++.|++.
T Consensus       211 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~  266 (394)
T 1o69_A          211 QARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--EVLEQRVLKKREIYEWYKEFLGEY  266 (394)
T ss_dssp             TCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hccccCccccccccCcccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc
Confidence            11  0000011111222222233333333332  224444  8889999999999875

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.83  E-value=2.5e-19  Score=174.20  Aligned_cols=224  Identities=16%  Similarity=0.027  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~  171 (369)
                      ..+++++++++++|.+.       +++++||++|+..++.++..             .+++|+++.++|.++...    +
T Consensus        57 ~~~~l~~~la~~~g~~~-------~~~~~~gt~a~~~al~~l~~-------------~gd~vi~~~~~~~~~~~~~~~~~  116 (412)
T 2cb1_A           57 TAKALEERLKALEGALE-------AVVLASGQAATFAALLALLR-------------PGDEVVAAKGLFGQTIGLFGQVL  116 (412)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEETTCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHHH
Confidence            34456667999999863       89999999999999887632             146899999999876554    4


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      +..|++++.+|++       +++|++++++++++|++++++||+|.+.|+++|+++|+++      ++++|+|++|+.+.
T Consensus       117 ~~~g~~~~~~~~~-------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~------~~~li~D~~~~~~~  183 (412)
T 2cb1_A          117 SLMGVTVRYVDPE-------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA------GVALVVDNTFGAAG  183 (412)
T ss_dssp             TTTTCEEEEECSS-------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGTTT
T ss_pred             HHcCCEEEEECCC-------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence            5578888888753       8999999999999999999999999999999999999999      99999999998752


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCccccc-ccccCc-cCC---------C----CCCcc
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLPDEL-VFHINY-LGS---------D----QPTFT  315 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~-~~~~~y-~~~---------~----~~~~~  315 (369)
                      .. ..   ...   .++|.++.++||++++|.+ .|+++++++......+ ....+. .+.         .    ...++
T Consensus       184 ~~-~~---~~~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~  256 (412)
T 2cb1_A          184 AL-CR---PLA---WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG  256 (412)
T ss_dssp             TS-CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH
T ss_pred             cc-CC---ccc---cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH
Confidence            10 11   111   3689999999999988776 6777776643210000 000000 000         0    00000


Q ss_pred             --ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          316 --LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       316 --l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                        ..|.  ...+...|+.+..+  +.+...  +..++++++.++|.+.+.+.
T Consensus       257 ~~~~g~--~~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~  304 (412)
T 2cb1_A          257 LSLCGM--ALSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVK  304 (412)
T ss_dssp             TTTTCC--CCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCS
T ss_pred             HHhcCC--CCChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence              0111  11245555555544  334444  67789999999999875543

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.83  E-value=9e-20  Score=176.35  Aligned_cols=213  Identities=12%  Similarity=-0.019  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----h
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R  172 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~----~  172 (369)
                      ..++++.+++++|.+.       .++++||++|+..++.++..+             +++|+++.+.|.++...+    +
T Consensus        68 ~~~l~~~la~~~g~~~-------~~~~~sGt~A~~~al~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~  127 (392)
T 3qhx_A           68 RTALEAALAAVEDAAF-------GRAFSSGMAAADCALRAMLRP-------------GDHVVIPDDAYGGTFRLIDKVFT  127 (392)
T ss_dssp             HHHHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCcchHHHHHHHHHH
Confidence            3455666999999873       789999999999998876431             468999999998766555    6


Q ss_pred             hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      ..|++++.+|++      |+++|++++++++++|++..++||+|.+.|+++|+++|+++      ++++|+|++|+.+..
T Consensus       128 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------g~~li~D~~~~~~~~  195 (392)
T 3qhx_A          128 GWNVEYTPVALA------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS------SAKVLVDNTFASPAL  195 (392)
T ss_dssp             GGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred             hcCcEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            678888888864      78999999999999999999999999999999999999999      999999999985432


Q ss_pred             cccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       253 ~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                        ..   +..   .++|.++.|+||+++++.+  .|+++.++++.. ..+.......          +..  ...+.+|.
T Consensus       196 --~~---~~~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~-~~l~~~~~~~----------g~~--~~~~~~~~  254 (392)
T 3qhx_A          196 --QQ---PLS---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD-QSFAFLQNGA----------GAV--PGPFDAYL  254 (392)
T ss_dssp             --CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCC--CCHHHHHH
T ss_pred             --CC---hHH---hCCcEEEEcCccccCCCCCceEEEEEECcHHHH-HHHHHHHHhc----------CCC--CCHHHHHH
Confidence              11   112   2689999999999976643  788887653322 1111100000          111  12456666


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      .++.+..  +...  +..+++++++++|++.+.+.+
T Consensus       255 ~~~~l~~--l~~~~~~~~~~~~~l~~~L~~~~~v~~  288 (392)
T 3qhx_A          255 TMRGLKT--LVLRMQRHSENAAAVAEFLAEHPAIST  288 (392)
T ss_dssp             HHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHhhhhH--HHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence            6665543  3333  788999999999998766543

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.83  E-value=4.9e-20  Score=178.36  Aligned_cols=215  Identities=13%  Similarity=0.033  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH---
Q 017569           95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---  171 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~---  171 (369)
                      ....++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.++...+   
T Consensus        65 ~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~  124 (398)
T 1gc0_A           65 PTLNLLEARMASLEGGEA-------GLALASGMGAITSTLWTLLRP-------------GDEVLLGNTLYGCTFAFLHHG  124 (398)
T ss_dssp             HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSCCSHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhcC-------------CCEEEEeCCCchhHHHHHHHH
Confidence            344456666899999863       677788899999998887431             468999999999877665   


Q ss_pred             -hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccc
Q 017569          172 -RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (369)
Q Consensus       172 -~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~  250 (369)
                       ...|++++.++.+      |+++|++++++++++|+++.++||+|.+.|+++|+++|+++      ++++|+|++|+.+
T Consensus       125 ~~~~g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~~  192 (398)
T 1gc0_A          125 IGEFGVKLRHVDMA------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDNTYCTP  192 (398)
T ss_dssp             GGGGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEECTTTHH
T ss_pred             HHHcCCEEEEECCC------CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence             6678888888753      78999999999999999999999999999999999999999      9999999999876


Q ss_pred             cccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCc-cCCCCCCccccCCcchhHHHH
Q 017569          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIA  327 (369)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y-~~~~~~~~~l~~tr~~~~~l~  327 (369)
                      ..+  .+   ..   .++|.++.++||++++|.+  .|+++.+++ .+...+.....+ .+         ++-   ..+.
T Consensus       193 ~~~--~~---~~---~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~---------~~~---~~~~  251 (398)
T 1gc0_A          193 YLQ--RP---LE---LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTG---------AVL---SPHD  251 (398)
T ss_dssp             HHC--CG---GG---GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTC---------CCC---CHHH
T ss_pred             ccC--Cc---hh---hCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCC---------CCC---CHHH
Confidence            541  11   11   2689999999999988775  588887542 221111110111 11         111   2455


Q ss_pred             HHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          328 QYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       328 ~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      +|++++.+.  .+..+  +..++++++++.|++.+.+.+
T Consensus       252 ~~~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~~v~~  288 (398)
T 1gc0_A          252 AALLMRGIK--TLNLRMDRHCANAQVLAEFLARQPQVEL  288 (398)
T ss_dssp             HHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCCeeE
Confidence            566555553  23333  788899999999998775543

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.83  E-value=1.3e-19  Score=177.17  Aligned_cols=275  Identities=11%  Similarity=-0.042  Sum_probs=179.3

Q ss_pred             cCCCC--ccccccccCCChHHHHHHHHHHhccCC------------CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCC
Q 017569           53 DGNPR--LNLASFVTTWMEPECDKLVMASINKNY------------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA  118 (369)
Q Consensus        53 ~~~p~--~~l~~~~~~~~~~~v~~~~~~~~~~n~------------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~  118 (369)
                      .++|.  ++|+........+.+.+++.+......            ..|....+..++++++.+++.+..|....- ...
T Consensus        34 ~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~~  112 (435)
T 3piu_A           34 VHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF-DPN  112 (435)
T ss_dssp             TTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC-CGG
T ss_pred             ccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCC-CHH
Confidence            44554  344433333345666777766543221            223444577899999888888776622100 113


Q ss_pred             CeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh-hhcceeEEEeccC-CccccCHHHHH
Q 017569          119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEE-GYYVMNPVKAV  196 (369)
Q Consensus       119 ~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~-~~G~~v~~v~~~~-~~~~~d~~~L~  196 (369)
                      .+++|+||++|+..++.+++++             ++.|+++.++|.++...+. ..|++++.+|+++ +++.+|+++|+
T Consensus       113 ~v~~~~gg~~a~~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  179 (435)
T 3piu_A          113 HLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE  179 (435)
T ss_dssp             GEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred             HEEEcCChHHHHHHHHHHhcCC-------------CCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence            5899999999999999887542             4689999999999998888 7899999999875 23779999999


Q ss_pred             HHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--cccc-
Q 017569          197 ELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR-  264 (369)
Q Consensus       197 ~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~-  264 (369)
                      +++++      ++++|+++.|+||||.+-+   +++|+++|+++      ++++++|++|+++.+.  .....  ..+. 
T Consensus       180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~~--~~~~~~~~~~~~  251 (435)
T 3piu_A          180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK------GIHLISDEIYSGTAFS--SPSFISVMEVLK  251 (435)
T ss_dssp             HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCS--SSCCCCHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEeccccccccC--CCCCcCHHHhcc
Confidence            99987      7889999999999999844   68899999999      9999999999875431  11100  0111 


Q ss_pred             C---------CCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH
Q 017569          265 L---------PLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR  334 (369)
Q Consensus       265 ~---------~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~  334 (369)
                      .         .....+..+++|+++ .+.+.|+++.+++... ..+.....+.           +-+......+...+..
T Consensus       252 ~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~l~~  319 (435)
T 3piu_A          252 DRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSFG-----------LVSSQTQHLLSAMLSD  319 (435)
T ss_dssp             C-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGGS-----------CCCHHHHHHHHHHHHC
T ss_pred             ccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHHHhhcC-----------CCCHHHHHHHHHHhcC
Confidence            1         112266778999986 5567899988543222 1211111111           1111112222222332


Q ss_pred             hc--HhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          335 LG--FEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       335 lg--~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..  .+.+.+.  +..++.+++++.|++.|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  350 (435)
T 3piu_A          320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSGI  350 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            21  2233444  778889999999998763

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.83  E-value=1e-19  Score=175.78  Aligned_cols=215  Identities=15%  Similarity=0.082  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----Hh
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR  172 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~~  172 (369)
                      ..++++++++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.++...    ++
T Consensus        61 ~~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~~~~~~-------------gd~vl~~~~~y~~~~~~~~~~~~  120 (389)
T 3acz_A           61 VEQFEEMVCSIEGAAG-------SAAFGSGMGAISSSTLAFLQK-------------GDHLIAGDTLYGCTVSLFTHWLP  120 (389)
T ss_dssp             HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHTTTCCT-------------TCEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence            3455566899998863       678888999998888776331             46899999999886655    57


Q ss_pred             hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       173 ~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      ..|++++.+|.      .|+++|++++++++++|+++.++||+|.+.|+++|+++|+++      ++++|+|++|+.+..
T Consensus       121 ~~g~~~~~v~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~------~~~livD~~~~~~~~  188 (389)
T 3acz_A          121 RFGIEVDLIDT------SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER------GARLVVDATFTSPCF  188 (389)
T ss_dssp             HTTCEEEEECT------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred             HcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence            78999988886      278999999999999999999999999999999999999999      999999999986543


Q ss_pred             cccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       253 ~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                        ..   +.+   .++|.++.++||++++|.+  .|+++.++.+.. ..+.......+.         +   ......|.
T Consensus       189 --~~---~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~-~~l~~~~~~~g~---------~---~~~~~~~~  247 (389)
T 3acz_A          189 --LK---PLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDI-ATIKFYRKDAGS---------L---MAPMDAFL  247 (389)
T ss_dssp             --CC---GGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHCC---------C---CCHHHHHH
T ss_pred             --cC---ccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHH-HHHHHHHHhcCC---------C---CCHHHHHH
Confidence              11   122   3689999999999988877  688887642222 122111111111         1   12355666


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcccc
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      +++.+.  .+...  +..++++.+++.|++.+.+.+.+
T Consensus       248 ~~~~l~--~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~  283 (389)
T 3acz_A          248 CARGMK--TLPIRMQIHMENGLKVAKFLEQHEKIVKVN  283 (389)
T ss_dssp             HHHHHT--THHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             HHcCcc--HHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence            666664  23332  77789999999999987665554

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.83  E-value=1.3e-19  Score=176.41  Aligned_cols=214  Identities=10%  Similarity=-0.035  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh--
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY--  173 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~--  173 (369)
                      ..+++++++++++|.+.       .++++||++|+..++.++..+             ++.|+++.+.|..+...++.  
T Consensus        82 ~~~~l~~~la~~~g~~~-------~~~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~  141 (414)
T 3ndn_A           82 TVSVFEERLRLIEGAPA-------AFATASGMAAVFTSLGALLGA-------------GDRLVAARSLFGSCFVVCSEIL  141 (414)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEESCCCHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCccchHHHHHHHHH
Confidence            44566677999999764       789999999998888876432             47899999999987766644  


Q ss_pred             --hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          174 --FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       174 --~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                        .|++++.+|.+      |+++|+++++++|++|+++.++||+|.+.|+++|+++|+++      ++++++|++|+.+.
T Consensus       142 ~~~g~~~~~v~~~------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~------g~~livDe~~~~~~  209 (414)
T 3ndn_A          142 PRWGVQTVFVDGD------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA------GAKVVLDNVFATPL  209 (414)
T ss_dssp             HHTTCEEEEECTT------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHH
T ss_pred             HHcCcEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence              89999888865      78999999999999999999999999999999999999999      99999999998543


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      .  ..+   .   ..++|.++.+++|+++++..  .|+++.++. .+...+.......+          +.  ......|
T Consensus       210 ~--~~~---~---~~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~g----------~~--~~~~~a~  268 (414)
T 3ndn_A          210 L--QQG---F---PLGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHTG----------PA--MSAFNAW  268 (414)
T ss_dssp             H--CCC---G---GGTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHHC----------CC--CCHHHHH
T ss_pred             c--CCc---h---hcCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHcC----------CC--CCHHHHH
Confidence            2  111   1   22689999999999965432  688877543 22111111011111          11  1245566


Q ss_pred             HHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          330 YQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       330 ~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      .+++.+.  .+..+  +..++++++++.|++.+.+++
T Consensus       269 ~~~~~l~--~l~~r~~~~~~~a~~l~~~L~~~p~v~~  303 (414)
T 3ndn_A          269 VLLKGLE--TLAIRVQHSNASAQRIAEFLNGHPSVRW  303 (414)
T ss_dssp             HHHHHGG--GHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCEeE
Confidence            6666543  34333  888999999999998876543

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.83  E-value=3e-19  Score=170.71  Aligned_cols=265  Identities=13%  Similarity=0.029  Sum_probs=178.6

Q ss_pred             CCccccccccCC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        56 p~~~l~~~~~~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      ..++|+...+.. .++.+.+++.+.+. ....|....+..++++++.+++++.+|.+.+   ....++|+||++++.+++
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~---~~~i~~t~g~~~al~~~~   99 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTH-SLNIYPKSAFEESLRAAQRGFFKRRFKIELK---ENELISTLGSREVLFNFP   99 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGG-GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC---GGGEEEESSSHHHHHHHH
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhh-hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC---HHHEEECcCcHHHHHHHH
Confidence            445666555543 45778888887763 3333444456789999999999999998432   145899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .++..+           ..+++|+++.++|..+...++..|++++.+|++++ ..+++ +|++++.+++++|+++.|+||
T Consensus       100 ~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p~np  166 (376)
T 3ezs_A          100 SFVLFD-----------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSPNNP  166 (376)
T ss_dssp             HHHTTT-----------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSSCTT
T ss_pred             HHHcCC-----------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCCCCC
Confidence            887431           01368999999999999999999999999999764 24444 778888888999999999999


Q ss_pred             cccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc------cCCCCcEEEEcCccCCC-CCCC
Q 017569          215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF------RLPLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       215 tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~------~~~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      ||.+.+   +++|+++|+++      ++++|+|++|+.+...- .+......      .....+.+..+.+|+++ .+.+
T Consensus       167 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  239 (376)
T 3ezs_A          167 TGRTLSLEELISWVKLALKH------DFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLR  239 (376)
T ss_dssp             TCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGC
T ss_pred             cCCCCCHHHHHHHHHHHHHc------CcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCccce
Confidence            999966   77788889999      99999999999755411 01000010      02356778888999984 5677


Q ss_pred             eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHH
Q 017569          285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       285 ~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                      .|+++.. ++.. ..+.....+.     .    ++-+.....++..+++.  .+.++++  +..++.+++.+.|+
T Consensus       240 ~G~~~~~-~~~~-~~~~~~~~~~-----~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~  301 (376)
T 3ezs_A          240 SGFIAGD-SRLL-EKYKAFRAYL-----G----YTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK  301 (376)
T ss_dssp             CEEEEEC-HHHH-HHHHHHHTTT-----C----CCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST
T ss_pred             eEEEeeC-HHHH-HHHHHHHhhh-----c----CCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence            8988763 2222 2221100000     0    12222222333333332  2234444  77778888888876

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.83  E-value=4e-20  Score=179.60  Aligned_cols=216  Identities=12%  Similarity=0.067  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHHH----
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEK----  169 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~-~~h~s~~~----  169 (369)
                      +++.+.+++++|.+.       .++   +++|++|+..++.++.++             +++|+++. +.|..+..    
T Consensus        62 ~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~~-------------GD~Vl~~~~~~y~~~~~~~~~  121 (409)
T 3jzl_A           62 DTLERVYATVFKTEA-------ALVRPQIISGTHAISTVLFGILRP-------------DDELLYITGQPYDTLEEIVGI  121 (409)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEETTSCSHHHHHHHHHHHHCCT-------------TCEEEECSSSCCTTHHHHHTS
T ss_pred             HHHHHHHHHHhCCCc-------EEEECCCccHHHHHHHHHHHhcCC-------------CCEEEEeCCCCcHhHHHHHhc
Confidence            344455999999975       455   889999999988876442             47899988 88888774    


Q ss_pred             ------HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee----CCCCcccCCCHHHHHHHHHH--hhhccCC
Q 017569          170 ------FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGW  237 (369)
Q Consensus       170 ------~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~l~~I~~l~~~--~~~~~~~  237 (369)
                            .++..|++++.+|++++ +.+|+++|+++++++|++|+++.    ++|++|.+.|+++|+++|++  +      
T Consensus       122 ~g~~~~~l~~~G~~~~~v~~~~~-g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~------  194 (409)
T 3jzl_A          122 RKQGQGSLKDFHIGYSSVPLLEN-GDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP------  194 (409)
T ss_dssp             SSSSSSCTGGGTCEEEECCCCTT-SCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------
T ss_pred             ccchhhHHHHcCCEEEEeCCCCC-CCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC------
Confidence                  44567999999998775 89999999999999999999999    99999999999999999999  8      


Q ss_pred             CceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCC--CeEEEEEeCCCCccccccc--ccCccCCCCCC
Q 017569          238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVF--HINYLGSDQPT  313 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~--~~~y~~~~~~~  313 (369)
                      ++++|+|++|+.+...   .+ +..   .++|.++.++||+++++.  ..|+++.+ ++.. +.+..  ...+++...  
T Consensus       195 ~~~livD~a~~~~~~~---~~-p~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li-~~l~~~~~~~~~g~~~--  263 (409)
T 3jzl_A          195 EVIVFVDNCYGEFVEY---QE-PPE---VGADIIAGSLIKNPGGGLAKTGGYIAGK-EALV-DLCGYRLTTPGIGREA--  263 (409)
T ss_dssp             TCEEEEECTTCTTTSS---CC-SGG---GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHH-HHHHHHHSCTTTGGGC--
T ss_pred             CCEEEEeCCccccccc---CC-ccc---cCCeEEEECccccCCccCCceEEEEEeC-HHHH-HHHHHHhccccccccc--
Confidence            9999999999865421   11 112   378999999999987653  24777764 3332 22211  111111100  


Q ss_pred             ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          314 FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       314 ~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                          +....    ..|..++.+..  ...+  +..++|+++++.|+++|+
T Consensus       264 ----g~~~~----~~~~~l~gl~~--~~~r~~~~~~~a~~la~~L~~~g~  303 (409)
T 3jzl_A          264 ----GASLY----SLLEMYQGFFL--APHVTAQAIKGARFTAAMLAEFGV  303 (409)
T ss_dssp             ----CCCTT----CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ----cccHH----HHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                11111    12333443322  2223  889999999999999987

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.83  E-value=2.1e-20  Score=177.62  Aligned_cols=255  Identities=13%  Similarity=0.031  Sum_probs=176.4

Q ss_pred             CChHHHHHHHHHHhccC--C--CCCCC---CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc-hHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN--Y--VDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS-SEAIMLAGLAFK  138 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n--~--~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg-t~a~~~al~~~~  138 (369)
                      ++++.+.+++.+++...  .  ..+..   +++..++.+++++++++++|++.    ...+++|+|+ ++|+..++.++.
T Consensus        13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~----~~~v~~~~g~gt~al~~~~~~l~   88 (360)
T 1w23_A           13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPN----DYQILFLQGGASLQFTMLPMNLL   88 (360)
T ss_dssp             CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT----TEEEEEESSHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCC----CceEEEECCcchHHHHHHHHHhc
Confidence            55678888888887542  1  11112   45667788899999999999962    1248899998 999988887764


Q ss_pred             HHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHH-HHhhcCcEEEEeeCCCCccc
Q 017569          139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       139 ~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~-~i~~~~~~v~~~~~~~~tG~  217 (369)
                      .+        |  ..++.|+++.++|+++. .++..| +++.+|++++++.+|+++|++ +++++|++|++++++||||.
T Consensus        89 ~~--------~--~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~  156 (360)
T 1w23_A           89 TK--------G--TIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT  156 (360)
T ss_dssp             CT--------T--CEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred             CC--------C--CcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence            31        1  11346888888887744 356779 999999975346689999999 88888999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|  +   +++++      ++++++|++|+.+..+       .++.  ..|.++.++||+++ |.|+|+++++++ .. 
T Consensus       157 ~~~--~---i~~~~------~~~li~D~a~~~~~~~-------~~~~--~~di~~~s~sK~~~-~~G~G~~~~~~~-~~-  213 (360)
T 1w23_A          157 QYQ--N---FPEIN------HAPLIADMSSDILSRP-------LKVN--QFGMIYAGAQKNLG-PSGVTVVIVKKD-LL-  213 (360)
T ss_dssp             ECS--S---CCCCC------SSCEEEECTTTTTSSC-------CCGG--GCSEEEEETTTTTS-CTTCEEEEEEHH-HH-
T ss_pred             ecc--c---ccccC------CceEEEechhhcCCCC-------cCcc--cCCEEEEEcccccC-CCCcEEEEEcHH-HH-
Confidence            855  2   33378      9999999999875432       1222  23889999999885 778999998753 21 


Q ss_pred             cccccccCc-cCCCC--CCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcC
Q 017569          298 DELVFHINY-LGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       298 ~~~~~~~~y-~~~~~--~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+.....+ .....  ......++.+....+++..+++.+..+ +++++  +..++++++.+.|++.|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  282 (360)
T 1w23_A          214 NTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN  282 (360)
T ss_dssp             CSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            111111111 10000  000111455555556677778777666 67776  89999999999999887

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.83  E-value=6.4e-20  Score=189.50  Aligned_cols=228  Identities=11%  Similarity=-0.072  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH-Hhhhcc
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFEV  176 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~-~~~~G~  176 (369)
                      .++++.+++++|.+.      ...+++|+++||..++.++..+             +++|+++.+.|.++..+ +++.|+
T Consensus       176 ~e~e~~lA~~~gae~------~i~v~nGtt~an~~ai~al~~p-------------GD~VLv~~~~H~S~~~~~~~l~Ga  236 (730)
T 1c4k_A          176 VAAEKHAARVYNADK------TYFVLGGSSNANNTVTSALVSN-------------GDLVLFDRNNHKSVYNSALAMAGG  236 (730)
T ss_dssp             HHHHHHHHHHTTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHCCCc------EEEECCHHHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHHHHHHHCCC
Confidence            456667999999974      2567778889999988887542             47999999999999988 889999


Q ss_pred             eeEEEeccCCc----cccCHHHH-----HHHHhhc------C----cEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCC
Q 017569          177 ELKEVKLEEGY----YVMNPVKA-----VELVDEN------T----ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW  237 (369)
Q Consensus       177 ~v~~v~~~~~~----~~~d~~~L-----~~~i~~~------~----~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~  237 (369)
                      .+++++.+.+.    +.+|+++|     +++|+++      +    ++|++++| |++|.+.|+++|+++|+++      
T Consensus       237 ~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~------  309 (730)
T 1c4k_A          237 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL------  309 (730)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG------
T ss_pred             EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc------
Confidence            99988875322    45788888     9998765      5    78889988 5899999999999999999      


Q ss_pred             CceEEeecccccccccccCCCc----cccccCCCCc----EEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCC
Q 017569          238 DTPIHVDAASGGFIAPFLYPDL----EWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS  309 (369)
Q Consensus       238 ~~~l~vD~a~~~~~~~~~~~~~----~~~~~~~~~D----si~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~  309 (369)
                      ++++|+|+||+.+..  +.+..    ..+....++|    +++.++||++.+|.++|+++++++....     ...+...
T Consensus       310 g~~livDeAh~~~~~--f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g-----~~~~i~~  382 (730)
T 1c4k_A          310 CDYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG-----QLRYCDH  382 (730)
T ss_dssp             BSEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT-----STTCCCH
T ss_pred             CCeEEEEcccccccc--cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC-----cccccCH
Confidence            999999999986432  12211    1222223677    9999999999888888999888753211     0000000


Q ss_pred             CC----CCccccCCcchhHHHHHHHHHHHhcH-hhHHHH-HhhHHHHHHHHHHHh
Q 017569          310 DQ----PTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF-CCVDHKKLSSFFVIH  358 (369)
Q Consensus       310 ~~----~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~-~~~~~a~~l~~~L~~  358 (369)
                      ..    ......+|.+....+++-+++..+.. .|...+ ++.+++++++++|++
T Consensus       383 ~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~  437 (730)
T 1c4k_A          383 KHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK  437 (730)
T ss_dssp             HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            00    00001145555556677778888876 455555 999999999999998

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.83  E-value=2.7e-19  Score=174.40  Aligned_cols=234  Identities=11%  Similarity=-0.037  Sum_probs=163.3

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      .+..++++++.+++.+.+|.+..- ....+++|+|+++++..++.+++++             +++|+++.++|..+...
T Consensus        83 ~g~~~lr~~la~~~~~~~g~~~~~-~~~~i~~~~G~~~ai~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~  148 (428)
T 1iay_A           83 HGLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGATGANETIIFCLADP-------------GDAFLVPSPYYPAFNRD  148 (428)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHHHHHHHHHHHHCCT-------------TCEEEEESSCCTTHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCC-ChhhEEEccChHHHHHHHHHHhCCC-------------CCeEEEccCCCcchHHH
Confidence            357899999999999888844100 1135899999999999998887542             46899999999998775


Q ss_pred             H-hhhcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCc
Q 017569          171 A-RYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDT  239 (369)
Q Consensus       171 ~-~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~  239 (369)
                      + ...|++++.+|+++ +++.+|+++|++++++      ++++|+++.|+||||.+.|   +++|+++|+++      ++
T Consensus       149 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~  222 (428)
T 1iay_A          149 LRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH------NI  222 (428)
T ss_dssp             TTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT------TC
T ss_pred             HHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC------Ce
Confidence            5 47899999999864 3478999999999975      6788999999999999988   99999999999      99


Q ss_pred             eEEeecccccccccccCCCc-c-ccccCC------CCc--EEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccC
Q 017569          240 PIHVDAASGGFIAPFLYPDL-E-WDFRLP------LVK--SINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLG  308 (369)
Q Consensus       240 ~l~vD~a~~~~~~~~~~~~~-~-~~~~~~------~~D--si~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~  308 (369)
                      ++|+|++|+++.+  ..... . ..+...      ..|  .+..++||+++ .+.+.|++++.+++.. ..+.....+  
T Consensus       223 ~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~-~~~~~~~~~--  297 (428)
T 1iay_A          223 HLVCDEIYAATVF--DTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV-NCARKMSSF--  297 (428)
T ss_dssp             EEEEECTTGGGCC--SSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHH-HHHHHHHTT--
T ss_pred             EEEEecccccccc--CCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHH-HHHHHHHhc--
Confidence            9999999987543  11110 0 111111      157  67889999985 4456799988543332 222111000  


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHHHhcHh-----hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          309 SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-----VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       309 ~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-----G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                               ++-   ..+.+.++...+...     .++++  +..++.+++.+.|++.|+
T Consensus       298 ---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  345 (428)
T 1iay_A          298 ---------GLV---STQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGI  345 (428)
T ss_dssp             ---------SCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---------ccC---CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                     111   123334444444322     34444  778899999999988753

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.82  E-value=6.9e-19  Score=167.81  Aligned_cols=252  Identities=11%  Similarity=0.035  Sum_probs=171.7

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+...+. .+++.+.+++.+.++.. ..|. .++..+++++    +++++|.++     ...++|+|+++++.+++.+
T Consensus        27 idl~~~~~~~~~~~~v~~a~~~~~~~~-~~y~-~~~~~~l~~~----la~~~~~~~-----~~v~~~~g~~~al~~~~~~   95 (364)
T 1lc5_A           27 LDFSANINPLGMPVSVKRALIDNLDCI-ERYP-DADYFHLHQA----LARHHQVPA-----SWILAGNGETESIFTVASG   95 (364)
T ss_dssp             EECSSCCCTTCCCHHHHHHHHHTGGGG-GSCC-CTTCHHHHHH----HHHHHTSCG-----GGEEEESSHHHHHHHHHHH
T ss_pred             EEeccccCCCCCCHHHHHHHHHHHHHh-hcCC-CCCHHHHHHH----HHHHHCcCH-----HHEEECCCHHHHHHHHHHH
Confidence            444444332 34577888888877542 2222 2345555555    777778764     2489999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      +  +             +++|+++.++|..+...++..|++++.+|+++ +++.+ ++++.+.+++++++|+++.|+|||
T Consensus        96 ~--~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~npt  159 (364)
T 1lc5_A           96 L--K-------------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPT  159 (364)
T ss_dssp             H--C-------------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTT
T ss_pred             c--C-------------CCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCC
Confidence            6  2             36899999999999999999999999999875 23443 566666676788999999999999


Q ss_pred             ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEE
Q 017569          216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       216 G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~  290 (369)
                      |.+.|   +++|+++|+++      ++++|+|++|+.+...   ....... ...+.+.+..++||+++ .+.++|++++
T Consensus       160 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  230 (364)
T 1lc5_A          160 GLLPERPLLQAIADRCKSL------NINLILDEAFIDFIPH---ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVN  230 (364)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGSTT---CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHhhhc------CcEEEEECcChhhccC---ccchhhHhccCCCEEEEEECchhhcCCccceEEEEE
Confidence            99987   99999999999      9999999999875431   1111121 23356788889999986 3456798883


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .+++.. +.+....       ..    ++.   ..+.++++...+.. +.++++  +..++.+++.+.|++.+
T Consensus       231 ~~~~~~-~~l~~~~-------~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  288 (364)
T 1lc5_A          231 SDDAAM-ARMRRQQ-------MP----WSV---NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLP  288 (364)
T ss_dssp             CCHHHH-HHHHHHS-------CT----TCS---CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             CCHHHH-HHHHHhC-------CC----CCC---CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            333222 2221100       01    111   24455555555543 345555  67788899999998763

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.82  E-value=1.8e-18  Score=169.64  Aligned_cols=285  Identities=12%  Similarity=0.018  Sum_probs=183.8

Q ss_pred             HHHHHHHHHhhhhc-CCCCccccccccCC-ChHHHHHHHHHHhcc-----CCCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 017569           40 EAAYQVINDELMLD-GNPRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        40 ~~i~~~l~~~~~~~-~~p~~~l~~~~~~~-~~~~v~~~~~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      +++.+........+ +...++|+.+.+.. .++.+.+++.+++..     ....|....+..++++++.+++.  .|.+.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~  130 (449)
T 3qgu_A           53 PEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGR  130 (449)
T ss_dssp             HHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCC
Confidence            34444444433323 34456777665543 467788888877763     33344444678889988877776  55543


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce----------eEEEe
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE----------LKEVK  182 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~----------v~~v~  182 (369)
                      +   ....++|+|+++++..+ .++..+             ++.|+++.++|.++...++..|.+          ++.+|
T Consensus       131 ~---~~~i~~t~G~~~al~~~-~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~  193 (449)
T 3qgu_A          131 A---ADEIFISDGSKCDIARI-QMMFGS-------------KPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV  193 (449)
T ss_dssp             C---GGGEEEESCHHHHHHHH-HHHHCS-------------SSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEE
T ss_pred             C---HHHEEEccCHHHHHHHH-HHHhCC-------------CCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEe
Confidence            2   24689999999999876 554331             468999999999999999999998          99999


Q ss_pred             ccCC-ccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCC
Q 017569          183 LEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD  258 (369)
Q Consensus       183 ~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~  258 (369)
                      ++++ .+..|++++     +++++|+++.|+||||.+-+   +++|+++|+++      ++++++|++|+++...--.+.
T Consensus       194 ~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~------~~~li~Dea~~~~~~~~~~~~  262 (449)
T 3qgu_A          194 CNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN------GSILVYDAAYALYISNPDCPK  262 (449)
T ss_dssp             CCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCCTTSCS
T ss_pred             cccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchHhhhcCCCCCC
Confidence            8753 355565332     57899999999999999854   88899999999      999999999998554100010


Q ss_pred             cccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCccc-ccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh
Q 017569          259 LEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPD-ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL  335 (369)
Q Consensus       259 ~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~-~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l  335 (369)
                      .-..+. ....+.+..+++|+++ .+.++|+++.+++ .... .......+...  ..    .+-.+...+.+.+++..+
T Consensus       263 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~a~~~~l  335 (449)
T 3qgu_A          263 TIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRV--MT----TCFNGASNIVQAGGLACL  335 (449)
T ss_dssp             SGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHH--HH----HSCCCCCHHHHHHHHHHT
T ss_pred             CHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHH--hh----cccCCCCHHHHHHHHHHH
Confidence            011111 1345677888999986 6678899987543 3211 00000000000  00    000011244555555555


Q ss_pred             cH---hhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          336 GF---EVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       336 g~---~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..   +.+.++  +..++.+++.+.|++.|+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  366 (449)
T 3qgu_A          336 QPEGLKEMNAMIKFYKENAQILKTTFTEMGF  366 (449)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            44   334455  788999999999998764

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.82  E-value=1.5e-18  Score=163.24  Aligned_cols=238  Identities=12%  Similarity=0.043  Sum_probs=166.9

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.+.+... ..| ..++..++++    .+++++|+++     ...++|+|+++++.+++.++  +      
T Consensus        29 ~~~~~v~~a~~~~~~~~-~~y-~~~~~~~lr~----~la~~~~~~~-----~~i~~t~G~~~~l~~~~~~~--~------   89 (337)
T 3p1t_A           29 AVEPRVQAAIAAAAARI-NRY-PFDAEPRVMR----KLAEHFSCPE-----DNLMLVRGIDECFDRISAEF--S------   89 (337)
T ss_dssp             CCCHHHHHHHHHHGGGT-TSC-CTTHHHHHHH----HHHHHHTSCG-----GGEEEESHHHHHHHHHHHHS--T------
T ss_pred             CCCHHHHHHHHHhhhhh-ccC-CCCchHHHHH----HHHHHhCcCH-----HHEEEeCCHHHHHHHHHHhc--C------
Confidence            45688888888877542 222 2345555554    4788888875     34899999999998888775  2      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~  226 (369)
                             +++|+++.++|.++...++..|++++.+|++++ +.+|+++|+++  .++++|++++|+||||.+.|+++|.+
T Consensus        90 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~  159 (337)
T 3p1t_A           90 -------SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD-LLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQ  159 (337)
T ss_dssp             -------TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT-SSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             -------CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence                   478999999999999999999999999999864 89999999887  46889999999999999999999999


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccC
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHIN  305 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~  305 (369)
                      +|+++      ++ +++|++|+.+..  . .  .........+.+..+.+|+++ .+.+.|+++..+ +.. ..+.. . 
T Consensus       160 l~~~~------~~-~ivDea~~~~~~--~-~--~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~-~~l~~-~-  223 (337)
T 3p1t_A          160 LRQRA------GK-LLIDETYVDYSS--F-R--ARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS-ELI-AAMKR-K-  223 (337)
T ss_dssp             HHHHC------SE-EEEECTTGGGSS--C-S--SSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HHH-HHHHT-T-
T ss_pred             HHHhC------Cc-EEEECCChhhcc--c-c--ccccccCCCEEEEeeCchhccCcchheEEEEeCH-HHH-HHHHh-h-
Confidence            99999      87 566999986432  1 1  111223356778888999985 567789887643 221 12111 0 


Q ss_pred             ccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       306 y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                        .   ..    ++.+.   +.+.+....+.. +.+.+.  +..++.+++.+.|++.|+
T Consensus       224 --~---~~----~~~~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  270 (337)
T 3p1t_A          224 --Q---WF----CNVGT---LDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGY  270 (337)
T ss_dssp             --S---CT----TCSCH---HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --c---CC----CCCCH---HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence              0   00    12222   233333333322 234444  677788899999988763

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.82  E-value=1.1e-19  Score=176.61  Aligned_cols=212  Identities=12%  Similarity=-0.039  Sum_probs=151.1

Q ss_pred             CCcccccccc------CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVT------TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~------~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      ..++|+.+.+      .++++.+.+++.+..+.....|....+..++++++.+++.+..+.+.    ...+++|+||++|
T Consensus        39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~----~~~i~~t~g~~~a  114 (418)
T 3rq1_A           39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG----HIRSIATAGGTGG  114 (418)
T ss_dssp             GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHHH
T ss_pred             CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc----cccEEECCchHHH
Confidence            4456666643      23456777777665443334455566789999998888877766441    1248999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCc-
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI-  204 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~-  204 (369)
                      +..++.++.++             +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++    +++ 
T Consensus       115 l~~~~~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~  181 (418)
T 3rq1_A          115 IHHLIHNYTEP-------------GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNV  181 (418)
T ss_dssp             HHHHHHHHSCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEE
T ss_pred             HHHHHHHhcCC-------------CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCE
Confidence            99998887542             479999999999999999999999999999654489999999999986    666 


Q ss_pred             EEEEeeC-CCCcccCCCHHH---HHHHHH------HhhhccCCCceEEeecccccccccccC-CCccccccCCCCc---E
Q 017569          205 CVAAILG-STLTGEFEDVKL---LHDLLT------KKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDFRLPLVK---S  270 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~~~l~~---I~~l~~------~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~~~~~D---s  270 (369)
                      ++++++| +||||.+.+.++   |+++|+      ++      ++++++|++|.++...-.. ...........-|   .
T Consensus       182 ~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i  255 (418)
T 3rq1_A          182 VVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN------NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTC  255 (418)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC------EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEE
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC------CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEE
Confidence            7888889 999999977555   555555      77      9999999999765431000 0000011111123   4


Q ss_pred             EEEcCccCCC-CCCCeEEEEE
Q 017569          271 INVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       271 i~~~~hK~l~-~p~g~g~l~~  290 (369)
                      ++.+.+|.++ .+.+.|+++.
T Consensus       256 ~~~S~sK~~~~~G~r~G~~~~  276 (418)
T 3rq1_A          256 VCYSLSKGFTMYGQRVGAMIG  276 (418)
T ss_dssp             EEEESTTTTTCCSSCCEEEEE
T ss_pred             EEEeCCCCCcCcCCcceEEEE
Confidence            5568999875 5577899886

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.82  E-value=1.8e-19  Score=176.22  Aligned_cols=222  Identities=14%  Similarity=0.014  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF  174 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~~  174 (369)
                      ++++++++++|.+.       .+++++|++|+..++.++..+             +++|+++.+.|.++..    .+...
T Consensus        86 ~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~~~~  145 (430)
T 3ri6_A           86 DLEQRLKNLTGALG-------VLALGSGMAAISTAILTLARA-------------GDSVVTTDRLFGHTLSLFQKTLPSF  145 (430)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHHHHc
Confidence            44455889999874       678888899999888877432             4789999999988776    66678


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |++++.+|.+      |+++|+++++++|++|++++|+||+|.+.|+++|+++|+++      ++++|+|++|+.+..  
T Consensus       146 G~~~~~v~~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~------g~~livD~a~~~~~~--  211 (430)
T 3ri6_A          146 GIEVRFVDVM------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK------GIPLVVDTTMTPPYL--  211 (430)
T ss_dssp             TCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTT------TCCEEEECTTSCTTT--
T ss_pred             CCEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence            9999988865      79999999999999999999999999999999999999999      999999999985443  


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCC--CeEEEEEeCCCCccc--cccc------ccCccCCCCCCc-cccCCcchh
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPD--ELVF------HINYLGSDQPTF-TLNFSKGSS  323 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~--g~g~l~~~~~~~~~~--~~~~------~~~y~~~~~~~~-~l~~tr~~~  323 (369)
                      ..+   .   ..++|.++.+++|++++|.  -.|+++.+.......  .+..      ...+........ ...|..  .
T Consensus       212 ~~~---~---~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~--~  283 (430)
T 3ri6_A          212 LEA---K---RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS--L  283 (430)
T ss_dssp             CCG---G---GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC--C
T ss_pred             CCh---H---HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC--C
Confidence            111   1   2378999999999997662  346666544322210  0000      000000000000 000111  1


Q ss_pred             HHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          324 QIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      ..+.+|..++.+  +.+..+  +..++|+++++.|++.+.+++
T Consensus       284 ~~~~a~l~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~  324 (430)
T 3ri6_A          284 SPHNAYLQSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKC  324 (430)
T ss_dssp             CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred             CHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccE
Confidence            245566655543  344444  889999999999998877664

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.82  E-value=1.9e-19  Score=175.41  Aligned_cols=211  Identities=13%  Similarity=-0.000  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----hh
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RY  173 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~----~~  173 (369)
                      +++++.+++++|.+.       .++++||++|+.+++.++..+             +++|+++.+.|.+....+    +.
T Consensus        85 ~~le~~lA~l~g~~~-------~i~~ssGt~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~l~~  144 (415)
T 2fq6_A           85 FSLQQAMCELEGGAG-------CVLFPCGAAAVANSILAFIEQ-------------GDHVLMTNTAYEPSQDFCSKILSK  144 (415)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEETTSCHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHH
Confidence            345555889999863       677899999999888875331             478999999998766543    45


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH--hhhccCCCceEEeeccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~--~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      .|+++++++.+      |+++|+++|+++|++|++.+++||+|.+.|+++|+++|++  +      ++++|+|++|+.+.
T Consensus       145 ~G~~v~~v~~~------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~------g~~livD~a~a~~~  212 (415)
T 2fq6_A          145 LGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP------DAIIMIDNTWAAGV  212 (415)
T ss_dssp             GTCEEEEECTT------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT------TCEEEEECTTTTTT
T ss_pred             cCcEEEEECCC------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcC------CCEEEEECCCcccc
Confidence            68888888753      6889999999999999999999999999999999999999  9      99999999998543


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      .  ..   +..   .++|.++.++||+++++.+  .|+++.++ +.. +.+.......          |+..  .....|
T Consensus       213 ~--~~---p~~---~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~-~~l~~~~~~~----------G~~~--~~~~a~  270 (415)
T 2fq6_A          213 L--FK---ALD---FGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCW-EQLRENAYLM----------GQMV--DADTAY  270 (415)
T ss_dssp             S--SC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECT-TTH-HHHHHHHHHT----------TCCC--CHHHHH
T ss_pred             c--CC---ccc---cCCeEEEEeCccccCCCCCceEEEEEeCH-HHH-HHHHHHHHhc----------CCCC--CHHHHH
Confidence            2  11   122   3789999999999976654  58887754 332 2221110111          1111  133445


Q ss_pred             HHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          330 YQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       330 ~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      ..++.+  +.+..+  +..+++++++++|++.+.+++
T Consensus       271 ~~~~~l--~~l~~r~~~~~~n~~~l~~~L~~~~~v~~  305 (415)
T 2fq6_A          271 ITSRGL--RTLGVRLRQHHESSLKVAEWLAEHPQVAR  305 (415)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HHHhhh--hHHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence            544443  233333  778899999999998765543

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.82  E-value=1.8e-19  Score=173.49  Aligned_cols=203  Identities=11%  Similarity=-0.027  Sum_probs=147.3

Q ss_pred             hHHHHHHHHH-HhccC-CCCCCCCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        69 ~~~v~~~~~~-~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ++.+.+++.+ +++.. ...|....+..++++++.+++.+..+.  +++   ....++|+||++|+.+++.....-    
T Consensus        46 ~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~---~~~i~~t~g~~~a~~~~~~~~~~~----  118 (397)
T 3fsl_A           46 LQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQ---RVATIQTLGGSGALKVGADFLKRY----  118 (397)
T ss_dssp             CHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT---CEEEEEESHHHHHHHHHHHHHHHH----
T ss_pred             cHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccccc---ceEEEEcCCcHHHHHHHHHHHHhc----
Confidence            4788999888 88653 344555567888988877777654442  221   014899999999999886543211    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHh---hcCcEEEEeeCCCCcccC--
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF--  218 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~--  218 (369)
                             ..+++|+++.++|..+...++..|++++.+|+. ++++.+|+++|+++++   ++++++++++++||||.+  
T Consensus       119 -------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~  191 (397)
T 3fsl_A          119 -------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLT  191 (397)
T ss_dssp             -------CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCC
T ss_pred             -------CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCC
Confidence                   014689999999999999999999999999983 3458999999999998   567888999999999999  


Q ss_pred             -CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       219 -~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                       +++++|+++|+++      ++++|+|++|+.+....-.+... ..+ ....-..+..+.+|.++ .+.+.|++++.
T Consensus       192 ~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~  262 (397)
T 3fsl_A          192 NDQWDAVIEILKAR------ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM  262 (397)
T ss_dssp             HHHHHHHHHHHHHT------TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             HHHHHHHHHHHHhC------CEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence             5577999999999      99999999998765310000000 011 12233455667889986 45668998763

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.82  E-value=1.4e-19  Score=174.68  Aligned_cols=255  Identities=14%  Similarity=0.003  Sum_probs=171.2

Q ss_pred             ccccccccC---CChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           58 LNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        58 ~~l~~~~~~---~~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++|..+.+.   .+++.+.+++.++++.+   ...|...++..+++++    +++++|.++     ..+++|+|+++|+.
T Consensus        35 i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~-----~~v~~~~g~~~al~  105 (397)
T 2zyj_A           35 LSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRP-----EEVLITTGSQQALD  105 (397)
T ss_dssp             EEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHHH
T ss_pred             eecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hhEEEeccHHHHHH
Confidence            455554443   24577888888777542   2344444566777777    555557654     34899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEE-EEe
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICV-AAI  209 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v-~~~  209 (369)
                      .++.++.++             +++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ ++++| +++
T Consensus       106 ~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~-~d~~~l~~~l~~~~~~~v~~~~  170 (397)
T 2zyj_A          106 LVGKVFLDE-------------GSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-G-PDLDALEEVLKRERPRFLYLIP  170 (397)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHCCCSCEEECC
T ss_pred             HHHHHhCCC-------------CCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-C-CCHHHHHHHHhhcCCeEEEECC
Confidence            988887432             468999999999999999999999999999764 4 999999999987 78887 578


Q ss_pred             eCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C--C---CCcEEEEcCccCCC
Q 017569          210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L--P---LVKSINVSGHKYGL  280 (369)
Q Consensus       210 ~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~--~---~~Dsi~~~~hK~l~  280 (369)
                      .++||||.+.|   +++|+++|+++      ++++++|++|+.+...   ......+. .  .   .-..+..++||+++
T Consensus       171 ~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~  241 (397)
T 2zyj_A          171 SFQNPTGGLTPLPARKRLLQMVMER------GLVVVEDDAYRELYFG---EARLPSLFELAREAGYPGVIYLGSFSKVLS  241 (397)
T ss_dssp             BSCTTTCCBCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBCS---SCCCCCHHHHHHHHTCCCEEEEEESTTTTC
T ss_pred             CCcCCCCCcCCHHHHHHHHHHHHHc------CCEEEEeCCcccccCC---CCCCCchhhhCcccCCCeEEEEeccccccc
Confidence            99999999866   45899999999      9999999999875431   11111111 1  1   22366778999998


Q ss_pred             CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH---hhHHHH--HhhHHHHHHHHH
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF---EVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~---~G~~~~--~~~~~a~~l~~~  355 (369)
                      .+.++|++++++ +.. +.+......       ++. ++ +   .+.++++...+..   +.++++  +..++.+++.+.
T Consensus       242 ~G~r~G~~~~~~-~~~-~~l~~~~~~-------~~~-~~-~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  307 (397)
T 2zyj_A          242 PGLRVAFAVAHP-EAL-QKLVQAKQG-------ADL-HT-P---MLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA  307 (397)
T ss_dssp             GGGCCEEEECCH-HHH-HHHHHHHHH-------HHS-SC-C---HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEecCH-HHH-HHHHHHHHh-------hcC-CC-C---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            446789998753 222 222110000       000 11 1   2333344444432   335554  677888899999


Q ss_pred             HHhc
Q 017569          356 VIHS  359 (369)
Q Consensus       356 L~~~  359 (369)
                      |++.
T Consensus       308 L~~~  311 (397)
T 2zyj_A          308 LDRE  311 (397)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.82  E-value=1.7e-19  Score=175.93  Aligned_cols=216  Identities=18%  Similarity=0.096  Sum_probs=153.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHH------
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE------  168 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~-~~h~s~~------  168 (369)
                      ++.+.+++++|.+.       .++   +++|++||..++.++.++             +++|+++. +.|..+.      
T Consensus        77 ~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g~~  136 (427)
T 3i16_A           77 SLDAVYARVFNTES-------ALVRPHFVNGTHALGAALFGNLRP-------------GNTMLSVCGEPYDTLHDVIGIT  136 (427)
T ss_dssp             HHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHHCCT-------------TCEEEESSSSCCGGGHHHHTCS
T ss_pred             HHHHHHHHHhCCcc-------eEEeCCCccHHHHHHHHHHHHhCC-------------CCEEEEeCCCccHHHHHHHhcc
Confidence            34455999999975       466   889999999888876542             47899998 8887655      


Q ss_pred             -----HHHhhhcceeEEEeccCCccccCHHHHHHHHh--hcCcEEEEee----CCCCcccCCCHHHHHHHHHH--hhhcc
Q 017569          169 -----KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEET  235 (369)
Q Consensus       169 -----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~----~~~~tG~~~~l~~I~~l~~~--~~~~~  235 (369)
                           ..++..|++++.+|++++ +.+|+++|+++++  ++|++|+++.    |+||+|.+.|+++|+++|++  +    
T Consensus       137 ~~~~~~~l~~~G~~~~~v~~~~~-g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~----  211 (427)
T 3i16_A          137 ENSNMGSLKEFGINYKQVDLKED-GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK----  211 (427)
T ss_dssp             CCCSSCCTGGGTCEEEECCCCTT-SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT----
T ss_pred             ccchHHHHHHcCCEEEEecCccC-CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC----
Confidence                 345667999999998765 7999999999999  7899999999    99999999999999999999  8    


Q ss_pred             CCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC--CCeEEEEEeCCCCccccccc--ccCccCCCC
Q 017569          236 GWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVF--HINYLGSDQ  311 (369)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p--~g~g~l~~~~~~~~~~~~~~--~~~y~~~~~  311 (369)
                        ++++++|++|+.+..   ... +..   .++|.++.++||+++++  ...|+++.+ +++. +.+..  ....++.. 
T Consensus       212 --g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li-~~l~~~~~~~~~g~~-  279 (427)
T 3i16_A          212 --DIICFVDNCYGEFMD---TKE-PTD---VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCI-EKTSYRLTVPGIGGE-  279 (427)
T ss_dssp             --TSEEEEECTTTTTSS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHH-HHHHHHHSCTTTGGG-
T ss_pred             --CCEEEEECCCccccc---cCC-ccc---cCCeEEEecCcccCCCCCCceEEEEEEC-HHHH-HHHHHhcccCccCcc-
Confidence              999999999986542   111 112   37899999999998663  334887764 3232 22211  11111110 


Q ss_pred             CCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          312 PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       312 ~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                            .+....   ..|..++.+.... ..+ +..++|.++++.|+++|+
T Consensus       280 ------~~~~~~---~a~~~l~gl~~~~-~r~~~~~~~a~~la~~L~~~g~  320 (427)
T 3i16_A          280 ------CGSTFG---VVRSMYQGLFLAP-HISMEALKGAILCSRIMELAGF  320 (427)
T ss_dssp             ------CCCCTT---CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ------CCccHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence                  011010   1345554443222 122 899999999999999987

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.82  E-value=9.7e-19  Score=171.64  Aligned_cols=211  Identities=9%  Similarity=-0.094  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HH
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FA  171 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~  171 (369)
                      ...++++++++++|.+.       .+++++|++|+.+++.++.++             +++|+++.+.|.++..    .+
T Consensus       115 ~~~~l~~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~  174 (445)
T 1qgn_A          115 TTVVLEEKISALEGAES-------TLLMASGMCASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETIL  174 (445)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSCS-------------SCEEEEETTSCHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHH
Confidence            34456667899999863       566677779999998876431             4689999999987665    35


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcC-cEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENT-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF  250 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~-~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~  250 (369)
                      +..|++++++|.+      |+++|+++|+++| ++|++++++||+|.+.|+++|+++|+++      ++++|+|++|+.+
T Consensus       175 ~~~G~~v~~v~~~------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~------g~~livD~a~~~~  242 (445)
T 1qgn_A          175 PKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDGTFATP  242 (445)
T ss_dssp             GGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCT
T ss_pred             HHcCCEEEEeCCC------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccc
Confidence            6679999888764      7999999999999 9999999999999999999999999999      9999999999854


Q ss_pred             cccccCCCccccccCCCCcEEEEcCccCCCCCC--CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHH
Q 017569          251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ  328 (369)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~  328 (369)
                      ..  ..+   .   ..++|.++.++||+++++.  ..|+++.++ +.. ..+.......          |+.  ...+..
T Consensus       243 ~~--~~~---~---~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~-~~l~~~~~~~----------g~~--~~~~~a  300 (445)
T 1qgn_A          243 LN--QKA---L---ALGADLVLHSATKFLGGHNDVLAGCISGPL-KLV-SEIRNLHHIL----------GGA--LNPNAA  300 (445)
T ss_dssp             TT--CCT---T---TTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHH-HHHHHHHHHH----------CCC--CCHHHH
T ss_pred             cc--CCc---c---ccCCEEEEECCcccccccccceEEEEEECH-HHH-HHHHHHHHHh----------CCC--CCHHHH
Confidence            32  111   1   2378999999999986443  278888754 222 1211100001          111  123445


Q ss_pred             HHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          329 YYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       329 ~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      |..++.+.  .+..+  +..+++++++++|++.+.+
T Consensus       301 ~~~~~~l~--~l~~r~~~~~~~a~~l~~~L~~~p~v  334 (445)
T 1qgn_A          301 YLIIRGMK--TLHLRVQQQNSTALRMAEILEAHPKV  334 (445)
T ss_dssp             HHHHHHGG--GHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             HHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            66555553  23333  7778899999999988755

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.81  E-value=4e-20  Score=174.93  Aligned_cols=185  Identities=15%  Similarity=0.088  Sum_probs=131.0

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      ..++++.+.+++.++.... ..|...++..+++    +++++++|.+.       .++++||++|+.+++.++.++    
T Consensus        13 ~~~p~~~~~~a~~~~~~~~-~~y~~~~~~~~l~----~~la~~~g~~~-------~~~~~~gt~a~~~~~~~~~~~----   76 (347)
T 1jg8_A           13 VTKPTEEMRKAMAQAEVGD-DVYGEDPTINELE----RLAAETFGKEA-------ALFVPSGTMGNQVSIMAHTQR----   76 (347)
T ss_dssp             GCCCCHHHHHHHHTCCCCC-GGGTCCHHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHHhcCCCCC-cccCCChHHHHHH----HHHHHHhCCce-------EEEecCcHHHHHHHHHHhcCC----
Confidence            3345577777776553221 1233445555555    45888888864       788999999998887765331    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHH---HHhhhcceeEEEeccCCccccCHHHHHHHHhh------cCcEEEEeeCCCCc
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLT  215 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~t  215 (369)
                               +++|+++.++|.+...   .+...|++++.+ .++ ++.+|+++|++++++      ++++|++++++|||
T Consensus        77 ---------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt  145 (347)
T 1jg8_A           77 ---------GDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRS  145 (347)
T ss_dssp             ---------TCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTT
T ss_pred             ---------CCEEEEcCcchhhhccccchhhccCeEEEEe-cCC-CCccCHHHHHHHhccccccccCceEEEEecccccc
Confidence                     4789999999976543   566789998888 444 478999999999975      68899999999999


Q ss_pred             -ccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC
Q 017569          216 -GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG  284 (369)
Q Consensus       216 -G~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g  284 (369)
                       |.+.|   +++|+++|+++      ++++|+|++|..+...+. +.....+ ..++|.+++++||++++|.|
T Consensus       146 ~G~~~~~~~l~~i~~~a~~~------~~~li~D~a~~~~~~~~~-~~~~~~~-~~~~d~~~~s~sK~l~~~~G  210 (347)
T 1jg8_A          146 GGRVVPLENIKEICTIAKEH------GINVHIDGARIFNASIAS-GVPVKEY-AGYADSVMFCLSKGLCAPVG  210 (347)
T ss_dssp             TSBCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHH-CCCHHHH-HHTCSEEEEESSSTTCCSSC
T ss_pred             CCccCcHHHHHHHHHHHHHC------CCEEEeehhhhhcchhhc-CCChHHh-cccccEEEEecccccCCCce
Confidence             99855   57899999999      999999998743211111 1001111 13678889999999987754

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.81  E-value=5.9e-19  Score=171.22  Aligned_cols=253  Identities=10%  Similarity=0.001  Sum_probs=158.8

Q ss_pred             ChHHHHHHHHHHhccCC-CCCC---CCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNY-VDMD---EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~-~~~~---~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.+.+++.+.+.... ..+.   .++   ....+++..++++++++|.+.      ..++++||++|+..++.++..+
T Consensus        44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~v~~~~Gs~a~~~al~~~~~~  117 (425)
T 3ecd_A           44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH------ANVQPHSGAQANGAVMLALAKP  117 (425)
T ss_dssp             CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC------ceeecCchHHHHHHHHHHccCC
Confidence            36888888888774321 1111   111   122556556688999999875      1345889999999888877432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcch-HHHHH--hhhcce--eEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCC
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVC-WEKFA--RYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL  214 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s-~~~~~--~~~G~~--v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~  214 (369)
                                   +++|+++.++|.+ +...+  ...|..  ++.++++++++.+|+++|+++++ +++++|+++.++| 
T Consensus       118 -------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~-  183 (425)
T 3ecd_A          118 -------------GDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY-  183 (425)
T ss_dssp             -------------TCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC-
T ss_pred             -------------CCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC-
Confidence                         4789999999987 22222  245654  44555555558999999999997 5899999887776 


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD  294 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~  294 (369)
                       |...++++|.++|+++      |+++|+|++|..+..  ..+.....  ...+|.++.++||++.+|. .|+++.+++.
T Consensus       184 -~~~~~l~~i~~l~~~~------~~~li~De~~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~~-~g~~~~~~~~  251 (425)
T 3ecd_A          184 -PRKLDFARFRAIADSV------GAKLMVDMAHIAGVI--AAGRHANP--VEHAHVVTSTTHKTLRGPR-GGFVLTNDEE  251 (425)
T ss_dssp             -CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSGGGCCCS-CEEEEESCHH
T ss_pred             -CCcCCHHHHHHHHHHc------CCEEEEECcChHhhh--hcccccCc--hhcCcEEEecCCcccCCCC-cEEEEeCCHH
Confidence             5789999999999999      999999999654433  11111111  2247899999999996665 5888775432


Q ss_pred             CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       295 ~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .. ..+.. ..+.+       ..++.......+++.++.....+++.++  +..++++++++.|.+.|+
T Consensus       252 ~~-~~~~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  311 (425)
T 3ecd_A          252 IA-KKINS-AVFPG-------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGV  311 (425)
T ss_dssp             HH-HHHHH-HHC------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HH-HHHHh-hhCcc-------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            21 11111 00110       1123333345566666666666677666  889999999999998764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.81  E-value=6.1e-19  Score=170.90  Aligned_cols=283  Identities=10%  Similarity=-0.006  Sum_probs=176.5

Q ss_pred             CCCCcccccccc------CCChHHHHHHHHHHhcc--CCCCCCCCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEE-
Q 017569           54 GNPRLNLASFVT------TWMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG-  122 (369)
Q Consensus        54 ~~p~~~l~~~~~------~~~~~~v~~~~~~~~~~--n~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~-  122 (369)
                      +...++|+.+.+      .++++.+.+++.+.+..  ....|....+..++++++.+++....|.  ++     ..+++ 
T Consensus        29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~~  103 (412)
T 1ajs_A           29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQE-----KRVGGV  103 (412)
T ss_dssp             CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEE
T ss_pred             CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCC-----CcEEEE
Confidence            334456666553      23447788888887722  3344545567788888877766544333  22     24788 


Q ss_pred             -eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce-eEEEecc-CCccccCHHHHHHHH
Q 017569          123 -TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLE-EGYYVMNPVKAVELV  199 (369)
Q Consensus       123 -t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~-v~~v~~~-~~~~~~d~~~L~~~i  199 (369)
                       |+||++|+.+++..+... .     +|.....++|+++.++|..+...++..|++ ++.+|++ ++++.+|+++|++++
T Consensus       104 ~t~gg~~a~~~~~~~~~~~-~-----~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l  177 (412)
T 1ajs_A          104 QSLGGTGALRIGAEFLARW-Y-----NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDL  177 (412)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-S-----SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHHHh-C-----cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHH
Confidence             999999999886544321 0     110001168999999999999999999999 9999984 245899999999999


Q ss_pred             hh---cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeeccccccccccc-CCCcccc-cc-CCCCcE
Q 017569          200 DE---NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD-FR-LPLVKS  270 (369)
Q Consensus       200 ~~---~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~-~~-~~~~Ds  270 (369)
                      ++   ++++++++.|+||||.+.   ++++|+++|+++      ++++|+|++|.++...-. .+..... +. ...-..
T Consensus       178 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (412)
T 1ajs_A          178 ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELF  251 (412)
T ss_dssp             HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcccccccCCcccccchHHHHHhccCCcEE
Confidence            86   667888899999999984   577899999999      999999999886543100 0000111 11 112236


Q ss_pred             EEEcCccCCCC-CCCeEEEEEe--CCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhc-----HhhHH
Q 017569          271 INVSGHKYGLV-YAGVGWVVWR--TKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-----FEVIP  341 (369)
Q Consensus       271 i~~~~hK~l~~-p~g~g~l~~~--~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg-----~~G~~  341 (369)
                      +..+.+|.++. +.+.|++++.  +++.. ..+.... .+...   .+   .+-+.....++..+|+...     .+.++
T Consensus       252 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~~~~~~~~~~~~~---~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1ajs_A          252 CAQSFSKNFGLYNERVGNLTVVAKEPDSI-LRVLSQMQKIVRV---TW---SNPPAQGARIVARTLSDPELFHEWTGNVK  324 (412)
T ss_dssp             EEEECTTTSCCGGGCEEEEEEECSSHHHH-HHHHHHHHHHHHT---TT---SSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             EEEecccccCCCCcceEEEEEecCCHHHH-HHHHHHHHHHHhc---cc---CCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence            67789998754 4558999882  33211 0110000 00000   00   0111111222223333221     23455


Q ss_pred             HH--HhhHHHHHHHHHHHhcC
Q 017569          342 SF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       342 ~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ++  +..++.+++.+.|++.|
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          325 TMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            55  78889999999999876

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.81  E-value=7.2e-19  Score=173.60  Aligned_cols=215  Identities=11%  Similarity=0.066  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----H
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A  171 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~  171 (369)
                      ..+++++++++++|.+.       .++++||++|+..++. +.+             .+++|+++.+.|.++...    +
T Consensus       134 ~~~~l~~~la~~~g~~~-------~i~~~sGt~al~~~l~-~~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~  192 (464)
T 1ibj_A          134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVTH-LIK-------------NGEEIVAGDDVYGGSDRLLSQVV  192 (464)
T ss_dssp             HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEECCCchhHHHHHHHHH
Confidence            67788999999999763       7888899999876654 221             146899999999988753    5


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      +..|++++.+|++      |+++|++++++++++|++++++||+|.+.|+++|+++|+++      ++++|+|++|..+.
T Consensus       193 ~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~------gi~livDea~~~g~  260 (464)
T 1ibj_A          193 PRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDNSIMSPV  260 (464)
T ss_dssp             GGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEECTTTCTT
T ss_pred             HHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence            6779999888864      78999999999999999999999999999999999999999      99999999997543


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY  329 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~  329 (369)
                      .  ..   +.+   .++|.++.++||++++|.|.  |++++++++.. ..+.....+.+.            ....+.+|
T Consensus       261 ~--~~---~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~-~~l~~~~~~~g~------------~~~~~~~~  319 (464)
T 1ibj_A          261 L--SR---PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYFLQNSEGS------------GLAPFDCW  319 (464)
T ss_dssp             T--CC---GGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH-HHHHHHHHHTTC------------BCCHHHHH
T ss_pred             c--CC---hhh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHH-HHHHHHHHhcCC------------CCCHHHHH
Confidence            2  11   122   26899999999999888765  99988653322 222111111111            11245666


Q ss_pred             HHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCCccc
Q 017569          330 YQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYFYDT  365 (369)
Q Consensus       330 ~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~~~~  365 (369)
                      +++..+..... .+ +..+++..+.+.|++.+.+.+.
T Consensus       320 a~~~al~~~~~-r~~~~~~~~~~l~~~l~~~~~v~~~  355 (464)
T 1ibj_A          320 LCLRGIKTMAL-RIEKQQENARKIAMYLSSHPRVKKV  355 (464)
T ss_dssp             HHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTCCEE
T ss_pred             HHHhchhhHHH-HHHHHHHHHHHHHHHHHhCCCceEE
Confidence            66666532211 12 5566777777888877644443

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.80  E-value=1e-18  Score=169.19  Aligned_cols=252  Identities=10%  Similarity=0.023  Sum_probs=161.8

Q ss_pred             ChHHHHHHHHHHhccCC--CC-----CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNY--VD-----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~--~~-----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.+.+++.+.+....  .+     +........+++.+++++++++|.+.+      .+++++|++|+..++.++..+
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~v~~~sGs~a~~~a~~~~~~~  115 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA------NVQPHSGSQANFAVYTALLQP  115 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc------eeEecCcHHHHHHHHHHhcCC
Confidence            46888888887774322  11     111223456777788999999999751      343456699999888776432


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHH---HHHhhhcceeE--EEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCC
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWE---KFARYFEVELK--EVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL  214 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~---~~~~~~G~~v~--~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~  214 (369)
                                   +++|+++.++|.++.   ......|..++  .++++. ++.+|+++|++++++ ++++|+++.|+++
T Consensus       116 -------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~~  181 (420)
T 3gbx_A          116 -------------GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYS  181 (420)
T ss_dssp             -------------TCEEEEEEEC------------CHHHHSEEEEEEECT-TCSCCHHHHHHHHHHHCCSEEEECCTTCC
T ss_pred             -------------CCEEEecchhhcceeccchhhhhcccceeEEeccCCc-cCCcCHHHHHHHHHhcCCeEEEEecCccC
Confidence                         478999999997733   22234455444  455564 488999999999987 5899988887775


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC-
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK-  293 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~-  293 (369)
                        ...|+++|.++|+++      |+++|+|++|+.+...  .......  ...+|.++.++||++++|.| |+++.++. 
T Consensus       182 --~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~--~~~~~~~--~~~~di~~~s~sK~~~g~~g-g~~~~~~~~  248 (420)
T 3gbx_A          182 --GVVDWAKMREIADSI------GAYLFVDMAHVAGLIA--AGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGGD  248 (420)
T ss_dssp             --SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--TTSSCCS--TTTSSEEEEESSGGGCSCSC-EEEEESSCC
T ss_pred             --CccCHHHHHHHHHHc------CCEEEEECCcchhcee--cccCCcc--cccCCEEEeecccCCCCCCc-eEEEEcCCc
Confidence              578899999999999      9999999998654431  1111111  23589999999999977776 78776541 


Q ss_pred             -CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          294 -DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 -~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       +.. ..+.. ..+.+       ..++.+.....++..++..+..+++.++  +..++++++++.|++.|+
T Consensus       249 ~~~~-~~~~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  310 (420)
T 3gbx_A          249 EELY-KKLNS-AVFPS-------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGY  310 (420)
T ss_dssp             HHHH-HHHHH-HHC-----------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHH-HHhhh-hcCCC-------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             111 11110 00100       0123334445566666666656677666  889999999999998764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.80  E-value=4.1e-19  Score=173.19  Aligned_cols=216  Identities=13%  Similarity=0.064  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHH-----
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE-----  168 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~---t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~-~~h~s~~-----  168 (369)
                      +++.+.+++++|.+.       .++   +++|++||..++.++.++             +++|++++ +.|..+.     
T Consensus        77 ~~Le~~lA~l~g~e~-------alv~p~~~sGt~A~~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g~  136 (427)
T 3hvy_A           77 DSLDRVYANIFNTES-------AFVRPHFVNGTHAIGAALFGNLRP-------------NDTMMSICGMPYDTLHDIIGM  136 (427)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHTCCT-------------TCEEEECSSSCCGGGHHHHTC
T ss_pred             HHHHHHHHHHhCCCc-------eEEeCCCCcHHHHHHHHHHHhcCC-------------CCEEEEeCCCCchhHHHHhcc
Confidence            344456999999985       466   789999998888876542             47899988 7777654     


Q ss_pred             ------HHHhhhcceeEEEeccCCccccCHHHHHHHHh--hcCcEEEEee----CCCCcccCCCHHHHHHHHHH--hhhc
Q 017569          169 ------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEE  234 (369)
Q Consensus       169 ------~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~--~~~~~v~~~~----~~~~tG~~~~l~~I~~l~~~--~~~~  234 (369)
                            ..++..|++++.+|. + ++.+|+++|+++++  ++|++|+++.    |+||+|.+.|+++|+++|++  +   
T Consensus       137 ~~~~~~~~l~~~G~~~~~v~~-~-~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~---  211 (427)
T 3hvy_A          137 DDSKKVGSLREYGVKYKMVDL-K-DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE---  211 (427)
T ss_dssp             CTTCCSCCTGGGTCEEEECCC-B-TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS---
T ss_pred             ccchhhhHHHHcCCEEEEecC-C-CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC---
Confidence                  345567999999988 3 48999999999999  7899999999    99999999999999999999  8   


Q ss_pred             cCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC--CCeEEEEEeCCCCccccccc--ccCccCCC
Q 017569          235 TGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVF--HINYLGSD  310 (369)
Q Consensus       235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p--~g~g~l~~~~~~~~~~~~~~--~~~y~~~~  310 (369)
                         ++++++|+||+.+..   ... +..   .++|.++.++||+++++  ...|+++.+ ++.. +.+..  ....++..
T Consensus       212 ---g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li-~~l~~~~~~~~~g~~  279 (427)
T 3hvy_A          212 ---NVIVFVDNCYGEFVE---EKE-PTD---VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYV-TQATFRVTVPGIGGE  279 (427)
T ss_dssp             ---SSEEEEECTTCTTTS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHH-HHHHHHHSCTTTGGG
T ss_pred             ---CCEEEEECCcccccc---CCC-Ccc---cCCeEEEECCcccccccccceEEEEEEC-HHHH-HHHHHHhhcCCcccc
Confidence               999999999986542   111 112   26899999999998763  233777764 3232 22211  11111110


Q ss_pred             CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       311 ~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                             .+.+..   ..|..++.+.... ..+ +..++|.++++.|+++|+
T Consensus       280 -------~~~~~~---~a~~~~~gl~~~~-~r~~~~~~~a~~la~~L~~~g~  320 (427)
T 3hvy_A          280 -------CGSTFG---VMRSLYEGLFMAP-HVTIEAVKGAVFCARIMELAGF  320 (427)
T ss_dssp             -------CCCCTT---CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -------cCCCHH---HHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence                   011011   1344444432211 122 899999999999999986

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.80  E-value=1e-18  Score=166.33  Aligned_cols=250  Identities=10%  Similarity=0.006  Sum_probs=167.8

Q ss_pred             cccccccC-CChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           59 NLASFVTT-WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        59 ~l~~~~~~-~~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      +|+...+. ++++.+.+++.+.+...   ...|. .+...+++    +++++++|+++     ..+++|+||++|+..++
T Consensus        30 ~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr----~~la~~~g~~~-----~~i~~t~g~~~al~~~~   99 (360)
T 3hdo_A           30 KLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLR----EVAGELYGFDP-----SWIIMANGSDEVLNNLI   99 (360)
T ss_dssp             ECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHH----HHHHHHHTCCG-----GGEEEESSHHHHHHHHH
T ss_pred             eccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHH----HHHHHHhCcCc-----ceEEEcCCHHHHHHHHH
Confidence            34443333 34578889988888764   33332 23444554    45778888764     35899999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .++.++             +++|+++.++|..+...++..|++++.+|++++ +.+  +++++++  ++++++++.++||
T Consensus       100 ~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~--~~l~~~~--~~~~v~i~~p~np  161 (360)
T 3hdo_A          100 RAFAAE-------------GEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRI--AGFPERY--EGKVFFLTTPNAP  161 (360)
T ss_dssp             HHHCCT-------------TCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT-SSB--TTCCSSB--CSSEEEEESSCTT
T ss_pred             HHHhCC-------------CCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC-CCH--HHHHhhc--CCCEEEEeCCCCC
Confidence            887432             478999999999999999999999999999764 566  4554433  4678999999999


Q ss_pred             cccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCC
Q 017569          215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTK  293 (369)
Q Consensus       215 tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~  293 (369)
                      +|.+.|+++|.++|+++      ++++++|++|+.+..   .+ ..........+.+..+++|+++ .+.+.|+++.. +
T Consensus       162 tG~~~~~~~l~~l~~~~------~~~li~De~~~~~~~---~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~  230 (360)
T 3hdo_A          162 LGPSFPLEYIDELARRC------AGMLVLDETYAEFAE---SN-ALELVRRHENVVVTRTLSKSYSLAGMRIGLAIAR-P  230 (360)
T ss_dssp             TCCCCCHHHHHHHHHHB------SSEEEEECTTGGGSS---CC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECC-H
T ss_pred             CCCCcCHHHHHHHHHHC------CCEEEEECChHhhCC---cc-hhHHhccCCCEEEEecchHhhcCCccceeeEeeC-H
Confidence            99999999999999999      999999999986421   01 0011112244566778999975 55678988763 2


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.. +.+.....       .    ++-+.....++..+|+.  .+.+.++  +..++.+++.+.|++.|+
T Consensus       231 ~~~-~~~~~~~~-------~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~  286 (360)
T 3hdo_A          231 EVI-AALDKIRD-------H----YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGY  286 (360)
T ss_dssp             HHH-HHHHHHSC-------S----CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHhCC-------C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            222 22211000       1    12222223333333432  3345555  788899999999988753

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.80  E-value=3.4e-18  Score=166.81  Aligned_cols=280  Identities=11%  Similarity=-0.007  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHhhhhc-CCCCccccccccC-CChHHHHHHHHHHhcc-----CCCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 017569           39 KEAAYQVINDELMLD-GNPRLNLASFVTT-WMEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP  111 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~-~~p~~~l~~~~~~-~~~~~v~~~~~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g~~  111 (369)
                      .+.+.+........+ +...++|+.+.+. +.++.+.+++.+++..     ....|....+..++++++.+|+.+.++.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~  118 (432)
T 3ei9_A           39 FPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG  118 (432)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC
Confidence            444545444433333 3344677766554 3457788888877653     22334444577899999888887645555


Q ss_pred             CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcc------------eeE
Q 017569          112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELK  179 (369)
Q Consensus       112 ~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~------------~v~  179 (369)
                      +     ...++|+|+++++.. +.++.+             .++.|+++.++|.++...++..|.            +++
T Consensus       119 ~-----~~i~~t~G~~~al~~-l~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  179 (432)
T 3ei9_A          119 D-----DDVFVSDGAKCDISR-LQVMFG-------------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIE  179 (432)
T ss_dssp             G-----GGEEEESCHHHHHHH-HHHHHC-------------TTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCE
T ss_pred             c-----ceEEECCChHHHHHH-HHHHcC-------------CCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceE
Confidence            3     458999999999975 344332             147899999999999999988884            688


Q ss_pred             EEeccCC-ccccCHHHHHHHHhhcCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeeccccccccccc
Q 017569          180 EVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL  255 (369)
Q Consensus       180 ~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~  255 (369)
                      .+|++.+ ++..|+++     .+++++|++++|+||||.+-   ++++|+++|+++      ++++++|++|+.+...- 
T Consensus       180 ~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~------~~~li~Dea~~~~~~~~-  247 (432)
T 3ei9_A          180 YMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN------GSIIVYDSAYAMYMSDD-  247 (432)
T ss_dssp             EEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCSS-
T ss_pred             EeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEccchHhhccCC-
Confidence            8888642 34555432     35789999999999999985   477788889999      99999999999765420 


Q ss_pred             CCCcccccc-CCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCc------ccccccccCccCCCCCCccccCCcchhHHHH
Q 017569          256 YPDLEWDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDL------PDELVFHINYLGSDQPTFTLNFSKGSSQIIA  327 (369)
Q Consensus       256 ~~~~~~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~------~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~  327 (369)
                      .+.....+. ....+.+..+++|.++ .+.++|++++++....      ...+.......            -.+...+.
T Consensus       248 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  315 (432)
T 3ei9_A          248 NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC------------FNGASNIS  315 (432)
T ss_dssp             CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS------------CCCSCHHH
T ss_pred             CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccc------------cCCCCHHH
Confidence            010001111 1245677888999985 6677899987654210      11110000000            00112445


Q ss_pred             HHHHHHHhcHh---hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          328 QYYQFIRLGFE---VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       328 ~~~~l~~lg~~---G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +.+++..+..+   .+.++  +..++.+++++.|++.|+
T Consensus       316 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  354 (432)
T 3ei9_A          316 QAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGY  354 (432)
T ss_dssp             HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            55555555433   34444  788899999999998764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.80  E-value=5.3e-18  Score=165.32  Aligned_cols=241  Identities=12%  Similarity=-0.016  Sum_probs=164.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhCCCCCC-CC---CCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC
Q 017569           86 DMDEYPVTTELQNRCVNMIAHLFNTPVAD-DK---TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA  161 (369)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~-~~---~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~  161 (369)
                      .|....+..++++++.+++++.+|.+.++ +.   ...+++|+|+++|+.+++.++.++             +++|+++.
T Consensus        73 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vlv~~  139 (425)
T 2r2n_A           73 QYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINP-------------GDNVLLDE  139 (425)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCT-------------TCEEEEES
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCC-------------CCEEEEeC
Confidence            34455678899999999999999987411 00   125899999999999998887542             47899999


Q ss_pred             CCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh------------hcCcEEEE-eeCCCCcccCCCHH---HHH
Q 017569          162 NVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD------------ENTICVAA-ILGSTLTGEFEDVK---LLH  225 (369)
Q Consensus       162 ~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~------------~~~~~v~~-~~~~~~tG~~~~l~---~I~  225 (369)
                      ++|..+...++..|++++.+|++++  .+|+++|+++++            +++++|++ .+++||||.+.+.+   +|+
T Consensus       140 p~y~~~~~~~~~~g~~~~~v~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~  217 (425)
T 2r2n_A          140 PAYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY  217 (425)
T ss_dssp             SCCHHHHHHHGGGTCEEEEECEETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCEEEEeCcCCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHH
Confidence            9999999999999999999998764  489999999997            35788766 68999999997655   999


Q ss_pred             HHHHHhhhccCCCceEEeecccccccccccCCCc-cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccccc
Q 017569          226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI  304 (369)
Q Consensus       226 ~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~  304 (369)
                      ++|+++      ++++++|++|+.+.+.- .+.. -..+...+.+.+..+++|+++.+...|+++++++ .. ..+....
T Consensus       218 ~~a~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~-~~l~~~~  288 (425)
T 2r2n_A          218 ELARKY------DFLIIEDDPYYFLQFNK-FRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LI-ERVILHI  288 (425)
T ss_dssp             HHHHHT------TCEEEEECTTGGGBSSS-SCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HH-HHHHHHH
T ss_pred             HHHHHc------CCEEEEECCcccccCCC-CCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH-HH-HHHHHHH
Confidence            999999      99999999998754310 0100 0112222345667789999974556899988642 22 2221100


Q ss_pred             CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhH----HHH--HhhHHHHHHHHHHHhc
Q 017569          305 NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVI----PSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       305 ~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~----~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ...     .    ++-+.....++..+|+.++.+++    +++  +..++.+++.+.|++.
T Consensus       289 ~~~-----~----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  340 (425)
T 2r2n_A          289 QVS-----T----LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW  340 (425)
T ss_dssp             HTT-----T----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-----c----CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000     0    12222222333344444433333    333  5667778888888874

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.80  E-value=7.3e-19  Score=170.59  Aligned_cols=216  Identities=14%  Similarity=0.035  Sum_probs=154.0

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-  169 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-  169 (369)
                      |...++|+.    +++++|.+.       .+++++|++|+..++. +..             .+++|+++.+.|.+... 
T Consensus        67 p~~~~l~~~----la~~~g~~~-------~i~~~sG~~ai~~~~~-l~~-------------~gd~Vl~~~~~y~~~~~~  121 (403)
T 3cog_A           67 PTRNCLEKA----VAALDGAKY-------CLAFASGLAATVTITH-LLK-------------AGDQIICMDDVYGGTNRY  121 (403)
T ss_dssp             HHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHH
T ss_pred             chHHHHHHH----HHHHhCCCc-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEeCCCcchHHHH
Confidence            444555554    788888763       5666677899988877 432             14689999999987433 


Q ss_pred             ---HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC-ceEEeec
Q 017569          170 ---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDA  245 (369)
Q Consensus       170 ---~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~-~~l~vD~  245 (369)
                         .++..|++++.+|++      |+++|++++++++++|++++++||+|.+.|+++|+++|+++      + +++++|+
T Consensus       122 ~~~~~~~~G~~v~~v~~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~~livD~  189 (403)
T 3cog_A          122 FRQVASEFGLKISFVDCS------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKH------GDIILVVDN  189 (403)
T ss_dssp             HHHTGGGGTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSS------SCCEEEEEC
T ss_pred             HHHHHHHcCCEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHc------CCCEEEEEC
Confidence               346789999888865      78999999999999999999999999999999999999999      9 9999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +|+.+..  ..   +.+   .++|.++.++||++++|.+  .|+++.++++.. ..+.......+         ++.   
T Consensus       190 ~~~~~~~--~~---~~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~-~~l~~~~~~~g---------~~~---  248 (403)
T 3cog_A          190 TFMSPYF--QR---PLA---LGADISMYSATKYMNGHSDVVMGLVSVNCESLH-NRLRFLQNSLG---------AVP---  248 (403)
T ss_dssp             TTTCTTT--CC---TTT---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHH-HHHHHHHHHHC---------CCC---
T ss_pred             CCccccc--CC---ccc---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHH-HHHHHHHHhcC---------CCC---
Confidence            9987543  11   122   3689999999999988876  488888654332 12111000011         111   


Q ss_pred             HHHHHHHHHHHhcHhhHHH-H-HhhHHHHHHHHHHHhcCCCcccc
Q 017569          324 QIIAQYYQFIRLGFEVIPS-F-CCVDHKKLSSFFVIHSSYFYDTL  366 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~-~-~~~~~a~~l~~~L~~~g~~~~~~  366 (369)
                      ..+.+|++++.+..  +.. + +..+++..+++.|++.+.+.+.+
T Consensus       249 ~~~~~~~~~~~l~~--l~~r~~~~~~n~~~l~~~l~~~~~v~~~~  291 (403)
T 3cog_A          249 SPIDCYLCNRGLKT--LHVRMEKHFKNGMAVAQFLESNPWVEKVI  291 (403)
T ss_dssp             CHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred             CHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            24566666665542  332 3 77788889999998886655543

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.80  E-value=1.7e-18  Score=164.96  Aligned_cols=220  Identities=12%  Similarity=-0.009  Sum_probs=157.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCC-CeEEecCCCcchHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKF  170 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~-~~Vi~s~~~h~s~~~~  170 (369)
                      ...+++++    +++++|+++     ...++|+|+++++..++.++.++             + ++|+++.++|..+...
T Consensus        59 ~~~~lr~~----la~~~~~~~-----~~v~~~~G~~~ai~~~~~~~~~~-------------g~d~Vl~~~p~~~~~~~~  116 (356)
T 1fg7_A           59 QPKAVIEN----YAQYAGVKP-----EQVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVS  116 (356)
T ss_dssp             SCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCCT-------------TTCEEEECSSSCTHHHHH
T ss_pred             cHHHHHHH----HHHHhCCCh-----HHEEEcCCHHHHHHHHHHHHhCC-------------CCCEEEEeCCChHHHHHH
Confidence            34555555    777778875     24899999999999988887432             4 6899999999999999


Q ss_pred             HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH--hhhccCCCceEEeecccc
Q 017569          171 ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASG  248 (369)
Q Consensus       171 ~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~--~~~~~~~~~~l~vD~a~~  248 (369)
                      ++..|++++.+|+++ ++.+|+++|+++++ ++++|++++|+||||.+.|.++|.++++.  +      ++++++|++|+
T Consensus       117 ~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~  188 (356)
T 1fg7_A          117 AETIGVECRTVPTLD-NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG------KAIVVADEAYI  188 (356)
T ss_dssp             HHHHTCEEEECCCCT-TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT------TCEEEEECTTG
T ss_pred             HHHcCCEEEEeeCCC-CCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC------CCEEEEEccch
Confidence            999999999999875 47899999999998 88999999999999999776555555444  7      99999999998


Q ss_pred             cccccccCCCccccc-cCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHH
Q 017569          249 GFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQII  326 (369)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l  326 (369)
                      .+..   ... ...+ .....+.+..+.+|+++ .+.+.|++++++ +.. ..+...    .   ..+    +   ...+
T Consensus       189 ~~~~---~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~----~---~~~----~---~~~~  248 (356)
T 1fg7_A          189 EFCP---QAS-LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-EVI-NLLMKV----I---APY----P---LSTP  248 (356)
T ss_dssp             GGSG---GGC-SGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH-HHH-HHHHHH----S---CSS----C---SCHH
T ss_pred             hhcC---CCc-HHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH-HHH-HHHHHh----c---CCC----C---CCHH
Confidence            7541   010 0111 22245677788999985 455689998843 222 222110    0   011    1   1245


Q ss_pred             HHHHHHHHhcHhh---HHHH--HhhHHHHHHHHHHHhcCC
Q 017569          327 AQYYQFIRLGFEV---IPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       327 ~~~~~l~~lg~~G---~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+++++..+...+   +++.  +..++.+++.+.|++.|.
T Consensus       249 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  288 (356)
T 1fg7_A          249 VADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPC  288 (356)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5667777776656   4444  778888999999998873

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.80  E-value=9.7e-19  Score=164.50  Aligned_cols=153  Identities=22%  Similarity=0.148  Sum_probs=124.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----hhhc
Q 017569          100 CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYFE  175 (369)
Q Consensus       100 ~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~----~~~G  175 (369)
                      +++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+    +..|
T Consensus         3 l~~~la~~~g~~~-------~i~~~sG~~a~~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~~~~~~~~~g   62 (331)
T 1pff_A            3 LEGKIAKLEHAEA-------CAATASGMGAIAASVWTFLKA-------------GDHLISDDCLYGCTHALFEHQLRKFG   62 (331)
T ss_dssp             HHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcCC-------------CCEEEEcCCCcchHHHHHHHHHHhcC
Confidence            4556899999863       566777799999988876331             468999999999877665    4478


Q ss_pred             ceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH-hhhccCCCceEEeecccccccccc
Q 017569          176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       176 ~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~-~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      ++++.+|.      +|+++|++++++++++|++++++||+|.+.|+++|.++|++ +      ++++|+|++|+.+... 
T Consensus        63 ~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~------~~~li~D~a~~~~~~~-  129 (331)
T 1pff_A           63 VEVDFIDM------AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPILT-  129 (331)
T ss_dssp             CEEEEECT------TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHHC-
T ss_pred             CEEEEeCC------CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhc------CCEEEEECCCcccccC-
Confidence            88888875      36789999999889999999999999999999999999999 9      9999999999865541 


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeC
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRT  292 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~  292 (369)
                       .+   .+   .++|.++.++||++++|.+  .|+++.++
T Consensus       130 -~~---~~---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~  162 (331)
T 1pff_A          130 -NP---LD---LGVDIVVHSATKYINGHTDVVAGLVCSRA  162 (331)
T ss_dssp             -CG---GG---GTCSEEEEETTTTTSSSSSCCCEEEEECH
T ss_pred             -Ch---hh---cCCcEEEEECccccCCCCCceEEEEEeCc
Confidence             11   11   3689999999999988876  78888764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.80  E-value=2.6e-18  Score=169.28  Aligned_cols=256  Identities=10%  Similarity=-0.016  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      +.+.+++.+++......|...++..++++    ++++++|.+.       +++|+||++|+.+++.++++.+.    .+ 
T Consensus        55 ~~v~~a~~~~~~~~~~~y~~~~~~~~l~~----~la~~~~~~~-------v~~t~ggt~A~~~al~~~~~~~~----~~-  118 (467)
T 1ax4_A           55 NAMSDHQWAAMITGDEAYAGSRNYYDLKD----KAKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQ----KE-  118 (467)
T ss_dssp             CCEEHHHHHHHHTCCCCSSSCHHHHHHHH----HHHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHH----HT-
T ss_pred             HHHHHHHHHHHhhcccccccCccHHHHHH----HHHHHcCCCc-------EEEcCCcHHHHHHHHHHHHHhhc----cC-
Confidence            44556555555443334444455555554    4777788753       89999999999999999876211    01 


Q ss_pred             CCCCCCe---EEecCCCcchHHHHHhhhcceeEEEeccC---------CccccCHHHHHHHHhh----cCcEEEEeeCCC
Q 017569          150 KPYDKPN---IVTGANVQVCWEKFARYFEVELKEVKLEE---------GYYVMNPVKAVELVDE----NTICVAAILGST  213 (369)
Q Consensus       150 ~~~~~~~---Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~---------~~~~~d~~~L~~~i~~----~~~~v~~~~~~~  213 (369)
                          ++.   |+++.+.|..+..++...|..++.++.+.         .++.+|+++|++++++    ++++|+++.++|
T Consensus       119 ----Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~n  194 (467)
T 1ax4_A          119 ----GKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN  194 (467)
T ss_dssp             ----TCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred             ----CCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEecccc
Confidence                244   77884444556777788898887765431         1367999999999985    688999999999


Q ss_pred             Cc-ccC---CCHHHHHHHHHHhhhccCCCceEEeeccccc-ccc-------cccCCCcccccc---CCCCcEEEEcCccC
Q 017569          214 LT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKY  278 (369)
Q Consensus       214 ~t-G~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~Dsi~~~~hK~  278 (369)
                      |+ |.+   +++++|+++|+++      |+|+|+|+++.. +..       .+. +....++.   ...+|+++.+.||+
T Consensus       195 p~gG~~~~~~~l~~i~~la~~~------gi~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~s~sK~  267 (467)
T 1ax4_A          195 SAGGQPVSMSNLKEVYEIAKQH------GIFVVMDSARFCENAYFIKARDPKYK-NATIKEVIFDMYKYADALTMSAKKD  267 (467)
T ss_dssp             TTTSBCCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHHHHHCGGGT-TCCHHHHHHHHGGGCSEEEEETTST
T ss_pred             CCCccCCChhHHHHHHHHHHHc------CCEEEEEchhhhhcchhccccccccC-CCchhhhhhhhccccceEEEecccc
Confidence            99 775   5688999999999      999999998653 111       011 10000110   13478999999999


Q ss_pred             CCCCCCeEEEEEeCC-CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHH
Q 017569          279 GLVYAGVGWVVWRTK-DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFV  356 (369)
Q Consensus       279 l~~p~g~g~l~~~~~-~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L  356 (369)
                      ++.|.| |+++.+++ +... .+.......++. .++   ++.+.....++..++..+-.+  ..+ +..++++++++.|
T Consensus       268 ~g~~~G-g~~~~~d~~~l~~-~~~~~~~~~~~~-~~~---~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~l~~~L  339 (467)
T 1ax4_A          268 PLLNIG-GLVAIRDNEEIFT-LARQRCVPMEGF-VTY---GGLAGRDMAAMVQGLEEGTEE--EYLHYRIGQVKYLGDRL  339 (467)
T ss_dssp             TCCSSC-EEEEESSCHHHHH-HHHHHHHHHTCS-TTT---TTCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHH
T ss_pred             CCCCcc-eEEEeCCHHHHHH-HHHhhccccccc-ccc---CCccchHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHH
Confidence            977655 66666544 4332 211111111111 111   233333223333345443221  122 4457788999999


Q ss_pred             HhcC
Q 017569          357 IHSS  360 (369)
Q Consensus       357 ~~~g  360 (369)
                      ++.|
T Consensus       340 ~~~~  343 (467)
T 1ax4_A          340 REAG  343 (467)
T ss_dssp             HHTT
T ss_pred             HhCC
Confidence            8744

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.79  E-value=6.2e-19  Score=180.99  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=163.1

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhccee
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL  178 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v  178 (369)
                      ++.+.+++++|++.      ...+++|++.||..++.++.++             +++|+++.+.|.|+..++.+.|+.+
T Consensus       199 eaE~~lA~~fGa~~------a~~v~nGts~An~~ai~al~~p-------------GD~VLv~r~~H~S~~~~l~lsGa~p  259 (715)
T 3n75_A          199 EAEQYIARVFNADR------SYMVTNGTSTANKIVGMYSAPA-------------GSTILIDRNCHKSLTHLMMMSDVTP  259 (715)
T ss_dssp             HHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred             HHHHHHHHHhCCCC------ceEECcHHHHHHHHHHHHhCCC-------------CCEEEECCCccHHHHHHHHHcCCEE
Confidence            45556999999985      2455666689998888887543             5799999999999999999999999


Q ss_pred             EEEeccCCccc----c-----CHHHHHHHHhhc--Cc---EEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          179 KEVKLEEGYYV----M-----NPVKAVELVDEN--TI---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       179 ~~v~~~~~~~~----~-----d~~~L~~~i~~~--~~---~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      ++++.+.+++.    +     |+++|++++++.  ++   ++++++| |++|.+.|+++|+++|+++      +  +++|
T Consensus       260 v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~------~--livD  330 (715)
T 3n75_A          260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IHFD  330 (715)
T ss_dssp             EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS------E--EEEE
T ss_pred             EEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC------c--EEEc
Confidence            99987543343    3     899999999863  33   7889999 8999999999999999765      4  7999


Q ss_pred             cccccccccccCCCcc--ccccC-CCCcEE---EEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccC
Q 017569          245 AASGGFIAPFLYPDLE--WDFRL-PLVKSI---NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF  318 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~--~~~~~-~~~Dsi---~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~  318 (369)
                      +||+.+..  +.+..+  ..+.. ..+|.+   +.++||++.++.++|++++++. .....+.....+...        .
T Consensus       331 EAH~~~~~--f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~~S--------T  399 (715)
T 3n75_A          331 SAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHTT--------T  399 (715)
T ss_dssp             CTTCTTGG--GSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHTSC--------S
T ss_pred             cccccccc--cCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhhcC--------C
Confidence            99987652  122111  11111 136766   8899999999888899998865 211112111122211        3


Q ss_pred             CcchhHHHHHHHHHHHhcH-hhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          319 SKGSSQIIAQYYQFIRLGF-EVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       319 tr~~~~~l~~~~~l~~lg~-~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                      |.+....+++-++++.+.. +|-..+ +..+++++++++|++.+
T Consensus       400 Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~  443 (715)
T 3n75_A          400 SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR  443 (715)
T ss_dssp             SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555556777788888864 676666 99999999999998864

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.79  E-value=3.1e-19  Score=174.16  Aligned_cols=208  Identities=11%  Similarity=-0.011  Sum_probs=151.5

Q ss_pred             cccccccc-CC-ChHHH--HHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHh-CCCCCCCCCCC---eEEeCCchH
Q 017569           58 LNLASFVT-TW-MEPEC--DKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAV---GVGTVGSSE  128 (369)
Q Consensus        58 ~~l~~~~~-~~-~~~~v--~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~---~~~t~Ggt~  128 (369)
                      ++|+.+.+ .. .++.+  .+++.+.++. ....|....+..++++++.+++.+.. ++++     ..   +++|+||++
T Consensus        50 i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~~t~g~~~  124 (430)
T 2x5f_A           50 YNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-----DNMSRPIVTNALTH  124 (430)
T ss_dssp             EECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-----GGBCCCEEESHHHH
T ss_pred             EEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-----CccceEEEcCCchH
Confidence            45555544 22 23333  4554444543 33444444578889999888887653 3332     34   799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhh-hcceeEEEeccCCccccCHHHHHHHHhh---cCc
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY-FEVELKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~-~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (369)
                      |+.+++.++.++             +++|+++.++|..+...++. .|++++.+|++++++.+|+++|++++++   +++
T Consensus       125 al~~~~~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  191 (430)
T 2x5f_A          125 GLSLVGDLFVNQ-------------DDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKV  191 (430)
T ss_dssp             HHHHHHHHHCCT-------------TCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEE
T ss_pred             HHHHHHHHHhCC-------------CCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCE
Confidence            999998887432             46899999999999999999 9999999998763378999999999988   788


Q ss_pred             EEEEeeCCCCcccCCC---HHHHHHHHHH-----hhhccCCCceEEeecccccccccccCCCcc-c-ccc-CCCC---cE
Q 017569          205 CVAAILGSTLTGEFED---VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPDLE-W-DFR-LPLV---KS  270 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~---l~~I~~l~~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~-~~~-~~~~---Ds  270 (369)
                      +|+++.|+||||.+.+   +++|+++|++     +      ++++++|++|+.+.... .+... . .+. ....   +.
T Consensus       192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  264 (430)
T 2x5f_A          192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT------KVIAVVDDAYYGLFYED-VYTQSLFTALTNLHSNAILPI  264 (430)
T ss_dssp             EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTC------EEEEEEECTTTTCBCSS-SCCSCHHHHHHTTCCTTEEEE
T ss_pred             EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccC------CEEEEEehhcccccCCc-ccchHHHHHHhhccCCcceEE
Confidence            9999999999999977   8999999999     9      99999999998754310 00011 1 222 1233   55


Q ss_pred             EEEcCccCCC-CCCCeEEEEE
Q 017569          271 INVSGHKYGL-VYAGVGWVVW  290 (369)
Q Consensus       271 i~~~~hK~l~-~p~g~g~l~~  290 (369)
                      +..+++|+++ .+.+.|++++
T Consensus       265 ~~~s~sK~~~~~G~riG~~~~  285 (430)
T 2x5f_A          265 RLDGATKEFFAWGFRVGFMTF  285 (430)
T ss_dssp             EEEEHHHHTTCGGGCCEEEEE
T ss_pred             EEEecccCCCCCCCCeEEEEE
Confidence            6778999985 4456799988

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.79  E-value=3.7e-18  Score=167.78  Aligned_cols=251  Identities=8%  Similarity=-0.052  Sum_probs=165.7

Q ss_pred             CChHHHHHHHHHHhccCC-CCCC------CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY-VDMD------EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~-~~~~------~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      +.++.+.+++.+.+.+.. ..+.      .......+|+..++++++++|.+.      ..+++++|++|+..++.++++
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~------~~v~~~sGs~a~~~a~~~~~~  129 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF------ANVQPHSGAQANAAVLHALMS  129 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc------eEEEeCCHHHHHHHHHHHhcC
Confidence            446888888887774221 1111      112233445444489999999985      133378899999988888754


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcch-HHHH--Hhhhcc--eeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCC
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVC-WEKF--ARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s-~~~~--~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (369)
                      +             +++|+++.++|.+ +...  ....|.  .+..++++++++.+|+++|++++.+ ++++|+++.+++
T Consensus       130 ~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~  196 (447)
T 3h7f_A          130 P-------------GERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY  196 (447)
T ss_dssp             T-------------TCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred             C-------------CCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence            2             4789999988866 2221  223343  4555666655589999999999964 788888888888


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      +++.  ++++|+++|+++      ++++|+|++|..+..  ........  ..++|.++.++||++.+|.+ |+++.++ 
T Consensus       197 ~~~~--~l~~i~~l~~~~------g~lli~Dea~~~g~~--~~g~~~~~--~~~~di~~~s~sK~l~G~~g-G~i~~~~-  262 (447)
T 3h7f_A          197 PRVL--DFAAFRSIADEV------GAKLLVDMAHFAGLV--AAGLHPSP--VPHADVVSTTVHKTLGGGRS-GLIVGKQ-  262 (447)
T ss_dssp             CSCC--CHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCS--TTTCSEEEEESSGGGCCCSC-EEEEECG-
T ss_pred             CCcc--CHHHHHHHHHHc------CCEEEEECCchhhhh--cCCCCCCC--CCCCcEEEecCCcCCCCCCe-EEEEECH-
Confidence            8776  999999999999      999999999754432  11111111  24689999999999977766 8887653 


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      +.. ..+... .+ ..      ..++.......++.+++..+..++++++  +..++++++++.|++.
T Consensus       263 ~~~-~~l~~~-~~-~~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          263 QYA-KAINSA-VF-PG------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             GGH-HHHHHH-HT-TT------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             HHH-HHHhhh-cC-Cc------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222 221110 00 00      1123333335566666776655566666  8999999999999887

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.79  E-value=5.4e-18  Score=163.60  Aligned_cols=247  Identities=12%  Similarity=-0.029  Sum_probs=164.9

Q ss_pred             hHHHHHHHHHHhccCC---CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      +|.+.+++.+++....   ..+....+......++++.+++++|.+.      ..++ ++|++++..++.++...     
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~i~~-~sG~~a~~~~~~~l~~~-----  129 (401)
T 2bwn_A           62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA------ALVF-SSAYNANDATLSTLRVL-----  129 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE------EEEE-SCHHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc------EEEE-CCcHHHHHHHHHHHhcC-----
Confidence            4568888887775421   1111111122333456666888888742      2455 45555877776654321     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHh----hcCcEEEEeeCCCCcccCCCH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~----~~~~~v~~~~~~~~tG~~~~l  221 (369)
                       .     .+++|+++.++|.++...++..|++++.+|.+      |+++|+++++    +++++|++++++||||.+.|+
T Consensus       130 -~-----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l  197 (401)
T 2bwn_A          130 -F-----PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPI  197 (401)
T ss_dssp             -S-----TTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCH
T ss_pred             -C-----CCCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCH
Confidence             0     13689999999999999999999999999864      6888998887    578999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cc--cccC-CCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW--DFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~--~~~~-~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      ++|.++|+++      ++++|+|++|+.+.+   .+.. .+  .... ...|.+..+.+|.++.| | |+++.+ ++.. 
T Consensus       198 ~~i~~l~~~~------~~~li~Dea~~~g~~---~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~-G-G~~~~~-~~~~-  264 (401)
T 2bwn_A          198 KEICDIAEEF------GALTYIDEVHAVGMY---GPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAAS-ARMV-  264 (401)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTS---STTSCCHHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEEC-HHHH-
T ss_pred             HHHHHHHHHc------CCEEEEecccccccc---CCCCceeeeccCccccCcEEEeechhhccCC-C-CEEecC-HHHH-
Confidence            9999999999      999999999985433   1110 00  1111 24578888999998754 3 777663 2221 


Q ss_pred             ccccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          298 DELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       298 ~~~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..+.. ...+...       .++.+ ...+++..+++.+...|+.++  +..++++++.+.|++.|
T Consensus       265 ~~l~~~~~~~~~~-------~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  322 (401)
T 2bwn_A          265 DAVRSYAPGFIFS-------TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG  322 (401)
T ss_dssp             HHHHHHCHHHHTS-------BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCcCceec-------CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC
Confidence            12111 0111100       12322 345666778888776677776  88999999999998875

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.79  E-value=3.3e-18  Score=164.63  Aligned_cols=212  Identities=15%  Similarity=0.012  Sum_probs=150.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH----Hhhh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYF  174 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~----~~~~  174 (369)
                      ++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.+....    ++..
T Consensus        56 ~l~~~la~~~~~~~-------~i~~~sGt~a~~~~~~~~~~~-------------g~~vl~~~~~~~~~~~~~~~~~~~~  115 (386)
T 1cs1_A           56 VVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYRLFDSLAKRG  115 (386)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCCcHhHHHHHHHHHHhc
Confidence            44555888888762       455566699999988876331             46899999999874443    4667


Q ss_pred             cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccc
Q 017569          175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF  254 (369)
Q Consensus       175 G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~  254 (369)
                      |++++.+|.+      |+++|++++++++++|+++.++||+|.+.|+++|.++|+++      ++++|+|++|+.+..+ 
T Consensus       116 g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~-  182 (386)
T 1cs1_A          116 CYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLSPALQ-  182 (386)
T ss_dssp             SCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCTTTC-
T ss_pred             CCEEEEeCCC------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcccccC-
Confidence            8888888763      78999999999999999999999999999999999999999      9999999999876541 


Q ss_pred             cCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHH
Q 017569          255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF  332 (369)
Q Consensus       255 ~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l  332 (369)
                       .   ...   .++|.++.++||++++|.+.  |++++++++.. ..+.......+         ++.   ..+.+|+++
T Consensus       183 -~---~~~---~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~-~~l~~~~~~~~---------~~~---~~~~~~~~~  242 (386)
T 1cs1_A          183 -N---PLA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNIG---------VTG---GAFDSYLLL  242 (386)
T ss_dssp             -C---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHT---------CBC---CHHHHHHHH
T ss_pred             -C---ccc---cCceEEEEcCcccccCCCCceeEEEEeCcHHHH-HHHHHHHHhcC---------CCC---CHHHHHHHH
Confidence             1   111   36899999999999888764  88888653222 12111000000         111   233445444


Q ss_pred             HHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCccc
Q 017569          333 IRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYDT  365 (369)
Q Consensus       333 ~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~~  365 (369)
                      ..+.  .+...  +..++++++.+.|++++.+.+.
T Consensus       243 ~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~l~~~  275 (386)
T 1cs1_A          243 RGLR--TLVPRMELAQRNAQAIVKYLQTQPLVKKL  275 (386)
T ss_dssp             HHHT--THHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             hccc--HHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            4432  23333  6778889999999887765443

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.79  E-value=1.3e-18  Score=167.58  Aligned_cols=260  Identities=9%  Similarity=-0.050  Sum_probs=170.6

Q ss_pred             CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCC--CCCCCCCCCeEE--eCCchHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG--TVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~Ggt~a~~~al~~~~~~~  141 (369)
                      ++++.+.+++.+.++. ....|....+..++++++.+++.+..+.  ++     ..+++  |+||++|+.+++.++... 
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-----~~v~~~~~~g~~~a~~~~~~~~~~~-  117 (396)
T 2q7w_A           44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND-----KRARTAQTPGGTGALRVAADFLAKN-  117 (396)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-----TCEEEEEESHHHHHHHHHHHHHHHH-
T ss_pred             cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCcccc-----ccEEEEecccchhhHHHHHHHHHHh-
Confidence            3457788888877654 2334545567888888877776443221  22     23666  999999999988776431 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhh---cCcEEEEeeCCCCccc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE---NTICVAAILGSTLTGE  217 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~  217 (369)
                                ..+++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++   ++++++++.++||||.
T Consensus       118 ----------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~  187 (396)
T 2q7w_A          118 ----------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGI  187 (396)
T ss_dssp             ----------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCC
T ss_pred             ----------CCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence                      0146899999999999999999999999999852 3589999999999975   3677888999999999


Q ss_pred             CC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-cc-CCCCcEEEEcCccCCC-CCCCeEEEEE-
Q 017569          218 FE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHKYGL-VYAGVGWVVW-  290 (369)
Q Consensus       218 ~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~Dsi~~~~hK~l~-~p~g~g~l~~-  290 (369)
                      +.   ++++|+++|+++      ++++++|++|+++....-.+..... +. ...-+.++.+.+|.++ .+.+.|++++ 
T Consensus       188 ~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~  261 (396)
T 2q7w_A          188 DPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLV  261 (396)
T ss_dssp             CCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHC------CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEE
Confidence            85   467899999999      9999999999875431000000111 11 1123456778999985 3455799986 


Q ss_pred             -eCCCC---cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH--------hhHHHH--HhhHHHHHHHHHH
Q 017569          291 -RTKDD---LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF--------EVIPSF--CCVDHKKLSSFFV  356 (369)
Q Consensus       291 -~~~~~---~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~--------~G~~~~--~~~~~a~~l~~~L  356 (369)
                       .+++.   +...+..   ....   .+   ++.   ..+.++++...+..        +.++++  +..++.+++.+.|
T Consensus       262 ~~~~~~~~~~~~~~~~---~~~~---~~---~~~---~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  329 (396)
T 2q7w_A          262 AADSETVDRAFSQMKA---AIRA---NY---SNP---PAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTL  329 (396)
T ss_dssp             CSSHHHHHHHHHHHHH---HHHT---TT---SSC---CHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH---HHhh---cc---CCC---CcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23311   1111110   0000   00   111   13344444444422        345555  7888999999999


Q ss_pred             HhcC
Q 017569          357 IHSS  360 (369)
Q Consensus       357 ~~~g  360 (369)
                      ++.|
T Consensus       330 ~~~~  333 (396)
T 2q7w_A          330 QEKG  333 (396)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            9876

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.79  E-value=4.8e-18  Score=166.99  Aligned_cols=218  Identities=12%  Similarity=0.044  Sum_probs=146.4

Q ss_pred             hhcCCCC-cccccccc-C-----CChHHHHHHHHHHh--c-cCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 017569           51 MLDGNPR-LNLASFVT-T-----WMEPECDKLVMASI--N-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG  120 (369)
Q Consensus        51 ~~~~~p~-~~l~~~~~-~-----~~~~~v~~~~~~~~--~-~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~  120 (369)
                      ..+++|. ++|+.+.+ .     +..+.+.+++....  + .....|....+..++++++.+++   +|.+........+
T Consensus        44 ~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i  120 (448)
T 3meb_A           44 NADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRI  120 (448)
T ss_dssp             HHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCE
T ss_pred             HhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcE
Confidence            3455564 67766655 2     22356677655554  1 22334444567788888866665   3765200001247


Q ss_pred             EE--eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh----hhcceeEEEec-cCC-ccccCH
Q 017569          121 VG--TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR----YFEVELKEVKL-EEG-YYVMNP  192 (369)
Q Consensus       121 ~~--t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~----~~G~~v~~v~~-~~~-~~~~d~  192 (369)
                      ++  |+||++|+.+++......           ..+++|++++++|..+...++    ..|++++.+|+ +++ ++.+|+
T Consensus       121 ~~~~t~ggt~al~l~~~~~~~~-----------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~  189 (448)
T 3meb_A          121 ASCQSLSGTGSLHIGFEFLHLW-----------MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDF  189 (448)
T ss_dssp             EEEEESHHHHHHHHHHHHHHHH-----------CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCH
T ss_pred             EEEECCcHHHHHHHHHHHHHHh-----------CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCH
Confidence            88  999999998754322211           014689999999999999999    99999999998 554 589999


Q ss_pred             HHHHHHHhh---cCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCcccc-cc
Q 017569          193 VKAVELVDE---NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWD-FR  264 (369)
Q Consensus       193 ~~L~~~i~~---~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~-~~  264 (369)
                      ++|++++++   +++++++++++||||.+.+   +++|+++|+++      ++++++|++|+++...-.. +..... +.
T Consensus       190 e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~  263 (448)
T 3meb_A          190 SNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK------KHIAFFDSAYQGFATGSFEADAFAVRMFV  263 (448)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTSSSCHHHHTHHHHHHH
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCCcccCchhHHHHh
Confidence            999999985   5778889999999999865   66699999999      9999999999875531000 000111 10


Q ss_pred             CCCCc-EEEEcCccCCC-CCCCeEEE
Q 017569          265 LPLVK-SINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       265 ~~~~D-si~~~~hK~l~-~p~g~g~l  288 (369)
                      ..+.+ .++.+++|.++ ...+.|++
T Consensus       264 ~~~~~~i~~~S~SK~~g~~G~RiG~l  289 (448)
T 3meb_A          264 DAGVEVLVAQSFSKNFGLYGERIGCL  289 (448)
T ss_dssp             HTTCCEEEEEECTTTSCCGGGCCEEE
T ss_pred             hcCCcEEEEecccccCCCccccceee
Confidence            11233 44677999975 34668887

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.79  E-value=6.5e-18  Score=164.78  Aligned_cols=154  Identities=16%  Similarity=0.040  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH----hh
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RY  173 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~----~~  173 (369)
                      .++++.+++++|.+.       .+++++|++|+..++.++..+             +++|+++.++|.++...+    +.
T Consensus        61 ~~l~~~la~~~g~~~-------~v~~~sGt~A~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~~~~  120 (421)
T 2ctz_A           61 DVLEKRLAALEGGKA-------ALATASGHAAQFLALTTLAQA-------------GDNIVSTPNLYGGTFNQFKVTLKR  120 (421)
T ss_dssp             HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEECSCCCHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHhCCCc-------eEEecCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHH
Confidence            455566889998863       566777899999998876331             478999999999877665    67


Q ss_pred             hcceeEEE-eccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccc-cccc
Q 017569          174 FEVELKEV-KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS-GGFI  251 (369)
Q Consensus       174 ~G~~v~~v-~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~-~~~~  251 (369)
                      .|++++.+ +.+      |+++|+++|++++++|+++.++||+|.+.|+++|+++|+++      ++++|+|++| +.+.
T Consensus       121 ~g~~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~------g~~livD~~~~~~g~  188 (421)
T 2ctz_A          121 LGIEVRFTSREE------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMGGY  188 (421)
T ss_dssp             TTCEEEECCTTC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGGGT
T ss_pred             cCCEEEEECCCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCcccccc
Confidence            79888888 553      78999999999999999999999999999999999999999      9999999999 6442


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEe
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWR  291 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~  291 (369)
                      .   ..  ...   .++|.++.++||++++|.+ .|.++++
T Consensus       189 ~---~~--~~~---~~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          189 L---LR--PLA---WGAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             S---CC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             c---CC--ccc---cCCeEEEECCcccccCCCCcEEEEEEe
Confidence            1   11  122   2689999999999988663 6767775

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.79  E-value=3.6e-18  Score=167.80  Aligned_cols=175  Identities=14%  Similarity=0.054  Sum_probs=130.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc-
Q 017569           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-  164 (369)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h-  164 (369)
                      .|...++..+++++    +++++|.+.       +++|+||++|+.+++.++.++             ++  +++.++| 
T Consensus        70 ~y~~~~~~~~l~~~----la~~~~~~~-------~~~~~~gt~a~~~al~~l~~~-------------gd--i~~~~~~~  123 (456)
T 2ez2_A           70 AYAGSENFYHLERT----VQELFGFKH-------IVPTHQGRGAENLLSQLAIKP-------------GQ--YVAGNMYF  123 (456)
T ss_dssp             CSSSCHHHHHHHHH----HHHHHCCSE-------EEEESSHHHHHHHHHHHHCCT-------------TC--EEEESSCC
T ss_pred             hcccChhHHHHHHH----HHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC-------------CC--Eecccccc
Confidence            34445566666655    777888763       899999999999998887431             23  6778888 


Q ss_pred             chHHHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhhcC----cEEEEeeCCC-CcccCCC---HHHHHHH
Q 017569          165 VCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENT----ICVAAILGST-LTGEFED---VKLLHDL  227 (369)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~~----~~v~~~~~~~-~tG~~~~---l~~I~~l  227 (369)
                      .++..++...|++++.++++++         ++.+|+++|++++++++    ++|+++.|+| |+|.+.+   +++|+++
T Consensus       124 ~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~l  203 (456)
T 2ez2_A          124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVREL  203 (456)
T ss_dssp             HHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHH
T ss_pred             chhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHH
Confidence            7888889999999999998732         27899999999998876    7889998998 9998865   9999999


Q ss_pred             HHHhhhccCCCceEEeeccccccc--------ccccCCCccc----cccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          228 LTKKNEETGWDTPIHVDAASGGFI--------APFLYPDLEW----DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       228 ~~~~~~~~~~~~~l~vD~a~~~~~--------~~~~~~~~~~----~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |+++      ++++|+|++|+.+.        ..+ ......    ... ...|.+++++||+++.| ..|+++.++++.
T Consensus       204 a~~~------~i~li~De~~~~g~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~  274 (456)
T 2ez2_A          204 TEAH------GIKVFYDATRCVENAYFIKEQEQGF-ENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEM  274 (456)
T ss_dssp             HHHT------TCCEEEECTTHHHHHHHHHHHSTTC-TTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHH
T ss_pred             HHHc------CCeEEEEcccccccccccccccccc-CCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHH
Confidence            9999      99999999998631        111 111100    011 23688888899998755 468887754433

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.79  E-value=3.1e-18  Score=170.64  Aligned_cols=199  Identities=11%  Similarity=0.027  Sum_probs=144.8

Q ss_pred             HHHHHHHHhcc----CCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           72 CDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        72 v~~~~~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.+.+.+++..    ....|....+..++++++.+++++..| .+.+   ...+++|+|+++++.+++.++.+.      
T Consensus       106 ~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~---~~~i~~t~G~~~ai~~~~~~l~~~------  176 (498)
T 3ihj_A          106 AKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPAD---PDNIYLTTGASDGISTILKILVSG------  176 (498)
T ss_dssp             HHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCC---GGGEEEESSHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC---cccEEEcCCHHHHHHHHHHHHcCC------
Confidence            33444555543    234556667889999999999999885 6532   135899999999999988877441      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhh-----cCcEEEEeeCCCCcccC--
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-----NTICVAAILGSTLTGEF--  218 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~--  218 (369)
                        |. ..++.|+++.++|.++..+++..|+.++.++++++ +|.+|+++|++++++     ++++|++++|+||||.+  
T Consensus       177 --gd-~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s  253 (498)
T 3ihj_A          177 --GG-KSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS  253 (498)
T ss_dssp             --CG-GGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCC
T ss_pred             --CC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCC
Confidence              10 01248999999999999999999999999999753 589999999999987     58999999999999999  


Q ss_pred             -CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-C---------CCCcEEE-EcCccCCC--CCCC
Q 017569          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-L---------PLVKSIN-VSGHKYGL--VYAG  284 (369)
Q Consensus       219 -~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~---------~~~Dsi~-~~~hK~l~--~p~g  284 (369)
                       +++++|+++|+++      ++++++|++|+.+.+.  .......+. .         ..+..++ .+.+|.+.  ...+
T Consensus       254 ~~~l~~i~~la~~~------~~~li~De~y~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R  325 (498)
T 3ihj_A          254 RKCIEDVIHFAWEE------KLFLLADEVYQDNVYS--PDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR  325 (498)
T ss_dssp             HHHHHHHHHHHHHH------TCEEEEECTTTTCBCC--TTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSC
T ss_pred             HHHHHHHHHHHHHc------CcEEEEEcCccccccC--CCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccc
Confidence             4577899999999      9999999999876541  110111111 0         1233444 46899984  5678


Q ss_pred             eEEEEE
Q 017569          285 VGWVVW  290 (369)
Q Consensus       285 ~g~l~~  290 (369)
                      .|++++
T Consensus       326 ~G~~~~  331 (498)
T 3ihj_A          326 GGYMEV  331 (498)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            899885

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.78  E-value=2.9e-18  Score=166.23  Aligned_cols=214  Identities=11%  Similarity=0.010  Sum_probs=147.4

Q ss_pred             CCcccccccc------CCChHHHHHHHHH-HhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE--eCC
Q 017569           56 PRLNLASFVT------TWMEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVG  125 (369)
Q Consensus        56 p~~~l~~~~~------~~~~~~v~~~~~~-~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~G  125 (369)
                      ..++|+.+.+      .++++.+.+++.+ +++.. ...|....+..++++++.+++.+..|.+.+.   ..+++  |+|
T Consensus        30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~~~t~g  106 (412)
T 1yaa_A           30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE---DRVISVQSLS  106 (412)
T ss_dssp             SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEEEH
T ss_pred             CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCc---ceEEEEeccc
Confidence            3345555443      1345778888888 77632 2344455678889988887776555532110   24788  999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHhhc--
Q 017569          126 SSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDEN--  202 (369)
Q Consensus       126 gt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~--  202 (369)
                      |++|+.+++..+..-          . .+++|+++.++|..+...++..|++++.+|+ +++++.+|+++|+++++++  
T Consensus       107 ~~~a~~~~~~~~~~~----------~-~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  175 (412)
T 1yaa_A          107 GTGALHISAKFFSKF----------F-PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE  175 (412)
T ss_dssp             HHHHHHHHHHHHHHH----------C-TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred             hHhHHHHHHHHHHHh----------C-CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCC
Confidence            999998875443321          0 1468999999999999999999999999998 5445899999999999864  


Q ss_pred             -CcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeeccccccccccc-CCCccc-cccCCC----CcEEE
Q 017569          203 -TICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEW-DFRLPL----VKSIN  272 (369)
Q Consensus       203 -~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~-~~~~~~----~Dsi~  272 (369)
                       ++++++++++||||.+.   ++++|+++|+++      ++++++|++|+.+...-. .+.... ++...+    -+.++
T Consensus       176 ~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  249 (412)
T 1yaa_A          176 GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC  249 (412)
T ss_dssp             TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred             CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEE
Confidence             34555599999999985   477889999999      999999999976433100 000011 111112    24556


Q ss_pred             EcCccCCCC-CCCeEEEE
Q 017569          273 VSGHKYGLV-YAGVGWVV  289 (369)
Q Consensus       273 ~~~hK~l~~-p~g~g~l~  289 (369)
                      .+.+|.++. +.+.|+++
T Consensus       250 ~s~sK~~~~~GlriG~~~  267 (412)
T 1yaa_A          250 QSFAKNAGMYGERVGCFH  267 (412)
T ss_dssp             EECTTTSCCGGGCEEEEE
T ss_pred             eccCCCCCCcCCcceEEE
Confidence            678998853 34579887

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.78  E-value=6.4e-18  Score=163.09  Aligned_cols=220  Identities=13%  Similarity=0.022  Sum_probs=153.7

Q ss_pred             cCCCC-cccccccc-C-----CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE--
Q 017569           53 DGNPR-LNLASFVT-T-----WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--  122 (369)
Q Consensus        53 ~~~p~-~~l~~~~~-~-----~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--  122 (369)
                      ..+|. ++|+.+.+ .     +..+.+.+++.+..+. ....|....+..++++++.+++.+.+|.+.+.   ..+++  
T Consensus        25 ~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~v~  101 (401)
T 7aat_A           25 DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS---GRYVTVQ  101 (401)
T ss_dssp             CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEE
T ss_pred             CCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccccc---CceEEEe
Confidence            34443 56665554 2     1225677777776642 33444455678899999888887666643211   23665  


Q ss_pred             eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHh-
Q 017569          123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD-  200 (369)
Q Consensus       123 t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~-  200 (369)
                      |+||++|+.+++.+++...          ..++.|+++.++|..+...++..|++++.+|++ ++++.+|++++++.++ 
T Consensus       102 t~G~~~al~~~~~~l~~~~----------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  171 (401)
T 7aat_A          102 GISGTGSLRVGANFLQRFF----------KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK  171 (401)
T ss_dssp             EEHHHHHHHHHHHHHHHHC----------TTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             cCcchHHHHHHHHHHHHhc----------cCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh
Confidence            9999999999887765320          114689999999999999999999999999985 3358999998888776 


Q ss_pred             --hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCcccc-c-cCCCCcEEE
Q 017569          201 --ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWD-F-RLPLVKSIN  272 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~-~-~~~~~Dsi~  272 (369)
                        +++++|++++|+||||.+   +++++|+++|+++      ++++++|.+|..+...-.. +..... + ....-..++
T Consensus       172 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (401)
T 7aat_A          172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR------NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLS  245 (401)
T ss_dssp             SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEE
T ss_pred             CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEE
Confidence              467899999999999976   4588999999999      9999999999875431000 000010 1 122334566


Q ss_pred             EcCccCCC-CCCCeEEEEEe
Q 017569          273 VSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       273 ~~~hK~l~-~p~g~g~l~~~  291 (369)
                      .+++|.++ .+.+.|++++.
T Consensus       246 ~S~sK~~~~~G~RiG~l~~~  265 (401)
T 7aat_A          246 QSYAKNMGLYGERAGAFTVI  265 (401)
T ss_dssp             EECTTTSCCGGGCEEEEEEE
T ss_pred             ecCCcccccccCceEEEEEE
Confidence            78999985 44568998863

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.78  E-value=7.3e-18  Score=162.35  Aligned_cols=254  Identities=11%  Similarity=-0.081  Sum_probs=161.9

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++.+++.........+  ......++++++++++|.+.     ..+++|+||++|+..++.+++...      
T Consensus        62 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~~a~~~al~~~~~~~------  128 (395)
T 1vef_A           62 GNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAHT------  128 (395)
T ss_dssp             TCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCc-----CEEEEcCcHHHHHHHHHHHHHHHh------
Confidence            55778888888876432211111  23455677778999997654     248999999999999998765210      


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHhhhcceeE---EEeccCCc---cccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC
Q 017569          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVELK---EVKLEEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h-~s~~~~~~~~G~~v~---~v~~~~~~---~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (369)
                           .+++|++++++| .++..++...|..+.   .+|+..+.   ...|+++|++++++++++|+++.++++||.+.|
T Consensus       129 -----~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  203 (395)
T 1vef_A          129 -----GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPA  203 (395)
T ss_dssp             -----SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEEC
T ss_pred             -----CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCC
Confidence                 135677777665 455556666666521   11221110   014899999999988888888888889998877


Q ss_pred             ----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          221 ----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       221 ----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                          +++|+++|+++      ++++|+|++|+++..  .......+..-..+|.++  .+|+++++.+.|+++++++ ..
T Consensus       204 ~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~d~~s--~sK~~~~g~~~G~~~~~~~-~~  272 (395)
T 1vef_A          204 TPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGIVPDILT--LAKALGGGVPLGVAVMREE-VA  272 (395)
T ss_dssp             CHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEE--ECGGGGTTSSCEEEEEEHH-HH
T ss_pred             CHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CCchhHhhhcCCCCCEEE--EcccccCCCceEEEEehHH-HH
Confidence                99999999999      999999999985321  111111121122467775  5999888888999998753 22


Q ss_pred             ccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCC
Q 017569          297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       297 ~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~  361 (369)
                       ..+..  .   ..  ..+  .+.+.....++..+++.+..+++.+ +..++++++++.|++.+.
T Consensus       273 -~~l~~--~---~~--~~~--~~~~~~~~~a~~~al~~~~~~~~~~-~~~~~~~~l~~~l~~~~~  326 (395)
T 1vef_A          273 -RSMPK--G---GH--GTT--FGGNPLAMAAGVAAIRYLERTRLWE-RAAELGPWFMEKLRAIPS  326 (395)
T ss_dssp             -HTSCT--T---SS--CCS--STTCHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHTSCC
T ss_pred             -hhhcc--C---Cc--CCC--cCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhhc
Confidence             22211  0   00  001  1222333445556666654422211 788899999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.78  E-value=1.9e-18  Score=168.96  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC-CCcchHHHHHh--
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKFAR--  172 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~-~~h~s~~~~~~--  172 (369)
                      ..+++.+++++++|.+...   . .++.++|++|+..++.++.++             +++|+++. +.|.++...+.  
T Consensus        66 ~~~~l~~~la~~~g~~~~~---~-~i~~~sGt~Ai~~al~al~~~-------------Gd~Vl~~~~~~y~~~~~~~~l~  128 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGL---V-RPQIISGTHAISTALFGILRP-------------GDELLYITGKPYDTLEEIVGVR  128 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEEC---C-BTTSCSHHHHHHHHHHTTCCT-------------TCEEEECSSSCCTTHHHHTTSS
T ss_pred             hHHHHHHHHHHHhCCCccc---c-cceeeCHHHHHHHHHHHhCCC-------------CCEEEEeCCCCchhHHHHHhhc
Confidence            3667778899999998521   1 122447799999888776432             46899988 88988886654  


Q ss_pred             --------hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee----CCCCcccCCCHHHHHHHHHH--hhhccCCC
Q 017569          173 --------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGWD  238 (369)
Q Consensus       173 --------~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~----~~~~tG~~~~l~~I~~l~~~--~~~~~~~~  238 (369)
                              ..|++++.+|.+++ +.+|+++|+++++++|++|+++.    |++++|.+.++++|+++|++  +      +
T Consensus       129 g~~~~~~~~~G~~~~~v~~~~~-~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~------~  201 (431)
T 3ht4_A          129 GKGVGSFKEYNIGYNAVPLTEG-GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP------D  201 (431)
T ss_dssp             SCSSSCSGGGTCEEEECCBCTT-SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------T
T ss_pred             ccccchHHHcCCEEEEeCCCCC-CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC------C
Confidence                    47899999999875 89999999999999999999996    55666667899999999999  9      9


Q ss_pred             ceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC---CCCeEEEEEeCCCCccccccc--ccCccCCCCCC
Q 017569          239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWRTKDDLPDELVF--HINYLGSDQPT  313 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~---p~g~g~l~~~~~~~~~~~~~~--~~~y~~~~~~~  313 (369)
                      +++++|++|+.+..+   .+ +..   .++|.++.+++|++++   |.| |+++.++ +.. +.+..  .....+... .
T Consensus       202 ~~livDea~~~~~~~---~~-~~~---~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li-~~l~~~~~~~~~g~~~-~  270 (431)
T 3ht4_A          202 VVVFVDNCYGEFIEE---QE-PCH---VGADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYV-EACAYRLTSPGIGAEA-G  270 (431)
T ss_dssp             CEEEEECTTCTTSSS---CC-GGG---TTCSEEEEETTSGGGTTTCSSC-EEEEECH-HHH-HHHHHHHSCTTTTTSC-S
T ss_pred             CEEEEeCCChhhccC---CC-ccc---cCCeEEEcCccccCCCCCCCce-EEEEecH-HHH-HHHHHHhccCCccccc-C
Confidence            999999999976531   11 122   2689999999999655   566 8887743 222 22211  111111100 0


Q ss_pred             ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          314 FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       314 ~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                          .+...     .|..++.+  +....+  +..++++++++.|+++|+
T Consensus       271 ----~~~~~-----~~~~~~~l--~~~~~~~~~~~~~a~~l~~~L~~~g~  309 (431)
T 3ht4_A          271 ----ASLYS-----LQEMYQGF--FLAPHVAGQALKGAIFTAAFLEKLGM  309 (431)
T ss_dssp             ----CCCSC-----SHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----ccHHH-----HHHHHhHh--hhHHHHHHHHHHHHHHHHHHHHhCcC
Confidence                01111     11222222  122333  889999999999999986

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.78  E-value=2.3e-18  Score=165.68  Aligned_cols=211  Identities=11%  Similarity=-0.027  Sum_probs=147.1

Q ss_pred             Ccccccccc------CCChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE--eCCch
Q 017569           57 RLNLASFVT------TWMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSS  127 (369)
Q Consensus        57 ~~~l~~~~~------~~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~Ggt  127 (369)
                      .++|+.+.+      .++++.+.+++.+.++. ....|....+..++++++.+++... +.++     ..+++  |+||+
T Consensus        28 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~-----~~v~~~~~~g~~  101 (394)
T 2ay1_A           28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKS-----ETTATLATVGGT  101 (394)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCG-----GGEEEEEEEHHH
T ss_pred             ccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCc-----ccEEEEecCCch
Confidence            345555542      13457788888877653 2334444456788888876666321 2232     24777  99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhc---C
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDEN---T  203 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~---~  203 (369)
                      +|+..++.+++...           .+++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++.   +
T Consensus       102 ~a~~~~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  170 (394)
T 2ay1_A          102 GALRQALELARMAN-----------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGD  170 (394)
T ss_dssp             HHHHHHHHHHHHHC-----------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTC
T ss_pred             hHHHHHHHHHHhcC-----------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCC
Confidence            99999988775410           146899999999999999999999999999852 35889999999999763   5


Q ss_pred             cEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCc-EEEEcCccC
Q 017569          204 ICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVK-SINVSGHKY  278 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~D-si~~~~hK~  278 (369)
                      ++++++.++||||.+.+   +++|+++|+++      ++++++|++|+++....-.+..... +...+.+ .+..+.+|+
T Consensus       171 ~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  244 (394)
T 2ay1_A          171 MVLLHGCCHNPTGANLTLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKN  244 (394)
T ss_dssp             EEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTT
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCC
Confidence            67778999999999864   66889999999      9999999999875431000000111 1111223 445578999


Q ss_pred             CC-CCCCeEEEEE
Q 017569          279 GL-VYAGVGWVVW  290 (369)
Q Consensus       279 l~-~p~g~g~l~~  290 (369)
                      ++ .+.++|++++
T Consensus       245 ~~~~G~riG~~~~  257 (394)
T 2ay1_A          245 FGIYRERTGCLLA  257 (394)
T ss_dssp             TTCGGGCEEEEEE
T ss_pred             CcCcCCccceEEE
Confidence            86 4456799987

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.77  E-value=7.4e-18  Score=161.82  Aligned_cols=200  Identities=16%  Similarity=0.112  Sum_probs=144.8

Q ss_pred             HHHHHHhhhhcCC-CCcccccccc-CCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe
Q 017569           43 YQVINDELMLDGN-PRLNLASFVT-TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG  120 (369)
Q Consensus        43 ~~~l~~~~~~~~~-p~~~l~~~~~-~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~  120 (369)
                      .+.+...+...++ +.+++....+ .+.++.+.+++.     +..      +...+++++.+++++++|.+..    ...
T Consensus        15 ~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~~------~~~~~~~~~~~~~a~~~g~~~~----~~~   79 (374)
T 2aeu_A           15 RKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TYI------GSSYFAEKVNEYGLKHLGGDEN----DKC   79 (374)
T ss_dssp             HHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----STT------HHHHHHHHHHHHHHHHHTCCTT----EEE
T ss_pred             HHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hhc------CchHHHHHHHHHHHHHhCCCCc----ceE
Confidence            3345555545565 6777665543 344577777764     111      1245677888889999998420    237


Q ss_pred             EEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCC---cchHHHHHhhhcceeEEEeccCCccccCHHHHHH
Q 017569          121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV---QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE  197 (369)
Q Consensus       121 ~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~---h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~  197 (369)
                      ++++||++|+..++.++  +             +++|+++.++   |+++...++..|++++.+        .|+++|++
T Consensus        80 ~~~~ggt~a~~~~~~~~--~-------------gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~~  136 (374)
T 2aeu_A           80 VGFNRTSSAILATILAL--K-------------PKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEILN  136 (374)
T ss_dssp             EEESSHHHHHHHHHHHH--C-------------CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHHT
T ss_pred             EEEcChHHHHHHHHHhC--C-------------CCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHHh
Confidence            99999999999998876  2             4789999984   444444677889888777        27899998


Q ss_pred             HHhhcCcE-EEEeeCCCCcc-cCCCHHHHHHHHHHhhhccCCCceEEeecccccccc-cccCCCccccccCCCCcEEEEc
Q 017569          198 LVDENTIC-VAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       198 ~i~~~~~~-v~~~~~~~~tG-~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                      + ++++++ |++++++||+| ...++++|.++|+++      ++++|+|++|+.+.. +...+ ....   .++|.++.+
T Consensus       137 ~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~-~~~~---~~~di~~~S  205 (374)
T 2aeu_A          137 K-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVRLLFNQP-PALK---LGADLVVTS  205 (374)
T ss_dssp             T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHTTCC-CHHH---HTCSEEEEE
T ss_pred             c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc------CCEEEEECCcccccccccccC-Cccc---cCCcEEEec
Confidence            8 778999 99999999999 889999999999999      999999999987531 11110 0111   257899999


Q ss_pred             CccCCCCCCCeEEEEEeC
Q 017569          275 GHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       275 ~hK~l~~p~g~g~l~~~~  292 (369)
                      +||++.+ ++.|+++.++
T Consensus       206 ~sK~l~g-~~~G~~~~~~  222 (374)
T 2aeu_A          206 TDKLMEG-PRGGLLAGKK  222 (374)
T ss_dssp             TTSSSSS-CSCEEEEEEH
T ss_pred             CcccccC-cceEEEEECH
Confidence            9999765 5889988764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.77  E-value=2.6e-18  Score=166.44  Aligned_cols=228  Identities=14%  Similarity=0.056  Sum_probs=152.2

Q ss_pred             HHHHHHHhhhhcC-CCCccccccccCCCh---HHHHHHHHHHhccCC-----CCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 017569           42 AYQVINDELMLDG-NPRLNLASFVTTWME---PECDKLVMASINKNY-----VDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        42 i~~~l~~~~~~~~-~p~~~l~~~~~~~~~---~~v~~~~~~~~~~n~-----~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      +.+.+.+...... ...++|+.+.|...+   +.+.+++.+.+.++.     ..|....+..++++++.+++.+.+|.+.
T Consensus        17 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~   96 (417)
T 3g7q_A           17 ITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDI   96 (417)
T ss_dssp             HHHHHHHHHC-----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhhccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence            4444444444322 334677777776543   345666666654321     2455566888999999999998888764


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEec-CCCcchHHHHHh----hhcceeEEEeccC--
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFAR----YFEVELKEVKLEE--  185 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s-~~~h~s~~~~~~----~~G~~v~~v~~~~--  185 (369)
                      +   ...+++|+|+++|+.+++.++..+        |.+.++.+|+++ .++|..+...+.    ..+..+..++++.  
T Consensus        97 ~---~~~i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (417)
T 3g7q_A           97 E---PQNIALTNGSQSAFFYLFNLFAGR--------RADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ  165 (417)
T ss_dssp             C---GGGEEEESCHHHHHHHHHHHHSBC------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE
T ss_pred             C---cccEEEeCCcHHHHHHHHHHHcCC--------CccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc
Confidence            2   246899999999999999887542        211112278888 899988876653    2233344444432  


Q ss_pred             CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc
Q 017569          186 GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (369)
Q Consensus       186 ~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (369)
                      .++.+|+++|+  +++++++|++++|+||||.+.+   +++|+++|+++      ++++|+|++|+.+........  ..
T Consensus       166 ~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~------~~~li~De~~~~~~~~~~~~~--~~  235 (417)
T 3g7q_A          166 FKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH------NIPLVIDNAYGVPFPGIIFSE--AR  235 (417)
T ss_dssp             EEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCSC--CC
T ss_pred             cccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc------CCEEEEeCCCccccccccccc--cc
Confidence            24688999998  7778999999999999999977   89999999999      999999999985322100000  00


Q ss_pred             ccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          263 FRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       263 ~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ......+.+..+.+|++..+.+.|+++.
T Consensus       236 ~~~~~~~i~~~s~sK~~~~G~r~G~~~~  263 (417)
T 3g7q_A          236 PLWNPNIILCMSLSKLGLPGSRCGIIIA  263 (417)
T ss_dssp             CCCCTTEEEEEESGGGTCTTSCCEEEEC
T ss_pred             cCCCCCEEEEEechhccCCCcceEEEEe
Confidence            1123567778889998777778998876

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.77  E-value=2.3e-18  Score=166.31  Aligned_cols=252  Identities=13%  Similarity=-0.004  Sum_probs=166.0

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE-eCCchHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      +.++++.+.+++.++.+........++...++.+++++++++++|++..    ..+++ |+||++|+.+++.++.+    
T Consensus        48 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~i~~~t~g~t~al~~~~~~l~~----  119 (398)
T 2fyf_A           48 PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG----YEVILGNGGATAFWDAAAFGLID----  119 (398)
T ss_dssp             SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----CEEEEEETCHHHHHHHHHHHTCS----
T ss_pred             CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEeCCchhHHHHHHHHHhcC----
Confidence            4445677777766532111111123455667778899999999999731    24777 99999999999888632    


Q ss_pred             HHHhcCCCCCCCeEEecCCCcch-HHHHHhhh--cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC
Q 017569          144 KRKEQGKPYDKPNIVTGANVQVC-WEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED  220 (369)
Q Consensus       144 ~~~~~g~~~~~~~Vi~s~~~h~s-~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~  220 (369)
                                +..++++...|.. +...+...  |+.++.||++. +..++.     .++++|++|++++++||||.+.|
T Consensus       120 ----------~gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~  183 (398)
T 2fyf_A          120 ----------KRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP-GSAPEP-----QTDPSVDVIAWAHNETSTGVAVA  183 (398)
T ss_dssp             ----------SCEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT-TCCCCC-----CCCTTCSEEEEESEETTTTEECC
T ss_pred             ----------CCeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC-CCCCCc-----cccCCCCEEEEeCcCCCcceecc
Confidence                      1224445544532 22244555  88899999873 233342     25678999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL  300 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  300 (369)
                      +++|.++   +      ++++|+|++|+.+..+       .++.  .+|.++.++||++++|.|+|+++++++ .. ..+
T Consensus       184 ~~~i~~~---~------~~~vivD~a~~~~~~~-------~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~-~~-~~l  243 (398)
T 2fyf_A          184 VRRPEGS---D------DALVVIDATSGAGGLP-------VDIA--ETDAYYFAPQKNFASDGGLWLAIMSPA-AL-SRI  243 (398)
T ss_dssp             CCCCTTC---C-------CEEEEECTTTTTTSC-------CCGG--GCSEEEECTTSTTCSCSSEEEEEECHH-HH-HHH
T ss_pred             hHHhhhh---c------CCeEEEEeccccCCcc-------cCcc--cCcEEEEecCcccCCCCceEEEEECHH-HH-HHh
Confidence            9998887   7      9999999999865432       1222  479999999999987767999888642 22 111


Q ss_pred             cc-------ccCccCCCC--C---CccccCCcchhHHHHHHHHHHHhcHhh-HHHH--HhhHHHHHHHHHHHhcC
Q 017569          301 VF-------HINYLGSDQ--P---TFTLNFSKGSSQIIAQYYQFIRLGFEV-IPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       301 ~~-------~~~y~~~~~--~---~~~l~~tr~~~~~l~~~~~l~~lg~~G-~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      ..       ...|.....  .   .....++.+....+++..+++.+..+| ++++  +..++++++.+.|++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~  318 (398)
T 2fyf_A          244 EAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP  318 (398)
T ss_dssp             HHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            00       011221100  0   001114555555667778888877776 7777  88999999999999873

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.64  E-value=2.4e-20  Score=179.85  Aligned_cols=214  Identities=11%  Similarity=-0.049  Sum_probs=156.0

Q ss_pred             ccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.+. ++++.+.+++.++++.....|...  ..++++++.+++++.+|.+.+.   ..+++|+||++|+.+++.+
T Consensus        34 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~~~  108 (392)
T 3b1d_A           34 LPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK---EDIVFVEGVVPAISIAIQA  108 (392)
Confidence            344444443 335678888887776543333322  7788999999998888854321   3489999999999999888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CC-ccccCHHHHHHHHh-hcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (369)
                      +..+             +++|+++.++|..+...++..|++++.+|++ ++ ++.+|+++|+++++ +++++|+++.++|
T Consensus       109 ~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~n  175 (392)
T 3b1d_A          109 FTKE-------------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHN  175 (392)
Confidence            7543             3689999999999999999999999999985 32 36799999999997 6788888999999


Q ss_pred             CcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC--CCCcEEEEcCccCCC-CCCCeEE
Q 017569          214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL--PLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       214 ~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      |+|.+.   ++++|+++|+++      ++++++|++|+.+...--.......+..  ...+.+..+.+|+++ .+.+.|+
T Consensus       176 ptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  249 (392)
T 3b1d_A          176 PGGRVWEREVLEQIGHLCQKH------HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSY  249 (392)
Confidence            999985   499999999999      9999999999876541000000011110  233456677999986 5667899


Q ss_pred             EEEeCCCC
Q 017569          288 VVWRTKDD  295 (369)
Q Consensus       288 l~~~~~~~  295 (369)
                      +++++++.
T Consensus       250 ~~~~~~~~  257 (392)
T 3b1d_A          250 AIIENPTL  257 (392)
Confidence            98865433

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.77  E-value=6e-17  Score=155.77  Aligned_cols=253  Identities=10%  Similarity=-0.063  Sum_probs=159.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+.........+  .....+++++++++++|.+       ..++++||++|+..++.+++.....   .
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~~gt~a~~~al~~~~~~~~~---~  120 (392)
T 3ruy_A           53 RHPKIINALIDQANRVTLTSRAF--HSDQLGPWYEKVAKLTNKE-------MVLPMNTGAEAVETAIKTARRWAYD---V  120 (392)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTS--EETTHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHhcCCC-------EEEEeCcHHHHHHHHHHHHHHhhhh---c
Confidence            35788888888876543322222  2234456677799999844       3899999999999999987653211   1


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcc-------------eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .|.+..+++|+++.++|......+..++.             ++..++.+      |+++|++++++++++|+++.++||
T Consensus       121 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~~~~v~~~~~~np  194 (392)
T 3ruy_A          121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG------DLEALKAAITPNTAAFILEPIQGE  194 (392)
T ss_dssp             SCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT------CHHHHHHHCCTTEEEEEECSSBST
T ss_pred             cCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc------cHHHHHHHhccCeEEEEEeCccCC
Confidence            12222346899988887654433332221             13333321      799999999989999999999999


Q ss_pred             cccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEEE
Q 017569          215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVV  289 (369)
Q Consensus       215 tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l~  289 (369)
                      +|.+.|    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++  |.+.++ .+.|+++
T Consensus       195 tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~  264 (392)
T 3ruy_A          195 AGINIPPAGFLKEALEVCKKE------NVLFVADEIQTGLGR--TGKVFACDWDNVTPDMYILG--KALGGGVFPISCAA  264 (392)
T ss_dssp             TTSBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCc--cccchhhhccCCCCCEEEEc--hhhhCChhhhEEEE
Confidence            999988    99999999999      999999999975322  11111112212246888875  887554 5689888


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      .+++ .. ..+..   . .   ...+  .+.+.....++..+++.+..+.+.+ +..++++++++.|++.+
T Consensus       265 ~~~~-~~-~~~~~---~-~---~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~l~~~L~~~~  323 (392)
T 3ruy_A          265 ANRD-IL-GVFEP---G-S---HGST--FGGNPLACAVSIAALEVLEEEKLTE-RSLQLGEKLVGQLKEID  323 (392)
T ss_dssp             ECHH-HH-TTCCT---T-S---SCCS--STTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHTTCC
T ss_pred             ECHH-HH-hhhcc---C-C---cCCC--CCCCHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhc
Confidence            7542 21 11100   0 0   0001  1222333444445555543322111 88899999999999875

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.76  E-value=6.9e-18  Score=165.16  Aligned_cols=216  Identities=13%  Similarity=0.074  Sum_probs=151.2

Q ss_pred             CCc-cccccccCCCh---HHHHHHHHHHhcc-------C-----CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 017569           56 PRL-NLASFVTTWME---PECDKLVMASINK-------N-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV  119 (369)
Q Consensus        56 p~~-~l~~~~~~~~~---~~v~~~~~~~~~~-------n-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~  119 (369)
                      ..+ +|+.+.|...+   +.+.+++.+.+.+       .     ...|....+..++++++.+++.+.+|.+.+   ...
T Consensus        32 ~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~---~~~  108 (444)
T 3if2_A           32 QPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT---SEN  108 (444)
T ss_dssp             SCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC---GGG
T ss_pred             hhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC---HHH
Confidence            346 67777776543   2345556655544       1     133445567889999999999988887642   245


Q ss_pred             eEEeCCchHHHHHHHHHHHHHHHHHHHhcCC-----CCCCC----eEEec-CCCcchHHHHH------hhhcceeEEEec
Q 017569          120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK-----PYDKP----NIVTG-ANVQVCWEKFA------RYFEVELKEVKL  183 (369)
Q Consensus       120 ~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~-----~~~~~----~Vi~s-~~~h~s~~~~~------~~~G~~v~~v~~  183 (369)
                      +++|+||++|+.+++.++..+        |.     ...++    +|+++ .++|..+...+      ...|..+..+++
T Consensus       109 i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (444)
T 3if2_A          109 IALTNGSQNAFFYLFNLFGGA--------FVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH  180 (444)
T ss_dssp             EEEESSHHHHHHHHHHHSSEE--------EECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEE
T ss_pred             EEEecCcHHHHHHHHHHHhCC--------CccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccc
Confidence            999999999999998887432        10     00001    57776 78888776643      334667777887


Q ss_pred             cCC----ccccCHHHHHHH---HhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeeccccccccc
Q 017569          184 EEG----YYVMNPVKAVEL---VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (369)
Q Consensus       184 ~~~----~~~~d~~~L~~~---i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (369)
                      +++    ++.+|+++|+++   +++++++|+++.|+||||.+.|   +++|+++|+++      ++++|+|++|+.+...
T Consensus       181 ~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~  254 (444)
T 3if2_A          181 DGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY------DIPLIIDNAYGMPFPN  254 (444)
T ss_dssp             TTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTC
T ss_pred             ccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC------CCEEEEECCCCCcccc
Confidence            642    258999999998   6778999999999999999988   88999999999      9999999999853221


Q ss_pred             ccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       254 ~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      ....  .........+.+..+.+|++..+.+.|+++.
T Consensus       255 ~~~~--~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~  289 (444)
T 3if2_A          255 IIYS--DAHLNWDNNTILCFSLSKIGLPGMRTGIIVA  289 (444)
T ss_dssp             CBCS--CCCCCCCTTEEEEEESTTTTCGGGCCEEEEC
T ss_pred             cccc--cccccCCCCEEEEechhhccCCCCceEEEEE
Confidence            0000  0111123567888899999766788898875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.76  E-value=1.6e-17  Score=166.76  Aligned_cols=214  Identities=14%  Similarity=0.055  Sum_probs=153.0

Q ss_pred             cccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhC--CCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           59 NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        59 ~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      +|+.+.+..+++.+.+.+.+.+..+ .++....+..++++++.+++++.++  .+.+  ....+++|+||++|+.+++.+
T Consensus       107 ~l~~g~~~~~~~~~v~a~~~~~~~~-~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~~~~i~~t~G~t~al~~~~~~  183 (533)
T 3f6t_A          107 NYCHTELGLNRDKVVAEWVNGAVAN-NYPVPDRCLVNTEKIINYFLQELSYKDANLA--EQTDLFPTEGGTAAIVYAFHS  183 (533)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHTC-SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCG--GGEEEEEEEHHHHHHHHHHHH
T ss_pred             eccCCCCCcCCcHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHhcCCCCCCC--CcceEEEECCHHHHHHHHHHH
Confidence            4444445444555544444444332 2233456789999999999977733  3321  013589999999999998887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc---CCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +...        +.-..+++|+++.++|.++...++..|++++.++++   ++++.+|+++|++++++++++|++++|+|
T Consensus       184 l~~~--------~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~N  255 (533)
T 3f6t_A          184 LAEN--------HLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTN  255 (533)
T ss_dssp             HHHT--------TSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCT
T ss_pred             hhhh--------hccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCC
Confidence            4321        001124799999999999999999999999999985   34589999999999999999999999999


Q ss_pred             CcccCCCHH---HHHHHHH-HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEE
Q 017569          214 LTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWV  288 (369)
Q Consensus       214 ~tG~~~~l~---~I~~l~~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l  288 (369)
                      |||.+.+.+   +|+++|+ ++      ++++++|++|+.+...+  .  ...-.....+.++.+.+|.++ ..+.+|++
T Consensus       256 PtG~~~~~~~l~~l~~la~~~~------~~~li~De~y~~~~~~~--~--~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l  325 (533)
T 3f6t_A          256 PTSKEFDTNALNAIKQAVEKNP------KLMIISDEVYGAFVPNF--K--SIYSVVPYNTMLVYSYSKLFGCTGWRLGVI  325 (533)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHCT------TCEEEEECTTGGGSTTC--C--CHHHHSGGGEEEEEESHHHHTCGGGCEEEE
T ss_pred             CCccccCHHHHHHHHHHHHhCC------CCEEEEcCCccccccCc--c--CHhhcCCCCEEEEecCcccCCCcccceEEE
Confidence            999997655   7888888 68      99999999998754311  1  111112245577888999975 44568999


Q ss_pred             EEeCC
Q 017569          289 VWRTK  293 (369)
Q Consensus       289 ~~~~~  293 (369)
                      ++++.
T Consensus       326 ~~~~~  330 (533)
T 3f6t_A          326 ALNEK  330 (533)
T ss_dssp             EEESS
T ss_pred             EECcH
Confidence            98765

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.76  E-value=7.3e-18  Score=163.38  Aligned_cols=210  Identities=12%  Similarity=0.043  Sum_probs=148.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH-----hh
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-----RY  173 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~-----~~  173 (369)
                      ++++.++++.|.+.       .+++++|++|+.. +..+.+             .+++|+++.+.|......+     ..
T Consensus        71 ~l~~~la~l~g~~~-------~~~~~sG~~Ai~~-~~~l~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~~~  129 (400)
T 3nmy_A           71 AYERCVAALEGGTR-------AFAFASGMAATST-VMELLD-------------AGSHVVAMDDLYGGTFRLFERVRRRT  129 (400)
T ss_dssp             HHHHHHHHHHTCSE-------EEEESSHHHHHHH-HHTTSC-------------TTCEEEEESSCCHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhCCCC-------EEEecCHHHHHHH-HHHHcC-------------CCCEEEEeCCCchHHHHHHHHhhHhh
Confidence            44455888998763       6788888999876 333222             1468999999998544443     33


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (369)
                      .|++++.++.+      |+++|++++++++++|++..++||+|.+.|+++|+++|+++      ++++++|++|+.+.. 
T Consensus       130 ~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~------g~~livDe~~~~~~~-  196 (400)
T 3nmy_A          130 AGLDFSFVDLT------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH------GLLTVVDNTFASPML-  196 (400)
T ss_dssp             HCCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHHH-
T ss_pred             cCeEEEEECCC------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence            58888888764      78999999999999999999999999999999999999999      999999999985443 


Q ss_pred             ccCCCccccccCCCCcEEEEcCccCCCCCC-C-eE-EEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYA-G-VG-WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       254 ~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~-g-~g-~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                       ..+   ..   .++|.++.+++|++++|. . .| +++.++++.. +.+.......+          .  ....+..|.
T Consensus       197 -~~~---~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~-~~l~~~~~~~g----------~--~~~~~~a~~  256 (400)
T 3nmy_A          197 -QRP---LS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELA-EQMAFLQNSIG----------G--VQGPFDSFL  256 (400)
T ss_dssp             -CCG---GG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH-HHHHHHHHHHC----------C--BCCHHHHHH
T ss_pred             -CCh---hh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHH-HHHHHHHHhcC----------C--CCCHHHHHH
Confidence             111   22   278999999999998773 2 35 4554443222 12111111111          1  113566777


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                      .++.+.  .+..+  +..+++++++++|++.+.+++
T Consensus       257 ~l~~l~--~l~~r~~~~~~~a~~l~~~L~~~p~v~~  290 (400)
T 3nmy_A          257 ALRGLK--TLPLRMRAHCENALALAQWLETHPAIEK  290 (400)
T ss_dssp             HHHHHT--THHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHhHh--HHHHHHHHHHHHHHHHHHHHHcCCCEeE
Confidence            777653  34433  889999999999998876654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.76  E-value=3.3e-18  Score=166.38  Aligned_cols=212  Identities=13%  Similarity=0.000  Sum_probs=148.5

Q ss_pred             CCccccccccCC----ChHHHHHHHH--HHhccC--CCCC-CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           56 PRLNLASFVTTW----MEPECDKLVM--ASINKN--YVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        56 p~~~l~~~~~~~----~~~~v~~~~~--~~~~~n--~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      ..++|+.+.|.+    .++.+.+++.  +++...  ...| ....+..+++++    +++++++++     ..+++|+|+
T Consensus        26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~----ia~~~~~~~-----~~i~~t~G~   96 (423)
T 3ez1_A           26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARAL----FAGYLDVKA-----ENVLVWNNS   96 (423)
T ss_dssp             CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHH----HHHHTTSCG-----GGEEECSSC
T ss_pred             ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHH----HHHHhCCCh-----hhEEEeCCc
Confidence            346677766652    2335666654  444322  2344 445567777766    677778775     358999999


Q ss_pred             hHHHH--HHHHHHHH--HHHHHHHhcCCCC----CCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHH
Q 017569          127 SEAIM--LAGLAFKR--KWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVEL  198 (369)
Q Consensus       127 t~a~~--~al~~~~~--~~~~~~~~~g~~~----~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~  198 (369)
                      ++++.  +++.++..  +        |...    .+++|+++.++|..+...++..|++++.+|++++  .+|+++|+++
T Consensus        97 ~~al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~--g~d~~~l~~~  166 (423)
T 3ez1_A           97 SLELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD--GPDVDAVERL  166 (423)
T ss_dssp             HHHHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT--EECHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC--CCCHHHHHHH
Confidence            99997  77776643  1        1000    0368999999999999999999999999999875  4999999999


Q ss_pred             Hh--hcCcEEEEe-eCCCCcccCCCHH---HHHHHH-HHhhhccCCCceEEeecccccccccc--cCCC-ccccc----c
Q 017569          199 VD--ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPF--LYPD-LEWDF----R  264 (369)
Q Consensus       199 i~--~~~~~v~~~-~~~~~tG~~~~l~---~I~~l~-~~~~~~~~~~~~l~vD~a~~~~~~~~--~~~~-~~~~~----~  264 (369)
                      ++  +++++|+++ +++||||.+.+.+   +|+++| +++      ++++|+|++|+...+..  ..+. ....+    .
T Consensus       167 l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~  240 (423)
T 3ez1_A          167 AGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP------DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAG  240 (423)
T ss_dssp             HHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST------TCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHT
T ss_pred             HhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc------CCEEEEECCcchhhcCCCCCCCCcchhhhhhccC
Confidence            94  678888655 8899999997766   888888 889      99999999998532210  0000 00111    1


Q ss_pred             CCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          265 LPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       265 ~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      ....+.+..+++|+++.+.+.|+++..+
T Consensus       241 ~~~~~i~~~S~sK~~~~G~r~G~~~~~~  268 (423)
T 3ez1_A          241 YPDRAFVFASTSKITFAGAGLGFVASSE  268 (423)
T ss_dssp             CTTSEEEEEESTTTSCSSSSCEEEEECH
T ss_pred             CCCeEEEEeCchhhccCCcceEEEEeCH
Confidence            2345677788999877888999988753

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.76  E-value=3.2e-17  Score=159.11  Aligned_cols=215  Identities=13%  Similarity=-0.014  Sum_probs=152.3

Q ss_pred             CCcccccccc------CCChHHHHHHHHHHh-cc-CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch
Q 017569           56 PRLNLASFVT------TWMEPECDKLVMASI-NK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        56 p~~~l~~~~~------~~~~~~v~~~~~~~~-~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (369)
                      ..+||+.+.+      .++++.+.++.. .+ +. ....|....|..+|++++.+|+.+..+...+. +...+++|+||+
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~i~i~~t~G~~  107 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED-KKICTIQCIGGT  107 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT-TCEEEEEEEHHH
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc-cceEEEEcCchH
Confidence            3468876652      123466777766 43 22 34566777899999999999986544433211 111368999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHhh--cCc
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE--NTI  204 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~--~~~  204 (369)
                      +|+.+++.++.+-           .. ++|++++|+|..+...++..|++++.+|+ +++++.+|+++|++++++  +++
T Consensus       108 ~al~~~~~~l~~~-----------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  175 (405)
T 3k7y_A          108 GAIFVLLEFLKML-----------NV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGS  175 (405)
T ss_dssp             HHHHHHHHHHHTT-----------TC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhc-----------CC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCe
Confidence            9999988877541           12 68999999999999999999999999998 454589999999999975  467


Q ss_pred             EEEEeeC-CCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cc-cccCCCCcEEE-EcCcc
Q 017569          205 CVAAILG-STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DFRLPLVKSIN-VSGHK  277 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~~~~~Dsi~-~~~hK  277 (369)
                      +|+++.+ +||||.+-   .+++|+++|+++      ++++++|.+|..+...-..... .. .+...+-..++ -+..|
T Consensus       176 ~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~------~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  249 (405)
T 3k7y_A          176 SVILQISCYNPCSVNIEEKYFDEIIEIVLHK------KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK  249 (405)
T ss_dssp             EEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence            8888776 89999984   577899999999      9999999999875431000000 00 11111223333 45888


Q ss_pred             CCC-CCCCeEEEEE
Q 017569          278 YGL-VYAGVGWVVW  290 (369)
Q Consensus       278 ~l~-~p~g~g~l~~  290 (369)
                      .++ .+++.|++++
T Consensus       250 ~~~l~GlRiG~~~~  263 (405)
T 3k7y_A          250 NMSLYGERAGALHI  263 (405)
T ss_dssp             TSCCTTTTEEEEEE
T ss_pred             cCCCccccceEEEE
Confidence            875 7899999875

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.76  E-value=2.9e-17  Score=158.72  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHhhhhcC-CCCccccccccC-CChHHHHHHHHHHhcc-----CCCCCCCCcchHHHHHHHHHHHHHHhC-C
Q 017569           39 KEAAYQVINDELMLDG-NPRLNLASFVTT-WMEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFN-T  110 (369)
Q Consensus        39 ~~~i~~~l~~~~~~~~-~p~~~l~~~~~~-~~~~~v~~~~~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g-~  110 (369)
                      .+++.+.+......+. ...++|+...+. ++++.+.+++.++++.     ....|....+..++++++.+++.  .| +
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~~   93 (400)
T 3asa_A           16 FADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGFV   93 (400)
T ss_dssp             HHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTSS
T ss_pred             HHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCCC
Confidence            4556555555443333 333456555553 3457778887776643     12334334567777777444432  56 4


Q ss_pred             CCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce-eEEEeccCC-cc
Q 017569          111 PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLEEG-YY  188 (369)
Q Consensus       111 ~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~-v~~v~~~~~-~~  188 (369)
                      ++     ..+++|+|+++++..++..+ .             .+++|+++.++|..+...++..|+. ++.+|++++ .+
T Consensus        94 ~~-----~~v~~~~G~~~al~~~~~~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  154 (400)
T 3asa_A           94 DA-----KEIFISDGAKVDLFRLLSFF-G-------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF  154 (400)
T ss_dssp             CG-----GGEEEESCHHHHHHHHHHHH-C-------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT
T ss_pred             CH-----HHEEEccChHHHHHHHHHHc-C-------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc
Confidence            43     35899999999997754322 1             1468999999999999999999999 999998642 24


Q ss_pred             ccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-
Q 017569          189 VMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-  264 (369)
Q Consensus       189 ~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-  264 (369)
                      ..|+++    + +++++|+++.|+||||.+.|   +++|+++|+++      ++++++|++|+.+...   +.....+. 
T Consensus       155 ~~~l~~----~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~  220 (400)
T 3asa_A          155 FPEFPE----D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH------EILILFDAAYSTFISD---PSLPKSIFE  220 (400)
T ss_dssp             CCCCCT----T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGCCC---TTSCSSGGG
T ss_pred             ccChhh----c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhcC---CCCCCchhh
Confidence            444322    1 57889999999999999976   66789999999      9999999999865431   11111221 


Q ss_pred             CC---CCcEEEEcCccCCC-CCCCeEEEEEeC
Q 017569          265 LP---LVKSINVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       265 ~~---~~Dsi~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                      ..   ..+.+..+++|+++ .+.+.|++++++
T Consensus       221 ~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~  252 (400)
T 3asa_A          221 IPDARFCAIEINSFSKPLGFAGIRLGWTVIPQ  252 (400)
T ss_dssp             STTGGGTEEEEEECCGGGTTTTCCCEEEECCT
T ss_pred             CCCCCCceEEEecchhhcCCcchheeEEeeCh
Confidence            21   23466788999985 445689998754

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.75  E-value=7.2e-18  Score=160.09  Aligned_cols=223  Identities=13%  Similarity=0.030  Sum_probs=143.1

Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH-
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-  169 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~-  169 (369)
                      +...+++    +++++++|.+.       .++++||++|+.+++.++..+        |   ++++|+++.+.|++... 
T Consensus        47 ~~~~~l~----~~la~~~~~~~-------~i~~~~G~~a~~~al~~~~~~--------g---d~~~vi~~~~~~~~~~~~  104 (357)
T 3lws_A           47 AIIEPFE----QKFADVLGMDD-------AVFFPSGTMAQQVALRIWSDE--------T---DNRTVAYHPLCHLEIHEQ  104 (357)
T ss_dssp             TTHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHH--------H---TCCEEEECTTCHHHHSST
T ss_pred             hHHHHHH----HHHHHHhCCCc-------EEEecCcHHHHHHHHHHHhhc--------C---CCcEEEecccceeeeecc
Confidence            4555555    45888888864       577789999999998887664        1   11278888888876554 


Q ss_pred             --HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc-ccCC---CHHHHHHHHHHhhhccCCCceEEe
Q 017569          170 --FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFE---DVKLLHDLLTKKNEETGWDTPIHV  243 (369)
Q Consensus       170 --~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-G~~~---~l~~I~~l~~~~~~~~~~~~~l~v  243 (369)
                        .+...|+.++.+|.  +++.+|+++|+++.  ++++|+++.|+||+ |.+.   ++++|+++|+++      ++++|+
T Consensus       105 ~~~~~~~g~~~~~v~~--~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~------~~~li~  174 (357)
T 3lws_A          105 DGLKELHPIETILVGA--ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER------GIRLHL  174 (357)
T ss_dssp             THHHHHSSCEEEECSC--TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT------TCEEEE
T ss_pred             chhhhccCcEEEEecC--CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc------CCEEEE
Confidence              34555777777764  34789999999883  48999999999998 8875   499999999999      999999


Q ss_pred             ecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          244 DAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       244 D~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      |+||......+.... ...+ ...+|.++.++||++++|.| |+++. +++.. ..+.......+....      + ...
T Consensus       175 D~a~~~~~~~~~~~~-~~~~-~~~~d~~~~s~sK~~~~~~g-g~~~~-~~~~~-~~~~~~~~~~~~~~~------~-~~~  242 (357)
T 3lws_A          175 DGARLFEMLPYYEKT-AAEI-AGLFDSIYISFYKGLGGIAG-AILAG-PAAFC-QTARIWKRRYGGDLI------S-LYP  242 (357)
T ss_dssp             EETTHHHHHHHHTCC-HHHH-HTTSSEEEEESSSTTCCSSC-EEEEE-CHHHH-HHHHHHHHHTTCCCS------C-CHH
T ss_pred             ECchhhhhhhhcCCC-hHHH-HhcCCEEEEeccccCCCCce-EEEEc-CHHHH-HHHHHHHHHhcCCcc------c-chH
Confidence            999863222111111 1111 13578899999999988887 77765 33332 121110011111000      0 111


Q ss_pred             HHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          324 QIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      .+.....+++.+    .+.+ +..++++++++.|++.+-
T Consensus       243 ~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~~~g  277 (357)
T 3lws_A          243 YIVSADYYYELR----KDRMGQYYEQAKQLAEQFNALPG  277 (357)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCC
Confidence            122222333321    1223 567888999999998743

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.75  E-value=1.9e-17  Score=156.06  Aligned_cols=234  Identities=16%  Similarity=0.103  Sum_probs=161.6

Q ss_pred             CChHHHHHHHHHHhcc-CCCCCCCCcchHHHHHHHHHHHHHHhC---CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFN---TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (369)
                      ++++.+.+++.+++.. ....|. .++..+++++    ++++++   +++     ...++|+|+++++..++.++     
T Consensus        32 ~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~----la~~~~~~~~~~-----~~v~~~~G~~~al~~~~~~~-----   96 (335)
T 1uu1_A           32 PFPEDLVDEVFRRLNSDALRIYY-DSPDEELIEK----ILSYLDTDFLSK-----NNVSVGNGADEIIYVMMLMF-----   96 (335)
T ss_dssp             CCCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHH----HHHHHTCSSCCG-----GGEEEESSHHHHHHHHHHHS-----
T ss_pred             CCCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHH----HHHHcCCCCCCH-----HHEEEcCChHHHHHHHHHHh-----
Confidence            3467788888888732 222332 2345566655    666666   553     35899999999998888775     


Q ss_pred             HHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       143 ~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                                 +++|+++ ++|..+...++..|++++.+|++++ +.+|+++|     +++++|+++.|+||||.+.|.+
T Consensus        97 -----------gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~  158 (335)
T 1uu1_A           97 -----------DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVNV-----GEGDVVFIPNPNNPTGHVFERE  158 (335)
T ss_dssp             -----------SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTT-SCCCCCCC-----CTTEEEEEESSCTTTCCCCCHH
T ss_pred             -----------CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCC-CCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHH
Confidence                       1589999 9999999999999999999998754 78888877     5788999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL  300 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~  300 (369)
                      ++.++++..      + ++++|++|+.+..   .+  ... +.....+.+..+.+|+++ .+.+.|+++++ ++.. ..+
T Consensus       159 ~l~~l~~~~------~-~li~De~~~~~~~---~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l  224 (335)
T 1uu1_A          159 EIERILKTG------A-FVALDEAYYEFHG---ES--YVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFI-DAY  224 (335)
T ss_dssp             HHHHHHHTT------C-EEEEECTTHHHHC---CC--CGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHH-HHH
T ss_pred             HHHHHHHhC------C-EEEEECcchhhcc---hh--HHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC-HHHH-HHH
Confidence            999999999      9 9999999986432   11  011 122345677888999985 34568999884 3222 222


Q ss_pred             ccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       301 ~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ....       ..    ++.+   .+.++++...+.. +.++++  +..++.+++.+.|++.|+
T Consensus       225 ~~~~-------~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  274 (335)
T 1uu1_A          225 NRVR-------LP----FNVS---YVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGY  274 (335)
T ss_dssp             HHHS-------CT----TCSC---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhc-------CC----CCcC---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence            1100       01    1222   2333333333322 345555  788889999999988753

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.75  E-value=1.4e-17  Score=162.41  Aligned_cols=211  Identities=16%  Similarity=0.011  Sum_probs=146.8

Q ss_pred             CCccccccccCCCh----HHHHHHH--HHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           56 PRLNLASFVTTWME----PECDKLV--MASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        56 p~~~l~~~~~~~~~----~~v~~~~--~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      ..++|..+.|.+..    +.+.+++  .++++..   ...|....+..+++++    +++++++++     ..+++|+|+
T Consensus        34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~~~~~~-----~~i~~t~G~  104 (427)
T 3ppl_A           34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQI----WADLLGVPV-----EQVLAGDAS  104 (427)
T ss_dssp             CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHH----HHHHHTSCG-----GGEEECSSC
T ss_pred             ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHH----HHHHhCCCc-----ceEEEeCCc
Confidence            34666666654321    1244444  4444432   3444444577777776    566667765     358999999


Q ss_pred             hHHHH--HHHHHHHHHHHHHHHhcCCC-----CCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHH
Q 017569          127 SEAIM--LAGLAFKRKWQQKRKEQGKP-----YDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV  199 (369)
Q Consensus       127 t~a~~--~al~~~~~~~~~~~~~~g~~-----~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i  199 (369)
                      ++++.  +++.++.+..      +|.+     ..+++|+++.++|..+...++..|++++.+|++++ + +|+++|++++
T Consensus       105 ~~al~~~~~~~~l~~~~------~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l  176 (427)
T 3ppl_A          105 SLNIMFDVISWSYIFGN------NDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED-G-PDMDAVEELV  176 (427)
T ss_dssp             HHHHHHHHHHHHHHHCC------TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT-E-ECHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccC------CcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC-C-CCHHHHHHHH
Confidence            99994  6666664400      0000     01478999999999999999999999999999875 4 9999999999


Q ss_pred             h-hcCcEEEEe-eCCCCcccCCCHH---HHHHHH-HHhhhccCCCceEEeecccccccccccCCC-ccccc-------cC
Q 017569          200 D-ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWDF-------RL  265 (369)
Q Consensus       200 ~-~~~~~v~~~-~~~~~tG~~~~l~---~I~~l~-~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~-------~~  265 (369)
                      + +++++|+++ +++||||.+.+.+   +|+++| +++      ++++|+|++|+.+.+  .... ...++       ..
T Consensus       177 ~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~------~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~  248 (427)
T 3ppl_A          177 KNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP------DFRVVWDNAYAVHTL--TDEFPEVIDIVGLGEAAGN  248 (427)
T ss_dssp             TSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBS--SSCCCCCCCHHHHHHHTTC
T ss_pred             hcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC------CCEEEEECCCccccc--CCCCCCccchhhhhhccCC
Confidence            5 578888766 8899999997766   888888 899      999999999987443  1111 01111       12


Q ss_pred             CCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          266 PLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       266 ~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      .+.+.+..+++|+++.+.+.|+++..
T Consensus       249 ~~~~i~~~S~SK~~~~G~r~G~~~~~  274 (427)
T 3ppl_A          249 PNRFWAFTSTSKITLAGAGVSFFLTS  274 (427)
T ss_dssp             TTSEEEEEESTTTSCTTSSCEEEECC
T ss_pred             CCcEEEEechhhccCcCccEEEEEcC
Confidence            34567778899998778899988764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.75  E-value=3.7e-17  Score=156.07  Aligned_cols=252  Identities=13%  Similarity=0.018  Sum_probs=153.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +++.+.+++.+.++........++.  ....++++++++++|++      ..+++|+||++|+.+++.+++....  +  
T Consensus        45 ~~~~v~~a~~~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~------~~v~~~~g~t~a~~~~~~~~~~~~~--~--  112 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKLLHVSNLYEN--PWQEELAHKLVKHFWTE------GKVFFANSGTESVEAAIKLARKYWR--D--  112 (375)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCTTBCC--HHHHHHHHHHHHTSSSC------EEEEEESSHHHHHHHHHHHHHHHHH--H--
T ss_pred             CCHHHHHHHHHHHHhccccCcccCC--HHHHHHHHHHHhhcCCC------CeEEEeCchHHHHHHHHHHHHHHhc--c--
Confidence            4577888888777543111011221  12335566789989883      1389999999999999876432110  0  


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcceeE----EEeccCCccc----cCHHHHHHHHhhcCcEEEEeeCCCCcccCC
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELK----EVKLEEGYYV----MNPVKAVELVDENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~----~v~~~~~~~~----~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~  219 (369)
                       +.+ .+++|++++++|..+...+..++....    ..|++.+ ..    +|+++|++++++++++|+++.++||||.+.
T Consensus       113 -~~~-g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~  189 (375)
T 2eh6_A          113 -KGK-NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPG-FSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNE  189 (375)
T ss_dssp             -TTC-CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSS-EEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEE
T ss_pred             -CCC-CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCC-ceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcC
Confidence             001 126899998886554443333322110    0111111 11    589999999988899999999999999997


Q ss_pred             C----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccC--CCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL--PLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       220 ~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      |    +++|.++|+++      ++++|+|++|+++..  . +. .+.+..  ..+|.+++|  |+++++.++|+++++++
T Consensus       190 ~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~-~~-~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~  257 (375)
T 2eh6_A          190 ASEDFLSKLQEICKEK------DVLLIIDEVQTGIGR--T-GE-FYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREE  257 (375)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--T-SS-SSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHH
T ss_pred             CCHHHHHHHHHHHHHh------CCEEEEeccccCCCC--C-Cc-chhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHH
Confidence            7    99999999999      999999999995322  1 11 112221  137888777  77778889999998752


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                       .. +.+.. ..+ +   ..+   ++ +......+..+|+.+.    ... +..++++++++.|++.+.
T Consensus       258 -~~-~~~~~-~~~-~---~~~---~~-~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~~~~  311 (375)
T 2eh6_A          258 -VA-QSFTP-GSH-G---STF---GG-NPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKELGK  311 (375)
T ss_dssp             -HH-TTCCT-TSC-C---CSS---TT-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -HH-hhhcC-CCC-C---CCC---CC-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence             21 22111 000 0   011   12 1222222233444432    333 888899999999998764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.75  E-value=9.5e-18  Score=159.28  Aligned_cols=243  Identities=15%  Similarity=0.061  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+.+..+.  +...+...    ++++++++++|.+.       .++++||++|+.+++.++..+        
T Consensus        28 ~p~v~~ai~~~~~~~~--~~~~~~~~----~l~~~la~~~~~~~-------~i~~~~g~~a~~~a~~~~~~~--------   86 (359)
T 3pj0_A           28 LTEALQNIDDNLESDI--YGNGAVIE----DFETKIAKILGKQS-------AVFFPSGTMAQQIALRIWADR--------   86 (359)
T ss_dssp             HHHHTTTSCTTCBCCB--TTBSHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHhhcccCc--ccCCHHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHHhc--------
Confidence            4556665555433222  22233444    45556889999874       477799999999999887664        


Q ss_pred             CCCCCCCeEEecCCCcchHHHH---HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc-ccCCCHH--
Q 017569          149 GKPYDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFEDVK--  222 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~---~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-G~~~~l~--  222 (369)
                      |   +...|+++.+.|+.....   +...|+.++.+|.+  ++.+|+++|+++ .+++++|+++.|+||+ |.+.|.+  
T Consensus        87 g---~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l  160 (359)
T 3pj0_A           87 K---ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEEL  160 (359)
T ss_dssp             H---TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHH
T ss_pred             C---CCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHH
Confidence            1   012477777777665432   24568888888763  479999999998 7789999999999888 6876654  


Q ss_pred             -HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          223 -LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       223 -~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                       +|+++|+++      ++++|+|++|..+...+.... ...+ ..++|.+++++||++++|.| |+++. +++.. +.+.
T Consensus       161 ~~l~~~~~~~------~~~li~D~a~~~~~~~~~~~~-~~~~-~~~~d~~~~s~sK~~~~~~g-g~~~~-~~~l~-~~~~  229 (359)
T 3pj0_A          161 EKISEYCHEQ------GISLHLDGARLWEITPFYQKS-AEEI-CALFDSVYVSFYKGIGGIAG-AILAG-NDDFV-QEAK  229 (359)
T ss_dssp             HHHHHHHHHH------TCEEEEEETTCGGGHHHHTCC-HHHH-HTTCSEEEEESSSTTCCSSC-EEEEE-CHHHH-HHHH
T ss_pred             HHHHHHHHHc------CCEEEEECcchhcchhhhCCC-HHHh-hccCCEEEEeccccCCCcce-EEEEC-CHHHH-HHHH
Confidence             559999999      999999999865432211111 1112 14679999999999888866 66654 33332 2211


Q ss_pred             cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       302 ~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                      ......+...      .+ ....+.+...++...    ...+ +..++++++++.|++.+
T Consensus       230 ~~~~~~~~~~------~~-~~~~~~a~~~~l~~~----~~~~~~~~~~~~~l~~~L~~~~  278 (359)
T 3pj0_A          230 IWKRRYGGDL------IS-LYPYILSADYYFEKR----IGKMAEYFEAAKGLAERFNSCS  278 (359)
T ss_dssp             HHHHHTTCCC------SC-CHHHHHHHHHHHHHH----GGGHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHhCCCc------ch-hHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhhCC
Confidence            1001111100      00 111122222333322    2334 77888999999999874

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.75  E-value=2.2e-17  Score=156.45  Aligned_cols=248  Identities=14%  Similarity=-0.013  Sum_probs=163.8

Q ss_pred             CCCccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH
Q 017569           55 NPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA  133 (369)
Q Consensus        55 ~p~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a  133 (369)
                      +..++|+...+. ++++.+.+++.+.+... ..|....+ .    ++++++++++|+++     ...++|+|+++|+.++
T Consensus        15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~-~----~lr~~la~~~~~~~-----~~i~~t~g~~~al~~~   83 (350)
T 3fkd_A           15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCI-RHYPEPDA-G----TLRQMLAKRNSVDN-----NAILVTNGPTAAFYQI   83 (350)
T ss_dssp             -CCEECSCCSCCCSCCHHHHHHHHHTGGGG-GSCCCTTC-H----HHHHHHHHHTTCCG-----GGEEEESHHHHHHHHH
T ss_pred             ccEEEccCCCCCCCCCHHHHHHHHHhHhHH-hcCCCCcH-H----HHHHHHHHHhCcCH-----HHEEEcCCHHHHHHHH
Confidence            344455444333 34577888888877332 22222222 3    45556888889875     3589999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec-cCCccccCHHHHHHHHhhcCcEEEEeeCC
Q 017569          134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDENTICVAAILGS  212 (369)
Q Consensus       134 l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~L~~~i~~~~~~v~~~~~~  212 (369)
                      +.++.               +++|+++.++|..+...++..|++++.+|+ +++ ..+++        +++++|++++|+
T Consensus        84 ~~~l~---------------gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--------~~~~~v~i~~p~  139 (350)
T 3fkd_A           84 AQAFR---------------GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI-GEADF--------SNMDFCWLCNPN  139 (350)
T ss_dssp             HHHTT---------------TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG-GGSCC--------TTCSEEEEESSC
T ss_pred             HHHHC---------------CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc-ccCcc--------CCCCEEEEeCCC
Confidence            88763               368999999999999999999999999999 652 34444        678999999999


Q ss_pred             CCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEe
Q 017569          213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR  291 (369)
Q Consensus       213 ~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~  291 (369)
                      ||||.+.|+++|.++++.+.     ..++++|++|+.+...  .+.....+.....+.+..+++|+++ .+.+.|+++. 
T Consensus       140 nptG~~~~~~~l~~l~~~~~-----~~~li~Dea~~~~~~~--~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~-  211 (350)
T 3fkd_A          140 NPDGRLLQRTEILRLLNDHP-----DTTFVLDQSYVSFTTE--EVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA-  211 (350)
T ss_dssp             TTTCCCCCHHHHHHHHHHCT-----TSEEEEECTTTTSCSS--CCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEEC-
T ss_pred             CCcCCCCCHHHHHHHHHhCC-----CCEEEEECchhhhccC--cchhhHHhhcCCCEEEEecCchhccCcchheEeEEe-
Confidence            99999999999999999882     2699999999864431  1111122223345577778999986 5577899887 


Q ss_pred             CCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhh-H-HHH-HhhHHHHHHHHHHHhcC
Q 017569          292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEV-I-PSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       292 ~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G-~-~~~-~~~~~a~~l~~~L~~~g  360 (369)
                      +++.. +.+....       ..    ++-   ..+.++++...+...+ + +.+ +..++.+++.+.|++.+
T Consensus       212 ~~~~~-~~~~~~~-------~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  268 (350)
T 3fkd_A          212 NKDFM-KRVAAFS-------TP----WAV---NALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLD  268 (350)
T ss_dssp             CHHHH-HHHHTTC-------CT----TCS---CHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHH-HHHHHhC-------CC----CCC---CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33222 2211100       01    111   2344444444443222 2 222 44588899999998873

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.74  E-value=1.1e-16  Score=154.38  Aligned_cols=247  Identities=11%  Similarity=-0.070  Sum_probs=159.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .++.+.+++.++++........+  ......++++.+++++|.+       .+++|+||++|+..++.+++.....    
T Consensus        57 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~gg~~a~~~al~~~~~~~~~----  123 (397)
T 2ord_A           57 SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGG-------KVFFANTGTEANEAAIKIARKYGKK----  123 (397)
T ss_dssp             TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSC-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence            35778888888775532211112  2345567777899998854       3899999999999999887642110    


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                       |.+ .+++|++++++ |.++..+++..|..            ++.+|.+      |+++|++++++++++|+++.++||
T Consensus       124 -~~~-~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~------d~~~l~~~l~~~~~~v~~~~~~np  195 (397)
T 2ord_A          124 -KSE-KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN------NVEDLRRKMSEDVCAVFLEPIQGE  195 (397)
T ss_dssp             -HCT-TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT------CHHHHHHHCCTTEEEEEECSEECT
T ss_pred             -CCC-CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC------CHHHHHHHhhcCeEEEEEecccCC
Confidence             000 13467766655 45556567777765            5556542      799999999988999999999999


Q ss_pred             ccc----CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       215 tG~----~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      ||.    .+++++|.++|+++      ++++++|++|+++..  ....... .+. ...|.+++  +|+++++.+.|+++
T Consensus       196 tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~-~~~d~~s~--sK~~~~G~r~G~~~  264 (397)
T 2ord_A          196 SGIVPATKEFLEEARKLCDEY------DALLVFDEVQCGMGR--TGKLFAYQKYG-VVPDVLTT--AKGLGGGVPIGAVI  264 (397)
T ss_dssp             TTCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHT-CCCSEEEE--CGGGGTTSCCEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CccchhhhhhC-CCCCeeee--ccccCCCcCeEEEE
Confidence            999    37899999999999      999999999985322  1111111 111 13677754  69988778899999


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      ++++ ..  .+..  .   .....    .+.+.....++..+|+.+..+.+.+ +..++++++.+.|++.
T Consensus       265 ~~~~-~~--~l~~--~---~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~l~~~L~~~  321 (397)
T 2ord_A          265 VNER-AN--VLEP--G---DHGTT----FGGNPLACRAGVTVIKELTKEGFLE-EVEEKGNYLMKKLQEM  321 (397)
T ss_dssp             ECST-TC--CCCT--T---SSCCS----STTCHHHHHHHHHHHHHHTSTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             EchH-hc--ccCC--C---CcCCC----CCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHH
Confidence            8654 22  2211  0   00011    1222333444555666654432221 7788888999988775

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.74  E-value=4.5e-17  Score=157.71  Aligned_cols=278  Identities=14%  Similarity=0.030  Sum_probs=169.5

Q ss_pred             CCcccccccc-CC-ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe--EEeCCchHHHH
Q 017569           56 PRLNLASFVT-TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG--VGTVGSSEAIM  131 (369)
Q Consensus        56 p~~~l~~~~~-~~-~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~t~Ggt~a~~  131 (369)
                      ..++|+.+.+ .. .++.+.+.+.++.......|....+..++++++.+|+   .|.+.........  ..|.||++|+.
T Consensus        42 ~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~  118 (409)
T 4eu1_A           42 RKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALR  118 (409)
T ss_dssp             SCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHH
T ss_pred             CceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHH
Confidence            3367776665 32 2344566666664444455555667888988877766   3544100000123  45899999997


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhh---cCcEEE
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDE---NTICVA  207 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~---~~~~v~  207 (369)
                      .+...++.-          ...+++|+++.++|..+...++..|++++.+|++ ++++.+|+++|++++++   ++++++
T Consensus       119 ~~~~~~~~~----------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~  188 (409)
T 4eu1_A          119 IGGDLLNRF----------VANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILV  188 (409)
T ss_dssp             HHHHHGGGT----------SSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHh----------cCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEE
Confidence            765543321          1124799999999999999999999999999984 44589999999999973   456677


Q ss_pred             EeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCcc-ccccCCCCcEE-EEcCccCCC-
Q 017569          208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLE-WDFRLPLVKSI-NVSGHKYGL-  280 (369)
Q Consensus       208 ~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~-~~~~~~~~Dsi-~~~~hK~l~-  280 (369)
                      ++.|+||||.+.+   +++|+++|+++      ++++++|++|+.+...-.. +... ..+.....+.+ ..+..|.++ 
T Consensus       189 ~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  262 (409)
T 4eu1_A          189 HACAHNPTGVDPTHDDWRQVCDVIKRR------NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGL  262 (409)
T ss_dssp             ESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSC
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccC
Confidence            7999999999866   56699999999      9999999999875531000 0000 01111123333 446779875 


Q ss_pred             CCCCeEEE--EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc--------HhhHHHH--HhhHH
Q 017569          281 VYAGVGWV--VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEVIPSF--CCVDH  348 (369)
Q Consensus       281 ~p~g~g~l--~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg--------~~G~~~~--~~~~~  348 (369)
                      .+.+.|++  ++.+++.. +.+........   ...+  .+.   ..+.++++...+.        .+.+.++  +..++
T Consensus       263 ~G~riG~~~~v~~~~~~~-~~l~~~~~~~~---~~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (409)
T 4eu1_A          263 YGHRCGALHISTASAEEA-KRLVSQLALLI---RPMY--NNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEV  333 (409)
T ss_dssp             GGGCCEEEEEECSSHHHH-HHHHHHHHHHH---HHHH--SSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEeCCHHHH-HHHHHHHHHHH---hhhc--CCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45678887  55544311 00100000000   0000  011   1233333333332        2334444  78888


Q ss_pred             HHHHHHHHHhcCC
Q 017569          349 KKLSSFFVIHSSY  361 (369)
Q Consensus       349 a~~l~~~L~~~g~  361 (369)
                      .+++.+.|++.|.
T Consensus       334 ~~~l~~~L~~~g~  346 (409)
T 4eu1_A          334 RKRLVSELKACGS  346 (409)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999998863

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.73  E-value=1.7e-17  Score=160.33  Aligned_cols=210  Identities=17%  Similarity=0.024  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhh
Q 017569           98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY  173 (369)
Q Consensus        98 ~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~  173 (369)
                      .++++.+++++|.+.       .+++++|++|+.+++. +..+             +++|+++.+.|.+...    .++.
T Consensus        58 ~~lr~~la~~~g~~~-------~i~~~sGt~a~~~al~-~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~~  116 (393)
T 1n8p_A           58 ENLERAVAALENAQY-------GLAFSSGSATTATILQ-SLPQ-------------GSHAVSIGDVYGGTHRYFTKVANA  116 (393)
T ss_dssp             HHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHH-TSCS-------------SCEEEEESSCCHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhCCCc-------EEEECChHHHHHHHHH-HcCC-------------CCEEEEeCCCchHHHHHHHHHHHH
Confidence            355666899998863       6777777999999888 5321             4689999999885443    4567


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (369)
                      .|++++.+|++      | ++|+++++++|++|++++++||+|.+.|+++|+++|++++.  ..++++|+|++|+.+.. 
T Consensus       117 ~G~~v~~v~~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~--~~~~~livD~a~~~~~~-  186 (393)
T 1n8p_A          117 HGVETSFTNDL------L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDNTFLSPYI-  186 (393)
T ss_dssp             TCSCCEEESSH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEECTTTHHHH-
T ss_pred             cCcEEEEeCCC------h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCC--CCCCEEEEeCCcccccc-
Confidence            79999998865      7 89999999899999999999999999999999999999821  11699999999987654 


Q ss_pred             ccCCCccccccCCCCcEEEEcCccCCCCCCC--e-EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--V-GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       254 ~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~-g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                       ..   ...   .++|.++.++||+++ |.|  . |+++.++++.. ..+.......          |++..  ....|.
T Consensus       187 -~~---~~~---~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~-~~l~~~~~~~----------g~~~~--~~~~~~  245 (393)
T 1n8p_A          187 -SN---PLN---FGADIVVHSATKYIN-GHSDVVLGVLATNNKPLY-ERLQFLQNAI----------GAIPS--PFDAWL  245 (393)
T ss_dssp             -CC---GGG---GTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCCCC--HHHHHH
T ss_pred             -CC---HHH---cCCeEEEEECccccc-CCCCceeEEEEeCCHHHH-HHHHHHHHhc----------CCCCC--HHHHHH
Confidence             11   112   268999999999985 444  5 88877543332 1211100001          11111  334444


Q ss_pred             HHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          331 QFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       331 ~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .+..+.  .+...  +..++++++++.|++.+.
T Consensus       246 ~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~~~  276 (393)
T 1n8p_A          246 THRGLK--TLHLRVRQAALSANKIAEFLAADKE  276 (393)
T ss_dssp             HHHHHT--THHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHhccc--hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            444442  23333  677888999999988765

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.73  E-value=1e-16  Score=157.75  Aligned_cols=199  Identities=13%  Similarity=0.087  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      +.+.+++.+++..+...|...++..++++    ++++++|.+.       +++|+||++|+..++.+++++....   .|
T Consensus        53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l~~----~la~~~~~~~-------v~~t~~gt~A~~~al~~~~~~~~~~---~G  118 (467)
T 2oqx_A           53 GAVTQSMQAAMMRGDEAYSGSRSYYALAE----SVKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQE---KG  118 (467)
T ss_dssp             SCCCHHHHHHTTSCCCCSSSCHHHHHHHH----HHHHHHCCSE-------EEEEC--CCSHHHHHHHHHHHHHHH---HC
T ss_pred             HHHHHHHHHHhccCcceeccCchhHHHHH----HHHHHhCcCc-------EEEcCCcHHHHHHHHHHHhcccccc---CC
Confidence            55677777777554334545555555555    4788888753       8999999999999999987641100   12


Q ss_pred             CCCCCCeEEecCCCcch-HHHHHhhhcceeEEE------ecc---CCccccCHHHHHHHHhh----cCcEEEEeeCCCCc
Q 017569          150 KPYDKPNIVTGANVQVC-WEKFARYFEVELKEV------KLE---EGYYVMNPVKAVELVDE----NTICVAAILGSTLT  215 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s-~~~~~~~~G~~v~~v------~~~---~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~t  215 (369)
                      .+ .+++|+++ ..|+. +.......|..+...      +.+   +.++.+|+++|+++|++    ++++|+++.++|++
T Consensus       119 ~~-~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~  196 (467)
T 2oqx_A          119 LD-RSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSA  196 (467)
T ss_dssp             CC-TTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGG
T ss_pred             CC-ccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCC
Confidence            11 00457766 56644 333444455554432      222   12468999999999984    78999999999998


Q ss_pred             -ccC---CCHHHHHHHHHHhhhccCCCceEEeeccccc-ccc-------cccCCCcccccc---CCCCcEEEEcCccCCC
Q 017569          216 -GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKYGL  280 (369)
Q Consensus       216 -G~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~Dsi~~~~hK~l~  280 (369)
                       |.+   +++++|+++|+++      |+|+|+|++++. ...       .+ .......+.   ...+|++++++||+++
T Consensus       197 gG~~~~~~~l~~i~~la~~~------gi~li~D~a~~~e~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~s~sK~~g  269 (467)
T 2oqx_A          197 GGQPVSLANLKAMYSIAKKY------DIPVVMDSARFAENAYFIKQREAEY-KDWTIEQITRETYKYADMLAMSAKKDAM  269 (467)
T ss_dssp             GCBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHCGGG-TTSCHHHHHHHHGGGCSEEEEESSSTTC
T ss_pred             CCccCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhhhhcccccccc-cCccHHHHhhhhhccCCeEEEecccccC
Confidence             665   5689999999999      999999987654 221       00 111011111   1347888999999997


Q ss_pred             CCCCeEEEEEeC
Q 017569          281 VYAGVGWVVWRT  292 (369)
Q Consensus       281 ~p~g~g~l~~~~  292 (369)
                      .|.| |+++.++
T Consensus       270 ~~~G-g~~~~~~  280 (467)
T 2oqx_A          270 VPMG-GLLCMKD  280 (467)
T ss_dssp             CSSC-EEEEECS
T ss_pred             CCCc-eEEEecC
Confidence            7755 6666554

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.72  E-value=2.8e-16  Score=151.57  Aligned_cols=248  Identities=12%  Similarity=-0.049  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+++.........+  ......++++++++++|.+.       +++|+||++|+..++.+++..+..+    
T Consensus        57 ~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-------v~~~~gg~~a~~~al~~~~~~~~~~----  123 (406)
T 4adb_A           57 HPELREALNEQASKFWHTGNGY--TNEPVLRLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKFAHDR----  123 (406)
T ss_dssp             CHHHHHHHHHHHTTCSCCCTTS--CCHHHHHHHHHHHHHSSCSE-------EEEESSHHHHHHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhcccccCCc--CCHHHHHHHHHHHhhCCCCe-------EEEeCcHHHHHHHHHHHHHHHHHhc----
Confidence            5778888888876543322222  22345677788999998763       8999999999999999876532211    


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcc-------------eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                      |.+ .+++|++++++|..+...+..++.             ++..+|.      .|+++|++++++++++|+++ |+||+
T Consensus       124 ~~~-g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~-p~np~  195 (406)
T 4adb_A          124 YGS-HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------NDINSASALIDDSTCAVIVE-PIQGE  195 (406)
T ss_dssp             TCT-TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------TCHHHHHTTCSTTEEEEEEC-SEETT
T ss_pred             CCC-CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------CcHHHHHHHhcCCeEEEEEe-CCcCC
Confidence            111 136788877776654333333332             2333332      37999999999889999888 99999


Q ss_pred             ccC-----CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          216 GEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       216 G~~-----~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      |.+     +++++|.++|+++      ++++|+|++|+++..  .......+..-...|.+++  +|+++++.+.|+++.
T Consensus       196 g~~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~~  265 (406)
T 4adb_A          196 GGVVPASNAFLQGLRELCNRH------NALLIFDEVQTGVGR--TGELYAYMHYGVTPDLLTT--AKALGGGFPVGALLA  265 (406)
T ss_dssp             TTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEEE
Confidence            965     4799999999999      999999999975322  1111111111224677765  899876667899887


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +++ .. +.+..   . ..   ..+  .+-+.....++..+++.+..+.+.+ +..++++++++.|++.
T Consensus       266 ~~~-~~-~~~~~---~-~~---~~~--~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          266 TEE-CA-RVMTV---G-TH---GTT--YGGNPLASAVAGKVLELINTPEMLN-GVKQRHDWFVERLNTI  322 (406)
T ss_dssp             CHH-HH-HTCCT---T-SS---CCS--STTCHHHHHHHHHHHHHHSSHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             cHH-HH-hhhcc---C-Cc---CCC--CCCCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence            532 21 11110   0 00   001  1222223344445555554322221 7788888898888775

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.70  E-value=2.5e-16  Score=153.32  Aligned_cols=213  Identities=15%  Similarity=0.036  Sum_probs=141.4

Q ss_pred             CccccccccC----CChHHHHHHHHHHh-c-c--CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           57 RLNLASFVTT----WMEPECDKLVMASI-N-K--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        57 ~~~l~~~~~~----~~~~~v~~~~~~~~-~-~--n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .++|+.+.+.    +.++.+.+++.+.+ . .  ....|....+..+++++    +++++|+++     ..+++|+|+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~-----~~i~~t~G~~~  104 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIREL----WAEALGLPA-----DLVVAQDGSSL  104 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHH----HHHHHTCCG-----GGEEECSSCHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hHEEEecchHH
Confidence            4566666664    22334555554432 1 1  13345444567777777    555567765     34899999999


Q ss_pred             HH--HHHHHHHHHHHHHHHHhcCCCC----CCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-
Q 017569          129 AI--MLAGLAFKRKWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-  201 (369)
Q Consensus       129 a~--~~al~~~~~~~~~~~~~~g~~~----~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-  201 (369)
                      ++  .+++.++...+     ..|...    ++++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ 
T Consensus       105 al~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~  177 (422)
T 3d6k_A          105 NIMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-G-PDMGVVRELVKDP  177 (422)
T ss_dssp             HHHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHTST
T ss_pred             HHHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-C-CCHHHHHHHHhcC
Confidence            97  34444443200     001000    1247999999999999999999999999999874 4 999999999986 


Q ss_pred             cCcEEE-EeeCCCCcccCCCHH---HHHHHHH-HhhhccCCCceEEeecccccccccccCCCc-cc-c----ccCCCCcE
Q 017569          202 NTICVA-AILGSTLTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-D----FRLPLVKS  270 (369)
Q Consensus       202 ~~~~v~-~~~~~~~tG~~~~l~---~I~~l~~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~----~~~~~~Ds  270 (369)
                      ++++|+ +++++||||.+.+.+   +|+++|+ ++      ++++|+|++|+...+..-.+.. .. +    ......+.
T Consensus       178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  251 (422)
T 3d6k_A          178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP------DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFW  251 (422)
T ss_dssp             TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEE
T ss_pred             CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc------CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEE
Confidence            678877 688999999997766   7777777 88      9999999999741110000000 11 1    11234566


Q ss_pred             EEEcCccCCCCCCCeEEEEEe
Q 017569          271 INVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~  291 (369)
                      +..+++|+++.+.+.|+++++
T Consensus       252 ~~~S~SK~~~~GlriG~~~~~  272 (422)
T 3d6k_A          252 FMSSTSKITHAGSGVSFFASS  272 (422)
T ss_dssp             EEEESTTTSCTTSSCEEEECC
T ss_pred             EEcChhhhcCcccceEEEEeC
Confidence            777899996656779999874

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.69  E-value=3e-15  Score=145.89  Aligned_cols=262  Identities=11%  Similarity=-0.045  Sum_probs=155.5

Q ss_pred             ChHHHHHHHHHHhccCCCCC-CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .+|.+.+++.++++...... ..++  .....++++.++++++.+.     ..+++|+||++|+..++.+++.... .  
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-----~~v~~~~ggtea~~~ai~~~~~~~~-~--  129 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFGGIT--HAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQ-A--  129 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCSSEE--CHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHH-H--
T ss_pred             CCHHHHHHHHHHHHhcccccccccC--CHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHhc-c--
Confidence            35778888888876533211 1122  2334456677999998654     3489999999999999987653211 0  


Q ss_pred             hcCCCCCCCeEEecCCCcch-HHHHHhhhc-------------ceeEEEeccC-----CccccCHHHHHHHHhh---cCc
Q 017569          147 EQGKPYDKPNIVTGANVQVC-WEKFARYFE-------------VELKEVKLEE-----GYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s-~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~L~~~i~~---~~~  204 (369)
                       .|.  .+++|++++++|.. ...++...|             .+++.++++.     +...+|+++|++++++   +++
T Consensus       130 -~g~--~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  206 (429)
T 1s0a_A          130 -KGE--ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA  206 (429)
T ss_dssp             -HTC--CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred             -cCC--CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEE
Confidence             111  13578888876543 332332211             1456676642     1136899999999974   455


Q ss_pred             EEEEeeC-CCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          205 CVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      +|+++.. +|++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++  |++
T Consensus       207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~l  276 (429)
T 1s0a_A          207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCLG--KAL  276 (429)
T ss_dssp             EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred             EEEEeecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCcc--cchHHHhhhcCCCCCEEEec--ccc
Confidence            6655555 689998766    99999999999      999999999986422  11111112111246777765  877


Q ss_pred             CCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          280 LVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       280 ~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +++ .+.|+++.++ +.. +.+... . ........+  .+-+.....++.++++.+..+++.+ +..++.++++++|++
T Consensus       277 ~~G~~~iG~~~~~~-~~~-~~l~~~-~-~~~~~~~~t--~~~n~~~~~a~~aal~~~~~~~~~~-~~~~~~~~l~~~L~~  349 (429)
T 1s0a_A          277 TGGTMTLSATLTTR-EVA-ETISNG-E-AGCFMHGPT--FMGNPLACAAANASLAILESGDWQQ-QVADIEVQLREQLAP  349 (429)
T ss_dssp             GTSSSCCEEEEECH-HHH-HHHHTS-T-TSSCSCCCT--TTTCHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHGG
T ss_pred             cCCCccceEEEeCH-HHH-HHhhcC-C-CcccccCCC--CCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHH
Confidence            777 7899998754 222 222110 0 000000011  1122223344445666554443322 777788999999987


Q ss_pred             c
Q 017569          359 S  359 (369)
Q Consensus       359 ~  359 (369)
                      +
T Consensus       350 l  350 (429)
T 1s0a_A          350 A  350 (429)
T ss_dssp             G
T ss_pred             H
Confidence            6

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.68  E-value=2.6e-15  Score=144.52  Aligned_cols=194  Identities=15%  Similarity=-0.012  Sum_probs=132.6

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++...+.+..  .......++++++++++|.+       ..++|+||++|+..++.+++..+..    
T Consensus        53 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~----  119 (395)
T 3nx3_A           53 NHAKFNAKIKAQVDKLLHTSNL--YYNENIAAAAKNLAKASALE-------RVFFTNSGTESIEGAMKTARKYAFN----  119 (395)
T ss_dssp             SCHHHHHHHHHHHTTCSCCCTT--SBCHHHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence            3578888888888654433322  23455667888899998843       3899999999999999988764321    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhh-------------cceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYF-------------EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~-------------G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      .|  ..+++|++++++|..+...+..+             +.++..+|.+      |+++|++++++++++|++..++++
T Consensus       120 ~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~l~~~~~~v~~~~~~~~  191 (395)
T 3nx3_A          120 KG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN------DISSVEKLVNEKTCAIILESVQGE  191 (395)
T ss_dssp             TT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT------CHHHHHTTCCTTEEEEEEESEECT
T ss_pred             cC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC------CHHHHHHhccCCeEEEEEeCccCC
Confidence            12  12467888777765432222221             2334444432      799999999888889998888899


Q ss_pred             cccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       215 tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      +|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++  |.++++.+.|+++.
T Consensus       192 ~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~  261 (395)
T 3nx3_A          192 GGINPANKDFYKALRKLCDEK------DILLIADEIQCGMGR--SGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVI  261 (395)
T ss_dssp             TSCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--CCcchhHHhcCCCCCEEEec--ccccCCCceEEEEE
Confidence            999877    99999999999      999999999986422  11111111111246777765  77666788999987


Q ss_pred             eC
Q 017569          291 RT  292 (369)
Q Consensus       291 ~~  292 (369)
                      ++
T Consensus       262 ~~  263 (395)
T 3nx3_A          262 NQ  263 (395)
T ss_dssp             CH
T ss_pred             ch
Confidence            54

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.68  E-value=2e-15  Score=146.98  Aligned_cols=250  Identities=11%  Similarity=-0.104  Sum_probs=157.9

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++........  ...+...++++++++++|.+       .+++|+||++|+..++.+++..+.. +  
T Consensus        74 ~~p~v~~ai~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~-------~v~~~~ggteA~~~al~~~~~~~~~-~--  141 (420)
T 2pb2_A           74 CHPALVEALKSQGETLWHTSNV--FTNEPALRLGRKLIDATFAE-------RVLFMNSGTEANETAFKLARHYACV-R--  141 (420)
T ss_dssp             TCHHHHHHHHHHHTTCCCCCTT--SCCHHHHHHHHHHHHHSSCS-------EEEEESSHHHHHHHHHHHHHHHHHH-H--
T ss_pred             CCHHHHHHHHHHHHhcccccCc--cCCHHHHHHHHHHHhhCCCC-------eEEEeCCHHHHHHHHHHHHHHHhhh-c--
Confidence            4578888888888653321111  23355667778899998854       3899999999999999988763321 1  


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          148 QGKPYDKPNIVTGANVQV-CWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~-s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                       |.+ .+++|++++++|. ....++...|..            +..+|.      .|+++|++++++++++|+++.++++
T Consensus       142 -~~~-g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~le~~i~~~~~~vi~~p~~~~  213 (420)
T 2pb2_A          142 -HSP-FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAVKAVMDDHTCAVVVEPIQGE  213 (420)
T ss_dssp             -TCT-TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHHHHHCCTTEEEEEECSEETT
T ss_pred             -cCC-CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHHHHHhccCceEEEEeCCcCC
Confidence             111 1347887776654 444445555543            444443      2799999999988999998888887


Q ss_pred             ccc----CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       215 tG~----~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      +|.    .+++++|.++|+++      ++++|+|++|.++..  ......++..-...|.+++  +|+++++.+.|++++
T Consensus       214 gG~~~~~~~~l~~l~~l~~~~------gi~lI~Dev~~g~~~--~g~~~~~~~~~~~~diit~--sK~l~~G~~iG~~~~  283 (420)
T 2pb2_A          214 GGVQAATPEFLKGLRDLCDEH------QALLVFDEVQCGMGR--TGDLFAYMHYGVTPDILTS--AKALGGGFPVSAMLT  283 (420)
T ss_dssp             TTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEE
T ss_pred             CCeecCCHHHHHHHHHHHHHc------CCEEEEEcCCcCccc--CCcHHHHHhcCCCCCeEEe--cccccCCCceEEEEE
Confidence            776    36799999999999      999999999975322  1111111111124687764  699887778999998


Q ss_pred             eCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +++ .. +.+..      .. ...+.  +-+.....++.++|+.+..+.+.+ +..++.+++++.|++.
T Consensus       284 ~~~-l~-~~l~~------~~-~~~t~--~~~~~~~aa~~a~L~~~~~~~~~~-~~~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          284 TQE-IA-SAFHV------GS-HGSTY--GGNPLACAVAGAAFDIINTPEVLQ-GIHTKRQQFVQHLQAI  340 (420)
T ss_dssp             CHH-HH-TTCC-----------CCEE--CCCHHHHHHHHHHHHHHSSHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHH-HH-HhhcC------CC-cCccc--CcCHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH
Confidence            653 21 22111      00 01111  222233445556666665433222 7788888999988765

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.68  E-value=2.5e-15  Score=144.20  Aligned_cols=265  Identities=12%  Similarity=0.034  Sum_probs=164.4

Q ss_pred             CChHHHHHHHHHHhccCC--CCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe--EEeCCchHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY--VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG--VGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~--~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~t~Ggt~a~~~al~~~  137 (369)
                      ..++.|.+++.+.+.+-.  ++|     .......++|.-+.+...++||+++.    .|+  +=..+|+.||+.++.++
T Consensus        65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~VNVQP~SGs~AN~avy~Al  140 (490)
T 3ou5_A           65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTAL  140 (490)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCCCCCcCCHHHHHHHHHHHH
Confidence            345778888877664321  111     11224678999999999999999973    232  33458999999999998


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCC---CcchHH-----HHHhhhcc--eeEEEeccCCccccCHHHHHHHHhh-cCcEE
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGAN---VQVCWE-----KFARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~---~h~s~~-----~~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (369)
                      .++             +++|+..+.   .|.+.-     ......|.  ++...+++++++.+|.+++++...+ +|++|
T Consensus       141 l~P-------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklI  207 (490)
T 3ou5_A          141 LQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  207 (490)
T ss_dssp             CC--------------CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEE
T ss_pred             cCC-------------CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeE
Confidence            764             467776544   343322     11222333  2444456766799999999998765 78887


Q ss_pred             EEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       207 ~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      ++-  .+..-..-|++++.++|++.      |.++++|.|+-.+.+  ....++..  ++.+|.+|.++||.|.+|.| |
T Consensus       208 i~G--~SaY~r~id~~~~reIAd~v------GA~Lm~DmAHiaGLV--A~g~~psP--~~~ADvVTtTTHKTLrGPrG-G  274 (490)
T 3ou5_A          208 IAG--TSAYARLIDYARMREVCDEV------KAHLLADMAHISGLV--AAKVIPSP--FKHADIVTTTTHKTLRGARS-G  274 (490)
T ss_dssp             EEC--CSSCCSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSSTTCSCSC-E
T ss_pred             EEC--CccCccccCHHHHHHHHhhc------ccEEEechhhhhhhh--cccccCCc--cccceEEeccccccccCCCc-e
Confidence            743  33334566999999999999      999999999765554  11112222  34699999999999999987 7


Q ss_pred             EEEEeCCCCccc-cccccc--CccCCCC--CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          287 WVVWRTKDDLPD-ELVFHI--NYLGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       287 ~l~~~~~~~~~~-~~~~~~--~y~~~~~--~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++++++...... ......  .+....+  --+.++|..-...+++...+++.-....+.+.  +..+||+.|++.|.+.
T Consensus       275 ~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~  354 (490)
T 3ou5_A          275 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  354 (490)
T ss_dssp             EEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            888876311000 000000  0000000  01234456656667777777776444445555  9999999999999999


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      ||
T Consensus       355 G~  356 (490)
T 3ou5_A          355 GY  356 (490)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.66  E-value=6e-15  Score=143.21  Aligned_cols=250  Identities=9%  Similarity=-0.093  Sum_probs=151.9

Q ss_pred             ChHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      +++.+.+++.++++.....   +...++    ..++++.++++++.+.    ...+++|+||++|+..++..++...   
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~----~~~v~~~~g~~~a~~~~~~~a~~~~---  126 (426)
T 1sff_A           58 LHPKVVAAVEAQLKKLSHTCFQVLAYEP----YLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAAT---  126 (426)
T ss_dssp             TCHHHHHHHHHHTTTCSCCCTTTEECHH----HHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHhCCCccccccCCHH----HHHHHHHHHHhCCccc----ccEEEEeCchHHHHHHHHHHHHHhh---
Confidence            4577889888888653221   122233    3445556888873221    1248999999999999988543211   


Q ss_pred             HHhcCCCCCCCeEEecCCCcc-hHHHHHhhhcce-------------eEEEeccC----CccccCHHHHHHHHh-----h
Q 017569          145 RKEQGKPYDKPNIVTGANVQV-CWEKFARYFEVE-------------LKEVKLEE----GYYVMNPVKAVELVD-----E  201 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~-s~~~~~~~~G~~-------------v~~v~~~~----~~~~~d~~~L~~~i~-----~  201 (369)
                          +    +..|++.+++|. .+..++...|..             ++.+|++.    .++.+|+++|+++++     +
T Consensus       127 ----~----~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  198 (426)
T 1sff_A          127 ----K----RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE  198 (426)
T ss_dssp             ----T----CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred             ----C----CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence                0    236777776654 444555555543             67787753    125689999999997     4


Q ss_pred             cCcEEEEee-CCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCc
Q 017569          202 NTICVAAIL-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH  276 (369)
Q Consensus       202 ~~~~v~~~~-~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~h  276 (369)
                      ++++|+++. ++| ||.+.+    +++|.++|+++      ++++|+|++|+++..  ..+....+..-..+|.++  .+
T Consensus       199 ~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~di~s--~s  267 (426)
T 1sff_A          199 DIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLTT--FA  267 (426)
T ss_dssp             GEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEEE--EC
T ss_pred             ceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--ccchhhhhhcCCCCCEEE--Ec
Confidence            566776643 455 997767    99999999999      999999999996422  111111121112467665  56


Q ss_pred             cCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHH
Q 017569          277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFV  356 (369)
Q Consensus       277 K~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L  356 (369)
                      |+++++.++|+++++++ .. ..+.. ...      ..+  .+-+.....++.++|+.+..+.+.+ +..++.++++++|
T Consensus       268 K~~~~GlriG~~~~~~~-~~-~~l~~-~~~------~~~--~~~~~~~~~a~~aal~~~~~~~~~~-~~~~~~~~l~~~l  335 (426)
T 1sff_A          268 KSIAGGFPLAGVTGRAE-VM-DAVAP-GGL------GGT--YAGNPIACVAALEVLKVFEQENLLQ-KANDLGQKLKDGL  335 (426)
T ss_dssp             GGGGTSSCCEEEEEEHH-HH-TTSCT-TSB------CCS--SSSCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHH
T ss_pred             ccccCCCceEEEEEcHH-HH-hhhcc-CCc------CcC--CCCCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHH
Confidence            99876556799998652 21 12110 000      011  1222333455556666665443322 7778888888888


Q ss_pred             Hhc
Q 017569          357 IHS  359 (369)
Q Consensus       357 ~~~  359 (369)
                      ++.
T Consensus       336 ~~~  338 (426)
T 1sff_A          336 LAI  338 (426)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            774

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.66  E-value=7.8e-15  Score=142.93  Aligned_cols=202  Identities=10%  Similarity=-0.041  Sum_probs=127.3

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+.++.... +.......+...+++++++++++.+.     ..+++|+||++|+..++.+++..+..    .
T Consensus        47 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~al~~~~~~~~~----~  116 (430)
T 3i4j_A           47 RAEVGERMAAQAARLPF-VHGSQFSSDVLEEYAGRLARFVGLPT-----FRFWAVSGGSEATESAVKLARQYHVE----R  116 (430)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTTCEEHHHHHHHHHHHHHTTCTT-----CEEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred             CHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCcHHHHHHHHHHHHHHHHHh----c
Confidence            57788888877765322 22223345566788889999998765     25899999999999999998765332    2


Q ss_pred             CCCCCCCeEEecCCCcchHHHHHhhhcc---------------eeEEEeccCC--ccccCHHHHHHHHh----hcCcEEE
Q 017569          149 GKPYDKPNIVTGANVQVCWEKFARYFEV---------------ELKEVKLEEG--YYVMNPVKAVELVD----ENTICVA  207 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s~~~~~~~~G~---------------~v~~v~~~~~--~~~~d~~~L~~~i~----~~~~~v~  207 (369)
                      |. ..+++|++.+++|..+...+..++.               ++..+|.+..  .+..|+++|+++++    +++++|+
T Consensus       117 g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi  195 (430)
T 3i4j_A          117 GE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFM  195 (430)
T ss_dssp             TC-TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEE
T ss_pred             CC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEE
Confidence            21 1246888888877665544433332               3444554321  13457899999997    4456666


Q ss_pred             EeeCCC-CcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCC
Q 017569          208 AILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV  281 (369)
Q Consensus       208 ~~~~~~-~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~  281 (369)
                      ++..++ ++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......... -...|.++++  |.+.+
T Consensus       196 ~~p~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~~~--~g~~~~~~~~~~~~~di~t~s--K~l~~  265 (430)
T 3i4j_A          196 AEPVVGASDAALAPAPGYYERVRDICDEA------GIIFIADEVMSGMGR--CGSPLALSRWSGVTPDIAVLG--KGLAA  265 (430)
T ss_dssp             ECSSCCGGGTTCCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTTCCCSEEEEC--GGGTT
T ss_pred             EcCcccCcCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--ccchhhhhhhcCCCCcEEEEc--ccccC
Confidence            666666 8888766    99999999999      999999999986432  1111111111 1135677754  88876


Q ss_pred             C-CCeEEEEEe
Q 017569          282 Y-AGVGWVVWR  291 (369)
Q Consensus       282 p-~g~g~l~~~  291 (369)
                      + ++.|+++.+
T Consensus       266 G~~r~G~~~~~  276 (430)
T 3i4j_A          266 GYAPLAGLLAA  276 (430)
T ss_dssp             TSSCCEEEEEC
T ss_pred             CccccEEEEEC
Confidence            6 778998874

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.65  E-value=1.8e-14  Score=140.94  Aligned_cols=252  Identities=10%  Similarity=-0.126  Sum_probs=148.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++........+  ..+...++++.+++++|.+.       +++++||++|+..++.+++.....   .
T Consensus        82 ~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~-------v~~~~sGseA~~~al~~a~~~~~~---~  149 (433)
T 1z7d_A           82 CHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYDK-------VLMMNTGAEANETAYKLCRKWGYE---V  149 (433)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCCe-------EEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence            56888899888886543211112  33445566677888887543       899999999999999987642110   0


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHhhhc------------ceeEEEeccCCccccCHHHHHHHH-hhcCcEEEEeeCCC
Q 017569          148 QGKPYDKPNIVTGANVQVC-WEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELV-DENTICVAAILGST  213 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s-~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i-~~~~~~v~~~~~~~  213 (369)
                      .|....+++|++++++|.. ...++...|            .++..+|.      .|+++|++++ ++++++|+++..++
T Consensus       150 ~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~  223 (433)
T 1z7d_A          150 KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVCAFIVEPIQG  223 (433)
T ss_dssp             SCCCTTCCEEEEETTC--------------------------CEEEECT------TCHHHHHHHHTSTTEEEEEECSSBS
T ss_pred             cCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence            1111113678888776544 344444434            23444443      2899999999 56777777776667


Q ss_pred             CcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEE
Q 017569          214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (369)
Q Consensus       214 ~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l  288 (369)
                      ++|.+.    ++++|.++|+++      ++++|+|++|.++..  ......++..-...|.++  ..|+++++ .+.|++
T Consensus       224 ~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~t--~sK~l~~G~~~~G~v  293 (433)
T 1z7d_A          224 EAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVIL--LGKALSGGHYPISAV  293 (433)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEE
T ss_pred             CCCccCCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--CCcchhhHhcCCCCCEEE--ECccccCCCCCeEEE
Confidence            789764    799999999999      999999999976322  111111111112467775  45988766 568999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +.+++ .. +.+..  ..     ...+.  +-+....+++.++|+.+..+++.+ +..++.++++++|++.
T Consensus       294 ~~~~~-~~-~~l~~--~~-----~~~t~--~~~~~~~aaa~aal~~~~~~~~~~-~~~~~~~~l~~~L~~l  352 (433)
T 1z7d_A          294 LANDD-IM-LVIKP--GE-----HGSTY--GGNPLAASICVEALNVLINEKLCE-NAEKLGGPFLENLKRE  352 (433)
T ss_dssp             EECHH-HH-TTCCT--TC-----CCCTT--TTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             EECHH-HH-hhhcc--cc-----ccccC--CCCHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHH
Confidence            88642 21 12110  00     01111  112223344456666665443322 7788899999999875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.65  E-value=1.6e-14  Score=140.41  Aligned_cols=245  Identities=10%  Similarity=-0.131  Sum_probs=150.9

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      +|.+.+++.++++.... +...........++++.+++++|.+ +     ..+++|+||++|+..++.+++..       
T Consensus        61 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~gg~ea~~~ai~~~~~~-------  127 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLAH-AAANDFYNIPQLELAKKLVTYSPGNFQ-----KKVFFSNSGTEAIEASIKVVKNT-------  127 (419)
T ss_dssp             CHHHHHHHHHHHTTSCC-CSCSCSCCHHHHHHHHHHHHHSSCSSC-----EEEEEESSHHHHHHHHHHHHHTT-------
T ss_pred             CHHHHHHHHHHHhhCcc-ccccccCCHHHHHHHHHHHHhCCCCcC-----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence            58888998888865422 1111122344556777899999986 3     24899999999999999886541       


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHhhh-------------cceeEEEeccCCccc----------------cCHHHHH-
Q 017569          148 QGKPYDKPNIVTGANVQV-CWEKFARYF-------------EVELKEVKLEEGYYV----------------MNPVKAV-  196 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~-s~~~~~~~~-------------G~~v~~v~~~~~~~~----------------~d~~~L~-  196 (369)
                         .  +++|+++++++. .+..++...             +.+++.+|.+.+ ++                +|+++|+ 
T Consensus       128 ---~--~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~~  201 (419)
T 2eo5_A          128 ---G--RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP-YRNPWHINGYENPSELVNRVIEFIED  201 (419)
T ss_dssp             ---S--CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCS-SSCTTCCCTTTCHHHHHHHHHHHHHH
T ss_pred             ---h--CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcc-ccccccccccccchhhHHHHHHHHHH
Confidence               1  367888877654 333333221             135778887542 33                5789999 


Q ss_pred             HHHhh-----cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCC
Q 017569          197 ELVDE-----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL  267 (369)
Q Consensus       197 ~~i~~-----~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~  267 (369)
                      +++++     ++++|+++..++++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-..
T Consensus       202 ~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~~~g~--~g~~~~~~~~~~~  273 (419)
T 2eo5_A          202 YIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKY------GILLVDDEVQMGLGR--TGKLFAIENFNTV  273 (419)
T ss_dssp             THHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCC
T ss_pred             HHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CcchhhHHhcCCC
Confidence            98873     5556665544567897655    99999999999      999999999986432  1111111211124


Q ss_pred             CcEEEEcCccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-Hh
Q 017569          268 VKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CC  345 (369)
Q Consensus       268 ~Dsi~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~  345 (369)
                      .|.++++  |.++++ .+.|+++.+++ ..  .+ .  ...     ..+  .+-+.....++.++|+.+. +   .. +.
T Consensus       274 ~d~~t~s--K~~~~G~~riG~~~~~~~-~~--~~-~--~~~-----~~t--~~~n~~~~~aa~aal~~~~-~---~~~~~  334 (419)
T 2eo5_A          274 PDVITLA--KALGGGIMPIGATIFRKD-LD--FK-P--GMH-----SNT--FGGNALACAIGSKVIDIVK-D---LLPHV  334 (419)
T ss_dssp             CSEEEEC--GGGGTTTSCCEEEEEEGG-GC--CC--------------C--CCCCHHHHHHHHHHHHHHH-H---HHHHH
T ss_pred             CCEEEec--ccccCCccceEEEEEchH-hh--cC-C--ccc-----CCC--CCCCHHHHHHHHHHHHHHH-H---HHHHH
Confidence            5777644  777667 88999998653 22  22 1  000     111  1112222333334444432 2   23 78


Q ss_pred             hHHHHHHHHHHHhc
Q 017569          346 VDHKKLSSFFVIHS  359 (369)
Q Consensus       346 ~~~a~~l~~~L~~~  359 (369)
                      .++.++|.+.|++.
T Consensus       335 ~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          335 NEIGKIFAEELQGL  348 (419)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHh
Confidence            88899999999875

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.65  E-value=1.7e-14  Score=141.43  Aligned_cols=264  Identities=12%  Similarity=-0.011  Sum_probs=155.3

Q ss_pred             hHHHHHHHHHHhccCCCCCCCC-cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           69 EPECDKLVMASINKNYVDMDEY-PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      ++.+.+++.+.+....  +..+ ....++..++++.++++++.+.     ..+++|+||++|+..++.+++..+..    
T Consensus        68 ~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggsea~~~al~~~~~~~~~----  136 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTPGNL-----NHVFFTDSGSECALTAVKMVRAYWRL----  136 (449)
T ss_dssp             CHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHHHh----
Confidence            5788999888886532  1111 2333455677778888887653     24899999999999999988653211    


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHhhhc------------ceeEEEeccCCccc-----cC--------HHHHHHHHh-
Q 017569          148 QGKPYDKPNIVTGANVQV-CWEKFARYFE------------VELKEVKLEEGYYV-----MN--------PVKAVELVD-  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~-s~~~~~~~~G------------~~v~~v~~~~~~~~-----~d--------~~~L~~~i~-  200 (369)
                      .|.+ .+++|++.+++|. ....++...|            .+++.++++.. +.     +|        +++|+++++ 
T Consensus       137 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~~~~~~~~~~le~~l~~  214 (449)
T 3a8u_X          137 KGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL-ASNAYSRGMPKEGGIALADELLKLIEL  214 (449)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC-GGGTTCSSSCSSSHHHHHHHHHHHHHH
T ss_pred             cCCC-CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc-ccCccccCChHHHHHHHHHHHHHHHHh
Confidence            1111 1357877666554 3344444433            13556665321 22     46        999999997 


Q ss_pred             ---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEE
Q 017569          201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV  273 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~  273 (369)
                         +++++|+++..++++|.+.|    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.+++
T Consensus       215 ~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~di~s~  286 (449)
T 3a8u_X          215 HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH------NILLVFDEVITGFGR--TGSMFGADSFGVTPDLMCI  286 (449)
T ss_dssp             HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE
T ss_pred             cCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh------CCEEEEeccccCccc--cCcchhhhhcCCCCCEEEE
Confidence               45666666655577998877    99999999999      999999999965322  1110111111123577754


Q ss_pred             cCccCCCCC-CCeEEEEEeCCCCcccccccccC--ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          274 SGHKYGLVY-AGVGWVVWRTKDDLPDELVFHIN--YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       274 ~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~--y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                        .|+++++ ...|++++++ +.. +.+.....  .........+  .+-+.....++.++|+.+..+++.+ +..++.+
T Consensus       287 --sK~l~~G~~~~G~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~t--~~~~~~~~aa~~aal~~~~~~~~~~-~~~~~~~  359 (449)
T 3a8u_X          287 --AKQVTNGAIPMGAVIAST-EIY-QTFMNQPTPEYAVEFPHGYT--YSAHPVACAAGLAALCLLQKENLVQ-SVAEVAP  359 (449)
T ss_dssp             --CGGGGTTSSCCEEEEEEH-HHH-HHHHTCSSCTTSCSSCCCCT--TTTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHH
T ss_pred             --cccccCCCCceEEEEECH-HHH-HHhhccCcccccccccccCC--CcccHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence              4887654 4588888864 222 22211100  0000000011  1112222344445566554443322 7888899


Q ss_pred             HHHHHHHhcC
Q 017569          351 LSSFFVIHSS  360 (369)
Q Consensus       351 ~l~~~L~~~g  360 (369)
                      +++++|++++
T Consensus       360 ~l~~~L~~l~  369 (449)
T 3a8u_X          360 HFEKALHGIK  369 (449)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.64  E-value=1.3e-14  Score=142.10  Aligned_cols=253  Identities=11%  Similarity=-0.068  Sum_probs=154.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++........+  ..+...++.+++++++|.+       .+++++||++|+..++.+++.....   .
T Consensus        93 ~~p~v~~Ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~~~~~~~~---~  160 (439)
T 2oat_A           93 CHPKIVNALKSQVDKLTLTSRAF--YNNVLGEYEEYITKLFNYH-------KVLPMNTGVEAGETACKLARKWGYT---V  160 (439)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTS--EESSHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCHHHHHHHHHHHHhcCcccCcc--CCHHHHHHHHHHHHhcCCC-------EEEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence            56888899888886543211111  1223345556678877754       3899999999999999988642110   0


Q ss_pred             cCCCCCCCeEEecCCCc-chHHHHHhhhc------------ceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCC
Q 017569          148 QGKPYDKPNIVTGANVQ-VCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST  213 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h-~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~  213 (369)
                      .|....+++|++++++| .++..++...|            .++..+|.+      |+++|+++++ +++++|+++..++
T Consensus       161 ~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------d~~~le~~l~~~~~~~vi~ep~~~  234 (439)
T 2oat_A          161 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLPALERALQDPNVAAFMVEPIQG  234 (439)
T ss_dssp             TCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------CHHHHHHHTTSTTEEEEEECSSBT
T ss_pred             cCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------CHHHHHHHhCCCCEEEEEEECCCC
Confidence            11111135777777654 44455555544            345555542      7999999994 6677777766666


Q ss_pred             CcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEE
Q 017569          214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (369)
Q Consensus       214 ~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l  288 (369)
                      ++|.+.    ++++|.++|+++      |+++|+|++|.++..  ......++..-...|.++  ..|+++++ .+.|++
T Consensus       235 ~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~g~--~g~~~~~~~~~~~~Di~t--~sK~l~~G~~~~G~v  304 (439)
T 2oat_A          235 EAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENVRPDIVL--LGKALSGGLYPVSAV  304 (439)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEE
T ss_pred             CCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCcchhHHHhCCCCcEEE--ecccccCCCCCeEEE
Confidence            788765    799999999999      999999999975322  111111111112467765  56988766 568999


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      +++++ .. +.+..      .. ...+.  +-+.....++.++|+.+..+++.+ +..++.++++++|++++
T Consensus       305 ~~~~~-~~-~~l~~------~~-~~~t~--~~~~~~~aaa~aal~~~~~~~~~~-~~~~~~~~l~~~L~~l~  364 (439)
T 2oat_A          305 LCDDD-IM-LTIKP------GE-HGSTY--GGNPLGCRVAIAALEVLEEENLAE-NADKLGIILRNELMKLP  364 (439)
T ss_dssp             EECHH-HH-TTSCT------TS-SCCSS--TTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHTTSC
T ss_pred             EECHH-HH-hccCC------CC-cccCC--CcCHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHhc
Confidence            88642 21 22110      00 01111  112223445556666665543322 78889999999998875

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.64  E-value=3e-14  Score=139.78  Aligned_cols=201  Identities=10%  Similarity=-0.058  Sum_probs=131.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++...+  .......+...+++++++++++.+.     . +++|+||++|+..++.+++..+..    
T Consensus        66 ~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~-----~-v~~~~ggseA~~~al~~~~~~~~~----  133 (452)
T 3n5m_A           66 GRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEY-----V-IFFSNSGSEANETAFKIARQYYAQ----  133 (452)
T ss_dssp             CCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCE-----E-EEEESSHHHHHHHHHHHHHHHHHT----
T ss_pred             CCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCc-----e-EEEeCchHHHHHHHHHHHHHHHHh----
Confidence            358889998888865433  1223445667788889999998764     2 899999999999999998754211    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcc-------------eeEEEeccCC-c----------cccCHHHHHHHHh---
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEG-Y----------YVMNPVKAVELVD---  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~-------------~v~~v~~~~~-~----------~~~d~~~L~~~i~---  200 (369)
                      .|.+ .+++|++.+++|..+...+..++.             ++..++.... .          ...++++|+++++   
T Consensus       134 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~  212 (452)
T 3n5m_A          134 KGEP-HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL  212 (452)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred             cCCC-CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence            1111 246788877776543332222221             2444543210 0          1112899999998   


Q ss_pred             -hcCcEEEEeeC-CCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          201 -ENTICVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       201 -~~~~~v~~~~~-~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                       +++++|+++.+ +| +|.+.|    +++|.++|+++      |+++|+|++|.++..  .......+..-...|.++++
T Consensus       213 ~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~t~s  283 (452)
T 3n5m_A          213 SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH------GALLISDEVICGFGR--TGKAFGFMNYDVKPDIITMA  283 (452)
T ss_dssp             GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTCCCSEEEEC
T ss_pred             CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc------CCEEEEecchhCCCc--ccccchhhhcCCCCCEEeec
Confidence             45677777777 78 998766    99999999999      999999999886432  11111111111246777754


Q ss_pred             CccCCCCC-CCeEEEEEeC
Q 017569          275 GHKYGLVY-AGVGWVVWRT  292 (369)
Q Consensus       275 ~hK~l~~p-~g~g~l~~~~  292 (369)
                        |.+.++ ++.|+++.++
T Consensus       284 --K~l~~G~~~ig~~~~~~  300 (452)
T 3n5m_A          284 --KGITSAYLPLSATAVKR  300 (452)
T ss_dssp             --GGGGTTSSCCEEEEEEH
T ss_pred             --ccccCCCcceEEEEECH
Confidence              777666 7889998754

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.63  E-value=2.2e-14  Score=140.06  Aligned_cols=198  Identities=9%  Similarity=-0.138  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++... .+....+..++..+++++++++++...+    ...++|+||++|+..++.+++...      
T Consensus        60 ~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~~~~~~~------  128 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANPA-GATILSASNAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYRAIVKAT------  128 (439)
T ss_dssp             SCHHHHHHHHHHHHSCS-CSCSSSSEEHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHHHHHHHh------
Confidence            45788888888876542 2222334556777888999999865431    248999999999999999875421      


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHhhhccee--------------EEEeccCCcccc-----CHHHHHHHH----hhcC
Q 017569          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVEL--------------KEVKLEEGYYVM-----NPVKAVELV----DENT  203 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~~v--------------~~v~~~~~~~~~-----d~~~L~~~i----~~~~  203 (369)
                           .++.|++.++. |..+..++...|...              ..+|.+.+ +.-     |+++|++++    .+++
T Consensus       129 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~  202 (439)
T 3dxv_A          129 -----GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAVPAGSI  202 (439)
T ss_dssp             -----SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTSCTTCE
T ss_pred             -----CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhcCCCCE
Confidence                 13456655554 455555544444322              23333321 122     799999999    4567


Q ss_pred             cEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      ++|+++.+++++|.+.+    +++|.++|+++      ++++|+|++|+++..  .......+..-...|.++  ..|.+
T Consensus       203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~g~g~--~g~~~~~~~~~~~~di~s--~sK~~  272 (439)
T 3dxv_A          203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAH------GILVVCDEVKVGLAR--SGRLHCFEHEGFVPDILV--LGKGL  272 (439)
T ss_dssp             EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTCTTT--TSSSSGGGGTTCCCSEEE--ECGGG
T ss_pred             EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhcCCCCCEEE--Ecchh
Confidence            88888888889999877    99999999999      999999999986322  111011121112467665  45888


Q ss_pred             CCCCCeEEEEEeC
Q 017569          280 LVYAGVGWVVWRT  292 (369)
Q Consensus       280 ~~p~g~g~l~~~~  292 (369)
                      +++++.|+++.++
T Consensus       273 ~~G~riG~~~~~~  285 (439)
T 3dxv_A          273 GGGLPLSAVIAPA  285 (439)
T ss_dssp             GTTSCCEEEEEEH
T ss_pred             cCCcceEEEEECH
Confidence            7767789998754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.62  E-value=4.5e-14  Score=137.39  Aligned_cols=245  Identities=12%  Similarity=-0.046  Sum_probs=148.2

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.... +. +  ......+++++++++++ +.     ..+++++||++|+..++..++..       
T Consensus        69 ~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~~-----~~v~~~~ggsea~~~al~~a~~~-------  131 (427)
T 3fq8_A           69 AHPEVIEALKVAMEKGTS-FG-A--PCALENVLAEMVNDAVP-SI-----EMVRFVNSGTEACMAVLRIMRAY-------  131 (427)
T ss_dssp             TCHHHHHHHHHHHTTCSC-CS-S--CCHHHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred             CCHHHHHHHHHHHHhCCC-cC-C--CCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHh-------
Confidence            368888998888865432 11 1  34566678888999987 33     24899999999999999876542       


Q ss_pred             cCCCCCCCeEEecCCCcchHH-HHHhhhcce-------------------eEEEeccCCccccCHHHHHHHHhh---cCc
Q 017569          148 QGKPYDKPNIVTGANVQVCWE-KFARYFEVE-------------------LKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~-~~~~~~G~~-------------------v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (369)
                      .|    +.+|++.+++|+.+. .+....|..                   +..+|.+      |+++|++++++   +++
T Consensus       132 ~~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~  201 (427)
T 3fq8_A          132 TG----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------DLEAVKALFAENPGEIA  201 (427)
T ss_dssp             HC----CCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT------CHHHHHHHHHHSTTTEE
T ss_pred             hC----CCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC------CHHHHHHHHHhCCCCEE
Confidence            11    356777665554322 222221211                   2222221      89999999987   567


Q ss_pred             EEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|+++..++++|.+.+    +++|.++|+++      ++++|+|++|+++ .  .......+..-...|.++++  |.++
T Consensus       202 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~  270 (427)
T 3fq8_A          202 GVILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVITGF-R--IAYGGVQEKFGVTPDLTTLG--KIIG  270 (427)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBT-T--TBTTHHHHHTTCCCSEEEEC--GGGG
T ss_pred             EEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchhhHhcCCCCChhhhh--hhhh
Confidence            8888888888898888    99999999999      9999999999865 2  11111111111235777665  8887


Q ss_pred             CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      ++++.|+++.++ +.. +.+.....+..    ..+  .+-+.....+..++++.+..+++.+ +..++.++++++|++.
T Consensus       271 ~G~~~G~~~~~~-~~~-~~~~~~~~~~~----~~t--~~~~~~~~aa~~aal~~~~~~~~~~-~~~~~~~~~~~~l~~~  340 (427)
T 3fq8_A          271 GGLPVGAYGGKR-EIM-QLVAPAGPMYQ----AGT--LSGNPLAMTAGIKTLELLRQPGTYE-YLDQITKRLSDGLLAI  340 (427)
T ss_dssp             TTSSCEEEEECH-HHH-TTBTTTSSBCC----CCT--TTTCHHHHHHHHHHHHHHTSTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEcH-HHH-HhhccCCCccc----cCC--CCcCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence            767789987743 222 22211000000    001  1112222334445555554444432 6667777777777653

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.62  E-value=5.4e-15  Score=143.85  Aligned_cols=233  Identities=14%  Similarity=0.082  Sum_probs=155.7

Q ss_pred             HHHHHHHHhhhhcCCCCcccccccc------CCChHHHHHHHHHHhccCCC-CCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 017569           41 AAYQVINDELMLDGNPRLNLASFVT------TWMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (369)
Q Consensus        41 ~i~~~l~~~~~~~~~p~~~l~~~~~------~~~~~~v~~~~~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (369)
                      .|+.. .+.+..+.+|.+||+.++.      ++..+.|+++...+++.+.. .|....|..+|++++.+++   +|-...
T Consensus        31 ~i~~l-~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~  106 (420)
T 4h51_A           31 VIFDL-AKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVE  106 (420)
T ss_dssp             HHHHH-HHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---C
T ss_pred             hHHHH-HHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCcc
Confidence            34443 3345566778888876642      12337788887777765543 4677789999999976654   343321


Q ss_pred             CCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcce-eEEEec-cCCccccC
Q 017569          114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKL-EEGYYVMN  191 (369)
Q Consensus       114 ~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~-v~~v~~-~~~~~~~d  191 (369)
                      . .....+-|.|||.|+..++..+...+         ...+++|++|+|+|..+...++..|+. +...+. +++++.+|
T Consensus       107 ~-~~~~~~qt~ggtga~~~a~~~l~~~~---------~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d  176 (420)
T 4h51_A          107 L-ENLVAVQTLSGTGAVSLGAKLLTRVF---------DAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLN  176 (420)
T ss_dssp             G-GGEEEEEEEHHHHHHHHHHHHHTTTS---------CTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEEC
T ss_pred             c-cccceeeecCchHHHHHHHHHHHHhc---------CCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCC
Confidence            1 11234568899999988877764321         112468999999999999999999997 444444 34557899


Q ss_pred             HHHHHHHHhh---cCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccC-CCccc-cc
Q 017569          192 PVKAVELVDE---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEW-DF  263 (369)
Q Consensus       192 ~~~L~~~i~~---~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~-~~  263 (369)
                      .+.+.+.+..   ++++++.+.|+||||..   +.+++|+++|+++      +++++.|.+|.++...-.. +.... .+
T Consensus       177 ~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~------~~~~~~D~~Y~~~~~~~~~~~~~~~~~~  250 (420)
T 4h51_A          177 FEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK------HHQVFFDSAYQGYASGSLDTDAYAARLF  250 (420)
T ss_dssp             HHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             HHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceEeeehhhhhhccCCcccchHHHHhH
Confidence            9999888753   56788889999999998   5688999999999      9999999999886541000 00000 01


Q ss_pred             cCCCCcE-EEEcCcc-CCCCCCCeEEEEEeCC
Q 017569          264 RLPLVKS-INVSGHK-YGLVYAGVGWVVWRTK  293 (369)
Q Consensus       264 ~~~~~Ds-i~~~~hK-~l~~p~g~g~l~~~~~  293 (369)
                      ...+... ++.+.-| +++..+.+|++++..+
T Consensus       251 ~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~  282 (420)
T 4h51_A          251 ARRGIEVLLAQSFSKNMGLYSERAGTLSLLLK  282 (420)
T ss_dssp             HHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             HhhCceEEEEeccccccccccCceEEEEeccc
Confidence            0111222 3345667 5667899999987654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.62  E-value=1.6e-15  Score=152.69  Aligned_cols=216  Identities=12%  Similarity=0.035  Sum_probs=145.3

Q ss_pred             ccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHH-HHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCV-NMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~-~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      ++|+.+.+..+++.+.+.+.+.+..  ..|....+..++.+++. .++.+.++..........+++|+|+++++.+++.+
T Consensus       107 i~l~~g~~~~~~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~  184 (546)
T 2zy4_A          107 LSYVRDQLGLDPAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFES  184 (546)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             hecccCCCCCCChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            3444455555556555555555532  23444445666666644 45566554321000113589999999999988877


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh--cceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~--G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +..+.        .-..++.|++++++|+.+..++.+.  |++++.+|++++ ++.+|+++|++++++++++|++++|+|
T Consensus       185 l~~~~--------l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~N  256 (546)
T 2zy4_A          185 LKLNG--------LLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSN  256 (546)
T ss_dssp             HHHTT--------SSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCS
T ss_pred             hhhhh--------cCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCC
Confidence            42110        0012468999999999999886654  577888888653 478999999998888899999999999


Q ss_pred             CcccCCC---HHHHHHHH--HHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEE
Q 017569          214 LTGEFED---VKLLHDLL--TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~--~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      |||.+.+   +++|.++|  +++      ++++++|++|+.+...   +...... ....+.+..+.+|+++ .++.+|+
T Consensus       257 PtG~~~~~~~l~~l~~~a~~~~~------~~~ii~De~y~~~~~~---~~s~~~~-~~~~~i~~~S~SK~~g~~GlRiG~  326 (546)
T 2zy4_A          257 PPSVKMDQRSLERVRNIVAEHRP------DLMILTDDVYGTFADD---FQSLFAI-CPENTLLVYSFSKYFGATGWRLGV  326 (546)
T ss_dssp             SSCBCCCHHHHHHHHHHHHHTCT------TCEEEEECTTGGGSTT---CCCHHHH-CGGGEEEEEESTTTTTCGGGCEEE
T ss_pred             CCCccCCHHHHHHHHHHHHhccC------CcEEEEeCcchhhccc---CcCHHHh-CCCCEEEEEeCccccCCCCcceEE
Confidence            9999865   66678888  678      9999999999975431   1000111 1234567778999985 4567899


Q ss_pred             EEEeCC
Q 017569          288 VVWRTK  293 (369)
Q Consensus       288 l~~~~~  293 (369)
                      ++..+.
T Consensus       327 ~~~~~~  332 (546)
T 2zy4_A          327 VAAHQQ  332 (546)
T ss_dssp             EEEESS
T ss_pred             EEECCH
Confidence            998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.61  E-value=4.9e-14  Score=137.42  Aligned_cols=249  Identities=10%  Similarity=-0.027  Sum_probs=142.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.........    ....+++++++++++ +.     ..+++++||++|+..++.+++...      
T Consensus        72 ~~p~v~~a~~~~~~~~~~~~~~~----~~~~~l~~~la~~~~-~~-----~~v~~~~sGsea~~~ai~~a~~~~------  135 (434)
T 3l44_A           72 AHPHITKAITTAAENGVLYGTPT----ALEVKFAKMLKEAMP-AL-----DKVRFVNSGTEAVMTTIRVARAYT------  135 (434)
T ss_dssp             TCHHHHHHHHHHHHHCSCCSSCC----HHHHHHHHHHHHHCT-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCcCCCCCC----HHHHHHHHHHHHhCC-CC-----CEEEEeCchHHHHHHHHHHHHHhh------
Confidence            35788888888776532211122    233455666888876 32     248999999999999999886531      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHH-HhhhcceeEEEeccCCccc-------------cCHHHHHHHHh---hcCcEEEEee
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKF-ARYFEVELKEVKLEEGYYV-------------MNPVKAVELVD---ENTICVAAIL  210 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~-~~~~G~~v~~v~~~~~~~~-------------~d~~~L~~~i~---~~~~~v~~~~  210 (369)
                           .+++|++.+++|..+... +...|..+..+......+.             -|+++|+++++   +++++|+++.
T Consensus       136 -----~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep  210 (434)
T 3l44_A          136 -----GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEP  210 (434)
T ss_dssp             -----CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred             -----CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcC
Confidence                 145788877766543332 2222322111111000011             18999999997   3566777777


Q ss_pred             CCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       211 ~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      .++++|.+.+    +++|.++|+++      ++++|+|++|.++ .  .......+..-...|.++++  |.++++++.|
T Consensus       211 ~~~~~G~~~~~~~~l~~l~~l~~~~------~illI~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG  279 (434)
T 3l44_A          211 IVGNFGIVEPKPGFLEKVNELVHEA------GALVIYDEVITAF-R--FMYGGAQDLLGVTPDLTALG--KVIGGGLPIG  279 (434)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTT-T--SSSSCHHHHHTCCCSEEEEE--GGGGTTSSCE
T ss_pred             CCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccce-e--ccccHHHHHcCCCCCeeehh--hhhcCCcCee
Confidence            7777777776    99999999999      9999999999875 2  11111111111235666654  7777788999


Q ss_pred             EEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          287 WVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      +++.++ +.. +.+.... .+.++   .    .+-+....++..++|+.+..+.+.+ +..++.+++++.|++
T Consensus       280 ~~~~~~-~i~-~~~~~~~~~~~~~---t----~~~~~~a~aaa~aal~~~~~~~~~~-~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          280 AYGGKK-EIM-EQVAPLGPAYQAG---T----MAGNPASMASGIACLEVLQQEGLYE-KLDELGATLEKGILE  342 (434)
T ss_dssp             EEEECH-HHH-TTBTTTSSBCCCC---T----TTTCHHHHHHHHHHHHHHTSTTHHH-HHHHHHHHHHHHHHH
T ss_pred             eEEEcH-HHH-HhhccCCCcccCC---C----CCcCHHHHHHHHHHHHHHHcccHHH-HHHHHHHHHHHHHHH
Confidence            987643 222 1211100 00110   1    1112222333345555554433332 666777777777765

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.61  E-value=7e-14  Score=138.24  Aligned_cols=261  Identities=12%  Similarity=-0.020  Sum_probs=157.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.....+.......+...++.++++++++.+.     ..+.+++||+||+..++++++..+..    
T Consensus        72 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-----~~v~~~~sGseA~~~aik~a~~~~~~----  142 (472)
T 3hmu_A           72 GRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-----NHVFFAGGGSEANDTNIRMVRTYWQN----  142 (472)
T ss_dssp             CCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHHHh----
Confidence            358888988888866443333333345566677888999886643     24899999999999999999875321    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhcc------------eeEEEeccCCccc----cC--------HHHHHHHHh---
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELKEVKLEEGYYV----MN--------PVKAVELVD---  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~----~d--------~~~L~~~i~---  200 (369)
                      .|.+ .+.+||+.+++|..+...+..++.            ++..+|... .++    .|        +++|+++++   
T Consensus       143 ~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~~~~~~~~~~~~~~~le~~i~~~~  220 (472)
T 3hmu_A          143 KGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN-WWAEGGDMDPEEFGLARARELEEAILELG  220 (472)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC-HHHHCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc-cccCCcccCHHHHHHHHHHHHHHHHHhcC
Confidence            1211 245777777665543333322222            355565422 011    33        788999887   


Q ss_pred             -hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcC
Q 017569          201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (369)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~  275 (369)
                       +++++|++...++++|.+.+    +++|.++|+++      |+++|+|++|.++..  ..........-...|.++++ 
T Consensus       221 ~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr--~G~~~a~~~~~v~pdi~t~s-  291 (472)
T 3hmu_A          221 ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY------DILLIADEVICGFGR--TGNWFGTQTMGIRPHIMTIA-  291 (472)
T ss_dssp             GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTCCCSEEEEC-
T ss_pred             CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEccccCCcc--cCccchhHHhCCCCceeeec-
Confidence             45677777777778788766    99999999999      999999999987532  11111111111246788765 


Q ss_pred             ccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhh-HHHHHHH
Q 017569          276 HKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCV-DHKKLSS  353 (369)
Q Consensus       276 hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~-~~a~~l~  353 (369)
                       |.+.++ ++.|+++.+++ .. +.+  .......   ..+.  +-+....++..++|+.+..+++.+ +.. ++.++++
T Consensus       292 -K~l~gg~~plG~v~~~~~-i~-~~~--~~~~~~~---~~t~--~~np~a~aAa~aaL~~~~~~~~~~-~~~~~~~~~l~  360 (472)
T 3hmu_A          292 -KGLSSGYAPIGGSIVCDE-VA-HVI--GKDEFNH---GYTY--SGHPVAAAVALENLRILEEENILD-HVRNVAAPYLK  360 (472)
T ss_dssp             -GGGTTTSSCCEEEEEEHH-HH-HHH--TTSCBCC---CCTT--TTCHHHHHHHHHHHHHHHHTTHHH-HHHHTHHHHHH
T ss_pred             -hhhhcCCcceEEEEECHH-HH-Hhc--ccCCccc---cCCC--CCCHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence             887665 67888888542 21 222  1110000   1111  111122233334555554443322 666 7889999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      +.|+++
T Consensus       361 ~~L~~l  366 (472)
T 3hmu_A          361 EKWEAL  366 (472)
T ss_dssp             HHHHGG
T ss_pred             HHHHHH
Confidence            999775

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.60  E-value=2.8e-14  Score=140.43  Aligned_cols=204  Identities=12%  Similarity=-0.030  Sum_probs=132.7

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.....+.......+...+++++++++++.+.     ..+++|+||++|+..++.+++..+..    
T Consensus        67 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~ggseA~~~al~~~~~~~~~----  137 (459)
T 4a6r_A           67 GRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF-----DRVFYTNSGSESVDTMIRMVRRYWDV----  137 (459)
T ss_dssp             CCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            357888888888766443333333445667788889999987654     24899999999999999998875421    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhc-------------ceeEEEeccC----CccccC--------HHHHHHHHh--
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFE-------------VELKEVKLEE----GYYVMN--------PVKAVELVD--  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G-------------~~v~~v~~~~----~~~~~d--------~~~L~~~i~--  200 (369)
                      .|.+ .+++|++.+++|..+...+..++             .++..+++..    +.+ +|        +++|+++++  
T Consensus       138 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~  215 (459)
T 4a6r_A          138 QGKP-EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI  215 (459)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence            1211 24678887777654433333222             1345555321    112 44        789999887  


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                        +++++|++...++++|.+.+    +++|.++|+++      |+++|+|++|.++..  ..........-...|.++++
T Consensus       216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~G~~~~~~~~~~~pdi~t~s  287 (459)
T 4a6r_A          216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY------DVLLVADEVICGFGR--TGEWFGHQHFGFQPDLFTAA  287 (459)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEEC
T ss_pred             CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCCCCCeeehh
Confidence              34566666666666677666    99999999999      999999999986432  11111111111246777765


Q ss_pred             CccCCCCC-CCeEEEEEeC
Q 017569          275 GHKYGLVY-AGVGWVVWRT  292 (369)
Q Consensus       275 ~hK~l~~p-~g~g~l~~~~  292 (369)
                        |.+.++ ++.|+++.++
T Consensus       288 --K~l~gg~~~lg~v~~~~  304 (459)
T 4a6r_A          288 --KGLSSGYLPIGAVFVGK  304 (459)
T ss_dssp             --GGGGTTSSCCEEEEECH
T ss_pred             --hhhcCCCCCccceeeCH
Confidence              877655 6889888753

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.60  E-value=1.9e-13  Score=134.09  Aligned_cols=203  Identities=13%  Similarity=0.020  Sum_probs=125.3

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++..... .......+...++.++++++++.+.     ..+.+|+||++|+..++.+++..+..    
T Consensus        61 ~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~al~~~~~~~~~----  130 (448)
T 3dod_A           61 RKKELDDAIKKQLGKIAHS-TLLGMTNVPATQLAETLIDISPKKL-----TRVFYSDSGAEAMEIALKMAFQYWKN----  130 (448)
T ss_dssp             SCHHHHHHHHHHHTTCSCC-CCSSSEEHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            3588889888888654321 1223444566788889999986543     24899999999999999998875321    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhc-------------ceeEEEeccCCcccc-----------CHHHHHHHHh---
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFE-------------VELKEVKLEEGYYVM-----------NPVKAVELVD---  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G-------------~~v~~v~~~~~~~~~-----------d~~~L~~~i~---  200 (369)
                      .|.+ .+++|++.+++|......+..++             .++..+|... .++.           |+++|+++++   
T Consensus       131 ~G~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~  208 (448)
T 3dod_A          131 IGKP-EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY-VYRSESGDPDECRDQCLRELAQLLEEHH  208 (448)
T ss_dssp             TTCT-TCCEEEEEC-----------------------------CEEECCCC-CTTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred             hCCC-CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc-cccCCccchhhhhHHHHHHHHHHHHhCC
Confidence            1211 14688888887655433332222             1234455432 2332           5899999997   


Q ss_pred             hcCcEEEEeeCC-CCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcC
Q 017569          201 ENTICVAAILGS-TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (369)
Q Consensus       201 ~~~~~v~~~~~~-~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~  275 (369)
                      +++++|++...+ +++|.+.+    +++|.++|+++      |+++|+|++|.++..  ..........-...|.++++ 
T Consensus       209 ~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~--~g~~~a~~~~~~~~di~t~s-  279 (448)
T 3dod_A          209 EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY------DVLMIVDEVATGFGR--TGKMFACEHENVQPDLMAAG-  279 (448)
T ss_dssp             GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC-
T ss_pred             CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--ccchhhhhhcCCCCCEEEec-
Confidence            345566666665 77787655    99999999999      999999999986432  11111111111236777754 


Q ss_pred             ccCCCCCC-CeEEEEEeC
Q 017569          276 HKYGLVYA-GVGWVVWRT  292 (369)
Q Consensus       276 hK~l~~p~-g~g~l~~~~  292 (369)
                       |.+.+++ +.|+++.++
T Consensus       280 -K~l~~G~~~ig~v~~~~  296 (448)
T 3dod_A          280 -KGITGGYLPIAVTFATE  296 (448)
T ss_dssp             -GGGGTTSSCCEEEEEEH
T ss_pred             -ccccCCcCceEEEEECH
Confidence             8887774 889888764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.60  E-value=7.8e-14  Score=137.31  Aligned_cols=205  Identities=13%  Similarity=-0.050  Sum_probs=132.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.....+.......+...++.++++++++.+.     ..+.+|+||++|+..++.+++..+..    
T Consensus        68 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~gGseA~~~al~~~~~~~~~----  138 (460)
T 3gju_A           68 GRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-----SRVYFGLSGSDANETNIKLIWYYNNV----  138 (460)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            357788888887765433333333445566778888999876554     24899999999999999998864321    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhh-------------cceeEEEeccC----CccccC--------HHHHHHHHh--
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYF-------------EVELKEVKLEE----GYYVMN--------PVKAVELVD--  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~-------------G~~v~~v~~~~----~~~~~d--------~~~L~~~i~--  200 (369)
                      .|.+ .+.+|++.+++|..+...+..+             +.++..+|+..    ++..++        +++|+++++  
T Consensus       139 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~  217 (460)
T 3gju_A          139 LGRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE  217 (460)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence            1211 2467887776664433222222             12355666432    111222        689999887  


Q ss_pred             --hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                        +++++|++...++++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++
T Consensus       218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~~pdi~t~s  289 (460)
T 3gju_A          218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY------DVLLVADEVVTGFGR--LGTMFGSDHYGIKPDLITIA  289 (460)
T ss_dssp             CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTCCCSEEEEC
T ss_pred             CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCCCCCeeeee
Confidence              45677888877777787655    99999999999      999999999986432  11111111111245777754


Q ss_pred             CccCCCCC-CCeEEEEEeC
Q 017569          275 GHKYGLVY-AGVGWVVWRT  292 (369)
Q Consensus       275 ~hK~l~~p-~g~g~l~~~~  292 (369)
                        |.+.++ ++.|+++.++
T Consensus       290 --K~l~gG~~~lg~v~~~~  306 (460)
T 3gju_A          290 --KGLTSAYAPLSGVIVAD  306 (460)
T ss_dssp             --GGGTTTSSCCEEEEEEH
T ss_pred             --hhhcCCCCCeEEEEECH
Confidence              888766 5889888764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.59  E-value=8.5e-14  Score=137.77  Aligned_cols=267  Identities=12%  Similarity=-0.087  Sum_probs=157.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++...+.+. +....+...++.++++++++.+.     ..+.+++||++|+..++.+++..+..    
T Consensus        71 ~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~Aik~a~~~~~~----  140 (476)
T 3i5t_A           71 GRREIVDAMAHQAMVLPYASP-WYMATSPAARLAEKIATLTPGDL-----NRIFFTTGGSTAVDSALRFSEFYNNV----  140 (476)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCT-TTCBCHHHHHHHHHHHTTSSTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHhccCccc-CccCCHHHHHHHHHHHhcCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence            368888888888765433222 13445667788889999986553     24899999999999999999876432    


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhh-c------------ceeEEEeccCC-c-cccC--------HHHHHHHHh----
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYF-E------------VELKEVKLEEG-Y-YVMN--------PVKAVELVD----  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~-G------------~~v~~v~~~~~-~-~~~d--------~~~L~~~i~----  200 (369)
                      .|.. .+.+||+.+++|..+...+..+ |            .++..++.... . +..|        +++|+++++    
T Consensus       141 ~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  219 (476)
T 3i5t_A          141 LGRP-QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP  219 (476)
T ss_dssp             TTCT-TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cCCC-CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence            2211 2457777776655433332222 2            12344443210 0 1122        789999887    


Q ss_pred             hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcC
Q 017569          201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSG  275 (369)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~  275 (369)
                      +++++|++..+++++|.+.+    +++|.++|+++      |+++|+|++|.++..  ........ ..-...|.++++ 
T Consensus       220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~------gillI~DEv~~g~gr--~G~~~~~~~~~~v~pdi~t~s-  290 (476)
T 3i5t_A          220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH------DILYISDEVVTGFGR--CGEWFASEKVFGVVPDIITFA-  290 (476)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHTTCCCCSEEEEC-
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--ccCceeeecccCCCcchhhhh-
Confidence            45678888888888887654    99999999999      999999999987432  11111111 111135777765 


Q ss_pred             ccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHH
Q 017569          276 HKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSF  354 (369)
Q Consensus       276 hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~  354 (369)
                       |.+.++ ++.|+++.+++ .. +.+..............+.  +-+.....+..++|+.+..+++.+ +..++.+++++
T Consensus       291 -K~l~~G~~plg~v~~~~~-i~-~~~~~~~~~~~~~~~~~t~--~~np~a~aAa~aaL~~~~~~~~~~-~~~~~~~~l~~  364 (476)
T 3i5t_A          291 -KGVTSGYVPLGGLAISEA-VL-ARISGENAKGSWFTNGYTY--SNQPVACAAALANIELMEREGIVD-QAREMADYFAA  364 (476)
T ss_dssp             -GGGGTTSSCCEEEEECHH-HH-HTTSGGGCTTCEECCCCTT--TTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHH
T ss_pred             -hhhcCCCcCeEEEEECHH-HH-HHHhcCCcccccccccCCC--CcCHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Confidence             888777 78888887542 21 2221110000000000111  111122333345555554444332 77888899999


Q ss_pred             HHHhcC
Q 017569          355 FVIHSS  360 (369)
Q Consensus       355 ~L~~~g  360 (369)
                      .|++++
T Consensus       365 ~L~~l~  370 (476)
T 3i5t_A          365 ALASLR  370 (476)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            998754

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.59  E-value=6.5e-14  Score=136.46  Aligned_cols=253  Identities=13%  Similarity=-0.081  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+.++........  .......++++.++++++.+.     ..+++|+||++|+..++.+++.. .      
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~a~~~~~~~-~------  126 (433)
T 1zod_A           61 HPEIVSVIGEYAGKLDHLFSE--MLSRPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLV-T------  126 (433)
T ss_dssp             CHHHHHHHHHHHHHCCCCCTT--CCCHHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHH-H------
T ss_pred             CHHHHHHHHHHHHhCcccccc--cCCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh-h------
Confidence            577888888877553221111  223455667778999998754     24899999999999999876542 1      


Q ss_pred             CCCCCCCeEEecCCCcch-HHHHHhhh-----------cceeEEEeccCC-----------ccccCHHHHHHHHhh----
Q 017569          149 GKPYDKPNIVTGANVQVC-WEKFARYF-----------EVELKEVKLEEG-----------YYVMNPVKAVELVDE----  201 (369)
Q Consensus       149 g~~~~~~~Vi~s~~~h~s-~~~~~~~~-----------G~~v~~v~~~~~-----------~~~~d~~~L~~~i~~----  201 (369)
                      |    +++|++.+++|.. ...+....           ..+++.+++...           .+.+|+++|++++++    
T Consensus       127 ~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~  202 (433)
T 1zod_A          127 G----KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG  202 (433)
T ss_dssp             T----CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCS
T ss_pred             C----CCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCC
Confidence            1    3578877766543 32222221           124555654310           123579999999973    


Q ss_pred             cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCcc
Q 017569          202 NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK  277 (369)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK  277 (369)
                      ++++|+++..++++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++  |
T Consensus       203 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~g~--~g~~~~~~~~~~~~di~s~s--K  272 (433)
T 1zod_A          203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILTLS--K  272 (433)
T ss_dssp             CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--H
T ss_pred             CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CchHhHHhhcCCCCCEEEec--c
Confidence            4556665544577897655    99999999999      999999999986432  11111111111235666544  8


Q ss_pred             CCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHH
Q 017569          278 YGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVI  357 (369)
Q Consensus       278 ~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~  357 (369)
                      .++++.+.|++++++ +.. +.+.. ..+..    ..+.  +-+.....++.++++.+..+++.+ +..++.++++++|+
T Consensus       273 ~~~~G~~ig~~~~~~-~~~-~~~~~-~~~~~----~~t~--~~~~~~~~a~~aal~~~~~~~~~~-~~~~~~~~l~~~l~  342 (433)
T 1zod_A          273 TLGAGLPLAAIVTSA-AIE-ERAHE-LGYLF----YTTH--VSDPLPAAVGLRVLDVVQRDGLVA-RANVMGDRLRRGLL  342 (433)
T ss_dssp             HHHTTSSCEEEEECH-HHH-HHHHH-TTCCC----CCTT--TTCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHH
T ss_pred             cccCCCCeeEEEEhH-HHH-Hhhcc-CCCCC----CCCC--CcCHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHH
Confidence            877678899998864 222 22211 11110    0111  112222333445555554444322 67777888888887


Q ss_pred             hc
Q 017569          358 HS  359 (369)
Q Consensus       358 ~~  359 (369)
                      ++
T Consensus       343 ~l  344 (433)
T 1zod_A          343 DL  344 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.58  E-value=1.6e-13  Score=134.73  Aligned_cols=264  Identities=11%  Similarity=-0.071  Sum_probs=151.2

Q ss_pred             ChHHHH-H-HHHH---HhccCCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           68 MEPECD-K-LVMA---SINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        68 ~~~~v~-~-~~~~---~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      .+|.+. + ++.+   .+..... +. .....+...++.+.++++++ .+.     ..+.+|+||++|+..++.+++...
T Consensus        71 ~~p~v~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~la~~la~~~~~~~~-----~~v~~~~~gseA~~~aik~a~~~~  143 (449)
T 2cjg_A           71 NPPALVDDREFHAELMQAALNKP-SN-SDVYSVAMARFVETFARVLGDPAL-----PHLFFVEGGALAVENALKAAFDWK  143 (449)
T ss_dssp             SCHHHHTCHHHHHHHHHHHTCCC-CT-TTCCCHHHHHHHHHHHHHHCCTTC-----CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCC-CC-cccCCHHHHHHHHHHHHhcCCCCC-----CEEEEeCchHHHHHHHHHHHHHHh
Confidence            357788 7 8888   6544322 11 11233445567777888887 222     358999999999999998876432


Q ss_pred             HHHHHhcCCCCC-CCeEEecCCCcchHHH-HHhhh--------cc-----eeEEEeccC--Cc-------cccCHHHHHH
Q 017569          142 QQKRKEQGKPYD-KPNIVTGANVQVCWEK-FARYF--------EV-----ELKEVKLEE--GY-------YVMNPVKAVE  197 (369)
Q Consensus       142 ~~~~~~~g~~~~-~~~Vi~s~~~h~s~~~-~~~~~--------G~-----~v~~v~~~~--~~-------~~~d~~~L~~  197 (369)
                      ..+....|.+.. +++|++.+++|..+.. ++...        +.     ++..+|.+.  ..       ...++++|++
T Consensus       144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~  223 (449)
T 2cjg_A          144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARA  223 (449)
T ss_dssp             HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHH
Confidence            111001121111 4688888876554322 22222        22     456666543  11       1367788999


Q ss_pred             HHh---hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcE
Q 017569          198 LVD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS  270 (369)
Q Consensus       198 ~i~---~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Ds  270 (369)
                      +++   +++++|+++..++++|.+.+    +++|.++|+++      ++++|+|++|.++..  ......+...-...|.
T Consensus       224 ~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~--~g~~~~~~~~~~~~di  295 (449)
T 2cjg_A          224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF------DALLIFDEVQTGCGL--TGTAWAYQQLDVAPDI  295 (449)
T ss_dssp             HHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSE
T ss_pred             HHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC------CcEEEEeccccCCCc--cCcceeecccCCCceE
Confidence            996   56778777777788997666    99999999999      999999999986432  1110011111124677


Q ss_pred             EEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHH
Q 017569          271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKK  350 (369)
Q Consensus       271 i~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~  350 (369)
                      ++++  |++  |  .|++++++ +.. ..+.  ..+........+.  +-+.....++.++|+.+..+++.+ +..++.+
T Consensus       296 ~t~s--K~l--~--iG~~~~~~-~~~-~~l~--~~~~~~~~~~~t~--~~n~~~~~aa~aal~~~~~~~~~~-~~~~~~~  362 (449)
T 2cjg_A          296 VAFG--KKT--Q--VCGVMAGR-RVD-EVAD--NVFAVPSRLNSTW--GGNLTDMVRARRILEVIEAEGLFE-RAVQHGK  362 (449)
T ss_dssp             EEEC--GGG--S--SEEEEECG-GGG-GSTT--CTTTSTTSSCCSS--SSCHHHHHHHHHHHHHHHHHTHHH-HHHHHHH
T ss_pred             EEec--Ccc--c--EEEEEECH-HHh-hhhh--hcccCCcccccCC--CCCHHHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence            7754  887  3  68888764 332 2110  0011111001111  112222334445555554443322 7788888


Q ss_pred             HHHHHHHhc
Q 017569          351 LSSFFVIHS  359 (369)
Q Consensus       351 ~l~~~L~~~  359 (369)
                      +++++|+++
T Consensus       363 ~l~~~L~~l  371 (449)
T 2cjg_A          363 YLRARLDEL  371 (449)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.58  E-value=1.2e-13  Score=134.63  Aligned_cols=193  Identities=10%  Similarity=-0.016  Sum_probs=120.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.........+.    ..++++.++++++ +.     ....+++||++|+..++..++...      
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~-~~-----~~v~~~~~Gsea~~~ai~~a~~~~------  133 (429)
T 3k28_A           70 ANDRVVEALKAVAERGTSFGAPTEI----ENKLAKLVIERVP-SI-----EIVRMVNSGTEATMSALRLARGYT------  133 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCSSCCHH----HHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHhhCcCcCCCCHH----HHHHHHHHHHhCC-CC-----CEEEEeCChHHHHHHHHHHHHHhh------
Confidence            4688888888887654332222233    3345556788775 22     248999999999999999887531      


Q ss_pred             cCCCCCCCeEEecCCCcc-hHHHHHhhhcceeEEEeccCCcccc-------------CHHHHHHHHhh---cCcEEEEee
Q 017569          148 QGKPYDKPNIVTGANVQV-CWEKFARYFEVELKEVKLEEGYYVM-------------NPVKAVELVDE---NTICVAAIL  210 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~-s~~~~~~~~G~~v~~v~~~~~~~~~-------------d~~~L~~~i~~---~~~~v~~~~  210 (369)
                       |    +.+|++.+++|. ....++...|..+..++.....+..             |+++|++++++   ++++|++..
T Consensus       134 -~----~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep  208 (429)
T 3k28_A          134 -G----RNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEP  208 (429)
T ss_dssp             -T----CCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred             -C----CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcC
Confidence             1    356776665543 3333333333332222221111111             89999999873   566777777


Q ss_pred             CCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       211 ~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      .++++|.+.+    +++|.++|+++      ++++|+|++|.++ .  .......+..-...|.++++  |.++++++.|
T Consensus       209 ~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG  277 (429)
T 3k28_A          209 VAGNMGVVPPQPGFLEGLREVTEQN------GALLIFDEVMTGF-R--VAYNCGQGYYGVTPDLTCLG--KVIGGGLPVG  277 (429)
T ss_dssp             SBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTT-T--SSTTHHHHHHTCCCSEEEEC--GGGGTTSCCE
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchHHHHhCCCCceehhh--hhhcCCCCeE
Confidence            7777788777    99999999999      9999999999864 2  11111111111235666654  8777778899


Q ss_pred             EEEEeC
Q 017569          287 WVVWRT  292 (369)
Q Consensus       287 ~l~~~~  292 (369)
                      +++.++
T Consensus       278 ~~~~~~  283 (429)
T 3k28_A          278 AYGGKA  283 (429)
T ss_dssp             EEEECH
T ss_pred             EEEEcH
Confidence            988754

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.58  E-value=5.2e-14  Score=138.61  Aligned_cols=263  Identities=10%  Similarity=-0.067  Sum_probs=157.4

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++...... ......+...+++++++++++.+.     ..+.+++||++|+..++.+++..+..+   
T Consensus        92 ~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~~L~e~la~~~~~~~-----~~v~~~~sGseA~~~Alk~a~~~~~~~---  162 (457)
T 3tfu_A           92 GHPALDQALTTQLRVMNHVM-FGGLTHEPAARLAKLLVDITPAGL-----DTVFFSDSGSVSVEVAAKMALQYWRGR---  162 (457)
T ss_dssp             TCHHHHHHHHHHHHHCSCCC-SSSEECHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred             CCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence            35788888888776533221 112233455577888999997654     248999999999999999988754321   


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhh--------------cceeEEEeccCC-ccccCHHHHHHHHh---hcCcEEEEe
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYF--------------EVELKEVKLEEG-YYVMNPVKAVELVD---ENTICVAAI  209 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~--------------G~~v~~v~~~~~-~~~~d~~~L~~~i~---~~~~~v~~~  209 (369)
                       |.+ .+.+|++.+++|......+..+              ..++..+|...+ ....|+++|+++++   +++++|++.
T Consensus       163 -g~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~e  240 (457)
T 3tfu_A          163 -GLP-GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVE  240 (457)
T ss_dssp             -TCT-TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             -CCC-CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence             211 2346777666554322222222              123445554321 12358999999998   567788888


Q ss_pred             e-CCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-C
Q 017569          210 L-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-A  283 (369)
Q Consensus       210 ~-~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~  283 (369)
                      . +++++|.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.+++  .|.+.++ +
T Consensus       241 p~~~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~gr--~G~~~a~~~~~~~pdiit~--sK~l~gG~~  310 (457)
T 3tfu_A          241 PVVQGAGGMRFHDPRYLHDLRDICRRY------EVLLIFDEIATGFGR--TGALFAADHAGVSPDIMCV--GKALTGGYL  310 (457)
T ss_dssp             SSEECTTTCEECCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--CGGGGTTSS
T ss_pred             CCCcCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCcc--ccchhHhHhcCCCceEEEE--ChhhhCCCc
Confidence            8 8899998755    99999999999      999999999986432  1111111111124677765  4887666 4


Q ss_pred             CeEEEEEeCCCCccccccc-ccC-ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcC
Q 017569          284 GVGWVVWRTKDDLPDELVF-HIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~-~~~-y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g  360 (369)
                      +.|+++.+++ .. +.+.. ... +..    ..+.  +-+....++..++|+.+..+++.+ +..++.++++++|+++.
T Consensus       311 ~lG~v~~~~~-i~-~~~~~~~~~~~~~----~~t~--~~n~~a~aaa~aaL~~~~~~~~~~-~~~~~~~~l~~~L~~l~  380 (457)
T 3tfu_A          311 SLAATLCTAD-VA-HTISAGAAGALMH----GPTF--MANPLACAVSVASVELLLGQDWRT-RITELAAGLTAGLDTAR  380 (457)
T ss_dssp             CCEEEEEEHH-HH-HHHHHSSSCSCCC----CCTT--TTCHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHGGGG
T ss_pred             ceEEEEEcHH-HH-HHhhccCCCceeE----ecCC--CcCHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHh
Confidence            7898888642 21 22210 011 010    0111  111222233335555554443332 77788899999998754

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.57  E-value=1.8e-13  Score=133.48  Aligned_cols=245  Identities=13%  Similarity=-0.060  Sum_probs=147.0

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+..... +   ....++..+++++++++++ ..     ..+.+++||++|+..++.+++...      
T Consensus        73 ~~~~v~~a~~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~-~~-----~~v~~~~sgseA~~~al~~ar~~~------  136 (434)
T 2epj_A           73 KHPRVLEAVEEALARGWL-Y---GAPGEAEVLLAEKILGYVK-RG-----GMIRFVNSGTEATMTAIRLARGYT------  136 (434)
T ss_dssp             TCHHHHHHHHHHHHTCSC-C---SSCCHHHHHHHHHHHHHHC-TT-----CEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCCC-C---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            467888888888765321 1   1234455667788888884 22     238999999999999999865321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHH-HHh-------------hhcc------eeEEEeccCCccccCHHHHHHHHhh---cCc
Q 017569          148 QGKPYDKPNIVTGANVQVCWEK-FAR-------------YFEV------ELKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~-~~~-------------~~G~------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (369)
                           .+++|++.+++|..+.. +..             ..|+      .+..+|.      .|+++|++++++   +++
T Consensus       137 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~  205 (434)
T 2epj_A          137 -----GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY------NDVEALERVFAEYGDRIA  205 (434)
T ss_dssp             -----CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET------TCHHHHHHHHHHHGGGEE
T ss_pred             -----CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC------CCHHHHHHHHHhCCCCEE
Confidence                 13567776666544222 111             1232      2444443      279999999974   566


Q ss_pred             EEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|+++..++++|.+.|    +++|.++|+++      ++++|+|++|+++ .  ..+....+..-...|.+++  .|+++
T Consensus       206 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~s~--sK~l~  274 (434)
T 2epj_A          206 GVIVEPVIANAGVIPPRREFLAALQRLSRES------GALLILDEVVTGF-R--LGLEGAQGYFNIEGDIIVL--GKIIG  274 (434)
T ss_dssp             EEEECSSBCSSSCBCCCHHHHHHHHHHHHHH------TCEEEEEETTTTT-T--SSTTHHHHHHTCCCSEEEE--EGGGG
T ss_pred             EEEEeCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEcchhce-e--CCcchhhHHhCCCCCeeee--cchhc
Confidence            7776666677998877    99999999999      9999999999864 2  1111111111124676654  59887


Q ss_pred             CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      ++...|+++.++ +.. +.+......    ....+  .+-+.....++.++|+.+..+++.+ +..++.+++++.|++.
T Consensus       275 ~G~~~G~v~~~~-~~~-~~l~~~~~~----~~~~t--~~~~~~~~aa~~a~l~~~~~~~~~~-~~~~~~~~l~~~L~~~  344 (434)
T 2epj_A          275 GGFPVGAVAGSR-EVM-SLLTPQGKV----FNAGT--FNAHPITMAAGLATLKALEEEPVYS-VSREAAKALEEAASEV  344 (434)
T ss_dssp             TTSSCEEEEECH-HHH-TTBTTTSSB----CCCCT--TTTCHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCcceeeeeecH-HHH-HhhccCCCc----ccCCC--CCcCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence            767789998864 222 222110000    00001  1112222344445555554433322 7778888888888764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.57  E-value=1.8e-14  Score=138.93  Aligned_cols=250  Identities=11%  Similarity=-0.040  Sum_probs=156.3

Q ss_pred             CccccccccCCChH-HHHHHHHHHh--cc--CCCCCCCCcch-----HHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           57 RLNLASFVTTWMEP-ECDKLVMASI--NK--NYVDMDEYPVT-----TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        57 ~~~l~~~~~~~~~~-~v~~~~~~~~--~~--n~~~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      .++|+.+.|.++.+ .+.+++.+..  ..  ....|....+.     .++++++.+++. ..|.+.+.  ...+++|+|+
T Consensus        24 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~--~~~i~~t~G~  100 (391)
T 3bwn_A           24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE--DRYIVVGTGS  100 (391)
T ss_dssp             CEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS--SSEEEEEEHH
T ss_pred             eeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC--CCeEEEeCCh
Confidence            35666666654433 3444432222  22  23445555566     899999888887 45765421  1358999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc
Q 017569          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKP----NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN  202 (369)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~----~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~  202 (369)
                      ++++.+++.++.++             ++    +|++++++|..+...++..|++++.++++.+...          .++
T Consensus       101 ~~al~~~~~~l~~~-------------Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~----------~~~  157 (391)
T 3bwn_A          101 TQLCQAAVHALSSL-------------ARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFD----------KKG  157 (391)
T ss_dssp             HHHHHHHHHHHHHT-------------SSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTCC----------CCS
T ss_pred             HHHHHHHHHHhcCC-------------CCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHcC----------CCC
Confidence            99999999888653             35    8999999999999999999999999998764322          257


Q ss_pred             CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-C
Q 017569          203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-V  281 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~  281 (369)
                      +++|++++|+||||.+.+  +|++  +++    +.++++++|++|...-.   .   .... ....+.+..+.+|.++ .
T Consensus       158 ~k~v~l~~p~NPtG~~~~--~l~~--~~~----~~~~~ii~De~y~~~~~---~---~l~~-~~~~~i~~~S~SK~~g~~  222 (391)
T 3bwn_A          158 PYIELVTSPNNPDGTIRE--TVVN--RPD----DDEAKVIHDFAYYWPHY---T---PITR-RQDHDIMLFTFSKITGHA  222 (391)
T ss_dssp             CEEEEEESSCTTTCCCCC--CCC-----------CCCEEEEECTTCSTTT---S---CCCC-CBCCSEEEEEHHHHHSCG
T ss_pred             CEEEEECCCCCCCchhHH--HHHH--Hhh----cCCCEEEEeCCCCCCCC---C---cccc-CCCCeEEEEechhhcCCC
Confidence            889999999999999975  4433  224    00499999999974111   0   1111 2245677888999874 4


Q ss_pred             CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc------------HhhHHHH--HhhH
Q 017569          282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG------------FEVIPSF--CCVD  347 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg------------~~G~~~~--~~~~  347 (369)
                      ....|++++.+++.. ..+.....+..         .+-+   .+.++++...+.            .+.++++  +..+
T Consensus       223 GlRiG~~~~~~~~l~-~~l~~~~~~~~---------~~~~---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (391)
T 3bwn_A          223 GSRIGWALVKDKEVA-KKMVEYIIVNS---------IGVS---KESQVRTAKILNVLKETCKSESESENFFKYGREMMKN  289 (391)
T ss_dssp             GGCEEEEEECCHHHH-HHHHHHHHHHH---------SSCC---HHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHH
T ss_pred             ccceEEEEecCHHHH-HHHHHHhcccc---------cCCC---HHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHH
Confidence            466799987443332 22211111100         1111   233333333332            2345555  6778


Q ss_pred             HHHHHHHHHHhcC
Q 017569          348 HKKLSSFFVIHSS  360 (369)
Q Consensus       348 ~a~~l~~~L~~~g  360 (369)
                      +.+++.+.|++.+
T Consensus       290 ~~~~l~~~L~~~~  302 (391)
T 3bwn_A          290 RWEKLREVVKESD  302 (391)
T ss_dssp             HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhCC
Confidence            8889999999874

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.57  E-value=9.8e-14  Score=136.18  Aligned_cols=246  Identities=13%  Similarity=-0.028  Sum_probs=143.7

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .++.+.+++.+.++... .+   ....+++.+++++++++++ +.     ..+.+++||++|+..++.+++...      
T Consensus        74 ~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~-~~-----~~v~~~~gg~eA~~~al~~ar~~~------  137 (453)
T 2cy8_A           74 GHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP-SI-----RKLRFTGSGTETTLLALRVARAFT------  137 (453)
T ss_dssp             TCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT-TC-----SEEEEESCHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            45788899888886532 11   2356788899999999885 32     248999999999999999865321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHH-hh----------hcce------eEEEeccCCccccCHHHHHHHHhh---cCcEEE
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFA-RY----------FEVE------LKEVKLEEGYYVMNPVKAVELVDE---NTICVA  207 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~-~~----------~G~~------v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~  207 (369)
                           .++.|++.+++|..+...+ ..          .|+.      +..+|.      .|+++|++++++   ++++|+
T Consensus       138 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi  206 (453)
T 2cy8_A          138 -----GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------DDIEGMREVFANHGSDIAAFI  206 (453)
T ss_dssp             -----CCCEEEEECC----------------------------CGGGEEEECT------TCHHHHHHHHHHHGGGEEEEE
T ss_pred             -----CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC------CCHHHHHHHHHhcCCCEEEEE
Confidence                 1346777777665433221 11          1331      222221      389999999974   566776


Q ss_pred             EeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCC
Q 017569          208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA  283 (369)
Q Consensus       208 ~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~  283 (369)
                      ++..++++|.+.|    +++|.++|+++      ++++++|++|+++ .  ..+....+..-...|.++  ..|+++++.
T Consensus       207 ~ep~~~~tG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~s--~sK~l~~G~  275 (453)
T 2cy8_A          207 AEPVGSHFGVTPVSDSFLREGAELARQY------GALFILDEVISGF-R--VGNHGMQALLDVQPDLTC--LAKASAGGL  275 (453)
T ss_dssp             ECSSEHHHHTEECCHHHHHHHHHHHHHT------TCEEEEECTTTTT-T--TCTTHHHHHHTCCCSEEE--EEGGGGTTS
T ss_pred             ECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecCcccc-c--cCchhhhHHhCCCCcEEE--EChhhhCCc
Confidence            6665677898777    99999999999      9999999999864 2  111111111111357665  459987777


Q ss_pred             CeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH-hcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       284 g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~-lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +.|+++.++ +.. +.+... . .+......+  .+-+.....++.++|+. + .+++.+ +..++.++++++|++.
T Consensus       276 ~~G~v~~~~-~~~-~~l~~~-~-~~~~~~~~t--~~~n~~~~aa~~aal~~~~-~~~~~~-~~~~~~~~l~~~L~~~  344 (453)
T 2cy8_A          276 PGGILGGRE-DVM-GVLSRG-S-DRKVLHQGT--FTGNPITAAAAIAAIDTIL-EDDVCA-KINDLGQFAREAMNHL  344 (453)
T ss_dssp             SCEEEEECH-HHH-TTSSSC-C------------CCCCHHHHHHHHHHHHHHH-HTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             ceEEEechH-HHH-HHhccc-c-CCCceeCCC--CCCCHHHHHHHHHHHHHHh-hhhHHH-HHHHHHHHHHHHHHHH
Confidence            889998864 221 221110 0 000000001  11222223344455555 4 343322 7777888888888764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.56  E-value=2.4e-13  Score=133.61  Aligned_cols=199  Identities=10%  Similarity=-0.036  Sum_probs=125.5

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.... +.......+...+++++++++++.+.    ...+.+|+||+||+..+++.++..       
T Consensus        81 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~alk~a~~~-------  148 (453)
T 4ffc_A           81 SHPAVAAAIADQATHFTH-TCFMVTPYEQYVQVAELLNALTPGDH----DKRTALFNSGAEAVENAIKVARLA-------  148 (453)
T ss_dssp             TCHHHHHHHHHHHHHCSC-CTTTTSCCHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred             CCHHHHHHHHHHHHhccc-cccCcCCCHHHHHHHHHHHHhCCCCC----CcEEEEeCcHHHHHHHHHHHHHHh-------
Confidence            367888888888765422 22222345566678888999987542    124899999999999999887653       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhhc--------------ceeEEEeccC---C--------ccccCHHHHHHHHhhc
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYFE--------------VELKEVKLEE---G--------YYVMNPVKAVELVDEN  202 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~G--------------~~v~~v~~~~---~--------~~~~d~~~L~~~i~~~  202 (369)
                      .|    +++|++.+++|..+...+..++              ..+..+|+..   +        .+..+++.|++++.++
T Consensus       149 ~g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~  224 (453)
T 4ffc_A          149 TG----RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ  224 (453)
T ss_dssp             HC----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred             cC----CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC
Confidence            11    4577777766553332222221              1456666641   1        1222356677777655


Q ss_pred             CcEEEEeeCCCCcc-cCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCcc
Q 017569          203 TICVAAILGSTLTG-EFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK  277 (369)
Q Consensus       203 ~~~v~~~~~~~~tG-~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK  277 (369)
                      +..++++.|.+++| .+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.++++  |
T Consensus       225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~a~~~~~~~pdi~t~s--K  294 (453)
T 4ffc_A          225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN------GVVFIADEVQTGFAR--TGAWFASEHEGIVPDIVTMA--K  294 (453)
T ss_dssp             GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--G
T ss_pred             CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--ccccchhhhcCCCcchHhhh--h
Confidence            55666666666665 4444    99999999999      999999999986432  11111111111245777754  8


Q ss_pred             CCCCCCCeEEEEEeC
Q 017569          278 YGLVYAGVGWVVWRT  292 (369)
Q Consensus       278 ~l~~p~g~g~l~~~~  292 (369)
                      .++++++.|+++.++
T Consensus       295 ~~~~G~~~G~~~~~~  309 (453)
T 4ffc_A          295 GIAGGMPLSAVTGRA  309 (453)
T ss_dssp             GGGTTSSCEEEEEEH
T ss_pred             hhcCCcCeEEEEECH
Confidence            877778899998754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.54  E-value=1e-12  Score=129.08  Aligned_cols=198  Identities=14%  Similarity=0.018  Sum_probs=122.5

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.... +.......+...+++++++++++.+.    .....+|+||+||+..+++.++..       
T Consensus        78 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~----~~~v~~~~sGseA~~~Alk~a~~~-------  145 (451)
T 3oks_A           78 SAPKVVEAVRSQVGDFTH-TCFMVTPYEGYVAVCEQLNRLTPVRG----DKRSALFNSGSEAVENAVKIARSH-------  145 (451)
T ss_dssp             TCHHHHHHHHHHHTTCSC-CTTTTSCCHHHHHHHHHHHHHSSCCS----SEEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred             CCHHHHHHHHHHHHhccc-ccCCccCCHHHHHHHHHHHHhCCcCC----CCEEEEeCcHHHHHHHHHHHHHHh-------
Confidence            368888988888865422 22222345566678888999987432    124899999999999999888753       


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHHhhh--------------cceeEEEeccCCcc-------------ccCHHHHHHHHh
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFARYF--------------EVELKEVKLEEGYY-------------VMNPVKAVELVD  200 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~~~~--------------G~~v~~v~~~~~~~-------------~~d~~~L~~~i~  200 (369)
                      .|    +.+|++.+++|..+...+..+              ..++..+|+... +             .-+++.+++.++
T Consensus       146 ~g----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~  220 (451)
T 3oks_A          146 TH----KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP-FRDAEFGKELATDGELAAKRAITVID  220 (451)
T ss_dssp             HC----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCH-HHHGGGCTTTTTCHHHHHHHHHHHHH
T ss_pred             cC----CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcc-ccccccccccchhhHHHHHHHHHHHH
Confidence            11    457777766655333222222              114666766421 1             113455555554


Q ss_pred             ----hcCcEEEEeeCCCCc-ccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEE
Q 017569          201 ----ENTICVAAILGSTLT-GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSI  271 (369)
Q Consensus       201 ----~~~~~v~~~~~~~~t-G~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi  271 (369)
                          +++..++++.|.+++ |.+.+    +++|.++|+++      ++++|+|++|.++..  .......+..-...|.+
T Consensus       221 ~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~~pdi~  292 (451)
T 3oks_A          221 KQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN------DVVFIADEVQTGFAR--TGAMFACEHEGIDPDLI  292 (451)
T ss_dssp             HHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEE
T ss_pred             hhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--cccchhhhhcCCCCCee
Confidence                244444455555554 55544    99999999999      999999999986432  11111111111246777


Q ss_pred             EEcCccCCCCCCCeEEEEEeC
Q 017569          272 NVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      +++  |.++++++.|+++.++
T Consensus       293 t~s--K~l~~G~~iG~v~~~~  311 (451)
T 3oks_A          293 VTA--KGIAGGLPLSAVTGRA  311 (451)
T ss_dssp             EEC--GGGGTTSSCEEEEEEH
T ss_pred             eeh--hhhhCCcceEEEEECH
Confidence            654  8887778899988754

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.54  E-value=1.1e-12  Score=127.69  Aligned_cols=243  Identities=12%  Similarity=0.031  Sum_probs=137.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++......  ++  .+...++.++++++++ +.     ...++++||++|+..++..++...      
T Consensus        70 ~~p~v~~A~~~~~~~~~~~~--~~--~~~~~~la~~l~~~~~-~~-----~~v~~~~sGsea~~~al~~a~~~~------  133 (429)
T 4e77_A           70 NHPAIRQAVIEAVERGLSFG--AP--TEMEVKMAQLVTDLVP-TM-----DMVRMVNSGTEATMSAIRLARGYT------  133 (429)
T ss_dssp             TCHHHHHHHHHHHTTCSCCS--SC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCcccC--CC--CHHHHHHHHHHHhhCC-CC-----CEEEEeCcHHHHHHHHHHHHHHhh------
Confidence            36888999988886643221  22  2344566777888886 32     248999999999999999876421      


Q ss_pred             cCCCCCCCeEEecCCCcch-HHHHHhhhcce-------------------eEEEeccCCccccCHHHHHHHHhh---cCc
Q 017569          148 QGKPYDKPNIVTGANVQVC-WEKFARYFEVE-------------------LKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s-~~~~~~~~G~~-------------------v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (369)
                       |    +..|++.++.|.. ...++...|..                   +..++.      -|+++|++++++   +++
T Consensus       134 -~----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~  202 (429)
T 4e77_A          134 -G----RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY------NDLASVRQAFEQYPQEVA  202 (429)
T ss_dssp             -C----CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT------TCHHHHHHHHHHSTTTEE
T ss_pred             -C----CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC------CCHHHHHHHHHhcCCCEE
Confidence             1    3566666555443 32222111111                   111111      179999999974   445


Q ss_pred             EEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|+++..++.+|.+.+    +++|.++|+++      ++++|+|++|.++ .  .......+..-...|.+++  .|.++
T Consensus       203 ~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~-r--~g~~~~~~~~~~~pdi~t~--sK~~~  271 (429)
T 4e77_A          203 CIIVEPVAGNMNCIPPLPEFLPGLRALCDEF------GALLIIDEVMTGF-R--VALAGAQDYYHVIPDLTCL--GKIIG  271 (429)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEEETTTBT-T--TBTTCHHHHTTCCCSEEEE--EGGGG
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCc-c--cCcchHHHhcCCCCCeeee--ccccc
Confidence            5555544455566766    99999999999      9999999999865 2  1111111111113466654  48887


Q ss_pred             CCCCeEEEEEeCCCCccccccccc-CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ++.+.|+++.++ +.. +.+.... .+.++   .    .+-+.....++.++|+.+..+++.+ +..++.++++++|++
T Consensus       272 ~G~~~G~~~~~~-~~~-~~l~~~~~~~~~~---t----~~~~~~~~aaa~aal~~~~~~~~~~-~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          272 GGMPVGAFGGRR-EVM-NALAPTGPVYQAG---T----LSGNPIAMAAGFACLTEISQVGVYE-TLTELTDSLATGLRH  340 (429)
T ss_dssp             TTSCCEEEEECH-HHH-TTBTTTSSBCC-----C----CCCCHHHHHHHHHHHHHHTSTTHHH-HHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECH-HHH-HHhccCCCccccC---C----CCCCHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHH
Confidence            778889887743 221 1211100 01110   1    1122223344445566554444332 666777777777765

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.50  E-value=1.8e-12  Score=126.04  Aligned_cols=243  Identities=12%  Similarity=-0.051  Sum_probs=143.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.++.... +   ....+++.++.++++++++ +.     ....+++||++|+..++.+++...      
T Consensus        69 ~~p~v~~a~~~~~~~~~~-~---~~~~~~~~~l~~~l~~~~~-~~-----~~v~~~~~g~ea~~~al~~ar~~~------  132 (424)
T 2e7u_A           69 AHPKVLARVRETLERGLT-F---GAPSPLEVALAKKVKRAYP-FV-----DLVRFVNSGTEATMSALRLARGYT------  132 (424)
T ss_dssp             TCHHHHHHHHHHHHTCSC-C---SSCCHHHHHHHHHHHHHCT-TC-----CEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHhCCC-C---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHhh------
Confidence            467888888888865321 1   1234556677788888885 32     248999999999999998765321      


Q ss_pred             cCCCCCCCeEEecCCCcchHHHHH-hh-------------hcc------eeEEEeccCCccccCHHHHHHHHhh---cCc
Q 017569          148 QGKPYDKPNIVTGANVQVCWEKFA-RY-------------FEV------ELKEVKLEEGYYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~h~s~~~~~-~~-------------~G~------~v~~v~~~~~~~~~d~~~L~~~i~~---~~~  204 (369)
                           .++.|++.+++|..+...+ ..             .|+      .+..+|.      .|+++|++++++   +++
T Consensus       133 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~  201 (424)
T 2e7u_A          133 -----GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY------NDPEGLREVLKRRGEEIA  201 (424)
T ss_dssp             -----CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT------TCHHHHHHHHHHHGGGEE
T ss_pred             -----CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC------CCHHHHHHHHHhCCCCEE
Confidence                 1356777776655433221 11             122      2333332      378999999973   455


Q ss_pred             EEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC
Q 017569          205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL  280 (369)
Q Consensus       205 ~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~  280 (369)
                      +|+++..++++|.+.|    +++|.++ +++      ++++++|++|+++ .  ..+....+..-...|.++  ..|+++
T Consensus       202 ~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~~~di~s--~sK~l~  269 (424)
T 2e7u_A          202 AIIFEPVVGNAGVLVPTEDFLKALHEA-KAY------GVLLIADEVMTGF-R--LAFGGATELLGLKPDLVT--LGKILG  269 (424)
T ss_dssp             EEEECSSBCTTSCBCCCHHHHHHHHHG-GGG------TCEEEEECTTTTT-T--SSTTHHHHHHTCCCSEEE--ECGGGG
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc------CCEEEEecCcccc-c--cchhHHHHHhCCCcchhh--hhhhhh
Confidence            5555444444898777    9999999 999      9999999999964 2  111111111111356664  569987


Q ss_pred             CCCCeEEEEEeCCCCcccccccccC-ccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHHHhhHHHHHHHHHHHh
Q 017569          281 VYAGVGWVVWRTKDDLPDELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       281 ~p~g~g~l~~~~~~~~~~~~~~~~~-y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ++.+.|+++.++ +.. +.+..... +.+   .+    .+-+.....++.++|+.+.. +.+.+ +..++.++++++|++
T Consensus       270 ~G~~~G~~~~~~-~~~-~~~~~~~~~~~~---~t----~~~~~~~~aaa~aal~~~~~~~~~~~-~~~~~~~~l~~~L~~  339 (424)
T 2e7u_A          270 GGLPAAAYAGRR-EIM-EKVAPLGPVYQA---GT----LSGNPLAMAAGLATLELLEENPGYYA-YLEDLGARLEAGLKE  339 (424)
T ss_dssp             TTSSCEEEEECH-HHH-TTBTTTSSBCCC---CT----TCSCHHHHHHHHHHHHHHHHCTHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEcH-HHH-hhhcccCCcccC---CC----CCCCHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHH
Confidence            777889998864 222 22211000 110   01    11122223344455555433 22222 778888888888877


Q ss_pred             c
Q 017569          359 S  359 (369)
Q Consensus       359 ~  359 (369)
                      .
T Consensus       340 ~  340 (424)
T 2e7u_A          340 V  340 (424)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.41  E-value=4.3e-13  Score=130.84  Aligned_cols=194  Identities=12%  Similarity=0.092  Sum_probs=135.6

Q ss_pred             ccccccccCCCh-HHHHHHHHHHhc-cCCC--CCCCCc-c---hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           58 LNLASFVTTWME-PECDKLVMASIN-KNYV--DMDEYP-V---TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        58 ~~l~~~~~~~~~-~~v~~~~~~~~~-~n~~--~~~~~~-~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      ++|+.+.+...+ +.+.+++.+++. .+..  .|.... +   ..+|++++.+++.+..+...+   ...+++|+|++++
T Consensus        59 i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~---~~~iv~t~G~~~a  135 (427)
T 2hox_A           59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK---DRYIVFGVGVTQL  135 (427)
T ss_dssp             EECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT---TCEEEEESHHHHH
T ss_pred             EEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCC---CCEEEEeCCHHHH
Confidence            445555554433 456777777763 2222  244444 5   789999999888876553321   1358999999999


Q ss_pred             HHHHHHHH--------HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh
Q 017569          130 IMLAGLAF--------KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE  201 (369)
Q Consensus       130 ~~~al~~~--------~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~  201 (369)
                      +.+++.++        .+             .++.|+++.++|..+...++..|++++.       +.+|+++|++++++
T Consensus       136 l~~~~~~l~~~~~~~~~~-------------~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~-------~~~d~~~l~~~~~~  195 (427)
T 2hox_A          136 IHGLVISLSPNMTATPDA-------------PESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNP  195 (427)
T ss_dssp             HHHHHHHHSCCTTTCTTS-------------CCEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCG
T ss_pred             HHHHHHHHhhccccccCC-------------CCCEEEEeCCCcccHHHHHHHcCCeeee-------ecCCHHHHHHhhcC
Confidence            99988887        33             1468999999999999999999988752       45678888888888


Q ss_pred             cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-
Q 017569          202 NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-  280 (369)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-  280 (369)
                      ++++|++++|+||||.+.+ +    ++  .      ++..++|.++-.   ++..   ...+. ...+.+..+.+|.++ 
T Consensus       196 ~~k~v~l~~p~NPtG~~~~-~----~l--~------~~~~i~d~~~~~---~~~s---~~~~~-~~~~i~~~S~SK~~g~  255 (427)
T 2hox_A          196 EQYIEMVTSPNNPEGLLRH-A----VI--K------GCKSIYDMVYYW---PHYT---PIKYK-ADEDILLFTMSKFTGH  255 (427)
T ss_dssp             GGEEEEEESSCTTTCCCCC-C----SS--T------TCEEEEECTTCS---TTTS---CCCSC-BCCSEEEEEHHHHTSC
T ss_pred             CceEEEEcCCCCCcccccH-H----HH--c------CCCEEEeecccC---CCCC---ccccC-CCceEEEEeChhcCCC
Confidence            8999999999999999988 4    23  2      456788877632   1110   01111 356888999999875 


Q ss_pred             CCCCeEEEEEeCCC
Q 017569          281 VYAGVGWVVWRTKD  294 (369)
Q Consensus       281 ~p~g~g~l~~~~~~  294 (369)
                      .....|++++++++
T Consensus       256 ~G~RiG~~~~~~~~  269 (427)
T 2hox_A          256 SGSRFGWALIKDES  269 (427)
T ss_dssp             GGGCCEEEEECCHH
T ss_pred             CCceEEEEEECCHH
Confidence            33568999986543

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.39  E-value=1.1e-11  Score=122.48  Aligned_cols=256  Identities=12%  Similarity=-0.045  Sum_probs=145.8

Q ss_pred             ChHHHHHHHHHHhcc----CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ  143 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~  143 (369)
                      .+|.+.+++.+.+..    +...+.. ....++++++.+.++++++.+.     ..+.+++||+|||..++.+++..+..
T Consensus        80 ~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~-----~~v~f~~sGseA~~~Aik~a~~~~~~  153 (472)
T 1ohv_A           80 SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGM-----SQLITMACGSCSNENAFKTIFMWYRS  153 (472)
T ss_dssp             TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCc-----CEEEEeCCchhHHHHHHHHHHHHhhh
Confidence            367788888776532    1111111 2345677777776777664332     24899999999999999998754321


Q ss_pred             H-HH-------------hcCCCC-CCCeEEecCCCcch-HHHHHhhhcc--------e---eEEEeccCCcc--------
Q 017569          144 K-RK-------------EQGKPY-DKPNIVTGANVQVC-WEKFARYFEV--------E---LKEVKLEEGYY--------  188 (369)
Q Consensus       144 ~-~~-------------~~g~~~-~~~~Vi~s~~~h~s-~~~~~~~~G~--------~---v~~v~~~~~~~--------  188 (369)
                      + +.             ..+.+. .+++||+.+..|.. ...++...|.        .   +..+++....+        
T Consensus       154 ~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  233 (472)
T 1ohv_A          154 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKE  233 (472)
T ss_dssp             HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHH
T ss_pred             hccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCcccccccc
Confidence            1 10             000011 13678877765443 3333333332        1   11233321000        


Q ss_pred             -----ccCHHHHHHHHhh------cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeeccccccccc
Q 017569          189 -----VMNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP  253 (369)
Q Consensus       189 -----~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~  253 (369)
                           ..|+++|+++|++      ++++|++...++++|.+.|    +++|.++|+++      |+++|+|++|.++.. 
T Consensus       234 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~-  306 (472)
T 1ohv_A          234 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH------GCAFLVDEVQTGGGS-  306 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT-
T ss_pred             chhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh------CCEEEEeCcccCCCC-
Confidence                 2378999999987      7888888877888998877    99999999999      999999999986322 


Q ss_pred             ccCCCccccccCC----CCcEEEEcCccC-CCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHH
Q 017569          254 FLYPDLEWDFRLP----LVKSINVSGHKY-GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ  328 (369)
Q Consensus       254 ~~~~~~~~~~~~~----~~Dsi~~~~hK~-l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~  328 (369)
                       . .. .+.+...    .+|.++++  |. +.    .|+++ + ++. . .+  ...+..     .|.  +-+.....++
T Consensus       307 -~-g~-~~~~~~~gv~~~~Di~t~s--K~~l~----GG~~~-~-~~~-~-~~--~~~~~~-----~T~--~~~~~~~aaa  364 (472)
T 1ohv_A          307 -T-GK-FWAHEHWGLDDPADVMTFS--KKMMT----GGFFH-K-EEF-R-PN--APYRIF-----NTW--LGDPSKNLLL  364 (472)
T ss_dssp             -T-SS-SSGGGGGCCSSCCSEEEEC--GGGSS----EEEEE-C-GGG-S-CS--SSSSSC-----CSS--SSCHHHHHHH
T ss_pred             -C-CC-chhccccCCCCCCCEEEEc--ccccc----CCccC-c-hhh-c-cc--cccccc-----Ccc--CccHHHHHHH
Confidence             1 11 0111111    27888766  88 43    25554 3 221 1 10  010000     011  1112223344


Q ss_pred             HHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          329 YYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       329 ~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      .++|+.+..+++.+ +..++.++|+++|+++
T Consensus       365 ~aal~~~~~~~~~~-~~~~~~~~l~~~L~~l  394 (472)
T 1ohv_A          365 AEVINIIKREDLLS-NAAHAGKVLLTGLLDL  394 (472)
T ss_dssp             HHHHHHHHHTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHH-HHHHHHHHHHHHHHHH
Confidence            46666664444322 7778888998888775

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.92  E-value=4.3e-13  Score=131.96  Aligned_cols=247  Identities=11%  Similarity=-0.093  Sum_probs=142.1

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhC-CCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .+|.+.+++.+.+......    ....+.+.++.+.|+++++ .+       ...++++|+||+..+++.++...     
T Consensus       117 ~~p~V~~Av~~q~~~~~~~----~~~~~~~~~Lae~L~~~~p~~~-------~v~~~nSGseA~~~Aik~ar~~t-----  180 (465)
T 2yky_A          117 SHPVIRAAVERALAVGLNL----STQTENEALFAEAVCDRFPSID-------LVRFTNSGTEANLMALATATAIT-----  180 (465)
Confidence            3577888887777553211    1123344456666888774 33       27899999999999999876421     


Q ss_pred             hcCCCCCCCeEEecCCCcchHHH-HH---hhhcceeEEEeccCCccccCHHHHHHHHh---hcCcEEEEeeCCCCcccCC
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEK-FA---RYFEVELKEVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFE  219 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~-~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~~  219 (369)
                            .+++||+.+..|..... ++   ...|+....+++.   + -|+++|+++++   +++++|++....+++|.+.
T Consensus       181 ------gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~---~-~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~  250 (465)
T 2yky_A          181 ------GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV---Y-NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVP  250 (465)
Confidence                  13567776665543222 22   1223311122221   1 27889999998   5778888776566689776


Q ss_pred             C----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       220 ~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |    +++|.++|+++      ++++++|++|. +-.   .+...++..-...|.++  ..|+++++++.|+++.++. .
T Consensus       251 ~~~~~l~~l~~l~~~~------g~llI~DEv~~-~r~---g~~~a~~~~gv~pDi~t--~sK~lg~G~piG~v~~~~~-i  317 (465)
T 2yky_A          251 AERAFLDLLRAEASRC------GALLIFDEVMT-SRL---SGGGAQEMLGISADLTT--LGKYIGGGMSFGAFGGRRD-L  317 (465)
Confidence            5    99999999999      99999999998 522   11001111111356554  5699888777898887643 3


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      . +.+...  ..+......+..+.  .....+..++|+.+..+++.+ +..++.++++++|++.
T Consensus       318 ~-~~l~~~--~~g~~~~~~T~~~n--pla~aAa~aaL~~l~~~~~~~-~~~~~~~~l~~~L~~~  375 (465)
T 2yky_A          318 M-ERFDPA--RDGAFAHAGTFNNN--ILTMSAGHAALTQIYTRQAAS-DLSASGDRFRANLNRI  375 (465)
Confidence            2 222110  00000001111111  111233335566665544322 7777888888888764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.17  E-value=2.5e-09  Score=104.57  Aligned_cols=247  Identities=15%  Similarity=0.017  Sum_probs=141.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.++.........    .++.++.+.+++++...      ....++++|+||+..|++.++...     
T Consensus       103 H~hp~v~~Av~~q~~~~~~~~~~~----~~~~~lae~l~~~~p~~------~~v~f~~SGsEA~e~AiklAr~~t-----  167 (454)
T 4ao9_A          103 HSAPEIRDAVIEAMQGGINLTGHN----LLEGRLARLICERFPQI------EQLRFTNSGTEANLMALTAALHFT-----  167 (454)
T ss_dssp             SCCHHHHHHHHHHHHTCSCCCSEE----SSHHHHHHHHHHHSTTC------SEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHhcCCCccCCc----HHHHHHHHHHHHhCCCC------CEEEEeCchHHHHHHHHHHHHhcc-----
Confidence            346888999888886543222222    23345556677776432      248899999999999999988752     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhh---cceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCC
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE  219 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~  219 (369)
                        |    +.+|+.-+ ..|-.........   +.....+.+..+    |++.+++.+++   +..+|++.-.....|.+.
T Consensus       168 --g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~  237 (454)
T 4ao9_A          168 --G----RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN----DAQTARAQIERHGPEIAVVLVEPMQGASGCIP  237 (454)
T ss_dssp             --T----CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEE
T ss_pred             --c----CCeEEEEeCCcCCccccccccccCccCCCCcccCCCc----hHHHHHHHHhhcCCceEEEEeccccCCCCccC
Confidence              1    45666544 3443221111110   111122222222    68889988875   456677666566667775


Q ss_pred             C----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       220 ~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |    +++|.++|+++      |+++|+|+++.|-.-.+...   ..+.+ ..|.++  ..|.+++....|.++.+++ .
T Consensus       238 p~~~fL~~lr~lc~~~------g~lLI~DEV~tGR~G~~~a~---e~~gv-~PDi~t--~gK~lggG~Piga~~~~~e-i  304 (454)
T 4ao9_A          238 GQPDFLQALRESATQV------GALLVFDEVMTSRLAPHGLA---NKLGI-RSDLTT--LGKYIGGGMSFGAFGGRAD-V  304 (454)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEECTTGGGGSTTCHH---HHHTC-CCSEEE--EEGGGGTTSSCEEEEECHH-H
T ss_pred             CchhhHHHHHHHHhhc------CCEEEEECCCcCCCccccch---hccCC-CCcEEE--eccccCCCCcceeeeeHHH-H
Confidence            5    99999999999      99999999987521111100   01112 357777  4577777777888887642 2


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      . +.+.......   ....|+.|.  ....++..++|+.+..+++.+ +..++.++|+++|++
T Consensus       305 ~-~~~~~~~~~~---~h~~T~~gn--Pla~AAala~L~~l~~~~~~~-~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          305 M-ALFDPRTGPL---AHSGTFNNN--VMTMAAGYAGLTKLFTPEAAG-ALAERGEALRARLNA  360 (454)
T ss_dssp             H-GGGCTTTCSC---CCCCTTTTC--HHHHHHHHHHHHHTSCHHHHH-HHHHHHHHHHHHHHH
T ss_pred             H-HHHhhccCCc---cccCCCCCC--HHHHHHHHHHHHHHhccChhH-HHHHHHHHHHHHHHH
Confidence            2 2221111000   001122121  122344456677776555433 667778888888765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.94  E-value=8.6e-08  Score=94.31  Aligned_cols=268  Identities=12%  Similarity=-0.091  Sum_probs=146.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-......+....+.+.++.+.|.++...+.     ....++++|+||+..|++.++..+..   
T Consensus        83 h~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGsEA~e~AiKlAr~~~~~---  154 (473)
T 4e3q_A           83 FDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-----GRVFYTNSGSEANDTMVKMLWFLHAA---  154 (473)
T ss_dssp             SCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-----CEEEEESSHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-----cEEEEeCchHHHHHHHHHHHHHHHHh---
Confidence            4468888888887765432222222233444467777888876543     24889999999999999998875432   


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc--------c---eeEEEeccC-----Ccccc-------CHHHHHHHHhh-
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE--------V---ELKEVKLEE-----GYYVM-------NPVKAVELVDE-  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G--------~---~v~~v~~~~-----~~~~~-------d~~~L~~~i~~-  201 (369)
                       .|.. .+.+||.-.. .|-....++...|        .   ....++...     +....       ..+++++.|.+ 
T Consensus       155 -~g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  232 (473)
T 4e3q_A          155 -EGKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE  232 (473)
T ss_dssp             -TTCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh
Confidence             2212 2345665444 4443333332222        1   133444321     00111       13455555543 


Q ss_pred             ---cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEc
Q 017569          202 ---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS  274 (369)
Q Consensus       202 ---~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~  274 (369)
                         +..+|++--.....|.+.|    +++|.++|+++      |+++|+|+++.|+-.  ...-..+...-...|.++  
T Consensus       233 ~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~------gilLI~DEV~tGfGR--tG~~fa~e~~gv~PDi~t--  302 (473)
T 4e3q_A          233 GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY------DIPVISDEVICGFGR--TGNTWGCVTYDFTPDAII--  302 (473)
T ss_dssp             CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCCEEEECTTTSSST--TSSSCHHHHTTCCCSEEE--
T ss_pred             CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc------ceEEeccCccccCCc--ccchhHHHhcCCCCChHH--
Confidence               3456666655555666532    99999999999      999999999887532  111111111112468777  


Q ss_pred             CccCCCCC-CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHH
Q 017569          275 GHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSS  353 (369)
Q Consensus       275 ~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~  353 (369)
                      ..|.+.+. ...|.++++++ .. +.+.......+...-..|..|.  ....++..++|+.+..+++.+ +..++.++|+
T Consensus       303 ~~K~l~gG~~Pl~av~~~~~-i~-~~~~~~~~~~~~~~hg~T~~Gn--pla~Aaala~L~~i~~~~l~~-~~~~~g~~l~  377 (473)
T 4e3q_A          303 SSKNLTAGFFPMGAVILGPE-LS-KRLETAIEAIEEFPHGFTASGH--PVGCAIALKAIDVVMNEGLAE-NVRRLAPRFE  377 (473)
T ss_dssp             ECGGGGTTSSCCEEEEECHH-HH-HHHHHHHHHHSCCCCCCTTTTC--HHHHHHHHHHHHHHHHSSHHH-HHHHHHHHHH
T ss_pred             hcccccCCCCCcccccccHH-HH-HHhccccccccccccCCCCCCC--cchhhhhhhhhhhhccccHHH-HHHHHHHHHH
Confidence            45766555 67788887653 21 2221111100100001111121  122344446666776666654 6667889999


Q ss_pred             HHHHhc
Q 017569          354 FFVIHS  359 (369)
Q Consensus       354 ~~L~~~  359 (369)
                      ++|+++
T Consensus       378 ~~L~~l  383 (473)
T 4e3q_A          378 ERLKHI  383 (473)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.84  E-value=1.3e-06  Score=85.60  Aligned_cols=254  Identities=12%  Similarity=-0.061  Sum_probs=140.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.+|.+.+++.+.++...+.... ....+.+.++.+.|.+++..+.    .....++++|+||+..|++.++...     
T Consensus        80 h~~p~v~~Ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~----~~~v~f~~sGsEA~e~AlklAr~~t-----  149 (456)
T 4atq_A           80 ASDPAVVAAVQEAAAHFTHTCFM-VTPYEGYVAVTEQLNRLTPGDH----AKRTVLFNSGAEAVENAVKVARLAT-----  149 (456)
T ss_dssp             TTCHHHHHHHHHHHHHCSCCTTT-TSCCHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHhhccCcccC-ccCcHHHHHHHHHHHHhCCCCC----CcEEEEeCChHHHHHHHHHHHhhhh-----
Confidence            34688888888776553222111 1112233356667888875432    1237889999999999999997742     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhc-------------ceeEEEeccC-----CccccCHHHHHHHHh-------
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEE-----GYYVMNPVKAVELVD-------  200 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~L~~~i~-------  200 (369)
                        |    +.+|+.-.. .|-....++...|             -++..+|...     ....-+.+.+++.++       
T Consensus       150 --~----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  223 (456)
T 4atq_A          150 --G----RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIG  223 (456)
T ss_dssp             --C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTC
T ss_pred             --c----CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhc
Confidence              1    456665544 4433322222211             1355666531     101123344433332       


Q ss_pred             h-cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcC
Q 017569          201 E-NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (369)
Q Consensus       201 ~-~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~  275 (369)
                      . +..+|++--.....|.+.|    +++|.++|+++      |+++|+|+++.|+..  ...-..+...-...|.++++ 
T Consensus       224 ~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~------gillI~DEV~tG~GR--tG~~~a~e~~gv~PDivt~g-  294 (456)
T 4atq_A          224 GDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK------GIVFIADEVQSGFCR--TGEWFAVDHEGVVPDIITMA-  294 (456)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTCCCSEEEEC-
T ss_pred             CCceEEEEeccccCCCCccccchhhhHHHHHHHhhc------CCceEecccccccCC--ccccccccccCCCCchhhhh-
Confidence            2 3556666655555566533    99999999999      999999999887433  11111111111146888864 


Q ss_pred             ccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHH
Q 017569          276 HKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFF  355 (369)
Q Consensus       276 hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~  355 (369)
                       |.+++....|.++.+++ .. ..+  .+...+     .|..|..  ...++..++|+.+..+++.+ +..++.++|.++
T Consensus       295 -K~lggg~P~~av~~~~~-i~-~~~--~~~~~~-----~Tf~gnp--la~aaala~L~~i~~~~l~~-~~~~~g~~l~~~  361 (456)
T 4atq_A          295 -KGIAGGLPLSAITGRAD-LL-DAV--HPGGLG-----GTYGGNP--VACAAALAAIDTMEQHDLNG-RARHIEELALGK  361 (456)
T ss_dssp             -GGGGTTSSCEEEEEEHH-HH-TTS--CTTSSC-----CSSSSCH--HHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHH
T ss_pred             -hcccCcCCceeeEecHH-HH-hcc--cccCCC-----CCCCCCh--HHHHhhHHHHHHHhhccHHH-HHHHHHHHHHHH
Confidence             66666677788888753 11 111  111111     1221221  22445556777777776644 666677777777


Q ss_pred             HHh
Q 017569          356 VIH  358 (369)
Q Consensus       356 L~~  358 (369)
                      |++
T Consensus       362 L~~  364 (456)
T 4atq_A          362 LRE  364 (456)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.07  E-value=4.2e-05  Score=80.19  Aligned_cols=205  Identities=10%  Similarity=-0.089  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 017569           69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ  148 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~  148 (369)
                      +|.+.+++.+.++.-.+.. ......+-..++.+.|+++++.+.    .....++++|+|||-.|+..++..+..+   .
T Consensus       399 ~p~i~~Ai~~Q~~~l~h~~-~~~~~~~~~~~Lae~L~~~~p~~~----l~~vff~~SGSeA~E~AlK~A~r~~~~~---~  470 (831)
T 4a0g_A          399 QAELAREMGYTAARFGHVM-FPENVYEPALKCAELLLDGVGKGW----ASRVYFSDNGSTAIEIALKMAFRKFCVD---H  470 (831)
T ss_dssp             HHHHHHHHHHHHHHHSSCC-CTTEECHHHHHHHHHHHHTTTTTT----CCEEEEESSHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CHHHHHHHHHHHhhccccc-ccccCCHHHHHHHHHHHHhCCCCC----CCEEEECCChhHHHHHHHHHHHHHHHhh---c
Confidence            5677777776665432221 111122233356666888876331    1248999999999999999984432211   1


Q ss_pred             CCCC-------CCCeEEecC-CCcchHHHHHhhhcce----------------------------eEEEeccCCccc---
Q 017569          149 GKPY-------DKPNIVTGA-NVQVCWEKFARYFEVE----------------------------LKEVKLEEGYYV---  189 (369)
Q Consensus       149 g~~~-------~~~~Vi~s~-~~h~s~~~~~~~~G~~----------------------------v~~v~~~~~~~~---  189 (369)
                      |...       .+.+||.-. ..|-....++...|..                            +..+++... ++   
T Consensus       471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~-~~~~~  549 (831)
T 4a0g_A          471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES-FSEIA  549 (831)
T ss_dssp             TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTT-SCCCC
T ss_pred             CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcc-ccccc
Confidence            2110       234566544 4555555555443311                            011222110 00   


Q ss_pred             ------cC------------------HHHHHHHHhh--------cCcEEEEeeC-CCCcccCCC----HHHHHHHHHHhh
Q 017569          190 ------MN------------------PVKAVELVDE--------NTICVAAILG-STLTGEFED----VKLLHDLLTKKN  232 (369)
Q Consensus       190 ------~d------------------~~~L~~~i~~--------~~~~v~~~~~-~~~tG~~~~----l~~I~~l~~~~~  232 (369)
                            -|                  .+.|++.|++        ++.+|++--. ....|.+.+    +++|.++|+++ 
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~-  628 (831)
T 4a0g_A          550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR-  628 (831)
T ss_dssp             SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-
T ss_pred             cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-
Confidence                  01                  2567777752        3445555443 466676643    99999999999 


Q ss_pred             hccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEEEEeC
Q 017569          233 EETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVVWRT  292 (369)
Q Consensus       233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l~~~~  292 (369)
                           |+++|+|+++.++..  ..........-...|.+|  ..|.+.+. ...|++++++
T Consensus       629 -----gilLI~DEV~tGfGR--tG~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~  680 (831)
T 4a0g_A          629 -----KIPVIFDEVFTGFWR--LGVETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATD  680 (831)
T ss_dssp             -----TCCEEEECTTTTTTT--TSBSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECH
T ss_pred             -----CCeEEEEcCcccccc--CCCchhhHhcCCCCcEEE--EecccccCccCcEEEEECH
Confidence                 999999999876432  111111111111357776  55877655 4668888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-111
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-22
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	5e-22
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-10

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  329 bits (843), Expect = e-111
 Identities = 163/338 (48%), Positives = 224/338 (66%), Gaps = 1/338 (0%)

Query: 11  REILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEP 70
            E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW + 
Sbjct: 9   SELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE 68

Query: 71  ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
              KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA 
Sbjct: 69  NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128

Query: 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM 190
           ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   M
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFM 187

Query: 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250
           +P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF
Sbjct: 188 DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 247

Query: 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
           +APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG  
Sbjct: 248 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 307

Query: 311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDH 348
             TF +NFS+ + Q+IAQYY+F+RLG E         +
Sbjct: 308 IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASY 345

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 96.0 bits (238), Expect = 2e-22
 Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 54/341 (15%)

Query: 22  YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECD-------- 73
           Y+R  IP    P      E   Q +   +M            VT W  P           
Sbjct: 37  YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85

Query: 74  ------KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV----GVGT 123
                  ++  +I          P  TEL+   ++ +  +   P A          GV  
Sbjct: 86  YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145

Query: 124 VGSSEAIMLAGLAFKRKWQQKRKE------QGKPYDKPNIVTGANVQVCWEKFARYFEVE 177
             +SEA ++A LA + K  ++ +       QG   +K             E+      V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205

Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
           LK +   +G + M      E ++ +         V A LG+T    F+++  +  +  + 
Sbjct: 206 LKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE- 263

Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291
                 D  +HVDAA  G            +  +    S N + HK+ LV      +  +
Sbjct: 264 -----EDIWLHVDAAYAGSAFICPEFRHLLNG-VEFADSFNFNPHKWLLVNFDCSAMWVK 317

Query: 292 TKDDLP-----DELVFHINYLGSDQPTFTLNFSKGSSQIIA 327
            + DL      D +    ++ GS   T   ++     +   
Sbjct: 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFR 358

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (234), Expect = 5e-22
 Identities = 39/330 (11%), Positives = 93/330 (28%), Gaps = 39/330 (11%)

Query: 21  RYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF------VTTWMEPECDK 74
             +R  + + K P++   +      +++  ++D N  L           V + +      
Sbjct: 8   HLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHY 67

Query: 75  LVMASINKNYVDMDEYP------VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
             +  I ++       P      +  ++ N  V  +  L          A       ++ 
Sbjct: 68  RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH----SVASCFVVPMATG 123

Query: 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEG 186
             +       R  + K K          I+     Q    K       E   ++  LE  
Sbjct: 124 MSLTLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174

Query: 187 YYVMNPVKAVE----LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242
               +          L  E+ +C+ +          + ++ L  +         +D P  
Sbjct: 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN------YDIPHV 228

Query: 243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302
           V+ A G   +  ++  ++   R+  + +   S  K  +V  G   +     +    ++  
Sbjct: 229 VNNAYGLQSSKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF-NEPFIQDISK 286

Query: 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332
                 S  P+  +  +  S          
Sbjct: 287 MYPGRASASPSLDVLITLLSLGCSGYRKLL 316

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 59.9 bits (144), Expect = 1e-10
 Identities = 38/315 (12%), Positives = 83/315 (26%), Gaps = 45/315 (14%)

Query: 1   MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
           ++    E     +L+     + +       K+P+N +  E     +    M+D +     
Sbjct: 9   LIPKNMEKRGELVLNEYL--KEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKS 66

Query: 61  AS--------FVTTWMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLF 108
                     +     E           + N VD         +   L N+ +       
Sbjct: 67  VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQL 126

Query: 109 NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168
              V        + T  S+   +   L+  RK                ++          
Sbjct: 127 GLNVH------AIATPISTGMSISLCLSAARKKYGSNV----------VIYPYASHKSPI 170

Query: 169 KFARYFEVELKEVK--LEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDV 221
           K   +  + ++ V+  L+     +        + +     N  CV + L        +D+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230

Query: 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV 281
             +  +    +       P  ++ A         Y +         V ++  S  K  L 
Sbjct: 231 VEIAKICENYD------IPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLT 282

Query: 282 YAGVGWVVWRTKDDL 296
             G G V     + +
Sbjct: 283 PIGGGLVYSTDAEFI 297

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	100.0
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.97
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.94
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.94
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.94
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.93
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.92
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.87
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.87
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.87
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.86
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.86
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.85
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.85
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.85
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.84
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.83
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.81
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.81
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.81
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.8
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.8
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.8
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.8
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.79
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.79
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.78
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.78
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.78
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.77
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.76
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.76
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.75
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.74
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.74
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.73
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.73
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.72
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.71
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.7
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.7
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.69
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.69
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.69
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.68
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.66
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.66
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.66
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.65
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.64
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.64
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.63
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.63
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.63
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.62
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.61
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.6
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.59
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.59
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.58
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.58
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.58
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.58
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.58
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.58
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.57
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.57
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.53
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.51
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.5
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.49
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.46
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.45
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.34
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.23
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.95
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.92
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.88
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.69
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.57
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.47
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.47
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.12

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-57  Score=445.87  Aligned_cols=351  Identities=45%  Similarity=0.818  Sum_probs=320.1

Q ss_pred             ccccccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCCCCCCCCc
Q 017569           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYP   91 (369)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~   91 (369)
                      +.+++.|++..+....++.++|..+.+.+++.+.+++.+.++++|+.|+.+|++++.++.+.+++.+++|.|..+++.+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~~~P   89 (450)
T d1pmma_          10 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYP   89 (450)
T ss_dssp             HHHCCTTTSGGGSSCCCCSSCCCSCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTSH
T ss_pred             hhhccchhhhhhccccccccCCccCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCCcccCc
Confidence            46889999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHH
Q 017569           92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA  171 (369)
Q Consensus        92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~  171 (369)
                      .+.++|+++.+|+++++|++........|++|+|||+||+++++++|++|..++...|..... .++++...|+++.+++
T Consensus        90 ~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~-~~~~~~~~H~s~~Kaa  168 (450)
T d1pmma_          90 QSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK-PNLVCGPVQICWHKFA  168 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSC-CEEEESSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCC-ceEEecccHHHHHHHH
Confidence            999999999999999999986544456799999999999999999999998887777755543 5667888999999999


Q ss_pred             hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccccc
Q 017569          172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI  251 (369)
Q Consensus       172 ~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~  251 (369)
                      +++|++++.||+++++++||+++|+++++++|++|++++|+|.||.+||+++|+++|++.+..++.++|+|||||+|+++
T Consensus       169 ~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~  248 (450)
T d1pmma_         169 RYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  248 (450)
T ss_dssp             HHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HHcCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccce
Confidence            99999999999987679999999999999999999999999999999999999999877655555599999999999999


Q ss_pred             ccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHH
Q 017569          252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ  331 (369)
Q Consensus       252 ~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~  331 (369)
                      +||..+....++.++++||+++|+|||+++|+|||++++|++..+...+...+.|+++...++++++||++..++++|+.
T Consensus       249 ~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~  328 (450)
T d1pmma_         249 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYE  328 (450)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHH
T ss_pred             eeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHH
Confidence            88888877788889999999999999999999999999999877766666778899887777889999999889999999


Q ss_pred             HHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          332 FIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       332 l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ++.+|.+|++++  ++.++|+||+++|++.+.|+
T Consensus       329 l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~e  362 (450)
T d1pmma_         329 FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYE  362 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            999999999999  99999999999999998764

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.5e-49  Score=391.14  Aligned_cols=330  Identities=19%  Similarity=0.243  Sum_probs=269.8

Q ss_pred             hhHhhhCCCCCCCCCCCCHHHHHHHHHHhhh----hcCCCCccccccccC-CCh-HHHHHHHHHHhccCCCCCCCCcchH
Q 017569           21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTT-WME-PECDKLVMASINKNYVDMDEYPVTT   94 (369)
Q Consensus        21 ~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~----~~~~p~~~l~~~~~~-~~~-~~v~~~~~~~~~~n~~~~~~~~~~~   94 (369)
                      ..++..++. .+|+.|.+.+++++++.+.+.    ++.||+|  .++++. ..+ ..+.+.+..++|.|...|..+|..+
T Consensus        36 ~~l~~~~~~-~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f--~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t  112 (476)
T d1js3a_          36 GYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACT  112 (476)
T ss_dssp             TCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHH
T ss_pred             HHHHHhcCc-ccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHhhcccccchhhhhhHH
Confidence            345666775 799999999999999988775    3678987  344433 333 4578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCC----CCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC------CCCeEEecCCCc
Q 017569           95 ELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNIVTGANVQ  164 (369)
Q Consensus        95 ~le~~~~~~la~l~g~~~~~----~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~------~~~~Vi~s~~~h  164 (369)
                      ++|+++.+|+++++|++..+    ....+|++|+|||+||+++++++|+++.++....+...      .+++|++|+.+|
T Consensus       113 ~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H  192 (476)
T d1js3a_         113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH  192 (476)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEeccccc
Confidence            99999999999999998532    12356899999999999999999997655443222211      235799999999


Q ss_pred             chHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC
Q 017569          165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      +|+.+++.++|++++.||++++ ++||+++|+++|++.      |.+|++++|+|.+|.+||+++|+++|+++      +
T Consensus       193 ~Si~ka~~~lGl~~~~v~~d~~-~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~------~  265 (476)
T d1js3a_         193 SSVERAGLIGGVKLKAIPSDGK-FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE------D  265 (476)
T ss_dssp             HHHHHHHHHHTCEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT------T
T ss_pred             HHHHHHHHhcCceEEEeccCCC-CCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhc------C
Confidence            9999999999999999999875 899999999999863      57899999999999999999999999999      9


Q ss_pred             ceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCC-------
Q 017569          239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD-------  310 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~-------  310 (369)
                      +|+||||||||+..  +.++.+..+. ++.+||+++|+|||+++|++||++++|++..+...+.....|+...       
T Consensus       266 ~wlHVDAA~Gg~~~--~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (476)
T d1js3a_         266 IWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI  343 (476)
T ss_dssp             CEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSC
T ss_pred             cEEEEecccchhhh--hhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccccccccc
Confidence            99999999999877  4455455555 7789999999999999999999999998755544444444454322       


Q ss_pred             --CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          311 --QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       311 --~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                        ..+++++++|++. ++++|++++.+|.+|++++  +++++|+||+++|++.+.|+
T Consensus       344 ~~~~~~~~~~sr~~~-al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fe  399 (476)
T d1js3a_         344 TDYRHWQLPLGRRFR-SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE  399 (476)
T ss_dssp             CCGGGSSSCSCCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred             ccccccccccchhhH-HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence              1246789999976 8999999999999999999  99999999999999998774

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=268.87  Aligned_cols=302  Identities=12%  Similarity=0.004  Sum_probs=220.5

Q ss_pred             hhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccCCCCC----C-------C--C
Q 017569           24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDM----D-------E--Y   90 (369)
Q Consensus        24 ~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~----~-------~--~   90 (369)
                      ++.+++.++|+.|.+.+++++.+.++..++.++..++.++.... .....+++.+....+....    .       .  +
T Consensus        11 ~~~~~~~~lP~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (445)
T d3bc8a1          11 RLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGERE-GRVASALVARRHYRFIHGIGRSGDISAVQPKAAGS   89 (445)
T ss_dssp             HHHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCC-CCCSCHHHHHHTTTCCSCBCC-------CCSBHHH
T ss_pred             HHHhhcCCCCcCCCCHHHHHHHHHHHHhccCCcccCcccccccC-ccccHHHHHHHHHhhccccccCcchhhhhhhhccc
Confidence            44556568999999999999999988766543333222211111 1111233333332221111    1       1  1


Q ss_pred             cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHH
Q 017569           91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF  170 (369)
Q Consensus        91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~  170 (369)
                      +...++|.++.+|+++++|.+..    ..+.+|+|||+++.+++..++..+         ...+++||+|...|+++.++
T Consensus        90 ~~~~~le~~~~~~~~~l~g~~~~----~~~~~~~~~t~~~~~~~l~a~~~~---------~~~~~~vi~~~~~H~s~~~a  156 (445)
T d3bc8a1          90 SLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHK---------RPKAKYIIWPRIDQKSCFKS  156 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHH---------CTTCCEEEEECCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcc----cCccccccchHHHHHHHHHHHHHh---------CCCCCEEEEcCcccHHHHHH
Confidence            13568999999999999999862    458999999977666555543321         11257899999999999999


Q ss_pred             HhhhcceeEEEec--cCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          171 ARYFEVELKEVKL--EEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       171 ~~~~G~~v~~v~~--~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      ++++|++++.|++  +.+++.+|+++|+++|++    ++.+|+++.|++++|.++|+++|+++|+++      ++|+|+|
T Consensus       157 ~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~------~~~l~vD  230 (445)
T d3bc8a1         157 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------DIPHVVN  230 (445)
T ss_dssp             HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCEEEE
T ss_pred             HHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHh------CCcEEEE
Confidence            9999999888864  334699999999999965    578999999999999999999999999999      9999999


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhH
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ  324 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~  324 (369)
                      +|++++..++. +.....+...++|++++|+|||+++|.|+|++++++...+. .+  ..          ...++++...
T Consensus       231 ~a~~~~~~~~~-~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~-~~--~~----------~~~~~~~~~~  296 (445)
T d3bc8a1         231 NAYGLQSSKCM-HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQ-DI--SK----------MYPGRASASP  296 (445)
T ss_dssp             CTTTTTCHHHH-HHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHH-HH--HH----------HSCSCBCSHH
T ss_pred             ccchhhhhhcc-ccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHH-HH--HH----------HHhhcccCcc
Confidence            99997654221 11123344668999999999999999999999998754332 11  01          1224555667


Q ss_pred             HHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          325 IIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       325 ~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .+.+|+++..+|.+|+...  +..++++|++++|++.
T Consensus       297 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l  333 (445)
T d3bc8a1         297 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL  333 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999988  8999999999999764

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.97  E-value=1e-29  Score=246.99  Aligned_cols=293  Identities=14%  Similarity=0.098  Sum_probs=209.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhcCCCCccc-ccc--ccCCChHHHHHHHHHHhcc-----CCC--CCCCC--cchHHH
Q 017569           29 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNL-ASF--VTTWMEPECDKLVMASINK-----NYV--DMDEY--PVTTEL   96 (369)
Q Consensus        29 ~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l-~~~--~~~~~~~~v~~~~~~~~~~-----n~~--~~~~~--~~~~~l   96 (369)
                      ..++|+.|.++.++++.++++...+.+...++ +.+  ......+.+..........     +..  ++..+  .....+
T Consensus        35 ~~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  114 (434)
T d2z67a1          35 HRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYAL  114 (434)
T ss_dssp             HCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHH
T ss_pred             cccCCCCCCCHHHHHHHHHHHHhcCcccccccccccceecccchhHHhhcccccccccccccchhhhhhhhhhhHHHHHH
Confidence            34689999999999999998876553322221 111  1112223333222111111     111  11111  134678


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCeEEe-CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhc
Q 017569           97 QNRCVNMIAHLFNTPVADDKTAVGVGT-VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE  175 (369)
Q Consensus        97 e~~~~~~la~l~g~~~~~~~~~~~~~t-~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G  175 (369)
                      |.++..|+.+++|.+.      .+.++ .|+++++.+++.+.+...           .+++||+|...|+++.+++...|
T Consensus       115 ~~~~~~~~~~~~g~~~------~~~~~~~~t~~~~~~~l~a~r~~~-----------~~~~vi~s~~~H~s~~k~~~~~g  177 (434)
T d2z67a1         115 TNKILESFFKQLGLNV------HAIATPISTGMSISLCLSAARKKY-----------GSNVVIYPYASHKSPIKAVSFVG  177 (434)
T ss_dssp             HHHHHHHHHHHTTCCC------EEEEESSCHHHHHHHHHHHHHHHH-----------CCCEEEEECCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCc------ceeecCcHHHHHHHHHHHHHHHhh-----------cCceEEEeccCCHHHHHHHHHhC
Confidence            8889999999999985      24444 455556666666655431           24689999999999999999999


Q ss_pred             ceeEEEec--cCCccccCHHHHHHHHhh-----cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccc
Q 017569          176 VELKEVKL--EEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG  248 (369)
Q Consensus       176 ~~v~~v~~--~~~~~~~d~~~L~~~i~~-----~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~  248 (369)
                      ++++.|++  +++++.+|+++|+++|++     ++.+|++++|++++|.++|+++|+++|+++      ++|+|||+|||
T Consensus       178 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~------~~~l~vD~a~g  251 (434)
T d2z67a1         178 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIPHIINGAYA  251 (434)
T ss_dssp             CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCCEEEECTTT
T ss_pred             CcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHh------CCeEEEeccch
Confidence            99888874  345689999999999975     578899999999999999999999999999      99999999998


Q ss_pred             cccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHH
Q 017569          249 GFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ  328 (369)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~  328 (369)
                      ++...  .+.........++|++++|+||++++|.|+|+++++++..+. .+.  .          +..++.+...++.+
T Consensus       252 ~~~~~--~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~-~~~--~----------~~~~~~~~~~~~~~  316 (434)
T d2z67a1         252 IQNNY--YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK-EIS--L----------SYPGRASATPVVNT  316 (434)
T ss_dssp             TTCHH--HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHH-HHH--T----------TSCSCBCSHHHHHH
T ss_pred             hhhhh--ccccccccccCCcceEEEcCccccccCCCccccccCcHHHHH-HHH--h----------hcccccccchHHHH
Confidence            75431  111112222458999999999999999999999998754432 111  0          11244455578999


Q ss_pred             HHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          329 YYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       329 ~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      |+++..+|.+|+.++  ++.++++|++++|++.
T Consensus       317 ~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         317 LVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988  8999999999999874

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.4e-25  Score=214.45  Aligned_cols=265  Identities=16%  Similarity=0.070  Sum_probs=194.3

Q ss_pred             ccCCChHHHHHHHHHHhccCCC--CCCC--Cc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHH
Q 017569           64 VTTWMEPECDKLVMASINKNYV--DMDE--YP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA  136 (369)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~n~~--~~~~--~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~  136 (369)
                      .+++.++.+.+++.+++.....  ++..  ++   ...++.+++++.+++++|++++     .+++|+|+|+++..++.+
T Consensus        10 a~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-----~I~~~~~~t~~l~~~~~~   84 (391)
T d1p3wa_          10 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-----EIVFTSGATESDNLAIKG   84 (391)
T ss_dssp             TCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-----GEEEESSHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-----cEEEECCHHHHHHHHHhh
Confidence            4556778899999988764322  2211  11   2345556788999999999873     489999999999888887


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh---hhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      +.....    .     .+++|++++..|+++....+   ..|++++.+|.+++ +.+|+++++++++++|++|++++++|
T Consensus        85 ~~~~~~----~-----~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~~~~~i~~~T~lv~is~~~n  154 (391)
T d1p3wa_          85 AANFYQ----K-----KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVNN  154 (391)
T ss_dssp             HHHHHG----G-----GCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBCT
T ss_pred             hhhhhc----C-----CCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC-CeEcHHHHHHhCCCCcEEEEEECCCC
Confidence            654311    1     14799999999998766554   45999999999864 79999999999999999999999999


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      +||.+.|+++|+++|+++      ++++++|++++.+..       ++++...++|+++.++|||+ +|.|+|+++++++
T Consensus       155 ~tG~~~~~~~I~~~~~~~------~~~~ivD~~~~~g~~-------~~d~~~~~~D~~~~s~~k~~-g~~g~g~~~~~~~  220 (391)
T d1p3wa_         155 EIGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKL-------PIDLSQLKVDLMSFSGHKIY-GPKGIGALYVRRK  220 (391)
T ss_dssp             TTCCBCCHHHHHHHHHHH------TCEEEEECTTTBTTB-------CCCTTTSCCSEEEEESTTTT-SCSSCEEEEECBT
T ss_pred             CCeeECCHHHHHHHhccC------CcEEEEeeccccCCc-------cccchhcccccccccccccc-CCCceEEEEEecc
Confidence            999999999999999999      999999999987665       35666668999999999995 8999999999875


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ... ..   .+.+.++........++.......++...+........... +..++..++.+.|.+.+.
T Consensus       221 ~~~-~~---~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  285 (391)
T d1p3wa_         221 PRV-RI---EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEE  285 (391)
T ss_dssp             TBC-CC---CCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTT
T ss_pred             hhc-cc---CCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcC
Confidence            322 11   12223322212122345555444555444444433333334 777888888888887654

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=2.7e-26  Score=216.59  Aligned_cols=257  Identities=16%  Similarity=0.111  Sum_probs=178.9

Q ss_pred             ChHHHHHHHHHHhccCCC-CCCCCcc-----hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYV-DMDEYPV-----TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW  141 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~-~~~~~~~-----~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~  141 (369)
                      .++++.+++.++.+.... ++...+.     ...+.+.+++.+++++|.+.       ..+|+||++||..++.++.++ 
T Consensus        14 l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~-------~~~t~g~t~a~~~~~~al~~~-   85 (364)
T d2e7ja1          14 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV-------ARVTNGAREAKFAVMHSLAKK-   85 (364)
T ss_dssp             CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSE-------EEEESSHHHHHHHHHHHHCCT-
T ss_pred             CCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCE-------EEEECcHHHHHHHHHHHHhCC-
Confidence            457777777765432111 1111111     11244456667999999875       789999999999999887542 


Q ss_pred             HHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcC-----cEEEEeeCCCCc
Q 017569          142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENT-----ICVAAILGSTLT  215 (369)
Q Consensus       142 ~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~-----~~v~~~~~~~~t  215 (369)
                                  +++||++.++|++...+++..|++++.+|+++ .++.+|++++++++++++     ++|++++++|++
T Consensus        86 ------------gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~t  153 (364)
T d2e7ja1          86 ------------DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNY  153 (364)
T ss_dssp             ------------TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTT
T ss_pred             ------------CcEEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCC
Confidence                        57999999999999999999999999999864 458999999999998754     478899999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |.+.|+++|+++|+++      |+++|+|+||+.+..|       .+....++|+++.|+||++++|.++|+++.++. .
T Consensus       154 G~~~~l~~I~~ia~~~------~i~livD~a~~~g~~~-------~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~-~  219 (364)
T d2e7ja1         154 GNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMP-------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE-W  219 (364)
T ss_dssp             CCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBC-------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT-T
T ss_pred             ceeecchhheeccccc------cchhhccccchhhhhh-------hcccccccceeeeccccccCCCCCEEEEEECHH-H
Confidence            9999999999999999      9999999999876542       223333789999999999988888999987654 2


Q ss_pred             cccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ....+.....+....  ...+.++..+.....+..++... .+.+..+ +..++++++.+.|++.|+
T Consensus       220 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~  283 (364)
T d2e7ja1         220 AEIVLRRSEKYKNKE--VELLGCTARGATIITLMASFPHV-RERIKRWDEEVEKARRFAAEMEKLGI  283 (364)
T ss_dssp             TTTTTCBCSSCTTSB--GGGTTCCCCSHHHHHHHHHHHHH-HHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhccccCccc--ccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            221111111221111  11122344344344444444443 2233334 667899999999998875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1e-25  Score=216.77  Aligned_cols=273  Identities=15%  Similarity=0.057  Sum_probs=205.4

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCCCC-----cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMDEY-----PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~-----~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |-+...++.++.+.|.+.+++.....++..+     ....++.+++++.+++++|+...    ...+++.++|+++...+
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~----~~i~~~~~~T~~~~~~~  101 (405)
T d1jf9a_          26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA----EELVFVRGTTEGINLVA  101 (405)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG----GGEEEESSHHHHHHHHH
T ss_pred             EeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCc----ccccccCcHHHHHHHHH
Confidence            3344455667888888888775533333211     13345666889999999997642    34899999999998887


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .+.....         ...+++|++++..|++    +...++..|++++.+|++++ +.+|++.++++++++|++|++++
T Consensus       102 ~~~~~~~---------~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~-g~~~~~~~~~~i~~~t~lv~~~~  171 (405)
T d1jf9a_         102 NSWGNSN---------VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAITH  171 (405)
T ss_dssp             HHHHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEEES
T ss_pred             hcccccc---------cCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC-CcCCHHHHHHhccCCcEEEEEec
Confidence            7654321         1125789999999988    44555667999999999885 89999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      .+|.+|.+.|+++|+++||++      ++++++|++++.+..       ++++...++|++++++|||+ +|.|+|++++
T Consensus       172 v~~~tG~~~pi~~i~~~~~~~------g~~~~vD~~q~~g~~-------~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v  237 (405)
T d1jf9a_         172 VSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHH-------PVDVQALDCDFYVFSGHKLY-GPTGIGILYV  237 (405)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGTT-SCSSCEEEEE
T ss_pred             CCCcccccCchHHhhhHHHHc------CCeeecccceecccc-------ccchhhcCCceeeccccccc-cCCCceeeee
Confidence            999999999999999999999      999999999998765       34555558999999999995 8999999999


Q ss_pred             eCCCCccccccccc-Ccc-----C-------CCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHH
Q 017569          291 RTKDDLPDELVFHI-NYL-----G-------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       291 ~~~~~~~~~~~~~~-~y~-----~-------~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~  355 (369)
                      ++.. +. .+.... .+.     .       .....-...||++....+++..+++.+...|++.+  ++..+++++.+.
T Consensus       238 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~  315 (405)
T d1jf9a_         238 KEAL-LQ-EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ  315 (405)
T ss_dssp             CHHH-HT-TCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             chhh-hc-ccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhh
Confidence            7541 10 100000 000     0       00000012489999889999999999888888888  889999999999


Q ss_pred             HHhcCCC
Q 017569          356 VIHSSYF  362 (369)
Q Consensus       356 L~~~g~~  362 (369)
                      ++..+..
T Consensus       316 l~~~~~~  322 (405)
T d1jf9a_         316 LESVPDL  322 (405)
T ss_dssp             HTTSTTE
T ss_pred             hhcCCcc
Confidence            9887654

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.94  E-value=1.3e-25  Score=213.90  Aligned_cols=267  Identities=11%  Similarity=-0.024  Sum_probs=194.6

Q ss_pred             cCCChHHHHHHHHHHhcc----CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      .++.|..+.+++.++++.    +...+..+....++.+++++.+++++|++++     .+++|+|+|+|+.+++.++..+
T Consensus        16 ~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~-----~i~~~~g~t~a~~~~~~~l~~~   90 (381)
T d1elua_          16 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-----TITITDNVTTGCDIVLWGLDWH   90 (381)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-----GEEEESSHHHHHHHHHHHSCCC
T ss_pred             ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc-----cEEEECChHHHhhhcchhhhhc
Confidence            344556677777766542    2222223345567777899999999999863     4899999999999988775321


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHH----HHhhhcceeEEEeccCCc-cccCHHHHHHHHhhcCcEEEEeeCCCCc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYFEVELKEVKLEEGY-YVMNPVKAVELVDENTICVAAILGSTLT  215 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~----~~~~~G~~v~~v~~~~~~-~~~d~~~L~~~i~~~~~~v~~~~~~~~t  215 (369)
                                  .+++|++++..|+++..    .++..|++++.+|.+.+. ...+.+.++++++++|+++++++++|+|
T Consensus        91 ------------~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~t  158 (381)
T d1elua_          91 ------------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNT  158 (381)
T ss_dssp             ------------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTT
T ss_pred             ------------CCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccc
Confidence                        25789999999987554    445579999999986532 2223577888888999999999999999


Q ss_pred             ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       216 G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      |.+.|+++|.++|+++..  ..++++++|++++.+..       ++++...++|++++++|||+++|.|+|++++++...
T Consensus       159 G~~~~~~~I~~l~~~~~~--~~~~~~~vD~~~~~g~~-------~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~  229 (381)
T d1elua_         159 GQVLPLAEIMAVCRRHQG--NYPVRVLVDGAQSAGSL-------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL  229 (381)
T ss_dssp             CCBCCHHHHHHHHHHCCS--SSCCEEEEECTTTBTTB-------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred             cccchhhHHHHHHhhccc--ccccccccccccccccc-------cccccccccccccccccccccccchhhHHHhhHHHH
Confidence            999999999999998511  11689999999987655       345555689999999999999999999999976532


Q ss_pred             cccccccccCccCCC--------C-------CCccccCCcchhHHHHHHHHHHHhcHhhHH-HH--HhhHHHHHHHHHHH
Q 017569          296 LPDELVFHINYLGSD--------Q-------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIP-SF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       296 ~~~~~~~~~~y~~~~--------~-------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~-~~--~~~~~a~~l~~~L~  357 (369)
                      .  .+  .+.+.+..        .       ......||++....+++.+++..+...|.. .+  +..++++++.++|+
T Consensus       230 ~--~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~  305 (381)
T d1elua_         230 G--EI--NPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLN  305 (381)
T ss_dssp             G--GC--CCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--hc--CcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHh
Confidence            1  11  11111110        0       000123788888888888999988777753 33  88899999999999


Q ss_pred             hcCC
Q 017569          358 HSSY  361 (369)
Q Consensus       358 ~~g~  361 (369)
                      +++.
T Consensus       306 ~~~~  309 (381)
T d1elua_         306 QLPH  309 (381)
T ss_dssp             HSTT
T ss_pred             cCCC
Confidence            9754

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.93  E-value=1.9e-24  Score=208.00  Aligned_cols=270  Identities=17%  Similarity=0.056  Sum_probs=203.4

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCCCC-----cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMDEY-----PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG  134 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~-----~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al  134 (369)
                      |-+...++.++.+.+.+.+++...+.++..+     ....++.+++++.+++++|++.+    ..+++++++++++.+.+
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~----~~i~~~~~tt~~~n~~~  101 (408)
T d1t3ia_          26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP----REIVYTRNATEAINLVA  101 (408)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG----GGEEEESSHHHHHHHHH
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCc----ccEEeecchHHHHHHHH
Confidence            4444455667888888888776544333221     22345666789999999999852    24788889999988877


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEee
Q 017569          135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .......         -..+++|++++..|++..    ..++..|+.++.+|.+.+ +..|.+.|+++++++|++|++++
T Consensus       102 ~~~~~~~---------~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~l~~~~~~~t~lv~i~~  171 (408)
T d1t3ia_         102 YSWGMNN---------LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESFDLEHFKTLLSEKTKLVTVVH  171 (408)
T ss_dssp             HHTHHHH---------CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSBCHHHHHHHCCTTEEEEEEES
T ss_pred             hhccccc---------cCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc-ccccHHHhhhccCCCceEEEEec
Confidence            6643210         112468999999998744    455567999999998864 78999999999999999999999


Q ss_pred             CCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEE
Q 017569          211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW  290 (369)
Q Consensus       211 ~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~  290 (369)
                      .++.+|.+.|+++|+++|+++      ++++|+|++++.+..       ++++...++|.+++++|||+ +|.|+|++++
T Consensus       172 ~~~~tG~~~p~~~i~~~~~~~------g~~~ivDa~q~~g~~-------~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v  237 (408)
T d1t3ia_         172 ISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHY-------PLDVQLIDCDWLVASGHKMC-APTGIGFLYG  237 (408)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEE
T ss_pred             ccccccccCcHHHHhhhhhcc------Cceeeeccceecccc-------cccccccCCceEEecccccc-CCCCcccccc
Confidence            999999999999999999999      999999999998766       35565558999999999994 8999999999


Q ss_pred             eCCCCcccccccccCccCCCC---------------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHH
Q 017569          291 RTKDDLPDELVFHINYLGSDQ---------------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSS  353 (369)
Q Consensus       291 ~~~~~~~~~~~~~~~y~~~~~---------------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~  353 (369)
                      +++...     ..+++.++..               ..--..||++....+++-.+++.+...|.+++  +...+++++.
T Consensus       238 ~~~~~~-----~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  312 (408)
T d1t3ia_         238 KEEILE-----AMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW  312 (408)
T ss_dssp             CHHHHH-----HSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             chhhhh-----cCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHh
Confidence            864211     1112221110               00012489998888899999999888888888  8889999999


Q ss_pred             HHHHhcCCC
Q 017569          354 FFVIHSSYF  362 (369)
Q Consensus       354 ~~L~~~g~~  362 (369)
                      +.+.+.+..
T Consensus       313 ~~~~~~~~~  321 (408)
T d1t3ia_         313 QGLGQIPQL  321 (408)
T ss_dssp             HHHHTCTTE
T ss_pred             hhhccCccc
Confidence            999887654

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.2e-23  Score=196.84  Aligned_cols=263  Identities=16%  Similarity=0.079  Sum_probs=189.1

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCC-C---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDE-Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK  140 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~-~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~  140 (369)
                      ++++++.+.+++.+++.+...++.. +   ....++.+++++.+++++|++++     .+++++|+|+++..++..+...
T Consensus        10 ~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~-----~i~~~~~~T~~l~~~~~~~~~~   84 (376)
T d1eg5a_          10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-----EIFFTSCATESINWILKTVAET   84 (376)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-----GEEEESCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-----cEEEECCHHHHHHhhhhccccc
Confidence            4456677889988888765444421 1   13445556788999999999873     4999999999998888765442


Q ss_pred             HHHHHHhcCCCCCCCeEEecCCCcchHHHHH---hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       141 ~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      .         ..++..|+++...|.++....   +..|+++++||++++ +.+|+++++++|+++|++|++++++++||.
T Consensus        85 ~---------~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~-~~id~~~l~~~i~~~t~lv~is~v~~~tG~  154 (376)
T d1eg5a_          85 F---------EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGT  154 (376)
T ss_dssp             T---------TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCB
T ss_pred             c---------cccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC-CeECHHHHHHhcCCCceEEEEECCccccce
Confidence            1         112457777777777655544   445999999999875 899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|.++++.+.+    +++++||++++.+..       +.++...++|.+++++|||+ +|.|.|++++++...+ 
T Consensus       155 ~~~~~~i~~~~~~~~~----~~~~~vD~~q~~g~~-------~~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~~-  221 (376)
T d1eg5a_         155 IQPVEDVTRIVKKKNK----ETLVHVDAVQTIGKI-------PFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPI-  221 (376)
T ss_dssp             BCCHHHHHHHHHHHCT----TCEEEEECTTTTTTS-------CCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCC-
T ss_pred             eeeehhhhhhhhhccc----CceeEEEeeeccccc-------cccccccCccceecccceee-cCCCceeEEeccCccc-
Confidence            9999999999976633    899999999987665       35555568999999999994 8999999998765332 


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcC
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g  360 (369)
                           .+.+.++........++.+...................... +...+.+++.+.|...+
T Consensus       222 -----~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  280 (376)
T d1eg5a_         222 -----RPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLG  280 (376)
T ss_dssp             -----CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -----CCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccc
Confidence                 12222222111122355555444444444444443333333 67777888888887644

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.87  E-value=3.2e-21  Score=183.97  Aligned_cols=272  Identities=9%  Similarity=-0.027  Sum_probs=192.8

Q ss_pred             cCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      .|...++|+.+.|.++ ++.+.+++.++++.+...|....+..++++++.+|+.+..|.+.+.   ..+++|+|+++++.
T Consensus        28 ~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~---~~i~it~G~~~al~  104 (388)
T d1j32a_          28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHH
T ss_pred             CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC---ceEEEcCCHHHHHH
Confidence            4555677777777654 5778899999888766677777789999999999999999887532   45899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEee
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL  210 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~  210 (369)
                      .++.++.++             ++.|++++|+|..+...++..|..++.++.+. +++.+|+++|++++++++++++++.
T Consensus       105 ~~~~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~  171 (388)
T d1j32a_         105 NLMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT  171 (388)
T ss_dssp             HHHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred             HHHHHHhCC-------------CCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence            998887553             57999999999999999999999998888754 4588999999999999999999999


Q ss_pred             CCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CC---CCcEEEEcCccCCC-CC
Q 017569          211 GSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP---LVKSINVSGHKYGL-VY  282 (369)
Q Consensus       211 ~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~---~~Dsi~~~~hK~l~-~p  282 (369)
                      |+||||.+.   .+++|+++|+++      ++++++|.+|+.....  .+....... ..   .-..+..+..|.++ .+
T Consensus       172 P~NPTG~~~~~~~~~~l~~~~~~~------~~~iI~De~Y~~~~~~--~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~G  243 (388)
T d1j32a_         172 PSNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCSGFAKTYAMTG  243 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred             CCCCCCcccchhhhhhhhcccccC------CeEEEchhhhhccccc--CCCCCCHHHhCcccccceeEecCChhhhhcch
Confidence            999999984   478888999999      9999999999875541  111111111 10   11244556889875 55


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHh
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIH  358 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~  358 (369)
                      ..+|+++..+ +.. ..+.....+..         ...   ....++++...+  +.+-+++.  +..+..+++.+.|++
T Consensus       244 lRvG~~~~~~-~~~-~~~~~~~~~~~---------~~~---~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  309 (388)
T d1j32a_         244 WRVGFLAGPV-PLV-KAATKIQGHST---------SNV---CTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA  309 (388)
T ss_dssp             TCCEEEECCH-HHH-HHHHHHHHTTT---------CSC---CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHeEEEEECH-HHH-HHHHHhhhhcc---------ccc---cHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899987632 222 11111001110         011   122333333333  33445555  677788888999988


Q ss_pred             cCCC
Q 017569          359 SSYF  362 (369)
Q Consensus       359 ~g~~  362 (369)
                      .+.+
T Consensus       310 ~~g~  313 (388)
T d1j32a_         310 MPGL  313 (388)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6433

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-21  Score=183.39  Aligned_cols=261  Identities=9%  Similarity=-0.029  Sum_probs=189.4

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |...++.|.+++.    ....+. .++...++.+++++.+++++|.+.+    ..++++.|||+++..++..+..+    
T Consensus        27 P~~~~~~Vl~am~----~~~i~H-Rs~~f~~i~~ea~~~l~~llg~~~~----~~ii~~gsgT~a~~~~i~~l~~~----   93 (388)
T d1h0ca_          27 PSNLPPRIMAAGG----LQMIGS-MSKDMYQIMDEIKEGIQYVFQTRNP----LTLVISGSGHCALEAALVNVLEP----   93 (388)
T ss_dssp             CCCCCHHHHHHHT----CCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCCS----
T ss_pred             CCCCCHHHHHHhC----cCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHhhcc----
Confidence            4444577766553    222222 4567888889999999999999852    35788889999999988887442    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHH--HHhhhcceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEK--FARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~--~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l  221 (369)
                               ++++++....|.+...  .+...+..+..++.+.. ..+|.+++++.+. .++++|++++.+|.+|.+.|+
T Consensus        94 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi  163 (388)
T d1h0ca_          94 ---------GDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG-GHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPL  163 (388)
T ss_dssp             ---------SCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred             ---------CCceeeecccceeeeeccccccccccccccccCCc-cccchHHHHHHhccCCcceEEEeeeeeccccccCH
Confidence                     4678888878776443  33455666666666653 6888888877665 488999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|+++|+++      ++++++|++++.+..       ++++...++|.+++++|||+++|.|.|+++++..... ....
T Consensus       164 ~~i~~~~~~~------g~~~~vD~~qs~g~~-------~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~-~~~~  229 (388)
T d1h0ca_         164 DGFGELCHRY------KCLLLVDSVASLGGT-------PLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKK-KMYS  229 (388)
T ss_dssp             TTHHHHHHTT------TCEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHH-HHTT
T ss_pred             HHHHHHhhcc------cccceeccccccccc-------cccccccccceecccccccccCCCceEEEeecHHHHH-hhhh
Confidence            9999999999      999999999987655       3556666899999999999999999999988653110 0000


Q ss_pred             ----cccC---------ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          302 ----FHIN---------YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       302 ----~~~~---------y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                          ....         +...........+|.+.....++..++..+...|+..+  +..+++.++++.+.+.|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~  305 (388)
T d1h0ca_         230 RKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ  305 (388)
T ss_dssp             CSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc
Confidence                0000         11111111112366767667778888888888888888  8999999999999998863

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=7.1e-21  Score=181.06  Aligned_cols=215  Identities=13%  Similarity=0.045  Sum_probs=170.3

Q ss_pred             hcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           52 LDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        52 ~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      ..|...++|+.+.|..+ ++.+.+++.++++.+...|....|..+|++++.+|+.+..|.+.+.   ...++|+|+++|+
T Consensus        28 ~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~---~~i~it~G~~~al  104 (382)
T d1b5pa_          28 RQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQAL  104 (382)
T ss_dssp             HTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHH
T ss_pred             hCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhccccccc---ccceecCCHHHHH
Confidence            45666678888877654 5778999999988777777777899999999999999988877532   4689999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEe
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI  209 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~  209 (369)
                      ..++.++.++             ++.|++++|+|..+...++..|..++.+|+++ +++.+|++++++++++++++++++
T Consensus       105 ~~~~~~l~~~-------------gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~  171 (382)
T d1b5pa_         105 FNLFQAILDP-------------GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN  171 (382)
T ss_dssp             HHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE
T ss_pred             HHHHHHhCCC-------------CCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEEC
Confidence            9998887553             47899999999999999999999999999864 458999999999999999999999


Q ss_pred             eCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCCCCcEEEEcCccCCC-CCCC
Q 017569          210 LGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGL-VYAG  284 (369)
Q Consensus       210 ~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Dsi~~~~hK~l~-~p~g  284 (369)
                      .|+||||.+   +.+++|+++|+++      +++++.|.+|+.+..+  ..... ....... -.+..+.-|.++ .+..
T Consensus       172 ~P~NPTG~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~~~~~-~i~~~s~SK~~~~~GlR  242 (382)
T d1b5pa_         172 SPNNPTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLYE--GEHFSPGRVAPEH-TLTVNGAAKAFAMTGWR  242 (382)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS--SCCCCGGGTCTTT-EEEEEESTTTTTCGGGC
T ss_pred             CCCCCcchhCCHHHHHHHHHHHHHc------CeEEEEEccccceecC--CCCCCHHHcCCCC-EEEEecchhhccCcHhh
Confidence            999999999   4588899999999      9999999999975541  11111 1111222 233345778765 5588


Q ss_pred             eEEEEEe
Q 017569          285 VGWVVWR  291 (369)
Q Consensus       285 ~g~l~~~  291 (369)
                      +|+++..
T Consensus       243 ~G~~~~~  249 (382)
T d1b5pa_         243 IGYACGP  249 (382)
T ss_dssp             CEEEECC
T ss_pred             eEEEEEC
Confidence            9999863

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=5.5e-21  Score=181.92  Aligned_cols=212  Identities=12%  Similarity=0.037  Sum_probs=165.6

Q ss_pred             CccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .++|+.+.|..+ ++.+.+++.++++....+|....|..+|++++.+++.+..+....  ....+++|+|+++++.+++.
T Consensus        27 vi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~--~~~~i~~t~G~~~~l~~~~~  104 (388)
T d1gdea_          27 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD--PKTEIMVLLGANQAFLMGLS  104 (388)
T ss_dssp             CEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC--TTTSEEEESSTTHHHHHHHT
T ss_pred             eEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCC--ChheeeeccCcchHHHHHHH
Confidence            357777776543 577899999998876666777778999999999999887776542  23458999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTL  214 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~  214 (369)
                      ++.++             ++.|+++.|+|..+...++..|++++.+|+++ +++.+|+++|+++++++++++++++|+||
T Consensus       105 ~l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NP  171 (388)
T d1gdea_         105 AFLKD-------------GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNP  171 (388)
T ss_dssp             TTCCT-------------TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred             HhcCC-------------CCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCC
Confidence            87553             57999999999999999999999999999864 45899999999999999999999999999


Q ss_pred             cccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--cccc-CCCCcEEEEcCccCCC-CCCCeEE
Q 017569          215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR-LPLVKSINVSGHKYGL-VYAGVGW  287 (369)
Q Consensus       215 tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~-~~~~Dsi~~~~hK~l~-~p~g~g~  287 (369)
                      ||.+.   .+++|+++|+++      ++++++|++|+.+...  .+...  ..+. ...-..+..+..|.++ .+..+|+
T Consensus       172 tG~~~s~~~~~~l~~~a~~~------~~~vi~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~  243 (388)
T d1gdea_         172 TGAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIYD--DARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF  243 (388)
T ss_dssp             TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCT--TCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEE
T ss_pred             CCCcCCHHHHHHHHHHHHHc------CCEEEEEcCChhhhhc--cCCCCChhhccCCCCeEEEEeCChhhccCccccEEE
Confidence            99994   588899999999      9999999999875441  11111  1111 1111234456889765 5689999


Q ss_pred             EEEe
Q 017569          288 VVWR  291 (369)
Q Consensus       288 l~~~  291 (369)
                      ++..
T Consensus       244 ii~~  247 (388)
T d1gdea_         244 VAAP  247 (388)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            9864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.86  E-value=2.1e-21  Score=185.57  Aligned_cols=266  Identities=13%  Similarity=-0.033  Sum_probs=174.2

Q ss_pred             ccccCCChHHHHHHHHHHhccCCCCCCC----CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHH
Q 017569           62 SFVTTWMEPECDKLVMASINKNYVDMDE----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~n~~~~~~----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~  137 (369)
                      +...++.+..+.+++.+++.....+...    .....++.+++++.+++++|++++     ..++|+++|+++...+...
T Consensus        33 ~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~-----ei~~~~~~T~~~~~~~~~~  107 (404)
T d1qz9a_          33 GNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-----EVVVTDTTSINLFKVLSAA  107 (404)
T ss_dssp             TTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-----SEEECSCHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCC-----cEEEecCchHHHHHHhhhh
Confidence            3334455566788888777543222211    123346667899999999999974     3899999999998877654


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      ...... +      ..+..|++++..|++........+.++..++.+.+ +..+++.++++|+++|++|++++.+|.||.
T Consensus       108 ~~~~~~-~------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~  179 (404)
T d1qz9a_         108 LRVQAT-R------SPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR-LVDSPEELPQAIDQDTAVVMLTHVNYKTGY  179 (404)
T ss_dssp             HHHHHH-H------STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE-EESSGGGHHHHCSTTEEEEEEESBCTTTCB
T ss_pred             hhhhcc-c------CCCcEEEEeccccchHHHHHHhhhheeeeeceecc-ccccchhHHHhcCCCceEEEEecccccccc
Confidence            332110 0      11346777777777766555555555544444432 677888999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC-eEEEEEeCCCCc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDL  296 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g-~g~l~~~~~~~~  296 (369)
                      +.|+++|+++|+++      +++++||++++.+..       ++++...++|.+++++|||+++|+| +|+++.++. ..
T Consensus       180 ~~pv~~i~~~~~~~------~~~~~vD~~q~~g~~-------~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~-~~  245 (404)
T d1qz9a_         180 MHDMQALTALSHEC------GALAIWDLAHSAGAV-------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-LC  245 (404)
T ss_dssp             BCCHHHHHHHHHHH------TCEEEEECTTTTTTS-------CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT-TT
T ss_pred             eecHHHHhcccccc------ccceeEEeecccccc-------ccccccccceEEEEechhhcccCCceEEEEEechh-hh
Confidence            99999999999999      999999999998765       3455555899999999999977666 566665543 32


Q ss_pred             cccccccc-CccCC-------CC------CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHH
Q 017569          297 PDELVFHI-NYLGS-------DQ------PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFF  355 (369)
Q Consensus       297 ~~~~~~~~-~y~~~-------~~------~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~  355 (369)
                      . .+.... .+.+.       ..      ......++........+..++..+...|...+  +...+..++.+.
T Consensus       246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  319 (404)
T d1qz9a_         246 D-LVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIEL  319 (404)
T ss_dssp             T-TSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             h-hCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Confidence            1 111111 11000       00      00112356666556666666666655555544  444444444443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=4.5e-21  Score=180.44  Aligned_cols=263  Identities=10%  Similarity=-0.039  Sum_probs=178.0

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |.+.++.|.++    +.....++ .++...++.+++++.+++++|++++.   ...++|+|||+++..++..+..+    
T Consensus         8 P~~~~~~V~~A----~~~~~~~~-~~~~~~~~~~~~r~~l~~l~~~~~~~---~~i~~t~s~T~~~~~~~~~l~~~----   75 (361)
T d1m32a_           8 PLTTSRTVKEA----MLFDSCTW-DDDYNIGVVEQIRQQLTALATASEGY---TSVLLQGSGSYAVEAVLGSALGP----   75 (361)
T ss_dssp             SCCCCHHHHHT----TCCCCCTT-SHHHHTTTHHHHHHHHHHHHCSSSSE---EEEEEESCHHHHHHHHHHHSCCT----
T ss_pred             CCCCCHHHHHH----hhhhccCC-CcHHHHHHHHHHHHHHHHHhCCCCCC---EEEEECCCHHHHHHHHHHHhhhh----
Confidence            33344555544    33333332 22334456678999999999998632   23678889999998887765331    


Q ss_pred             HHhcCCCCCCCe-EEecCCCcch-HHHHHhhhcceeEEEeccCC-ccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCH
Q 017569          145 RKEQGKPYDKPN-IVTGANVQVC-WEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDV  221 (369)
Q Consensus       145 ~~~~g~~~~~~~-Vi~s~~~h~s-~~~~~~~~G~~v~~v~~~~~-~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l  221 (369)
                               ++. ++++...+.. +.......+.....+..... ....+.+.+...+.+++++|.+++.+|.||.+.|+
T Consensus        76 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i  146 (361)
T d1m32a_          76 ---------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI  146 (361)
T ss_dssp             ---------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred             ---------ccccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhh
Confidence                     234 4444433332 33444555666666665442 23444555556667789999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc
Q 017569          222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       222 ~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      ++|+++|+++      ++++++|++++.+..       +++++..++|++++++|||+++|+|.|+++++++...... .
T Consensus       147 ~~i~~~~~~~------g~~~~vDa~qs~G~~-------~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~-~  212 (361)
T d1m32a_         147 DEVGALAHRY------GKTYIVDAMSSFGGI-------PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACK-G  212 (361)
T ss_dssp             HHHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCT-T
T ss_pred             hhhhhhhccc------ceeeEeecccccCcc-------cccccccccceEEeeecccccCCCCceEEEechhhhhhhc-c
Confidence            9999999999      999999999997765       3566666899999999999999999999999864221100 0


Q ss_pred             cccCccCCC--------CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH---HhhHHHHHHHHHHHhcCCC
Q 017569          302 FHINYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF---CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       302 ~~~~y~~~~--------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~---~~~~~a~~l~~~L~~~g~~  362 (369)
                      ....+....        .......+|.+....+++..++..+..+|....   +..++++.+++.+++.|+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  284 (361)
T d1m32a_         213 HSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFN  284 (361)
T ss_dssp             CCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCc
Confidence            000000000        001112356667777888888888877766544   8899999999999998865

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=2.8e-20  Score=177.76  Aligned_cols=276  Identities=11%  Similarity=0.026  Sum_probs=193.6

Q ss_pred             cCCCCccccccccC----CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchH
Q 017569           53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE  128 (369)
Q Consensus        53 ~~~p~~~l~~~~~~----~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~  128 (369)
                      .|+..++|+.+.|.    ++++.+.+++.++++.....|....|..+|++++.+++++.+|.+.+.   ...++|+|+++
T Consensus        28 ~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~i~i~~G~~~  104 (395)
T d1xi9a_          28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTE  104 (395)
T ss_dssp             TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHH
T ss_pred             CCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc---cccccccccch
Confidence            45666777776652    345778999999987766667777789999999999999999988632   45899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHhhcCcEEE
Q 017569          129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       129 a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      ++.+++.++.++             +++|++++|+|..+...++..|+.++.+|.. ++++.+|++++++++.+++++++
T Consensus       105 ~~~~~~~~~~~~-------------Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~  171 (395)
T d1xi9a_         105 ALQLIFGALLDP-------------GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA  171 (395)
T ss_dssp             HHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred             hhhhhhhhhcCC-------------CCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEE
Confidence            998888887553             4789999999999999999999999999875 34589999999999999999999


Q ss_pred             EeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc-cccccCCCCcEEE-EcCccCCC-C
Q 017569          208 AILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFRLPLVKSIN-VSGHKYGL-V  281 (369)
Q Consensus       208 ~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~~~~~~Dsi~-~~~hK~l~-~  281 (369)
                      ++.|+||||.+.   .+++|+++|+++      +++++.|.+|......  .+.. ...+ ......++ .+..|.++ .
T Consensus       172 l~~P~NPTG~~~s~~~~~~l~~~~~~~------~~~ii~De~y~~~~~~--~~~~~~~~~-~~~~~vi~~~S~SK~~~~~  242 (395)
T d1xi9a_         172 VINPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTYE--GEHISPGSL-TKDVPVIVMNGLSKVYFAT  242 (395)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBSS--SCCCCHHHH-CSSSCEEEEEESTTTTCCG
T ss_pred             ecCCCCCccchhhHHHHHHHHhhhhhc------CeeEEecccccccccc--ccccchhhc-CCCCCEEEEeCcchhcccc
Confidence            999999999984   478899999999      9999999999875441  1111 1111 11223343 35888654 5


Q ss_pred             CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHH
Q 017569          282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVI  357 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~  357 (369)
                      ++.+|++++.+.......+...........      ...+   .+.+.++...+  +.+-+++.  ...++.+++.+.|+
T Consensus       243 GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  313 (395)
T d1xi9a_         243 GWRLGYMYFVDPENKLSEVREAIDRLARIR------LCPN---TPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLN  313 (395)
T ss_dssp             GGCCEEEEEECTTCTTHHHHHHHHHHHHHT------CCSC---SHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcEeeEecCHHHHHHHHHHHHHHhhcCC------CCcC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688899887654332222111000000000      0001   11222222222  23334444  67788889999999


Q ss_pred             hcCCC
Q 017569          358 HSSYF  362 (369)
Q Consensus       358 ~~g~~  362 (369)
                      +.+.+
T Consensus       314 ~~~~~  318 (395)
T d1xi9a_         314 EIPGI  318 (395)
T ss_dssp             TSTTE
T ss_pred             hCCCc
Confidence            88754

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=7.6e-20  Score=173.48  Aligned_cols=247  Identities=13%  Similarity=-0.027  Sum_probs=182.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~--  167 (369)
                      ++...++.+++++.++++++..... +....++|+|||+++..++..+...+          ..+++|++....|++.  
T Consensus        31 ~~~f~~~~~~~~~~~r~~~~~~~~~-~~~~i~~t~sgT~a~~~~~~~l~~~~----------~~gd~vlv~~~~~~~~~~   99 (382)
T d2bkwa1          31 SPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK----------APNKNVLVVSTGTFSDRF   99 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT----------CSCCEEEEECSSHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCC-CCeEEEEeCcHHHHHHHHHHHHHHhc----------CCCCceEEEEechhhhhh
Confidence            4566677778888899998863210 11348899999999999988874321          1246888888888763  


Q ss_pred             HHHHhhhcceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecc
Q 017569          168 EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA  246 (369)
Q Consensus       168 ~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a  246 (369)
                      ...++..|..+..+...+.....+.+.+++++.+ +++++.+++.+|.||...|+++++++|+++..    ++++|+|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~----~~~~~vDa~  175 (382)
T d2bkwa1         100 ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSP----ETFFVVDAV  175 (382)
T ss_dssp             HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCT----TSEEEEECT
T ss_pred             hhhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhcccccc----ceeeeeecc
Confidence            3455667888777765544457788888887765 68899999999999999999999999988722    599999999


Q ss_pred             cccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc--c---ccCccCCC-----------
Q 017569          247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV--F---HINYLGSD-----------  310 (369)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~--~---~~~y~~~~-----------  310 (369)
                      ++.+..       +++++..++|.+++++|||+++|+|+|+++++++... ....  .   ...|....           
T Consensus       176 qs~g~~-------pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (382)
T d2bkwa1         176 CSIGCE-------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMD-YALNDSKNGHVHGYFSSLRRWTPIMENYE  247 (382)
T ss_dssp             TTTTTS-------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHH-HHTCHHHHCCCSCSTTCHHHHHHHHHHHH
T ss_pred             cccccc-------cccccccCeeEEeecccccCcCCCchhhhhccHHHHh-hhhhcccCCCcccchhhhhhhhhhhhccc
Confidence            988766       4666667999999999999999999999999864211 0000  0   01111100           


Q ss_pred             CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       311 ~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      .......+|.+.....++..+|+.+..+|+..+  ++.++++++++.+.+.
T Consensus       248 ~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~  298 (382)
T d2bkwa1         248 AGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG  298 (382)
T ss_dssp             TTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Confidence            001112368888788899999999999999888  8888999999998763

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.8e-20  Score=174.21  Aligned_cols=239  Identities=12%  Similarity=0.049  Sum_probs=182.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHH
Q 017569           27 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIA  105 (369)
Q Consensus        27 ~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la  105 (369)
                      +|..++|.-+.+....+..+.+.     |..+||+.+.|.++ |+.+.+++.++++.+.+.|....|..+|++++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~a~~-----~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~   77 (382)
T d1u08a_           3 IPQSKLPQLGTTIFTQMSALAQQ-----HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTE   77 (382)
T ss_dssp             CCCCSCCCCCCCHHHHHHHHHHH-----TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred             CchhhCCCCCCcHHHHHHHHhcc-----CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Confidence            46667888887766655555433     45578888888654 4678899988888777778788899999999999999


Q ss_pred             HHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC
Q 017569          106 HLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE  185 (369)
Q Consensus       106 ~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~  185 (369)
                      +.+|.+.+.  +..+++|+|+++++.+++.++.+.             ++.|++++++++.+...+...|..+..+++++
T Consensus        78 ~~~g~~~~~--~~~I~vt~G~~~al~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  142 (382)
T d1u08a_          78 RLYGYQPDA--DSDITVTAGATEALYAAITALVRN-------------GDEVICFDPSYDSYAPAIALSGGIVKRMALQP  142 (382)
T ss_dssp             HHHSCCCCT--TTTEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCT
T ss_pred             HHhCCCCCC--CceEEeccchHHHHHHHHhhcccc-------------cceEEEecccccchhhhhhhccccceeccccc
Confidence            999987632  234899999999999999887653             57899999999999999999999988898887


Q ss_pred             CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc
Q 017569          186 GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD  262 (369)
Q Consensus       186 ~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~  262 (369)
                      +++.+|++++++++.+++++++++.|+||||.+.+   +++|+++|+++      +++++.|..|.........+.....
T Consensus       143 ~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~------~~~ii~d~~~~~~~~~~~~~~~~~~  216 (382)
T d1u08a_         143 PHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH------EIFVISDEVYEHINFSQQGHASVLA  216 (382)
T ss_dssp             TTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS------CCEEEEECTTTTCBCCSSCCCCGGG
T ss_pred             ccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccc------cceeeeecchhhccccccccccccc
Confidence            77899999999999999999999999999999965   56677777778      9999999998764432111111111


Q ss_pred             c--cCCCCcEEEEcCccCCCCCCCeEEEEEe
Q 017569          263 F--RLPLVKSINVSGHKYGLVYAGVGWVVWR  291 (369)
Q Consensus       263 ~--~~~~~Dsi~~~~hK~l~~p~g~g~l~~~  291 (369)
                      .  ...++-.+...+.|++..++++|+++..
T Consensus       217 ~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~  247 (382)
T d1u08a_         217 HPQLRERAVAVSSFGKTYHMTGWKVGYCVAP  247 (382)
T ss_dssp             SHHHHTTEEEEEEHHHHTTCGGGCCEEEECC
T ss_pred             cccccCcEEEEeeccccccCCcccchhhhcc
Confidence            1  1223333443456676677999999863

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.3e-19  Score=168.96  Aligned_cols=200  Identities=9%  Similarity=0.017  Sum_probs=153.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.+++......|....+ .++++++.+++++.+|.+.+.   ..+++|+|+++++..++.++.++      
T Consensus        12 ~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~---~~i~it~G~~~~l~~~~~~l~~~------   81 (361)
T d1d2fa_          12 ATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDS---QTVVYGPSVIYMVSELIRQWSET------   81 (361)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCG---GGEEEESCHHHHHHHHHHHSSCT------
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCc---ceEEEeCCHHHHHHHHhhhcccc------
Confidence            34578899999988766666665556 679999999999999987532   46999999999998888887542      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCC---C
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFE---D  220 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~---~  220 (369)
                             +++|++++|+|..+..+++..|..++.++.+  .+++.+|++++++.+.+ ++++++++.|+||||.+-   .
T Consensus        82 -------gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~  154 (361)
T d1d2fa_          82 -------GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDE  154 (361)
T ss_dssp             -------TCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTH
T ss_pred             -------ccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhh
Confidence                   4789999999999999999999999888875  34578999999999854 788999999999999874   4


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CC-CCcEEEEcCcc-CCCCCCCeEEEEEeC
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LP-LVKSINVSGHK-YGLVYAGVGWVVWRT  292 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~-~~Dsi~~~~hK-~l~~p~g~g~l~~~~  292 (369)
                      +++|+++|+++      ++++++|++|..+...  .. ....+. .. .-..+..++-| ++....+.|++++..
T Consensus       155 ~~~i~~~~~~~------~~~lI~De~y~~~~~~--~~-~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~  220 (361)
T d1d2fa_         155 LEIMADLCERH------GVRVISDEIHMDMVWG--EQ-PHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIEN  220 (361)
T ss_dssp             HHHHHHHHHHT------TCEEEEECTTTTCBCS--SS-CCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred             hhhhhhhhhhh------heeeeecccccccccc--cc-cccccccccccccccccccccccccccccceeeecch
Confidence            88999999999      9999999999875531  11 111111 11 22234444555 445567889988754

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=4.1e-19  Score=167.67  Aligned_cols=263  Identities=11%  Similarity=-0.002  Sum_probs=178.2

Q ss_pred             CccccccccC-CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           57 RLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        57 ~~~l~~~~~~-~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      .+||+.+.|. ++++.+.+++.+++... ..|....+..+|+++    +++.+++++     ..+++|+|+++++..++.
T Consensus        27 ~I~ls~g~p~~~~p~~i~~al~~~l~~~-~~Y~~~~G~~elr~a----iA~~~~~~~-----~~Iiit~G~~~al~~~~~   96 (368)
T d1v2da_          27 AVNLGQGFPSNPPPPFLLEAVRRALGRQ-DQYAPPAGLPALREA----LAEEFAVEP-----ESVVVTSGATEALYVLLQ   96 (368)
T ss_dssp             CEECCCCSCSSCCCHHHHHHHHHHTTTS-CSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESSHHHHHHHHHH
T ss_pred             CEEecCCCCCCCCCHHHHHHHHHHhhcc-cCCCCCcCCHHHHHH----HHhhcccCC-----cceeeccchHHHHHHHhh
Confidence            4566666665 34578899998888653 345555677788776    666778876     348999999999999888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                      ++..+             ++.|+++.++|..+...++..|..++.++++  .+++.+|+++|+++++++++++++++|+|
T Consensus        97 ~l~~~-------------~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~N  163 (368)
T d1v2da_          97 SLVGP-------------GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMN  163 (368)
T ss_dssp             HHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCT
T ss_pred             ccccc-------------cccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCC
Confidence            87542             4689999999999999999999998888874  35689999999999999999999999999


Q ss_pred             CcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEE
Q 017569          214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVV  289 (369)
Q Consensus       214 ~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~  289 (369)
                      |||.+-+   +++|+++|+++      ++++++|++|+.....  .+....... ......+...+.|++.....+|+++
T Consensus       164 PtG~~~~~~~l~~l~~~a~~~------~i~ii~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~  235 (368)
T d1v2da_         164 PTGLVFGERELEAIARLARAH------DLFLISDEVYDELYYG--ERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIV  235 (368)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBSS--SCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHc------CCeeeechhhhhhccc--ccccccccccccccceeeccccccccccccccccc
Confidence            9999965   88899999999      9999999999865432  111111111 2223333333557777778899987


Q ss_pred             EeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHh-hHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-VIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       290 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~-G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ..+ +.. ..+.........        ++. ......+..++.....+ -++++  ...++.+++.+.|++.|+
T Consensus       236 ~~~-~~~-~~~~~~~~~~~~--------~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~  299 (368)
T d1v2da_         236 GPK-EFM-PRLAGMRQWTSF--------SAP-TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGL  299 (368)
T ss_dssp             CCT-TTH-HHHHHHHHHHTS--------SCC-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccc-ccc-chhhhhhhcccc--------ccc-cccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCc
Confidence            643 332 121110000000        111 11111122233322222 23444  567888899999998875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.81  E-value=7.3e-19  Score=168.58  Aligned_cols=219  Identities=13%  Similarity=0.076  Sum_probs=161.9

Q ss_pred             CCccccccccCC-----ChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCC---CCCCCeEEeCCc
Q 017569           56 PRLNLASFVTTW-----MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVAD---DKTAVGVGTVGS  126 (369)
Q Consensus        56 p~~~l~~~~~~~-----~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~---~~~~~~~~t~Gg  126 (369)
                      +.++|+.+.|..     +++.+.+.+.++++.. ...|....|..+|++++.+|+.+.++...+.   -....+++|+|+
T Consensus        31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~  110 (412)
T d1bw0a_          31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG  110 (412)
T ss_dssp             CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHH
T ss_pred             CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEeccc
Confidence            346776665532     2356677777776543 3456677789999999999999987543211   012368999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcE
Q 017569          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTIC  205 (369)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~  205 (369)
                      ++|+.+++.++.++             ++.|++++|+|..+...++..|++++.+|+++ +++.+++++|++++.+++++
T Consensus       111 ~~al~~~~~~l~~~-------------Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~  177 (412)
T d1bw0a_         111 SHGILMAITAICDA-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKL  177 (412)
T ss_dssp             HHHHHHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEE
T ss_pred             ccchhhhhhhhhcc-------------ccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccc
Confidence            99999999887653             57999999999999999999999999999964 45899999999999999999


Q ss_pred             EEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-c-cCC-CCcEEEE-cCcc-
Q 017569          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-F-RLP-LVKSINV-SGHK-  277 (369)
Q Consensus       206 v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~-~~~-~~Dsi~~-~~hK-  277 (369)
                      ++++.|+||||.+   +.+++|+++|+++      ++++++|++|..+......+..... . ... ....+++ ++.| 
T Consensus       178 ~~l~np~NPtG~~~~~~~~~~i~~~~~~~------~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~  251 (412)
T d1bw0a_         178 LIVTNPSNPCGSNFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKN  251 (412)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred             cccccccccccccchhhhccccccccccC------CeeeechhhHHHhccCCCCCccccccccccccccccccccccCcc
Confidence            9999999999998   4588899999999      9999999999876542111110000 0 011 1223333 3445 


Q ss_pred             CCCCCCCeEEEEEeCC
Q 017569          278 YGLVYAGVGWVVWRTK  293 (369)
Q Consensus       278 ~l~~p~g~g~l~~~~~  293 (369)
                      ++..++.+|++++.+.
T Consensus       252 ~~~~G~RvG~~~~~~~  267 (412)
T d1bw0a_         252 LVVPGWRLGWLLYVDP  267 (412)
T ss_dssp             TSCGGGCCEEEEEECT
T ss_pred             CccCCCCcccccccch
Confidence            5667899999998754

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=5.3e-18  Score=162.16  Aligned_cols=312  Identities=13%  Similarity=0.084  Sum_probs=208.2

Q ss_pred             ccccccccchhHhhhCCCCCCCCCCCCHHHHHHHHHHhhhhcCCCCccc-c-ccccCCChHHHHHHHH--HHhcc-CCCC
Q 017569           12 EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL-A-SFVTTWMEPECDKLVM--ASINK-NYVD   86 (369)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~l~~~~~~~~~p~~~l-~-~~~~~~~~~~v~~~~~--~~~~~-n~~~   86 (369)
                      ++++++|+++|-.-.-.+..+|+ +.++.++++.+..+...+.+-..+| + +.++...++.+.+++.  +.++. .+.+
T Consensus        21 ~s~~dl~~~IP~~~~~~~~~lp~-~~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyq   99 (437)
T d1wyua1          21 ASLEDLFAHLPKEILSPPIDLPE-PLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQ   99 (437)
T ss_dssp             SSTGGGGTTSCGGGSSCCCCCCC-CCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCS
T ss_pred             CCHHHHHHhccHHHhcCCCCCCC-CCCHHHHHHHHHHHHhCCCCcCccccCcccCCceeCHHHHHHHhChhhhhhCCCcc
Confidence            46788998877533223445664 4799999999999877653221121 2 2233344566655443  34544 3567


Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      ++.++|.-++-.+.+.+++++.|++..      ......|..|...++..+++..           ++.+++++...|++
T Consensus       100 pE~sQG~Lq~l~e~q~~l~eltGmd~~------n~s~~~ga~a~~~~~~~~~~~~-----------~~~~~~v~~~~~p~  162 (437)
T d1wyua1         100 PEVSQGVLQATFEYQTMIAELAGLEIA------NASMYDGATALAEGVLLALRET-----------GRMGVLVSQGVHPE  162 (437)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHTSSEE------CSCBSSHHHHHHHHHHHHHHHH-----------TCCEEEEETTSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCcc------ccCchHHHHHHHHHHHHHHhhh-----------cccccccccccChH
Confidence            777889989999999999999999951      2333466666777777665531           13578888888876


Q ss_pred             HH----HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEE
Q 017569          167 WE----KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH  242 (369)
Q Consensus       167 ~~----~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~  242 (369)
                      ..    ..+...|++++.+|.+++  ..+.++    +++++.+|++++||+. |.++++++|++++++.      |.+++
T Consensus       163 ~~~v~~t~a~~~g~~vv~v~~~~~--~~~~~~----~~~~~Aavmi~~Pnt~-G~~ed~~~i~~~~h~~------G~l~~  229 (437)
T d1wyua1         163 YRAVLRAYLEAVGAKLLTLPLEGG--RTPLPE----VGEEVGAVVVQNPNFL-GALEDLGPFAEAAHGA------GALFV  229 (437)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCBTT--BCCCCC----CCTTEEEEEEESSCTT-SBCCCHHHHHHHHHHT------TCEEE
T ss_pred             HhhhhhhhcccceeeEEeeecccc--cchhhh----hccceeEEEEcccccc-ccccchHHHHHHhhhc------cceEE
Confidence            43    445677999999998753  333322    5678999999999876 9999999999999999      99888


Q ss_pred             eecccccccccccCCCccccccCCCCcEEEEcCccCC----CCCCCeEEEEEeCCCCcccccccc-----cCccCCC---
Q 017569          243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG----LVYAGVGWVVWRTKDDLPDELVFH-----INYLGSD---  310 (369)
Q Consensus       243 vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l----~~p~g~g~l~~~~~~~~~~~~~~~-----~~y~~~~---  310 (369)
                      +|+..-....  +.+  +-+   .++|.+..+.|+++    +++++.|++.++++ +. +.+...     .+..+..   
T Consensus       230 ~~ad~~al~~--l~~--Pg~---~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~-l~-r~lPgrivg~s~d~~G~~~~~  300 (437)
T d1wyua1         230 AVADPLSLGV--LKP--PGA---YGADIAVGDGQSLGLPMGFGGPHFGFLATKKA-FV-RQLPGRLVSETVDVEGRRGFI  300 (437)
T ss_dssp             EECCTTGGGT--BCC--HHH---HTCSEEEEECTTTTCCCGGGCSCCEEEEECGG-GG-GGCCSCCEEEEEBTTSCEEEE
T ss_pred             eeechhhhhc--ccc--ccc---cccceEeeccceeccccCCCcCccccccccch-hh-ccccccccccccccCCcccce
Confidence            8876432211  221  122   38999999955552    33355699998763 21 121110     0000000   


Q ss_pred             ------CC------CccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          311 ------QP------TFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       311 ------~~------~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                            .+      -..--||-.+..++..|+++..+|.+|++++  ++..+|+|++++|.+.+.++
T Consensus       301 l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~  367 (437)
T d1wyua1         301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR  367 (437)
T ss_dssp             ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             eecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee
Confidence                  00      0001277778788899999999999999999  99999999999999875443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.80  E-value=1.4e-18  Score=164.06  Aligned_cols=266  Identities=9%  Similarity=-0.077  Sum_probs=179.6

Q ss_pred             ccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        60 l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      |++-.|...++.|.+++.    ....+. .++...++.+++++.+++++|++.+    ...+++.|||+++..++..+..
T Consensus        21 l~~PGP~~v~~~Vl~am~----~~~~~h-r~~ef~~i~~~~r~~l~~ll~~~~~----~~i~~~g~gT~~~~~~~~~~~~   91 (377)
T d1vjoa_          21 LLGPGPSNAHPSVLQAMN----VSPVGH-LDPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVE   91 (377)
T ss_dssp             ECSSSCCCCCHHHHHHHS----SCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCC
T ss_pred             eecCCCCCCCHHHHHHhC----cCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCC----eEEEEcCcHHHHHHHHHHhccc
Confidence            334334445676766542    222221 3567888899999999999999752    3577778899999888877644


Q ss_pred             HHHHHHHhcCCCCCCCeEEecCCCcchH--HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCccc
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE  217 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~  217 (369)
                      .             +..+++....|.+.  ...+...+.....+....+....+.+......+++++++.+++.+|.+|.
T Consensus        92 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~  158 (377)
T d1vjoa_          92 P-------------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGA  158 (377)
T ss_dssp             T-------------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             c-------------ccccceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeecccee
Confidence            2             45677766666653  33444556666666655433333334444455668999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       218 ~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      +.|+++|+++||++      ++.+++|++++.+..       +.+++..++|.++.++|||+++|.|+|+++.++.. +.
T Consensus       159 ~~~i~~i~~~~~~~------g~~~~vDa~~~~g~~-------~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~-~~  224 (377)
T d1vjoa_         159 RQPLEGVGELCREF------GTLLLVDTVTSLGGV-------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRA-IE  224 (377)
T ss_dssp             ECCCTTHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHH-HH
T ss_pred             eechhhhhhhhhhc------cceEEEecchhhhhh-------hhcccccccceeeecccccccCCCEEEEecchhhH-Hh
Confidence            99999999999999      999999999986655       35666668999999999999999999999886531 11


Q ss_pred             cccccccCccCCC----------CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          298 DELVFHINYLGSD----------QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       298 ~~~~~~~~y~~~~----------~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ........+....          .......++........+-.++..+..+|...+  +..+++.++++.|.+.|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~  300 (377)
T d1vjoa_         225 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGL  300 (377)
T ss_dssp             HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCc
Confidence            1000000000000          011112234444444555566666777888887  888899999999998775

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=3e-19  Score=169.86  Aligned_cols=272  Identities=13%  Similarity=0.028  Sum_probs=189.6

Q ss_pred             cCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        53 ~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      .|...++|+.+.|..+ ++.+.+++.++. .+...|....|..+|++++.+++.+..|.+.+.   ..+++|+|+++++.
T Consensus        26 ~g~~vi~l~~G~p~~~~p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~---~~I~it~G~~~~l~  101 (389)
T d2gb3a1          26 RGVRIHHLNIGQPDLKTPEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAIL  101 (389)
T ss_dssp             TTCEEEECSSCCCCSCCCTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHHH
T ss_pred             cCCCEEECCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCccc---ceEEeccccccccc
Confidence            4555577777777644 456778877654 345666667789999999999999998987532   45899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeC
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG  211 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~  211 (369)
                      .++.++.++             ++.|+++.|.|+.+...+...|+.++.++.+.+.+..+.+.+...+.+++++++++.|
T Consensus       102 ~~~~~l~~~-------------gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP  168 (389)
T d2gb3a1         102 FSFAVIANP-------------GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP  168 (389)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred             ccccccccC-------------CCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCC
Confidence            988887553             4789999999999999999999999999987655677777788888888999999999


Q ss_pred             CCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          212 STLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       212 ~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      +||||.+   +.+++|.++|+++      +++++.|.+|+.....  ...... .......-.+...+.|++...+.+|+
T Consensus       169 ~NPtG~~~s~~~~~~i~~~a~~~------~~~iI~De~y~~~~~~--~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~  240 (389)
T d2gb3a1         169 CNPTGVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVFR--GEFASALSIESDKVVVIDSVSKKFSACGARVGC  240 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCS--SCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred             CccccccchHHHHHHHHhhcccC------CEEEEEeccccccccc--cccccccccccccccccccccccccCcccceee
Confidence            9999998   4588999999999      9999999999875541  111111 11122333333335666766789999


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHh--cHhhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~l--g~~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      ++..++... ..... .....         .+.+   .+.+.++...+  ..+-++++  +..++.+++.+.|++.|..+
T Consensus       241 ~~~~~~~i~-~~~~~-~~~~~---------~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  306 (389)
T d2gb3a1         241 LITRNEELI-SHAMK-LAQGR---------LAPP---LLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKR  306 (389)
T ss_dssp             EECSCHHHH-HHHHH-HHHHS---------CCCC---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eeccchhHH-HHHhh-hhhcc---------cccc---ccccccccccccccchhcccccccccccchhhhhhhhhhcccc
Confidence            987543221 11100 00000         0111   12222222223  33344544  67788889999999988754

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.2e-18  Score=164.87  Aligned_cols=221  Identities=15%  Similarity=0.011  Sum_probs=170.6

Q ss_pred             hhhhcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCch
Q 017569           49 ELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS  127 (369)
Q Consensus        49 ~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt  127 (369)
                      .....|++.++|+.+.|..+ ++.+.+++.++++.....|....|..+|++++.+++.+..|.+.+.   ...++|+|++
T Consensus        22 ~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~---~~i~~t~G~~   98 (375)
T d1o4sa_          22 ALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP---DQVVVTNGAK   98 (375)
T ss_dssp             HHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG---GGEEEESHHH
T ss_pred             HHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc---ccccccCcHH
Confidence            33345777788888777643 5778888888887766667777789999999999999999987632   5689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEE
Q 017569          128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICV  206 (369)
Q Consensus       128 ~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v  206 (369)
                      +|+..++.++.++             ++.|++++|+|+.+...+...|..+..+++++ +.+.+|.+.++....++++++
T Consensus        99 ~al~~~~~~l~~~-------------gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (375)
T d1o4sa_          99 QALFNAFMALLDP-------------GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAV  165 (375)
T ss_dssp             HHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEE
T ss_pred             HHHHHHHHHHhCC-------------CCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEE
Confidence            9999999888653             46899999999999999999999988888764 458889999999988899999


Q ss_pred             EEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCCCCcEEEEcCccCCC-C
Q 017569          207 AAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-V  281 (369)
Q Consensus       207 ~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~Dsi~~~~hK~l~-~  281 (369)
                      +++.|+||||.+   +.+++|+++|+++      +++|+.|++|+......- +...... ....--.+..+.-|.++ .
T Consensus       166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~------~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~l~  238 (375)
T d1o4sa_         166 LINSPNNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMT  238 (375)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBCSSC-CCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred             EEeCCCCCccCCCCHHHHHHHHHhHHHc------CCceehHhhhcccccccc-ccccccccCCCCCEEEEeechhhccCC
Confidence            999999999998   4578889999999      999999999986543110 1111111 11111234456788664 6


Q ss_pred             CCCeEEEEEeC
Q 017569          282 YAGVGWVVWRT  292 (369)
Q Consensus       282 p~g~g~l~~~~  292 (369)
                      .+.+|+++..+
T Consensus       239 G~R~G~~~~~~  249 (375)
T d1o4sa_         239 GWRVGYLISSE  249 (375)
T ss_dssp             GGCCEEEECCH
T ss_pred             ccccccccccc
Confidence            78999998643

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.80  E-value=8.9e-19  Score=167.08  Aligned_cols=226  Identities=14%  Similarity=0.118  Sum_probs=166.1

Q ss_pred             HHHHHhhhhcCCCCccccccccCCC-hHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEE
Q 017569           44 QVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG  122 (369)
Q Consensus        44 ~~l~~~~~~~~~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~  122 (369)
                      +.+.......++..++|+.+.|.++ ++.+.+++.++++.+.+.|.  ++..+|++++++|+++.+|.+.+.   ..+++
T Consensus        20 ~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~---~~I~v   94 (394)
T d1c7na_          20 DLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQT---DWIIN   94 (394)
T ss_dssp             HHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCG---GGEEE
T ss_pred             HHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCC---cceEe
Confidence            3333333334556677777777754 57789999999887655553  356789999999999999988632   46999


Q ss_pred             eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc--CCccccCHHHHHHHHh
Q 017569          123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD  200 (369)
Q Consensus       123 t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~L~~~i~  200 (369)
                      |+|+++++.++++++.++             ++.|+++.+.++.+.......|...+.++..  +..+.+|.+.++.++.
T Consensus        95 t~G~~~al~~~~~~~~~p-------------gd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~  161 (394)
T d1c7na_          95 TAGVVPAVFNAVREFTKP-------------GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK  161 (394)
T ss_dssp             ESSHHHHHHHHHHHHCCT-------------TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred             eccchhhhhhhhcccccc-------------ccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhc
Confidence            999999999999987653             5789999999999999999999988877763  2347789999988875


Q ss_pred             -hcCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc--CCCCcEEEEc
Q 017569          201 -ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR--LPLVKSINVS  274 (369)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~--~~~~Dsi~~~  274 (369)
                       ++++++++++|+||||.+.   .+++|+++|+++      +++|++|++|..+..+...........  ....-.+..+
T Consensus       162 ~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~------~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  235 (394)
T d1c7na_         162 DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS------DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTA  235 (394)
T ss_dssp             CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHS------SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEEC
T ss_pred             cccceEEEecccccccceeccHHHhhhhhcccccc------ceeEeccccccccccCCccccchhhhhcccccceeeccc
Confidence             4689999999999999994   477899999999      999999999987654211100000100  1112233445


Q ss_pred             CccC-CCCCCCeEEEEEeCC
Q 017569          275 GHKY-GLVYAGVGWVVWRTK  293 (369)
Q Consensus       275 ~hK~-l~~p~g~g~l~~~~~  293 (369)
                      .-|. ...++++|++++.++
T Consensus       236 ~SK~~~~~G~R~g~~~~~~~  255 (394)
T d1c7na_         236 PSKTFNIAGMGMSNIIIKNP  255 (394)
T ss_dssp             SHHHHTCGGGCCEEEECCCH
T ss_pred             ccccccccccccccccccCh
Confidence            5665 456788899987654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=1.4e-18  Score=164.15  Aligned_cols=186  Identities=14%  Similarity=0.117  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      ++-.+++.+.++++...  .++...++|+.    +++++|.+.       .+++++||.|+.+++.++.-          
T Consensus        12 ~~~~~~~~~~~~~~~~~--~G~~v~~~E~~----la~~~g~~~-------ai~~~sgt~Al~~al~al~~----------   68 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWIT--TGPKNQELEAA----FCRLTGNQY-------AVAVSSATAGMHIALMALGI----------   68 (376)
T ss_dssp             HHHHHHHHHHHHHTCCS--SSHHHHHHHHH----HHHHHCCSE-------EEEESCHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHhcCCCc--CCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHhCC----------
Confidence            44457777888766443  46777788866    999999986       78999999999999887521          


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHH
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~  229 (369)
                        ..+++|++|..+|.+...++...|+.++.++++++++.+|+++|+++|+++|++|+++   +..|.+.|+++|.++|+
T Consensus        69 --~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~~~~i~~i~~  143 (376)
T d1mdoa_          69 --GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGE  143 (376)
T ss_dssp             --CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHH
T ss_pred             --CCCCEEEEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCCCeEEEEe---CCCCCccchhHHHHHHH
Confidence              1247999999999999999999999999999998789999999999999999988754   57899999999999999


Q ss_pred             HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCC
Q 017569          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD  295 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~  295 (369)
                      ++      +++++.|+|++.+..  ...   ......+...+++.++|++.++.| |++++.+.++
T Consensus       144 ~~------~i~vIeD~a~a~g~~--~~~---~~~g~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l  197 (376)
T d1mdoa_         144 RY------GIPVIEDAAHATGTS--YKG---RHIGARGTAIFSFHAIKNITCAEG-GIVVTDNPQF  197 (376)
T ss_dssp             HH------TCCBCEECTTCTTCE--ETT---EETTSSSEEEEECCTTSSSCSSSC-EEEEESCHHH
T ss_pred             hc------CceEEeccchhccCe--eCC---eecccccCccccCCCcCCCCCCCC-CEEEEechhH
Confidence            99      999999999986543  111   111123456677788999976554 7777766543

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.79  E-value=1.9e-18  Score=165.99  Aligned_cols=212  Identities=16%  Similarity=0.123  Sum_probs=161.7

Q ss_pred             CCccccccccCCC-hHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           56 PRLNLASFVTTWM-EPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        56 p~~~l~~~~~~~~-~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ..+||+.+.|..+ ++.+.+++.++++..   .+.|....|..+|++++.+|+++.+|.+.+.  ...+++|+|+++|+.
T Consensus        27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p--~~~I~it~G~~~al~  104 (418)
T d2r5ea1          27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP--MTEVLVTVGAYEALY  104 (418)
T ss_dssp             CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT--TTSEEEESHHHHHHH
T ss_pred             CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--cceEEEcCCCchhhh
Confidence            3467877777644 467889998888653   3446666789999999999999999988532  245999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhhc
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDEN  202 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~~  202 (369)
                      .++.++.++             ++.|+++.++|+.+...+...|..++.|+++++         .+.++.+++.+...++
T Consensus       105 ~~~~~l~~~-------------gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (418)
T d2r5ea1         105 ATIQGHVDE-------------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK  171 (418)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT
T ss_pred             hhhhhcccc-------------ccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhcc
Confidence            999888653             579999999999999999999999999998542         3578899999998889


Q ss_pred             CcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccc-cCC--CCcEE-EEcC
Q 017569          203 TICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLP--LVKSI-NVSG  275 (369)
Q Consensus       203 ~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~--~~Dsi-~~~~  275 (369)
                      +++++++.|+||||.+.+   +++|+++|+++      +++++.|++|..+...   +.....+ .+.  .-..+ ..+.
T Consensus       172 ~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~------~~~iI~De~y~~~~~~---~~~~~s~~~~~~~~~~~i~~~S~  242 (418)
T d2r5ea1         172 TKMIIINTPHNPLGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVFE---PFEHIRICTLPGMWERTITIGSA  242 (418)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT---TCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             ccceecCCcCccccccccHHHHHHHhhhhhcC------CeeeecccchhhhccC---CCccccccccccccceeeeeecC
Confidence            999999999999999844   77789999999      9999999999875541   1111111 111  11222 2244


Q ss_pred             ccC-CCCCCCeEEEEEe
Q 017569          276 HKY-GLVYAGVGWVVWR  291 (369)
Q Consensus       276 hK~-l~~p~g~g~l~~~  291 (369)
                      -|. .+.+..+|+++..
T Consensus       243 SK~~~~pGlRiG~~~~~  259 (418)
T d2r5ea1         243 GKTFSLTGWKIGWAYGP  259 (418)
T ss_dssp             HHHTTCGGGCCEEEESC
T ss_pred             CccccCCCccccccccc
Confidence            455 4577999998763

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.78  E-value=2.1e-17  Score=156.52  Aligned_cols=259  Identities=8%  Similarity=-0.002  Sum_probs=181.1

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..++.|.+++.    ....+ -.++...++.+++++.+++++|++..    ...+++.|||+++..++..+..+      
T Consensus        27 ~~~~~V~~Am~----~~~~~-hr~~ef~~i~~~~r~~L~~ll~~~~~----~~i~~~gsgT~a~ea~~~~l~~~------   91 (388)
T d2ch1a1          27 NCSKRVLTAMT----NTVLS-NFHAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLEE------   91 (388)
T ss_dssp             CCCHHHHHHTT----SCCCC-TTCHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHhC----cCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCC----eEEEEcCcHHHHHHHHHHHhccc------
Confidence            34577766542    22211 13567788889999999999999741    23556678899998888776432      


Q ss_pred             hcCCCCCCCeEEecCCCcchHH--HHHhhhcceeEEEeccCCccccCHHHHHHHHh-hcCcEEEEeeCCCCcccCCCHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKL  223 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~-~~~~~v~~~~~~~~tG~~~~l~~  223 (369)
                             +.++++....|++..  ..+..++...+.++.... ...+.+.+++++. .+++++.+++.+|.+|...|+++
T Consensus        92 -------~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~  163 (388)
T d2ch1a1          92 -------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG  163 (388)
T ss_dssp             -------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred             -------cccccccccccccccchhhhhhhcccccccccccc-cccchhhhhhhhccCCcceeeeeecccccccccchhh
Confidence                   457777777776644  345566888887877654 4667776666654 57899999999999999999999


Q ss_pred             HHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccc
Q 017569          224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH  303 (369)
Q Consensus       224 I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  303 (369)
                      |+++|+++      +++++||++++.+..       +++++..++|.++.++|||+++|.|.|+++.+.+... ......
T Consensus       164 i~~~~~~~------~~~~~vD~~ss~g~~-------pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~-~~~~~~  229 (388)
T d2ch1a1         164 VGQICHQH------DCLLIVDAVASLCGV-------PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALD-VIRNRR  229 (388)
T ss_dssp             HHHHHHHT------TCEEEEECTTTBTTB-------CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHH-HHHTCS
T ss_pred             hcchhccc------cceeeeeeeeccccc-------ccchhccCceEEEEccccccCCCCeEEEEeccHHHHH-hhhccc
Confidence            99999999      999999999987665       3556656899999999999999999999998753211 000000


Q ss_pred             c-------------CccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          304 I-------------NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       304 ~-------------~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      .             .+...........++........+..+++.++.+|....  +......+++..+...+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d2ch1a1         230 TKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD  303 (388)
T ss_dssp             SCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccc
Confidence            0             000000111123356666667788888888888887766  6667777777777765543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.78  E-value=8.6e-19  Score=170.61  Aligned_cols=237  Identities=11%  Similarity=-0.078  Sum_probs=152.2

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHH-HHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhh-cc
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA-GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-EV  176 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~a-l~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~-G~  176 (369)
                      +.++.+|+++|++.       .+++++||++++++ +.++..             .+++||++...|.|+...+..+ +.
T Consensus        70 eae~~~A~~~ga~~-------a~f~~~Gtt~~n~a~i~a~~~-------------~gd~Vi~~~~~H~Sv~~~~~~l~~~  129 (462)
T d1c4ka2          70 AAEKHAARVYNADK-------TYFVLGGSSNANNTVTSALVS-------------NGDLVLFDRNNHKSVYNSALAMAGG  129 (462)
T ss_dssp             HHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHhCCCe-------EEEECCchHHHHHHHHHHhcC-------------CCCeEEecccchHHHHHHHHHHhcC
Confidence            34556999999985       67777666555454 544433             2579999999999998876654 44


Q ss_pred             eeEEE--eccCCc-------cccCHHHHHH---------HHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCC
Q 017569          177 ELKEV--KLEEGY-------YVMNPVKAVE---------LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD  238 (369)
Q Consensus       177 ~v~~v--~~~~~~-------~~~d~~~L~~---------~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~  238 (369)
                      .++++  ++++..       ..++.+.+++         ++..+++.+++...+|..|.+.|+++|+++|+++      +
T Consensus       130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~------g  203 (462)
T d1c4ka2         130 RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHL------C  203 (462)
T ss_dssp             EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGG------B
T ss_pred             CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHc------C
Confidence            44443  444321       1334444433         3344577777778888899999999999999999      9


Q ss_pred             ceEEeecccccccccccCCCcccccc--------CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCC
Q 017569          239 TPIHVDAASGGFIAPFLYPDLEWDFR--------LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD  310 (369)
Q Consensus       239 ~~l~vD~a~~~~~~~~~~~~~~~~~~--------~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~  310 (369)
                      +++|+|+|++.+..  ..+..+....        ..++|++++++||+++++.+++++..++..................
T Consensus       204 ~~l~vD~A~~~~~~--~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~  281 (462)
T d1c4ka2         204 DYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNS  281 (462)
T ss_dssp             SEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHH
T ss_pred             CEEEEechhhcccc--ccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHh
Confidence            99999999987665  2222111111        2357999999999998888877777665322111000000000000


Q ss_pred             CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCCcc
Q 017569          311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYFYD  364 (369)
Q Consensus       311 ~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~~~  364 (369)
                       ......++.+.....++-++...+..++..++  +..++++++++++++.+.+..
T Consensus       282 -~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~  336 (462)
T d1c4ka2         282 -FNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR  336 (462)
T ss_dssp             -HHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             -hhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence             00111234455556677777777766655555  899999999999999876643

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.1e-16  Score=154.71  Aligned_cols=322  Identities=9%  Similarity=-0.018  Sum_probs=215.6

Q ss_pred             cccccccccchhHhhhCC-CCCCCCCCCCHHHHHHHHHHhhhhcCCC--Cc-cccccccCCChHHHHHHHHHHhcc-CCC
Q 017569           11 REILSSTFASRYVRAAIP-RFKMPDNSMPKEAAYQVINDELMLDGNP--RL-NLASFVTTWMEPECDKLVMASINK-NYV   85 (369)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~i~~~l~~~~~~~~~p--~~-~l~~~~~~~~~~~v~~~~~~~~~~-n~~   85 (369)
                      -+++.++|..+|-.-++. ...+|+  .|+.|+++++..+...|.+.  .+ .++++ .....|.+.+.+.+.+.. .++
T Consensus        19 ~~si~el~~~IP~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~-~~hy~P~v~~~~~~~~TaYTPY   95 (471)
T d1wyub1          19 VKAVPKAEDLIPKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSC-TMKYNPKLHEEAARLFADLHPY   95 (471)
T ss_dssp             CSSCCCHHHHSCGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTT-CCCCCCHHHHHHHHTTSSCCTT
T ss_pred             CCcchhhhhhCCHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccc-cCccCcchhhhHHHHHhccCCC
Confidence            357888998888654443 357774  89999999999988766432  22 23322 323345566666655543 466


Q ss_pred             CC-CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCc
Q 017569           86 DM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ  164 (369)
Q Consensus        86 ~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h  164 (369)
                      ++ +.++|.-+.-.+.+.++++|+|++..      ......|..|...|+..++.....    .|.......++.+...|
T Consensus        96 QPaEiSQG~LQalfEfQtmi~eLTGMdva------NaS~yDGatA~aeA~~ma~r~~~~----~~~~~~~~~~~~~~~~~  165 (471)
T d1wyub1          96 QDPRTAQGALRLMWELGEYLKALTGMDAI------TLEPAAGAHGELTGILIIRAYHED----RGEGRTRRVVLVPDSAH  165 (471)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHHHHHHH----TTCTTTCCEEEEETTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCcc------ccccchHHHHHHHHHHHHHHHhhh----cccccccccccCCcccc
Confidence            65 66889888889999999999999951      233345555555555554432211    11111223455566566


Q ss_pred             chHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEee
Q 017569          165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD  244 (369)
Q Consensus       165 ~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD  244 (369)
                      ..........+..++.++.+.. +..|.+.+..+..+++.+++++.|++.-+..++.+++++++++.      +..+++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~------g~~~~~~  238 (471)
T d1wyub1         166 GSNPATASMAGYQVREIPSGPE-GEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEA------GVQLYYD  238 (471)
T ss_dssp             THHHHHHHHTTCEEEEECBCTT-SSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHH------TCEEEEE
T ss_pred             cceeeeeecccceeeccccccc-ccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhc------ccccccc
Confidence            6666666777888888887664 78999999999888888999999988844445799999999999      9888888


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCC-----CCeEEEEEeCCCCccccccccc-----Ccc---CCCC
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-----AGVGWVVWRTKDDLPDELVFHI-----NYL---GSDQ  311 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~~-----~y~---~~~~  311 (369)
                      ++.-........|   .   ..++|.++++.|+.++.|     ++.|++.++++ +. +.+....     .+.   ....
T Consensus       239 ~~~~~~~~~l~~p---~---~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~-~~-R~~PGRiV~~~~~~~~~~~~RE  310 (471)
T d1wyub1         239 GANLNAIMGWARP---G---DMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRP  310 (471)
T ss_dssp             GGGGGGTTTTCCH---H---HHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCT
T ss_pred             ccchhhhhhcccc---C---cccccccccccccccccccccccccccceeehhh-hh-ccCCCceecCCCccccccCCCc
Confidence            7644322211111   1   237888999999976444     67788888653 21 2221110     010   0111


Q ss_pred             CCcc--ccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          312 PTFT--LNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       312 ~~~~--l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      +...  -.||-++..++..+++|..+|.+|++++  +|+++|+|++++|++.|
T Consensus       311 qhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G  363 (471)
T d1wyub1         311 KSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG  363 (471)
T ss_dssp             TCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            1111  1277888889999999999999999999  99999999999998755

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=3.6e-18  Score=160.16  Aligned_cols=257  Identities=12%  Similarity=0.072  Sum_probs=178.7

Q ss_pred             cCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      |...++.|.+++...    ..++ .++...++.+++++.++++++.++     ...+++.|||+++..++..+..+    
T Consensus         8 P~~v~~~V~~am~~~----~~~h-r~~~f~~i~~~~~~~l~~ll~~~~-----~~i~~~gsgT~a~e~~~~nl~~~----   73 (348)
T d1iuga_           8 PVRLHPKALEALARP----QLHH-RTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFAP----   73 (348)
T ss_dssp             SCCCCHHHHHHHHSC----CCCT-TSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCCT----
T ss_pred             CCCCCHHHHHHhcCC----CCCC-CCHHHHHHHHHHHHHHHHHhCCCC-----CEEEEeCchHHHHHHHHHhcccc----
Confidence            334457776665432    2222 346777888899999999999875     24788999999998888876432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHH
Q 017569          145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~  222 (369)
                               +++|++....+++  +...++.+|..+..++.+.. -.+++++   ...++++.|++++.+|.+|.+.|++
T Consensus        74 ---------g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g-~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~  140 (348)
T d1iuga_          74 ---------GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPED---VAKEGYAGLLLVHSETSTGALADLP  140 (348)
T ss_dssp             ---------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTT---SCCSSCSEEEEESEETTTTEECCHH
T ss_pred             ---------cccceeecchHHHHHHHHHHHhcCcccccccccCC-Ccccccc---ccccCCCeeEEEecchhhhhhccHH
Confidence                     3567777767665  55666778888888887543 2334332   2355788999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      +|+++|++++.    +.++++|++++.+..       +++++..++|.+..++|||+++|+|.|+++++++. + +.+..
T Consensus       141 ~i~~~~~~~~~----~~l~~vDavss~g~~-------~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~-l-e~~~~  207 (348)
T d1iuga_         141 ALARAFKEKNP----EGLVGADMVTSLLVG-------EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-L-ERLKP  207 (348)
T ss_dssp             HHHHHHHHHCT----TCEEEEECTTTBTTB-------CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-H-HTCCC
T ss_pred             HHHHHHHhhhc----cceeechhhhccccc-------ccccccccCCEEEeccccceecCCceeeeeechHH-H-hhhcc
Confidence            99999999822    578999999886655       34555558999999999999999999999998642 1 11111


Q ss_pred             ccCccCC-----CCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCC
Q 017569          303 HINYLGS-----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 ~~~y~~~-----~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~  361 (369)
                      ...|+.-     ........+|.+...++++..+|+.+..+|.+.. ++....+.++..+++.|+
T Consensus       208 ~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl  272 (348)
T d1iuga_         208 RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGL  272 (348)
T ss_dssp             CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhh
Confidence            1111110     0011123468888878888899988866665555 555555666666666664

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.7e-18  Score=163.27  Aligned_cols=214  Identities=13%  Similarity=0.075  Sum_probs=163.6

Q ss_pred             CCCccccccccCCC-hHHHHHHHHHHhccC--CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHH
Q 017569           55 NPRLNLASFVTTWM-EPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM  131 (369)
Q Consensus        55 ~p~~~l~~~~~~~~-~~~v~~~~~~~~~~n--~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~  131 (369)
                      ++.++|+.+.|..+ ++.+.+++.+++...  ...|....|..+|++++.+++.+.+|.+.+.  ..++++|+|+++|+.
T Consensus        25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~--~~~I~it~G~~~al~  102 (418)
T d1w7la_          25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP--LRNVLVTVGGYGALF  102 (418)
T ss_dssp             SCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH--HHHEEEESHHHHHHH
T ss_pred             CCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc--ccceeeccCcHHHHH
Confidence            45578887777644 567889999888754  2456667789999999999999999987521  135899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-----------CccccCHHHHHHHHh
Q 017569          132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVD  200 (369)
Q Consensus       132 ~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~L~~~i~  200 (369)
                      +++.++.++             ++.|+++.++++.+...+...|++++.++.++           +++.+|.+++.....
T Consensus       103 ~~~~~l~~~-------------g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  169 (418)
T d1w7la_         103 TAFQALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT  169 (418)
T ss_dssp             HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC
T ss_pred             HHHHhhccC-------------CceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc
Confidence            998887653             57999999999999999999999988887642           347889999999888


Q ss_pred             hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc--ccccCCC-CcEEEEc
Q 017569          201 ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPL-VKSINVS  274 (369)
Q Consensus       201 ~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~-~Dsi~~~  274 (369)
                      +++++++++.|+||||.+   +.+++|+++|+++      +++++.|.+|......  .+...  ..+.... =-.+..+
T Consensus       170 ~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~------~v~vI~De~Y~~l~~~--~~~~~~~~~~~~~~~~~i~~~S  241 (418)
T d1w7la_         170 SRTKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVYD--GHQHISIASLPGMWERTLTIGS  241 (418)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEE
T ss_pred             ccccceeccCcCCcccccccHHHHHHHHHHHHhc------CCCchhhhhhHHhhcC--CCCCCCHHHccccccccceecc
Confidence            899999999999999998   4588899999999      9999999999876541  11111  1111111 1233445


Q ss_pred             Ccc-CCCCCCCeEEEEEe
Q 017569          275 GHK-YGLVYAGVGWVVWR  291 (369)
Q Consensus       275 ~hK-~l~~p~g~g~l~~~  291 (369)
                      ..| ++....++|+++..
T Consensus       242 ~SK~~~~pG~RvG~~v~~  259 (418)
T d1w7la_         242 AGKTFSATGWKVGWVLGP  259 (418)
T ss_dssp             HHHHTTCGGGCCEEEECC
T ss_pred             cCccccCCCCcccccccc
Confidence            666 45567999999874

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.7e-18  Score=161.74  Aligned_cols=210  Identities=15%  Similarity=0.051  Sum_probs=158.6

Q ss_pred             CCccccccccCC---ChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           56 PRLNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        56 p~~~l~~~~~~~---~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      ..++|+.+.|.+   +.+.+.+++.++++..   ...|....|..+|++++.+|+++.+|.+..  +...+++|+|++++
T Consensus        39 ~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~--~~~~I~it~G~~~a  116 (420)
T d1vp4a_          39 DAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGL--DEDNLIFTVGSQQA  116 (420)
T ss_dssp             TCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSC--CGGGEEEEEHHHHH
T ss_pred             CcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC--CHHHeEeccchhhh
Confidence            346888887753   3456677777776543   345666778999999999999999988631  12468999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh--------
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------  201 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~--------  201 (369)
                      +.+++.++.++             ++.|++++++|..+...++..|+.++.+|.+++  .+|++.++..+.+        
T Consensus       117 l~~~~~~~~~~-------------Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~  181 (420)
T d1vp4a_         117 LDLIGKLFLDD-------------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD--GMDLNVLERKLSEFDKNGKIK  181 (420)
T ss_dssp             HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT--EECHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHhhhcc-------------ccccccccccccchhHHHHHHhhhccccccccc--ccccchhhhhhhhhHHHhhcc
Confidence            99988887542             579999999999999999999999999999864  5788877765532        


Q ss_pred             -cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--cccccCCCCcEEEEcC
Q 017569          202 -NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSG  275 (369)
Q Consensus       202 -~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~~~~Dsi~~~~  275 (369)
                       .+.+++++.|+||||.+.   .+++|+++|+++      ++++++|.+|..+..  ..+..  .........-.+..++
T Consensus       182 ~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~------~i~ii~De~y~~l~~--~~~~~~~~~~~~~~~~~i~~~s~  253 (420)
T d1vp4a_         182 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRY--EGETVDPIFKIGGPERVVLLNTF  253 (420)
T ss_dssp             GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBC--SSCCCCCHHHHHCTTTEEEEEES
T ss_pred             ccceeeEecCCCCccchhhhhhhhhhhhhhhhcc------cccccccchhhhccc--cCcccccccccccccceeEEecc
Confidence             234667889999999984   578999999999      999999999987543  11111  1111133444556678


Q ss_pred             ccCCCCCCCeEEEEE
Q 017569          276 HKYGLVYAGVGWVVW  290 (369)
Q Consensus       276 hK~l~~p~g~g~l~~  290 (369)
                      .|+++.++.+|+++.
T Consensus       254 sk~~~~G~RiG~~~~  268 (420)
T d1vp4a_         254 SKVLAPGLRIGMVAG  268 (420)
T ss_dssp             TTTTCGGGCEEEEEC
T ss_pred             ccccccccccccccc
Confidence            999988899999876

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.75  E-value=1.8e-17  Score=158.10  Aligned_cols=215  Identities=16%  Similarity=0.084  Sum_probs=154.0

Q ss_pred             CCCC-ccccccccCC---ChHHHHHHHHHHhccC---CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCc
Q 017569           54 GNPR-LNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS  126 (369)
Q Consensus        54 ~~p~-~~l~~~~~~~---~~~~v~~~~~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Gg  126 (369)
                      .+|. +||+.+.|.+   +.+.+.+++.++++..   ...|....|..++++++.+|+.+.+|.+.+   ...+++|+|+
T Consensus        27 ~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~---~~~I~it~G~  103 (403)
T d1wsta1          27 ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMS---KVEIMTVAGS  103 (403)
T ss_dssp             TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCT---TCEEEEESSH
T ss_pred             CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC---hHHeeecccc
Confidence            3454 6787777654   3355677777766432   345666778999999999999999998753   2468999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCcccc-CHHHHH-HHH---hh
Q 017569          127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM-NPVKAV-ELV---DE  201 (369)
Q Consensus       127 t~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~-d~~~L~-~~i---~~  201 (369)
                      ++++.+++.++.++             ++.|++++|+|..+...+..+|++++.|+.+++.... +..... +..   ++
T Consensus       104 ~~al~~~~~~l~~~-------------gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  170 (403)
T d1wsta1         104 QQALDLIGRVFLNP-------------GDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKR  170 (403)
T ss_dssp             HHHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHhhc-------------CCccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchhhhhcccc
Confidence            99999988887542             4789999999999999999999999999987632211 122212 222   22


Q ss_pred             cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccc-ccCCCCcEEEEcCcc
Q 017569          202 NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHK  277 (369)
Q Consensus       202 ~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~Dsi~~~~hK  277 (369)
                      .+.+++++.++||||.+.   .+++|+++|+++      ++++++|++|+.+..... +..... .....-..++.+..|
T Consensus       171 ~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~------~~~li~De~y~~l~~~~~-~~~~~~~~~~~~~~i~~~S~SK  243 (403)
T d1wsta1         171 VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY------DFLIVEDGPYSELRYSGE-PTPPIKHFDDYGRVIYLGTFSK  243 (403)
T ss_dssp             CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBCSSC-CCCCGGGGCSSSCEEEEEESTT
T ss_pred             ccccccccccCCCCCccCCHHHHHHHHHHHHhc------CceeccccchhheecCCC-CCCcccccCCCCcEEEEccccc
Confidence            356777889999999984   477899999999      999999999987544211 111111 112233455667999


Q ss_pred             CCCCCCCeEEEEEe
Q 017569          278 YGLVYAGVGWVVWR  291 (369)
Q Consensus       278 ~l~~p~g~g~l~~~  291 (369)
                      +++.+.++|+++..
T Consensus       244 ~~~~G~RiG~~i~~  257 (403)
T d1wsta1         244 ILAPGFRIGWVAAH  257 (403)
T ss_dssp             TTCGGGCCEEEEEC
T ss_pred             eecCcccccccccc
Confidence            99877899999874

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.74  E-value=2.2e-17  Score=159.03  Aligned_cols=185  Identities=12%  Similarity=0.049  Sum_probs=137.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      |....|..+|++++.+|+.+.+|..... +...+++|+|+++++..++.++.++             ++.|+++.|+|..
T Consensus        79 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~-~~e~Ivit~G~~~al~~~~~~l~~~-------------Gd~Vlv~~P~y~~  144 (428)
T d1iaya_          79 FQDYHGLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGATGANETIIFCLADP-------------GDAFLVPSPYYPA  144 (428)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHHHHHHHHHHHHCCT-------------TCEEEEESSCCTT
T ss_pred             CcCCcchHHHHHHHHHHHHHHhCCCCCC-ChhhEEEcCCHHHHHHHHHHHhCCC-------------CCEEEEccCCchH
Confidence            4455688999999999999998854321 1235899999999999998887553             5789999999999


Q ss_pred             HHHHHhh-hcceeEEEeccC-CccccCHHHHHHHHh------hcCcEEEEeeCCCCcccCCC---HHHHHHHHHHhhhcc
Q 017569          167 WEKFARY-FEVELKEVKLEE-GYYVMNPVKAVELVD------ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEET  235 (369)
Q Consensus       167 ~~~~~~~-~G~~v~~v~~~~-~~~~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~---l~~I~~l~~~~~~~~  235 (369)
                      +...+.. .|++++.|+++. +++.+|+++++++++      .++++++++.|+||||.+.+   +++|+++|+++    
T Consensus       145 ~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~----  220 (428)
T d1iaya_         145 FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH----  220 (428)
T ss_dssp             HHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccC----
Confidence            9887775 488999999874 468999999887654      25678999999999999854   78899999999    


Q ss_pred             CCCceEEeecccccccccccCCCcc----------ccccCCCCcEEEEcCccCC-CCCCCeEEEEEeCC
Q 017569          236 GWDTPIHVDAASGGFIAPFLYPDLE----------WDFRLPLVKSINVSGHKYG-LVYAGVGWVVWRTK  293 (369)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~----------~~~~~~~~Dsi~~~~hK~l-~~p~g~g~l~~~~~  293 (369)
                        ++++++|++|+.+...  .+...          .......--.+..+..|.+ ..+..+|+++..++
T Consensus       221 --~~~vI~De~Y~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~  285 (428)
T d1iaya_         221 --NIHLVCDEIYAATVFD--TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND  285 (428)
T ss_dssp             --TCEEEEECTTGGGCCS--SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred             --cEEEEecccccccccC--cccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc
Confidence              9999999999875541  11110          0000111124566788954 45688999987543

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.74  E-value=8.6e-17  Score=152.73  Aligned_cols=253  Identities=11%  Similarity=0.033  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      .+-.+.+.+.++++......++...++|++    +++++|.++       .+.+++||.|+.+++.++.-          
T Consensus        13 ~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~----~a~~~g~~~-------~v~~~SGt~Al~lal~~l~~----------   71 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWWRMGGDEVNSFERE----FAAHHGAAH-------ALAVTNGTHALELALQVMGV----------   71 (384)
T ss_dssp             HHHHHHHHHHHHTSCCBTTTCSHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHcCCeeecCCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHcCC----------
Confidence            344667788887764333457788888877    899999986       79999999999999987521          


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHH
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~  229 (369)
                        ..+++|++|..++.+...++...|+.+++++++++++.+|++.+++.++++|++|+   +++..|...|+++|.++|+
T Consensus        72 --~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d~~~i~~~~~  146 (384)
T d1b9ha_          72 --GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISA  146 (384)
T ss_dssp             --CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred             --CCCCEEEEeccccccccccccccccccccccccccccccchhhhcccccccccccc---cccccccccccccchhhhh
Confidence              12479999999999999999999999999999987799999999999999998875   6788899999999999999


Q ss_pred             HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-cccCccC
Q 017569          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-FHINYLG  308 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~~~~y~~  308 (369)
                      ++      +++++.|+|++.+..  ......-.  ...+..++++..|.+.++.| |++++.+++....... ....+..
T Consensus       147 ~~------~i~lieD~a~a~ga~--~~g~~~g~--~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~~~~~~~~~~g~~~  215 (384)
T d1b9ha_         147 DT------GVPLLQDAAHAHGAR--WQGKRVGE--LDSIATFSFQNGKLMTAGEG-GAVVFPDGETEKYETAFLRHSCGR  215 (384)
T ss_dssp             HH------TCCBCEECTTCTTCE--ETTEEGGG--SSSCEEEECCTTSSSCSSSC-EEEEECTTCHHHHHHHHHHTBTTC
T ss_pred             hh------hhhhhhhhceecccc--cCCEecCc--ccccceeccccccccccccc-chhhhhhHHHHHHHHHHHhcCCCC
Confidence            99      999999999986554  22111111  33466777889999876554 7777777655321100 1111000


Q ss_pred             CC-CCC--ccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          309 SD-QPT--FTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       309 ~~-~~~--~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      .. ...  ....|...-...+.+...+..|  +.+.+.  +..++++++.+.|.+...
T Consensus       216 ~~~~~~~~~~~~G~n~rms~l~Aaig~~qL--~~ld~~~~~R~~~~~~y~~~L~~~~~  271 (384)
T d1b9ha_         216 PRDDRRYFHKIAGSNMRLNEFSASVLRAQL--ARLDEQIAVRDERWTLLSRLLGAIDG  271 (384)
T ss_dssp             CTTCSSCCCCSCCCBCBCBHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             ccccccccccccccccccccchhhhhhhhh--hhcccchhhhhhhhhhhhhhhhcccc
Confidence            00 000  0111111111122222233333  234444  778899999999987543

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.73  E-value=1.9e-17  Score=158.02  Aligned_cols=229  Identities=14%  Similarity=0.021  Sum_probs=157.1

Q ss_pred             HHHHHHHhhhhcCCCC-ccccccc---cC---CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 017569           42 AYQVINDELMLDGNPR-LNLASFV---TT---WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVA  113 (369)
Q Consensus        42 i~~~l~~~~~~~~~p~-~~l~~~~---~~---~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~  113 (369)
                      |+..+ +.+..+.||. +||+.+.   +.   +..+.++++....++... ..|....|..+|++++.+++.+..+....
T Consensus        15 i~~~~-~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~   93 (401)
T d7aata_          15 ILGVT-EAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK   93 (401)
T ss_dssp             HHHHH-HHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHH-HHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccC
Confidence            44433 3344566664 6887764   11   223778888877776544 35777789999999999998877664432


Q ss_pred             CCCCCCeEEeC--CchH---HHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCc
Q 017569          114 DDKTAVGVGTV--GSSE---AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGY  187 (369)
Q Consensus       114 ~~~~~~~~~t~--Ggt~---a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~  187 (369)
                      +   ...+.+.  +|+.   ++...+.++.+             .+++|++++|+|+.+...++..|++++.+|+. +++
T Consensus        94 ~---~~i~~~~~~~~~g~~~~~~~~~~~l~~-------------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~  157 (401)
T d7aata_          94 S---GRYVTVQGISGTGSLRVGANFLQRFFK-------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKT  157 (401)
T ss_dssp             T---TCEEEEEEEHHHHHHHHHHHHHHHHCT-------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTT
T ss_pred             c---CceEEeccchHHHHHHHHHHhhHhhcC-------------CCceEEEecCCCcchhhHHHHcCCeEEEEecccccc
Confidence            1   1122222  2222   33333333333             25799999999999999999999999999984 456


Q ss_pred             cccCHHHHHHHHh---hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--
Q 017569          188 YVMNPVKAVELVD---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--  259 (369)
Q Consensus       188 ~~~d~~~L~~~i~---~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--  259 (369)
                      +.+|.+.+++.+.   +++++++++.|+||||.+   +.+++|+++|+++      +++++.|.+|......-..+..  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~  231 (401)
T d7aata_         158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR------NLLAYFDMAYQGFASGDINRDAWA  231 (401)
T ss_dssp             TEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHH
T ss_pred             ccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc------eEEEEEeccchhhhcCCcccchhh
Confidence            8899999988875   467899999999999998   4588999999999      9999999999876541000000  


Q ss_pred             ccccc--CCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          260 EWDFR--LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       260 ~~~~~--~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .....  ....-.+...+.|+++..+..|+++....
T Consensus       232 ~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~  267 (401)
T d7aata_         232 LRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             hhhhhhhhcccceeEeccccceeeccccceeecchH
Confidence            00111  22344445557778888899999998653

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.73  E-value=5.6e-17  Score=151.48  Aligned_cols=253  Identities=9%  Similarity=0.008  Sum_probs=175.8

Q ss_pred             CChHHHHHHHHHHhcc-CC-CCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NY-VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~-~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ..++.+.+++.+.+.+ .. +++     .......++|.-+.+...++||+..      ..+=..+|+.||+.++.++.+
T Consensus        34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~------anVqp~SGs~An~av~~all~  107 (405)
T d1kl1a_          34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLE  107 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc------ceeeccCchHHHHHHHHHhcC
Confidence            3457888888877743 21 111     1223567899889999999999985      234556899999998888866


Q ss_pred             HHHHHHHhcCCCCCCCeEEecC---CCcchHHHHHhhh--cceeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCC
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGA---NVQVCWEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~---~~h~s~~~~~~~~--G~~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (369)
                      +             +++|+..+   -.|.+........  ..++...+++++++.+|.+++++.+.+ +|++|++-  .+
T Consensus       108 p-------------GD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G--~S  172 (405)
T d1kl1a_         108 H-------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA--AS  172 (405)
T ss_dssp             T-------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC--CS
T ss_pred             C-------------CCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEec--cc
Confidence            3             46777644   4566544333333  345666788877799999999998875 78887643  33


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ..-..-|++++.++|++.      +.++++|+++-.+.+  ....++..  ++.+|.+|.++||.+.+|.| |+++++++
T Consensus       173 ~y~r~~d~~~~reIad~v------ga~l~~D~aH~~GLI--a~g~~~~P--~~~aDvvt~tThKtlrGPrg-g~I~~~~~  241 (405)
T d1kl1a_         173 AYPRIIDFAKFREIADEV------GAYLMVDMAHIAGLV--AAGLHPNP--VPYAHFVTTTTHKTLRGPRG-GMILCQEQ  241 (405)
T ss_dssp             SCCSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCS--TTTCSEEEEESSSTTCCCSC-EEEEECHH
T ss_pred             ccccccChHHHHHHHhhh------CCEEecchhhHhhhh--hhhhcCCh--hhhhhheeccccccccCCCC-ceEEecch
Confidence            334556899999999999      999999999765554  11111222  35799999999999999987 67777542


Q ss_pred             CCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       .. ..+ ...-+       +.++|+.....+++...+++......+++.  +..+||+.|++.|.+.|+
T Consensus       242 -~~-~~i-~~avf-------Pg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~  301 (405)
T d1kl1a_         242 -FA-KQI-DKAIF-------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF  301 (405)
T ss_dssp             -HH-HHH-HHHHT-------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -hH-HHH-HhhhC-------cccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence             11 111 01111       223355556667888888887655566666  999999999999999886

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=4e-17  Score=154.07  Aligned_cols=161  Identities=16%  Similarity=0.072  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCe-EEec-CCCcchHHHHHhh
Q 017569           96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN-IVTG-ANVQVCWEKFARY  173 (369)
Q Consensus        96 le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~-Vi~s-~~~h~s~~~~~~~  173 (369)
                      ++.++++...+.++.++.    ...++++||++|++.++.++..              ++. ++++ .+.|.++..++++
T Consensus        51 ~~~~l~~~~~~~~~~~~~----e~~~~~~~~~~a~~~~l~al~~--------------~~~vi~~~~~~~~~~~~~~~~l  112 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDEN----DKCVGFNRTSSAILATILALKP--------------KKVIHYLPELPGHPSIERSCKI  112 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHHCC--------------SEEEEECSSSSCCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHccCCCc----cEEEEeCCHHHHHHHHHHHhCC--------------CCEEEEecCCCcchhHHHHHHh
Confidence            444555667777777652    3488999999999988877532              234 4454 5799999999999


Q ss_pred             hcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCc-ccCCCHHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       174 ~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~t-G~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                      .|+++  ++.+      |+++|+++|+++|++|++++|+|++ +.+.++++|+++|+++      ++|+++|++|+.+..
T Consensus       113 ~g~~~--v~~~------d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~------~~~~i~De~y~~~~~  178 (366)
T d2aeua1         113 VNAKY--FESD------KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVR  178 (366)
T ss_dssp             TTCEE--EEES------CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHH
T ss_pred             cCCeE--ECCC------CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccC------cEEEEEecCcccccc
Confidence            99864  4433      7899999999999999999998864 4678999999999999      999999999987654


Q ss_pred             cccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeC
Q 017569          253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       253 ~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~  292 (369)
                      .....   ......++|.++.|.||++. +++.|+++.++
T Consensus       179 ~~~~~---~~~~~~~~di~~~S~sK~~~-g~~~G~i~~~~  214 (366)
T d2aeua1         179 LLFNQ---PPALKLGADLVVTSTDKLME-GPRGGLLAGKK  214 (366)
T ss_dssp             HHTTC---CCHHHHTCSEEEEETTSSSS-SCSCEEEEEEH
T ss_pred             ccccC---CCHhhcCceEEEeccccccc-ccceeEEEecH
Confidence            21111   01112368999999999874 56789988764

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=7.8e-17  Score=151.91  Aligned_cols=222  Identities=14%  Similarity=0.037  Sum_probs=163.7

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++.|.+.       .+++++|+.|+..++.++...             ++.|+++...|.....
T Consensus        58 nPT~~~LE~~----la~LEg~~~-------a~~~~SGmaAi~~~l~~l~~~-------------Gd~vl~~~~~Yg~t~~  113 (392)
T d1gc0a_          58 NPTLNLLEAR----MASLEGGEA-------GLALASGMGAITSTLWTLLRP-------------GDEVLLGNTLYGCTFA  113 (392)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSCCSHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCcc-------eeehhhHHHHHHHHHHhhccC-------------CCeeecccccchhhhh
Confidence            3566677766    899998875       788999999998888887542             5789998887766544


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .    +..+|+++.+++..      |+++++++|+++|++|++.+|+||+..+.||++|+++||++      ++.++||.
T Consensus       114 l~~~~~~~~Gi~~~~~d~~------d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~------g~~~vvDn  181 (392)
T d1gc0a_         114 FLHHGIGEFGVKLRHVDMA------DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDN  181 (392)
T ss_dssp             HHHHTGGGGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEEC
T ss_pred             hhhhhhccCCcccccCCcc------CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhc------CCEEEEec
Confidence            4    34568888887643      68999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +++..+.  ..|   +++   |+|.+.-|..|++++...  .|+++.++.......+.......+          .  ..
T Consensus       182 T~atP~~--~~P---l~~---GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G----------~--~~  241 (392)
T d1gc0a_         182 TYCTPYL--QRP---LEL---GADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG----------A--VL  241 (392)
T ss_dssp             TTTHHHH--CCG---GGG---TCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTC----------C--CC
T ss_pred             CccCccc--cCh---HHh---CCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccC----------C--cC
Confidence            9875443  222   333   899999999999876543  366666542211101000000111          1  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|..++.+..-..+-.++.++|..+++.|++++.+++-+|
T Consensus       242 ~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  285 (392)
T d1gc0a_         242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHY  285 (392)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred             ChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEee
Confidence            36778888877765555433999999999999999998887655

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.70  E-value=3.6e-16  Score=147.44  Aligned_cols=222  Identities=14%  Similarity=0.083  Sum_probs=164.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++.+.|.+.       .+++++|+.|+..++.++...             ++.|+++...|.....
T Consensus        62 nPT~~~LE~~----la~LEgg~~-------a~~~sSGmaAi~~~l~~ll~~-------------Gd~vi~~~~~Yg~t~~  117 (397)
T d1y4ia1          62 NPTTDALEKK----LAVLERGEA-------GLATASGISAITTTLLTLCQQ-------------GDHIVSASAIYGCTHA  117 (397)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSSCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCcc-------ceeehHHHHHHHHHHhhccCC-------------CCeeeeecccccccch
Confidence            3566677766    888988875       788999999998888887553             5799999988866444


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .    +..+|+++.+++..      |++.++++|+++|++|++-.|+||+..+.|+++|+++|+++      +++++||.
T Consensus       118 ~~~~~l~~~Gi~~~~vd~~------d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~------gi~~vvDn  185 (397)
T d1y4ia1         118 FLSHSMPKFGINVRFVDAG------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDN  185 (397)
T ss_dssp             HHHTHHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEEC
T ss_pred             hhhcccCCCceEeeccCCC------CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcC------CceEEecC
Confidence            3    34569998888643      57999999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++..+.   +.  +++   .|+|.+.-|.-|++++....  |+++.+++ .+............         |.  ..
T Consensus       186 T~atP~~---~~--Pl~---~GaDivihS~TKyi~Ghsdvl~G~v~~~~~-~~~~~r~~~~~~~~---------G~--~l  245 (397)
T d1y4ia1         186 TFMSPYC---QQ--PLQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFVGLKDIT---------GG--CM  245 (397)
T ss_dssp             TTTCTTT---CC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTHHHHTT---------CC--CC
T ss_pred             cccCccc---Cc--chh---cCCCEEEEehhhhcCCCcceeeeccCCCHH-HHHHHHHHHHHhCc---------CC--cC
Confidence            9875433   21  223   28999999999998765433  66665543 22111000000010         11  22


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       246 ~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  289 (397)
T d1y4ia1         246 SPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYY  289 (397)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeC
Confidence            46788888887766555533999999999999999999887654

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.70  E-value=6.6e-16  Score=144.69  Aligned_cols=247  Identities=11%  Similarity=0.021  Sum_probs=159.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+++.++++.- ..| ..++..+|+++    +++.+|+++     ..+++++|+++++...+.+..        
T Consensus        35 ~~p~~~~~a~~~~~~~~-~~Y-p~~~~~~Lr~a----ia~~~~v~~-----~~I~~~~g~~~~~~~~~~~~~--------   95 (355)
T d1lc5a_          35 GMPVSVKRALIDNLDCI-ERY-PDADYFHLHQA----LARHHQVPA-----SWILAGNGETESIFTVASGLK--------   95 (355)
T ss_dssp             CCCHHHHHHHHHTGGGG-GSC-CCTTCHHHHHH----HHHHHTSCG-----GGEEEESSHHHHHHHHHHHHC--------
T ss_pred             CCCHHHHHHHHHHHHHh-ccC-CCCChHHHHHH----HHHHhCCCH-----HHEEecccHHHHHHHHHhhhc--------
Confidence            34567888888776543 223 23445555555    777889886     348888888888776554431        


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCC---HH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VK  222 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~---l~  222 (369)
                             ++.+++..+.+..+.......+++++.+|++. +++.++ +++++++.+++++|+++.|+||||.+.+   +.
T Consensus        96 -------~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~  167 (355)
T d1lc5a_          96 -------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQ  167 (355)
T ss_dssp             -------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHH
T ss_pred             -------cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhh
Confidence                   34556666777788888888999999999864 335555 6677788889999999999999999855   77


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV  301 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~  301 (369)
                      +|+++|+++      ++++++|.+|..+..  .............-..+..+..|+++ .+...|+++..+. .+...+.
T Consensus       168 ~i~~~a~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~-~~~~~~~  238 (355)
T d1lc5a_         168 AIADRCKSL------NINLILDEAFIDFIP--HETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD-AAMARMR  238 (355)
T ss_dssp             HHHHHHHHH------TCEEEEECTTGGGST--TCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH-HHHHHHH
T ss_pred             hhhhhcccc------ccccccccceeeeee--ecccccccccccccceeecccccccccccccccceeccch-hhhHHHH
Confidence            888888999      999999999986543  11111111112223355667888864 6788999987542 2211111


Q ss_pred             cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH--HhhHHHHHHHHHHHhcCCCc
Q 017569          302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF--CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       302 ~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~--~~~~~a~~l~~~L~~~g~~~  363 (369)
                      .    ...   .    .+.   ..++..++...+.. +.+.+.  +..+..+++.+.|.+++.++
T Consensus       239 ~----~~~---~----~~~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (355)
T d1lc5a_         239 R----QQM---P----WSV---NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT  289 (355)
T ss_dssp             H----HSC---T----TCS---CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             h----hcC---C----ccc---cccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE
Confidence            0    000   0    111   13444555555533 234443  66778888999999876553

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.69  E-value=3e-16  Score=151.16  Aligned_cols=183  Identities=14%  Similarity=0.051  Sum_probs=137.4

Q ss_pred             CCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch
Q 017569           87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC  166 (369)
Q Consensus        87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s  166 (369)
                      |....|..+|++++.+++.+.+|..... +...+++|+|+++++..+++++.++             ++.|+++.|+|..
T Consensus        80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~-~pe~I~it~G~~~al~~~~~~l~~p-------------Gd~Vlv~~P~y~~  145 (431)
T d1m7ya_          80 FQDYHGLPAFKKAMVDFMAEIRGNKVTF-DPNHLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPG  145 (431)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTTSSCC-CGGGEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTT
T ss_pred             CcCCcCcHHHHHHHHHHHHHHhCCCCCC-CcceEEECCCHHHHHHHHHHHhcCC-------------CCEEEEeCCCchh
Confidence            4455688999999999999998854211 1246899999999999999987552             4789999999998


Q ss_pred             HHHHHhh-hcceeEEEeccC-CccccCHHHHHHHHhh------cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhcc
Q 017569          167 WEKFARY-FEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEET  235 (369)
Q Consensus       167 ~~~~~~~-~G~~v~~v~~~~-~~~~~d~~~L~~~i~~------~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~  235 (369)
                      +...+.. .|+.++.+++++ +++.+|++++++++++      ++++++++.|+||||.+-   .+++|.++|+++    
T Consensus       146 ~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~----  221 (431)
T d1m7ya_         146 FDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK----  221 (431)
T ss_dssp             HHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc----
Confidence            8888875 578888898875 4588999999988864      467899999999999984   488899999999    


Q ss_pred             CCCceEEeecccccccccccCCCccccc---c-CCC---------CcEEEEcCccCCC-CCCCeEEEEEeC
Q 017569          236 GWDTPIHVDAASGGFIAPFLYPDLEWDF---R-LPL---------VKSINVSGHKYGL-VYAGVGWVVWRT  292 (369)
Q Consensus       236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~-~~~---------~Dsi~~~~hK~l~-~p~g~g~l~~~~  292 (369)
                        ++++++|++|+.....  .+.. ..+   . ...         --.+..+..|.++ .+..+|+++..+
T Consensus       222 --~~~vI~De~Y~~~~~~--~~~~-~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~  287 (431)
T d1m7ya_         222 --GIHLISDEIYSGTAFS--SPSF-ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND  287 (431)
T ss_dssp             --TCEEEEECTTGGGCCS--SSCC-CCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC
T ss_pred             --CcceeecccccccccC--CCCC-CCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch
Confidence              9999999999875541  1110 000   0 000         0134446888775 557899998744

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.2e-16  Score=144.53  Aligned_cols=254  Identities=9%  Similarity=0.020  Sum_probs=174.2

Q ss_pred             CChHHHHHHHHHHhccC-C-CCCC--CCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKN-Y-VDMD--EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR  139 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n-~-~~~~--~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~  139 (369)
                      ..++.+.+++.+.+.+- . +.++  .+.   ...++|.-+.+...++||+...      .+-..+|+.||+.++.++.+
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a------nVqp~SGs~AN~av~~All~  110 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA------NVQPHSGSQANFAVYTALLE  110 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc------eeecccCccHHHHHHHHhcC
Confidence            34578888888776432 1 1111  122   4578998889999999999852      34456899999999998865


Q ss_pred             HHHHHHHhcCCCCCCCeEEecC---CCcchHHHHHhhhcc--eeEEEeccCCccccCHHHHHHHHhh-cCcEEEEeeCCC
Q 017569          140 KWQQKRKEQGKPYDKPNIVTGA---NVQVCWEKFARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST  213 (369)
Q Consensus       140 ~~~~~~~~~g~~~~~~~Vi~s~---~~h~s~~~~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~  213 (369)
                      +             +++|+..+   ..|.+....+...|.  +....++++ ++.+|.+++++...+ +|++|++-  .+
T Consensus       111 p-------------GD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~IDyd~l~~~a~~~kPklIi~G--~S  174 (416)
T d1dfoa_         111 P-------------GDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGG--FS  174 (416)
T ss_dssp             T-------------TCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS-SSSBCHHHHHHHHHHHCCSEEEEE--CS
T ss_pred             C-------------CCeeeeccccccccccccccccccCceEEEEecccCC-ccCccHHHHHHHHHHhccceEEec--cc
Confidence            3             46777644   345554444444443  455556665 478999999998765 88888744  34


Q ss_pred             CcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       214 ~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .....-|++++.++|++.      |.++++|+++-.+.+.  ....+..  ++.+|.++.++||.+.+|.| |++++++.
T Consensus       175 ~y~r~~d~~~~reiad~v------ga~l~~D~aH~~GLIa--~g~~~sP--~~~aDvvt~tThKtlrGPrg-giI~~~~~  243 (416)
T d1dfoa_         175 AYSGVVDWAKMREIADSI------GAYLFVDMAHVAGLVA--AGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGG  243 (416)
T ss_dssp             SCCSCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--HTSSCCC--TTTSSEEEEESSSTTCCCSC-EEEEESSC
T ss_pred             ccccccCHHHHHHHHHhc------CceEEcchhhhhccee--ccccCCc--ccccceeeeehhhcccCCCc-eEEEeccc
Confidence            445677999999999999      9999999997655541  1111122  34689999999999998887 78877643


Q ss_pred             C-CcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          294 D-DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       294 ~-~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      . .+.+.+. .+-+       +.++|..-...+++...+++......+++.  +..+||+.|++.|.+.||
T Consensus       244 ~~~~~~~i~-~avf-------Pg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~  306 (416)
T d1dfoa_         244 SEELYKKLN-SAVF-------PGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGY  306 (416)
T ss_dssp             CHHHHHHHH-HHHT-------TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhHHHHHH-hhhC-------cccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            1 1111110 0111       223345555567888888888766667666  999999999999999986

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.69  E-value=2.9e-16  Score=152.16  Aligned_cols=238  Identities=11%  Similarity=0.023  Sum_probs=153.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 017569           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (369)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~  165 (369)
                      .|..+|...+||+.    +++++|.+.       ++++++|+.||..++.++.++             +++|+.... +.
T Consensus        70 ~Y~~dpt~~~lE~~----~a~l~G~e~-------al~~~SGt~An~~a~~~l~~~-------------Gd~Vi~~~~-f~  124 (456)
T d1c7ga_          70 AYAGSENFYHLEKT----VKELFGFKH-------IVPTHQGRGAENLLSQLAIKP-------------GQYVAGNMY-FT  124 (456)
T ss_dssp             CSSSCHHHHHHHHH----HHHHHCCSE-------EEEESSHHHHHHHHHHHHCCT-------------TEEEEESSC-CH
T ss_pred             hccCCchHHHHHHH----HHHHhCCCe-------EEECCCHHHHHHHHHHHhcCC-------------CCeEecCcc-hH
Confidence            35667888888887    889999986       899999999999999887542             346665543 33


Q ss_pred             hHHHHHhhhcceeEEEecc---------CCccccCHHHHHHHHhhcC----cEEEEeeCCCCccc----CCCHHHHHHHH
Q 017569          166 CWEKFARYFEVELKEVKLE---------EGYYVMNPVKAVELVDENT----ICVAAILGSTLTGE----FEDVKLLHDLL  228 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~---------~~~~~~d~~~L~~~i~~~~----~~v~~~~~~~~tG~----~~~l~~I~~l~  228 (369)
                      +........|+.+..+.++         ...+.+|+++|+++|++++    .++++..++|..|.    .+++++|.++|
T Consensus       125 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a  204 (456)
T d1c7ga_         125 TTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMA  204 (456)
T ss_dssp             HHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHH
Confidence            4444455667776655442         2347899999999998643    47778888888763    36789999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccC---CCc-cccc------cCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLY---PDL-EWDF------RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~-~~~~------~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      +++      |+.+|+|+|...+...+..   ... ...+      ....+|++++++||.+.+|.| |+++.+++.+...
T Consensus       205 ~~~------~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~  277 (456)
T d1c7ga_         205 STY------GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSA  277 (456)
T ss_dssp             HHH------TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHH
T ss_pred             HHc------CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHH
Confidence            999      9999999997543321111   000 0000      023689999999999987766 7887766443321


Q ss_pred             ccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       299 ~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                      . .......++.. .   .+...+....++...+.....  ...+ +..++++||+++|++.|+-
T Consensus       278 ~-r~~~~~~~g~~-~---~g~~~~~~~~a~a~~l~e~~~--~~~l~~r~~~~~~L~e~L~~~g~~  335 (456)
T d1c7ga_         278 A-KELVVVYEGMP-S---YGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLREAGVP  335 (456)
T ss_dssp             H-HHHHHHHTCCT-T---TTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             H-HHhccccCCCc-c---cchhhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhccCC
Confidence            1 11011111111 1   133344444555555554322  2223 6678889999999998763

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.68  E-value=1.3e-16  Score=152.79  Aligned_cols=238  Identities=15%  Similarity=0.117  Sum_probs=158.4

Q ss_pred             HHHHHHHhhhhcCCCC-ccccccc---c---CCChHHHHHHHHHHhccC--CCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 017569           42 AYQVINDELMLDGNPR-LNLASFV---T---TWMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        42 i~~~l~~~~~~~~~p~-~~l~~~~---~---~~~~~~v~~~~~~~~~~n--~~~~~~~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      ++. +...+..+.+|. +||+.++   +   .+..+.|.++.....+..  .+.|....|..+|++++.+++.+..+.+.
T Consensus        17 i~~-l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~   95 (412)
T d1ajsa_          17 VFK-LIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPAL   95 (412)
T ss_dssp             HHH-HHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHH
T ss_pred             HHH-HHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCccc
Confidence            444 333344565665 6877763   1   122366777766554432  34467778999999999998877665432


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEec--cCCcccc
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL--EEGYYVM  190 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~--~~~~~~~  190 (369)
                      .. +....+.|.|++.++..+..++...+.      ..-..+++|++++|+|+.+...++..|+.++.++.  +++.+.+
T Consensus        96 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~  168 (412)
T d1ajsa_          96 QE-KRVGGVQSLGGTGALRIGAEFLARWYN------GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGL  168 (412)
T ss_dssp             HT-TCEEEEEEEHHHHHHHHHHHHHHHHSS------SSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEE
T ss_pred             cc-ccceeecccchhhHHHHHHHHHHHHhh------hcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccc
Confidence            11 113356677888777776665543210      00123579999999999999999999998665543  3445788


Q ss_pred             CHHHHHHHHh---hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--ccc
Q 017569          191 NPVKAVELVD---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWD  262 (369)
Q Consensus       191 d~~~L~~~i~---~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~  262 (369)
                      |.+++++.+.   +++++++++.|+||||.+   +.+++|+++|+++      +++++.|.+|..+..+-.....  ...
T Consensus       169 d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~  242 (412)
T d1ajsa_         169 DLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFASGNLEKDAWAIRY  242 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred             cHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC------CEEEEecHhhhhhhcCCcccchhhhhh
Confidence            9888877654   467899999999999999   4589999999999      9999999999876541100000  000


Q ss_pred             c-c-CCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          263 F-R-LPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       263 ~-~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      . . ....-.+...+.|+++..+++|++++...
T Consensus       243 ~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~  275 (412)
T d1ajsa_         243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK  275 (412)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             hhhhcccccccccccccccCCCCCccccccchh
Confidence            0 1 12333444457788888899999988653

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4e-16  Score=148.47  Aligned_cols=224  Identities=14%  Similarity=0.046  Sum_probs=149.7

Q ss_pred             hcCCCC-ccccccc---c---CCChHHHHHHHHHHhccC-CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEe
Q 017569           52 LDGNPR-LNLASFV---T---TWMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT  123 (369)
Q Consensus        52 ~~~~p~-~~l~~~~---~---~~~~~~v~~~~~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t  123 (369)
                      .+.+|. +||+.+.   +   .+..+.+.++..++.+.. .+.|....|..+|++++.+++.+..+....+ .....+.+
T Consensus        22 ~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~-~~~~~~~~  100 (396)
T d2q7wa1          22 ADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALIND-KRARTAQT  100 (396)
T ss_dssp             ------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEE
T ss_pred             ccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccc-cceeeecc
Confidence            344454 6777653   1   123477888887776654 3457778899999999999988766653211 11234566


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHh--
Q 017569          124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD--  200 (369)
Q Consensus       124 ~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~--  200 (369)
                      .|++.+..+++......           ..++.|++++++|+.+...++..|+.++.+|+.. +++..+...+++...  
T Consensus       101 ~~~~~~~~l~~~~l~~~-----------~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (396)
T d2q7wa1         101 PGGTGALRVAADFLAKN-----------TSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA  169 (396)
T ss_dssp             SHHHHHHHHHHHHHHHH-----------SCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHhhc-----------ccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHh
Confidence            67666665554443321           1247999999999999999999999999999853 456777777777554  


Q ss_pred             -hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccc-c-CCCCcEEEE
Q 017569          201 -ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-R-LPLVKSINV  273 (369)
Q Consensus       201 -~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~-~~~~Dsi~~  273 (369)
                       ++++++++++|+||||.+   +.+++|+++|+++      +++++.|.+|..+......+... ... . ....-.+..
T Consensus       170 ~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s  243 (396)
T d2q7wa1         170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASS  243 (396)
T ss_dssp             CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEE
T ss_pred             ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC------CeEEEEeccccccccCCccCchHhhhhhhhccccccccc
Confidence             467889999999999998   4578999999999      99999999998765410000000 000 0 122222233


Q ss_pred             cCccCCCCCCCeEEEEEeCC
Q 017569          274 SGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       274 ~~hK~l~~p~g~g~l~~~~~  293 (369)
                      .+.|+.+..+++|+++....
T Consensus       244 ~sk~~~~~G~R~G~~~~~~~  263 (396)
T d2q7wa1         244 YSKNFGLYNERVGACTLVAA  263 (396)
T ss_dssp             CTTTTTCGGGCCEEEEEECS
T ss_pred             ccccccccCCCccccccchh
Confidence            36677778899999998653

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.66  E-value=1.7e-15  Score=144.09  Aligned_cols=292  Identities=12%  Similarity=0.019  Sum_probs=185.5

Q ss_pred             HHHHHHHHHhhhhcCCCCccccccccCCChHHHHHHHHHHhccC-CCC------CCCCcchHHHHHHHHHHHHHHhCCCC
Q 017569           40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-YVD------MDEYPVTTELQNRCVNMIAHLFNTPV  112 (369)
Q Consensus        40 ~~i~~~l~~~~~~~~~p~~~l~~~~~~~~~~~v~~~~~~~~~~n-~~~------~~~~~~~~~le~~~~~~la~l~g~~~  112 (369)
                      .++.+.+.+...... ..++|-. .-+..++.+.+++...+.+- ...      |.......++|.-+.+...++||+++
T Consensus        17 ~ei~~~i~~e~~rq~-~~l~LIa-SEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~   94 (470)
T d1rv3a_          17 AEVYDIIKKESNRQR-VGLELIA-SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDP   94 (470)
T ss_dssp             HHHHHHHHHHHHHHH-SSEECCT-TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHH-cCceEec-CCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCh
Confidence            456666655544321 1133311 11244578888888777432 111      11223568999999999999999985


Q ss_pred             CCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecC---CCcchHHHH-------HhhhcceeEEEe
Q 017569          113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA---NVQVCWEKF-------ARYFEVELKEVK  182 (369)
Q Consensus       113 ~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~---~~h~s~~~~-------~~~~G~~v~~v~  182 (369)
                      +.  ....+=..+|+.||+.++.++.++             +++|+..+   -.|.+.-..       ..-...+....+
T Consensus        95 ~~--~~anVqp~SGs~An~av~~all~p-------------gD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~  159 (470)
T d1rv3a_          95 QC--WGVNVQPYSGSPANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYK  159 (470)
T ss_dssp             TT--EEEECCCSSHHHHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEEC
T ss_pred             hh--ccccccccCCccHHHHHHHHhcCC-------------CCeEeeeccccCCcccccccccCCCcccccceeEeeEEE
Confidence            21  011244458999999998888663             46776533   345443211       111234577788


Q ss_pred             ccCCccccCHHHHHHHHhh-cCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc
Q 017569          183 LEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW  261 (369)
Q Consensus       183 ~~~~~~~~d~~~L~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~  261 (369)
                      ++++++.+|.+++++...+ +|++|++-  .+.+-..-|++++.++|++.      +.++++|+++-.+.+.  ....+.
T Consensus       160 v~~~~~~IDyd~l~~~a~~~kPklIi~G--~S~y~r~~d~~~~reIad~v------ga~l~~D~aH~aGLIA--~g~~~s  229 (470)
T d1rv3a_         160 VNPDTGYIDYDRLEENARLFHPKLIIAG--TSCYSRNLDYGRLRKIADEN------GAYLMADMAHISGLVV--AGVVPS  229 (470)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEEC--CSSCCSCCCHHHHHHHHHHT------TCEEEEECTTTHHHHH--HTSSCC
T ss_pred             EecccCcccHHHHHHHHHhhCcceEeec--hhhccccCCHHHHHHHHhcc------CCeEEecchhhhhhcc--ccccCC
Confidence            8887799999999998765 78887743  33334567999999999999      9999999997655541  111122


Q ss_pred             cccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc-ccc--cccCccCCCC--CCccccCCcchhHHHHHHHHHHHhc
Q 017569          262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD-ELV--FHINYLGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLG  336 (369)
Q Consensus       262 ~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~-~~~--~~~~y~~~~~--~~~~l~~tr~~~~~l~~~~~l~~lg  336 (369)
                      .+  +.+|.+|.++||.+.+|.| |++++++...-.. ..-  ...++....+  .-+.++|......++++..+++...
T Consensus       230 Pl--~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~  306 (470)
T d1rv3a_         230 PF--EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM  306 (470)
T ss_dssp             GG--GTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT
T ss_pred             hh--heeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhc
Confidence            23  4689999999999999987 7888876411000 000  0000000000  0123456666667888888888875


Q ss_pred             HhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          337 FEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       337 ~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      ...+.+.  +..+||+.|++.|.+.|+
T Consensus       307 ~~~fk~Ya~qvv~NAk~La~~L~~~G~  333 (470)
T d1rv3a_         307 TPEFKEYQRQVVANCRALSAALVELGY  333 (470)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            5555656  999999999999999886

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.66  E-value=7.2e-16  Score=145.47  Aligned_cols=250  Identities=13%  Similarity=0.065  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 017569           70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG  149 (369)
Q Consensus        70 ~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g  149 (369)
                      .+-.+++.+.++++..  ..++...++|++    +++++|.++       .+++++||.|+.+++.++...         
T Consensus        12 ~~~~~~v~~~l~~~~~--~~G~~v~~fE~~----~~~~~g~k~-------ai~~~Sgt~Al~~al~al~~~---------   69 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQL--TQGKRSLLFEEA----LCEFLGVKH-------ALVFNSATSALLTLYRNFSEF---------   69 (371)
T ss_dssp             HHHHHHHHHHHTSSCC--SSSHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHSSCC---------
T ss_pred             HHHHHHHHHHHcCCCc--cCCHHHHHHHHH----HHHHHCcCe-------EEEEecHHHHHHHHHHHhccc---------
Confidence            4456677788876543  346778888876    899999986       799999999999998886331         


Q ss_pred             CCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHH
Q 017569          150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT  229 (369)
Q Consensus       150 ~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~  229 (369)
                       ..++++|++|..++.+...++...|+.++++++++++ .++.++++++++++|++|+++   +..|...++++|.++|+
T Consensus        70 -~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~-~~~~~~~~~~~~~~t~avi~v---h~~G~~~~~~~i~~~~~  144 (371)
T d2fnua1          70 -SADRNEIITTPISFVATANMLLESGYTPVFAGIKNDG-NIDELALEKLINERTKAIVSV---DYAGKSVEVESVQKLCK  144 (371)
T ss_dssp             -CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS-SBCGGGSGGGCCTTEEEEEEE---CGGGCCCCHHHHHHHHH
T ss_pred             -CCCCCeeecccccccccceeeeccCcccccccccccc-cccchhhhhhccchhhccccc---ccccccccccccccccc
Confidence             1234689999999999999999999999999999874 566788899999999888744   57799999999999999


Q ss_pred             HhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccc-cccCccC
Q 017569          230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-FHINYLG  308 (369)
Q Consensus       230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~~~~y~~  308 (369)
                      ++      +++++.|+|++.+..  ....  ..-....+..+++.+.|.+.+.. .|++++.+.+....... .+.....
T Consensus       145 ~~------~i~lIEDaaqa~Ga~--~~~~--~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~  213 (371)
T d2fnua1         145 KH------SLSFLSDSSHALGSE--YQNK--KVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLK  213 (371)
T ss_dssp             HH------TCEEEEECTTCTTCE--ETTE--ETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEE
T ss_pred             cc------chhhccchhhccCce--eccc--cCCcccccccccccccccccccc-ceEEEeechhhhhhccccccccccc
Confidence            99      999999999987654  2211  11113346677777899986654 47787766544321100 0101000


Q ss_pred             CC-----CCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          309 SD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       309 ~~-----~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ..     ...+..+...+-   +.+...+..|.  .+.+.  +..++++++.+.|...+.+
T Consensus       214 ~~~~~~~~~~~G~n~r~se---l~Aaigl~qL~--~l~~~~~~R~~~~~~y~~~l~~~~~~  269 (371)
T d2fnua1         214 KDFFEGEVKSIGHNFRLNE---IQSALGLSQLK--KAPFLMQKREEAALTYDRIFKDNPYF  269 (371)
T ss_dssp             SSSSCEEESSCCCBCCCCH---HHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             ccccccccccccccccccc---hhhhhhhhhhh--hccchhhhhhhhhhhhcccccccccc
Confidence            00     011111122222   22223333332  23344  7778999999999876654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.4e-15  Score=144.43  Aligned_cols=223  Identities=11%  Similarity=0.014  Sum_probs=153.3

Q ss_pred             hhhcCCCC-cccccccc-----C-CChHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 017569           50 LMLDGNPR-LNLASFVT-----T-WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV  121 (369)
Q Consensus        50 ~~~~~~p~-~~l~~~~~-----~-~~~~~v~~~~~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~  121 (369)
                      +..+.+|. +||+.+..     . +..+.+.+++.+.++... +.|....|..+|++++.+++.+..+....    ...+
T Consensus        20 ~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~----~~~~   95 (394)
T d2ay1a_          20 FRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSET----TATL   95 (394)
T ss_dssp             HHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGG----EEEE
T ss_pred             HhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhcccccccc----ccce
Confidence            34456665 68776631     1 234778888887776543 45777789999999999988766555421    2356


Q ss_pred             EeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHHHHHHh
Q 017569          122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD  200 (369)
Q Consensus       122 ~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L~~~i~  200 (369)
                      .++||+.+..+++......           ..++.|++|++.|+.+...++..|++++.+|+. ++++..+.+++++...
T Consensus        96 ~~~~~~~~~~l~~~~~~~~-----------~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~  164 (394)
T d2ay1a_          96 ATVGGTGALRQALELARMA-----------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA  164 (394)
T ss_dssp             EEEHHHHHHHHHHHHHHHH-----------CTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHhhhc-----------CCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHh
Confidence            6666666654444433221           124689999999999999999999999999985 3456777777766654


Q ss_pred             ---hcCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--cc-cccCCCCcEE
Q 017569          201 ---ENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EW-DFRLPLVKSI  271 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~-~~~~~~~Dsi  271 (369)
                         +++++++++.++||||.+-   .+++|+++|+++      +++++.|.+|..+...--.+..  .. .......-.+
T Consensus       165 ~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T d2ay1a_         165 AAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA  238 (394)
T ss_dssp             TCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred             hcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc------eEEEEEeccchhhcccccccchhhhhhhhhccccccc
Confidence               4567888899999999984   588999999999      9999999999886542000000  00 0112233334


Q ss_pred             EEcCccCCCCCCCeEEEEEeCC
Q 017569          272 NVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       272 ~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      ...+.++....++.|++.+...
T Consensus       239 ~s~sk~~~~~G~R~G~~~~~~~  260 (394)
T d2ay1a_         239 ASCSKNFGIYRERTGCLLALCA  260 (394)
T ss_dssp             EECTTTTTCGGGCEEEEEEECS
T ss_pred             ccccccccCCcccccchhhchh
Confidence            4446677777899999988654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.8e-15  Score=140.89  Aligned_cols=221  Identities=16%  Similarity=0.036  Sum_probs=161.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~--  167 (369)
                      .|....||+.    ++++-|.+.       .+.+++|+.|+..++.++...             ++.|+++...|...  
T Consensus        49 nPt~~~le~~----la~LEgg~~-------a~~~sSGMaAi~~~l~~l~~~-------------gd~vv~~~~~yg~t~~  104 (384)
T d1cs1a_          49 NPTRDVVQRA----LAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYR  104 (384)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCCc-------eEEecChHHHHHHHHhhcccc-------------cceecccccccchhhh
Confidence            4566777766    889988874       789999999998888876542             57899988777554  


Q ss_pred             --HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          168 --EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       168 --~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                        ...+...|+.+.+++..      |.+++++++.++|++|++-.|+||+..+.|+++|+++|+++      +++++||.
T Consensus       105 ~~~~~~~~~g~~~~~~d~~------d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~------g~~~vVDN  172 (384)
T d1cs1a_         105 LFDSLAKRGCYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDN  172 (384)
T ss_dssp             HHHHHHTTTSCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEEC
T ss_pred             hhhhhhcccccccccccCC------CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhc------CcEEEEec
Confidence              33444457676666532      67899999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++.++.  ..|   ++   .|+|.+.-|.-||+.+...  .|+++.+++... ..+.......+          .  ..
T Consensus       173 T~atP~~--~~P---l~---~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~-~~~~~~~~~~G----------~--~~  231 (384)
T d1cs1a_         173 TFLSPAL--QNP---LA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNIG----------V--TG  231 (384)
T ss_dssp             TTTCTTT--CCG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHT----------C--BC
T ss_pred             cccCccc--ccc---cc---cCCCEEEEccccccccCCCcccccccCCchhhh-hhhhhhhhhhh----------h--cc
Confidence            9865433  222   23   3899999999999876653  366666553222 11111111111          1  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+...|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       232 ~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  275 (384)
T d1cs1a_         232 GAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYH  275 (384)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEEC
T ss_pred             ccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeee
Confidence            36778888877665444422999999999999999998887654

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=2.3e-15  Score=141.44  Aligned_cols=220  Identities=12%  Similarity=0.052  Sum_probs=158.3

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++.+-|.+.       .+.+++|+.|+. ++.++..             .++.|+++...|.....
T Consensus        48 nPt~~~le~~----la~LE~~~~-------a~~fsSGMaAis-all~ll~-------------~Gd~vv~~~~~Yg~t~~  102 (380)
T d1ibja_          48 NPTRDALESL----LAKLDKADR-------AFCFTSGMAALS-AVTHLIK-------------NGEEIVAGDDVYGGSDR  102 (380)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHH-HHHTTSC-------------TTCEEEEESSCCHHHHH
T ss_pred             ChHHHHHHHH----HHHHcCCce-------EEehhhHHHHHH-HHHHhhC-------------CCCEEEEEecccccccc
Confidence            3556667766    899988874       688888888874 5544332             24789999888866554


Q ss_pred             HH----hhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 FA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~~----~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .+    ..+|+.+.+++..      |+++++++++++|++|++..|+||+..+.|+++|+++|+++      +++++||.
T Consensus       103 l~~~~~~~~gi~~~~~d~~------~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~------g~~~vVDn  170 (380)
T d1ibja_         103 LLSQVVPRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDN  170 (380)
T ss_dssp             HHHHTSGGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEEC
T ss_pred             hhhhhhccccccccccCcc------hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHc------CCeEEeec
Confidence            44    3457777776533      57899999999999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      +++.++.  .+|   .+   .|+|.+.-|.-|++++...  .|.++.++.... ..+.......          |.  ..
T Consensus       171 T~atP~~--~~P---l~---~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~-~~~~~~~~~~----------G~--~l  229 (380)
T d1ibja_         171 SIMSPVL--SRP---LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYFLQNSE----------GS--GL  229 (380)
T ss_dssp             TTTCTTT--CCG---GG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH-HHHHHHHHHT----------TC--BC
T ss_pred             ccccccc--ccc---cc---cCCCEEEecccceeccccCccccccccchhhHH-HHHHhhcccc----------CC--cC
Confidence            9876443  222   22   3899999999999877543  366666543221 1111111111          11  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|..++.+..-..+-.++.++|..++++|++++.+++-+|
T Consensus       230 ~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  273 (380)
T d1ibja_         230 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYY  273 (380)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEec
Confidence            36777888887765444433999999999999999999887544

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.63  E-value=2.2e-15  Score=142.80  Aligned_cols=265  Identities=11%  Similarity=0.016  Sum_probs=164.1

Q ss_pred             CChHHHHHHHHHHhcc-CC-CCC-----CCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCe--EEeCCchHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINK-NY-VDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG--VGTVGSSEAIMLAGLAF  137 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~-n~-~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~--~~t~Ggt~a~~~al~~~  137 (369)
                      ..++.+.+++...+.+ .. +++     .......++|.-+.+...++||+++.    .|+  +=..+|+.||+.++.++
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a----~w~vNVqp~SGs~An~av~~al  113 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTAL  113 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCch----hccCCccccccHHHHHHHHHHH
Confidence            3457788888777643 21 111     11124679999899999999999973    232  44458999998888887


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEe---cCCCcchHHH-----HHhhhcc--eeEEEeccCCccccCHHHHHHHHhh-cCcEE
Q 017569          138 KRKWQQKRKEQGKPYDKPNIVT---GANVQVCWEK-----FARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICV  206 (369)
Q Consensus       138 ~~~~~~~~~~~g~~~~~~~Vi~---s~~~h~s~~~-----~~~~~G~--~v~~v~~~~~~~~~d~~~L~~~i~~-~~~~v  206 (369)
                      .++             +++|+.   +.-.|.+--.     .....|.  ++...+++++++.+|.+++++...+ +|++|
T Consensus       114 l~p-------------gD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklI  180 (463)
T d2a7va1         114 LQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI  180 (463)
T ss_dssp             CCS-------------CEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEE
T ss_pred             cCC-------------CceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceE
Confidence            653             345553   3334543321     1222333  3444455666689999999998865 78887


Q ss_pred             EEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       207 ~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      ++-  .+.+-..-|++++.++|++.      |.++++|+++-.+.+  .....+..  ++.+|.++.++||.+.+|.| |
T Consensus       181 i~G--~S~y~r~~d~~~~reIad~v------ga~l~~D~aH~aGLI--A~g~~~sP--~~~aDvvt~tTHKTlrGPrg-G  247 (463)
T d2a7va1         181 IAG--TSAYARLIDYARMREVCDEV------KAHLLADMAHISGLV--AAKVIPSP--FKHADIVTTTTHKTLRGARS-G  247 (463)
T ss_dssp             EEC--CSSCCSCCCHHHHHHHHHHT------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSGGGCSCSC-E
T ss_pred             Eec--ccccccccCHHHHHHHhhcc------cceEEechhhhhHHh--hhhhhcCh--hhhhhhhhchhhhhhcCCCc-e
Confidence            743  33334566999999999999      999999999765554  12212222  34689999999999999886 7


Q ss_pred             EEEEeCCCCcccc---cccccCccCCCC--CCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhc
Q 017569          287 WVVWRTKDDLPDE---LVFHINYLGSDQ--PTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHS  359 (369)
Q Consensus       287 ~l~~~~~~~~~~~---~~~~~~y~~~~~--~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~  359 (369)
                      ++++++.......   -.....|.....  .-+.++|......++++..+++......+++.  +..+||+.|++.|.+.
T Consensus       248 iIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~  327 (463)
T d2a7va1         248 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER  327 (463)
T ss_dssp             EEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888763110000   000001100000  01234566666678888888888766666666  9999999999999999


Q ss_pred             CC
Q 017569          360 SY  361 (369)
Q Consensus       360 g~  361 (369)
                      ||
T Consensus       328 G~  329 (463)
T d2a7va1         328 GY  329 (463)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=1.5e-15  Score=139.26  Aligned_cols=265  Identities=12%  Similarity=-0.015  Sum_probs=164.4

Q ss_pred             CCccccccccCCChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHH
Q 017569           56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL  135 (369)
Q Consensus        56 p~~~l~~~~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~  135 (369)
                      |..+|.+-.+++.+|+|.+++.++.......|..    .++.+++++++++++|.+.      ..++|+|||+||..++.
T Consensus         3 ~~~~f~s~n~~g~~P~v~~A~~~a~~~~~~~~~~----~~~~~~l~~~la~~~g~~~------~v~f~~sGt~An~~a~~   72 (345)
T d1v72a1           3 PALGFSSDNIAGASPEVAQALVKHSSGQAGPYGT----DELTAQVKRKFCEIFERDV------EVFLVPTGTAANALCLS   72 (345)
T ss_dssp             CCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTC----SHHHHHHHHHHHHHHTSCC------EEEEESCHHHHHHHHHH
T ss_pred             CCcCcCCCCCCCCCHHHHHHHHHHhccCccccCC----CHHHHHHHHHHHHHHCCCc------EEEECCchHHHHHHHHH
Confidence            4456665556667788999988765433333333    3455567777999999874      37899999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHh---hhcceeEEEeccCCccccCHHHHHHHHhhcC------c-E
Q 017569          136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR---YFEVELKEVKLEEGYYVMNPVKAVELVDENT------I-C  205 (369)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~---~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~------~-~  205 (369)
                      +++..             +..+++....|.+......   ..+..+..++.+. .+.++++.+++.+.+..      . .
T Consensus        73 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~  138 (345)
T d1v72a1          73 AMTPP-------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPA  138 (345)
T ss_dssp             TSCCT-------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred             HHHhc-------------CCccccccccceeeechhhHHHhcCcccccccccc-cccccHHHhhhhhcccccccccccce
Confidence            76542             3567777778877665443   3345555555544 47899999999997642      2 2


Q ss_pred             EEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC
Q 017569          206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY  282 (369)
Q Consensus       206 v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p  282 (369)
                      ++.....++.|..   ++++++.++|+++      ++++|+|++++++..+...............+.++.+.+|.+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (345)
T d1v72a1         139 CVSITQATEVGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA  212 (345)
T ss_dssp             EEEEESSCTTSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSS
T ss_pred             eeeeeccccccccccchhhhhHHHHHHhc------CceeeecccccceeccccccCHHHhhccccccccccCcccccccc
Confidence            3333444444443   6788899999999      999999999987655322221112222335667777777766433


Q ss_pred             CCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcC
Q 017569          283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSS  360 (369)
Q Consensus       283 ~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g  360 (369)
                      .  +..+....... ...  ...+...       .++... .....+.....+......+.  +...+++++.+.+.+.+
T Consensus       213 ~--~~~~~~~~~~~-~~~--~~~~~~~-------~~~~~~-~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  279 (345)
T d1v72a1         213 A--EAIVLFNTSLA-TEM--SYRRKRA-------GHLSSK-MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG  279 (345)
T ss_dssp             C--EEEEESSGGGH-HHH--HHHHHHT-------TCCCSS-THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             c--cccccchhhhh-hhc--ccccccc-------ccccch-hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcC
Confidence            3  34444322111 110  0000000       011112 24455566667766666555  88899999999999987


Q ss_pred             CCc
Q 017569          361 YFY  363 (369)
Q Consensus       361 ~~~  363 (369)
                      .+.
T Consensus       280 g~~  282 (345)
T d1v72a1         280 GVE  282 (345)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6.3e-15  Score=143.12  Aligned_cols=251  Identities=11%  Similarity=-0.005  Sum_probs=155.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 017569           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (369)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~  165 (369)
                      .|+..|...+||++    +++++|.+.       ++++++|++||..++.+++.+......    ......++.+...|.
T Consensus        69 ~Y~~~~~~~~le~~----~a~l~G~~~-------~~~~~sGt~A~~~a~~~~~~~g~~~~~----~~~~~~i~~~~~~~~  133 (467)
T d2v1pa1          69 AFSGSRSYYALAES----VKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQEKG----LDRSKMVAFSNYFFD  133 (467)
T ss_dssp             CSSSCHHHHHHHHH----HHHHTCCSE-------EEEECSSTTTHHHHHHHHHHHHHHHHC----CCTTTCEEEESSCCH
T ss_pred             hhcCCchHHHHHHH----HHHHHCCCE-------EEECCCCHHHHHHHHHHHhhccceEec----CCCCcEEEEeccccc
Confidence            35566777788876    899999986       799999999999999998876443211    111224666777777


Q ss_pred             hHHHHHhhhcceeEEEeccCC---------ccccCHHHHHHHHhh----cCcEEEEeeCCCCccc-C---CCHHHHHHHH
Q 017569          166 CWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDE----NTICVAAILGSTLTGE-F---EDVKLLHDLL  228 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~-~---~~l~~I~~l~  228 (369)
                      .....+...|+.++.++.+..         .+.+|+++|++++++    .+.++++...++..|. +   +++++|.++|
T Consensus       134 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia  213 (467)
T d2v1pa1         134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA  213 (467)
T ss_dssp             HHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHH
Confidence            777888888999988877532         367999999999975    3455665555555443 3   5789999999


Q ss_pred             HHhhhccCCCceEEeecccccccccccC-------CCccccc--c-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccc
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFLY-------PDLEWDF--R-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD  298 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~-------~~~~~~~--~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~  298 (369)
                      ++|      |+++|+|+|+.++...+..       .....++  . ...+|+++++.||.+++|.| |+++.++......
T Consensus       214 ~~~------g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~~  286 (467)
T d2v1pa1         214 KKY------DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDV  286 (467)
T ss_dssp             HHT------TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHH
T ss_pred             HHc------CCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhhH
Confidence            999      9999999997543321000       0000000  0 33689999999999987665 6676655432211


Q ss_pred             ccc-cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCC
Q 017569          299 ELV-FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       299 ~~~-~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~  362 (369)
                      ... ........   .....+.-....+.++...+.....+.+.+ +..++++||+++|++.+..
T Consensus       287 ~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~~~  347 (467)
T d2v1pa1         287 YTECRTLCVVQE---GFPTYGGLEGGAMERLAVGLYDGMNLDWLA-YRIAQVQYLVDGLEEIGVV  347 (467)
T ss_dssp             HHHHHHHHHHTT---SSCCCCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred             HHhhcccccccc---cCcchhhhHHHHHHHHHHHhHHhhhHHHHH-HHHHHHHHHHHHHHhcCCc
Confidence            100 00000000   000011111222222222233332222221 7788999999999997754

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.62  E-value=9.5e-15  Score=139.66  Aligned_cols=230  Identities=12%  Similarity=0.061  Sum_probs=150.6

Q ss_pred             HHHhhhhcCCCC-ccccccc---cC---CChHHHHHHHHHHhccC--CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCC
Q 017569           46 INDELMLDGNPR-LNLASFV---TT---WMEPECDKLVMASINKN--YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDK  116 (369)
Q Consensus        46 l~~~~~~~~~p~-~~l~~~~---~~---~~~~~v~~~~~~~~~~n--~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~  116 (369)
                      +.+.+..+.+|. +||+.+.   +.   +..+.|.++.....+..  .+.|....|..+|++++.+++.+..+....+ .
T Consensus        19 ~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~-~   97 (412)
T d1yaaa_          19 IKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE-D   97 (412)
T ss_dssp             HHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-T
T ss_pred             HHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccc-c
Confidence            335555666775 7887653   22   22367777755544332  3457777899999999988887765543211 1


Q ss_pred             CCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEecc-CCccccCHHHH
Q 017569          117 TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKA  195 (369)
Q Consensus       117 ~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~L  195 (369)
                      ......+.|+..+...++......           ..+++|++++++|+.+...++..|+.++.+|+. ++++.+|.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  166 (412)
T d1yaaa_          98 RVISVQSLSGTGALHISAKFFSKF-----------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGF  166 (412)
T ss_dssp             CEEEEEEEHHHHHHHHHHHHHHHH-----------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHH
T ss_pred             ceeEEecccchhHHHHHHHHHhcc-----------CCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhh
Confidence            111222334444443333222211           125799999999999999999999999999984 45588999999


Q ss_pred             HHHHhh---cCcEEEEeeCCCCcccCC---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCc--ccc---cc
Q 017569          196 VELVDE---NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWD---FR  264 (369)
Q Consensus       196 ~~~i~~---~~~~v~~~~~~~~tG~~~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~---~~  264 (369)
                      ++.+..   ++++++++.|+||||.+-   .+++|+++|+++      +++++.|.+|..+...-.....  ...   ..
T Consensus       167 ~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~  240 (412)
T d1yaaa_         167 LNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKL  240 (412)
T ss_dssp             HHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred             hcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC------CEEEeecceeeecccCCcccchhhhhhhhhcc
Confidence            888864   456889999999999984   589999999999      9999999999876541000000  000   00


Q ss_pred             CCCC-cEEEEc-CccCCCCCCCeEEEEEeCC
Q 017569          265 LPLV-KSINVS-GHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       265 ~~~~-Dsi~~~-~hK~l~~p~g~g~l~~~~~  293 (369)
                      .... -.+..+ +.++++.++++|++++..+
T Consensus       241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  271 (412)
T d1yaaa_         241 STVSPVFVCQSFAKNAGMYGERVGCFHLALT  271 (412)
T ss_dssp             TTTCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred             ccCCCeEEEEecCCccccCcCceEEEEEchh
Confidence            1111 133334 4556778999999998754

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.61  E-value=7.6e-15  Score=138.33  Aligned_cols=185  Identities=11%  Similarity=0.101  Sum_probs=135.7

Q ss_pred             HHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 017569           73 DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY  152 (369)
Q Consensus        73 ~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~  152 (369)
                      .+++.+.+++++.. ..++...+||++    +++++|.+.       .+++++||.|+.+|+.++.-            .
T Consensus         4 ~~~~~~~l~~~~~~-~~G~~~~~fE~~----~~~~~~~~~-------~~~~~SgT~Al~lal~~l~~------------~   59 (374)
T d1o69a_           4 LKYIEEVFKSNYIA-PLGEFVNRFEQS----VKDYSKSEN-------ALALNSATAALHLALRVAGV------------K   59 (374)
T ss_dssp             HHHHHHHHHHTTTS-CTTHHHHHHHHH----HHHHHCCSE-------EEEESCHHHHHHHHHHHTTC------------C
T ss_pred             HHHHHHHHhcCCcC-CCCHHHHHHHHH----HHHHHCcCe-------EEEeCCHHHHHHHHHHHcCC------------C
Confidence            46677788777543 236778888888    888999986       89999999999999987522            1


Q ss_pred             CCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHH--HHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH
Q 017569          153 DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV--ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK  230 (369)
Q Consensus       153 ~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~--~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~  230 (369)
                      .+++|++|..+|.+...++...|+.+++++++++...++.+..+  ..+.+++++|++   ++..|...++++|.++|++
T Consensus        60 ~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~---~~~~G~~~d~~~i~~~~~~  136 (374)
T d1o69a_          60 QDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALIL---THLYGNAAKMDEIVEICKE  136 (374)
T ss_dssp             TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEE---ECGGGCCCCHHHHHHHHHH
T ss_pred             CcCEEEeCCcchHhhHHHHhhccceeEecccccccccccccccccchhcccccccccc---cccccchhhhHHHHHHhhc
Confidence            25799999999999999999999999999999764555555443  455567877774   4556888999999999999


Q ss_pred             hhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCc
Q 017569          231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL  296 (369)
Q Consensus       231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~  296 (369)
                      +      +++|+.|+|++.+..  ....   ... ...+-.+++.+.|-+.+..| |++++.+++..
T Consensus       137 ~------~i~vIED~a~a~g~~--~~~~---~~G~~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~~  191 (374)
T d1o69a_         137 N------DIVLIEDAAEALGSF--YKNK---ALGTFGEFGVYSYNGNKIITTSGG-GMLIGKNKEKI  191 (374)
T ss_dssp             T------TCEEEEECTTCTTCE--ETTE---ETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHH
T ss_pred             c------Ccchhhhhhhhhcce--ECCe---ecCCCCceEEEeccCccccccccc-eeehhhhHHHH
Confidence            9      999999999986543  1111   111 22233444445688866544 78888765443

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.2e-15  Score=145.08  Aligned_cols=225  Identities=9%  Similarity=-0.084  Sum_probs=148.1

Q ss_pred             hhcCCCC-ccccccc---cC---CChHHHHHHHHHHhcc--CCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeE
Q 017569           51 MLDGNPR-LNLASFV---TT---WMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV  121 (369)
Q Consensus        51 ~~~~~p~-~~l~~~~---~~---~~~~~v~~~~~~~~~~--n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~  121 (369)
                      ..+.+|. +||+.+.   +.   +..+.+.++.....+.  ....|....|..+|++++.+++.+..+.+.+.   ....
T Consensus        21 ~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~---~~i~   97 (397)
T d3tata_          21 KEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ---QRVA   97 (397)
T ss_dssp             HHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHT---TCEE
T ss_pred             hcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCc---CcEE
Confidence            3445565 6777663   11   2236777876655433  23456777899999999888887766654211   2245


Q ss_pred             EeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccC-CccccCHHHHHHHHh
Q 017569          122 GTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVD  200 (369)
Q Consensus       122 ~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~L~~~i~  200 (369)
                      .+.|++.+...++..+...+.         ..+++|++++|+|+.+...++.+|++++.+|++. +.+.+|.+++.+.+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~~~---------~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~  168 (397)
T d3tata_          98 TIQTLGGSGALKVGADFLKRY---------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLK  168 (397)
T ss_dssp             ECCBSHHHHHHHHHHHHHHHH---------CSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHT
T ss_pred             EecCchhHHHHHHHHHHhhhc---------CCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhh
Confidence            555555444333333222111         1246899999999999999999999999999964 457889888888765


Q ss_pred             ---hcCcEEEEeeCCCCcccC---CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccc-cccCCCCcEEEE
Q 017569          201 ---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINV  273 (369)
Q Consensus       201 ---~~~~~v~~~~~~~~tG~~---~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~Dsi~~  273 (369)
                         ++++++++++|+||||.+   +.+++|+++|+++      +++++.|.+|..+....-...... .....+-..+.+
T Consensus       169 ~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~------~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~  242 (397)
T d3tata_         169 TLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR------ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVS  242 (397)
T ss_dssp             TCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT------TCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEEC
T ss_pred             hcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc------CeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEE
Confidence               467889999999999998   4588999999999      999999999987654100000000 011112233333


Q ss_pred             c-Ccc-CCCCCCCeEEEEEeCC
Q 017569          274 S-GHK-YGLVYAGVGWVVWRTK  293 (369)
Q Consensus       274 ~-~hK-~l~~p~g~g~l~~~~~  293 (369)
                      + +.| ++...+++|+++....
T Consensus       243 ~s~SK~~~~~G~RiG~~~~~~~  264 (397)
T d3tata_         243 NSFSKIFSLYGERVGGLSVMCE  264 (397)
T ss_dssp             BCCHHHHTBTTTCCBCCEEECS
T ss_pred             ecCcccccccCccccccccchh
Confidence            3 445 5666789999988654

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3e-14  Score=134.86  Aligned_cols=248  Identities=10%  Similarity=-0.057  Sum_probs=165.8

Q ss_pred             hHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHH
Q 017569           69 EPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR  145 (369)
Q Consensus        69 ~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~  145 (369)
                      +|.+.+++.+++++.......+   .+...+..++.+.+++++|.+.       .+++++|..||..++.++..+     
T Consensus        54 ~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~-------al~~~SG~~an~~~i~al~~~-----  121 (383)
T d1bs0a_          54 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAANQAVIAAMMAK-----  121 (383)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-----
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCc-------eEEecccchhhHHHHHhhcCC-----
Confidence            5778888888876643332222   2344455556666999999985       789999999999988887442     


Q ss_pred             HhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh---cCcEEEEeeCCCCcccCCCHH
Q 017569          146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVK  222 (369)
Q Consensus       146 ~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~---~~~~v~~~~~~~~tG~~~~l~  222 (369)
                              ++.|++....|.++...++..+..++.++-+      |+++|++.+.+   ++++|++....+.+|.+-|++
T Consensus       122 --------~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn------d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~  187 (383)
T d1bs0a_         122 --------EDRIAADRLSHASLLEAASLSPSQLRRFAHN------DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLA  187 (383)
T ss_dssp             --------TCEEEEETTCCHHHHHHHHTSSSEEEEECTT------CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHH
T ss_pred             --------CceEEeeccccHHHhhccccCCCcceEecch------HHHHHHHHhcccCCCceEEEecCCCCCCCcccchh
Confidence                    5789999999999999999988888776643      67888887754   457888899999999999999


Q ss_pred             HHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCccccccc
Q 017569          223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF  302 (369)
Q Consensus       223 ~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  302 (369)
                      +|.++|++|      +++++||+|++.++++..... ..+..-...|.+.....|.++++.  |+++... +.. +.+..
T Consensus       188 ~l~~l~~~~------~~~livDeah~~gv~G~~g~G-~~~~~~~~~~~~~~t~~ka~g~~G--g~v~~~~-~~~-~~l~~  256 (383)
T d1bs0a_         188 EIQQVTQQH------NGWLMVDDAHGTGVIGEQGRG-SCWLQKVKPELLVVTFGKGFGVSG--AAVLCSS-TVA-DYLLQ  256 (383)
T ss_dssp             HHHHHHHHT------TCEEEEECTTTTTTSSGGGCC-HHHHTTCCCSEEEEESSSTTSSCC--EEEEECH-HHH-HHHHH
T ss_pred             HHHHHHHhc------CcEEEeecceeeeecCCcccc-hHHHcCCccccccccccccccccc--cccccch-hHH-HHHHh
Confidence            999999999      999999999998776311110 011111245566666778775433  4444432 221 22211


Q ss_pred             -ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          303 -HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       303 -~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                       ...|....        ..+...+.++-.+++.+.......+  +..++..++++.|.+.|+
T Consensus       257 ~~~~~~~s~--------~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~  310 (383)
T d1bs0a_         257 FARHLIYST--------SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF  310 (383)
T ss_dssp             HCHHHHSSB--------CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             hchhhhhcc--------cccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence             12222211        1111223344455655544444444  888999999999999886

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.59  E-value=1.5e-14  Score=140.34  Aligned_cols=183  Identities=13%  Similarity=0.074  Sum_probs=122.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc
Q 017569           86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV  165 (369)
Q Consensus        86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~  165 (369)
                      .|...+...+||+.    +++++|.+.       ++++++|++|+..++.++++.....    |  ..+..++.+...|.
T Consensus        70 ~y~~~~~~~~le~~----~a~l~g~~~-------~~~~~sGt~A~~~a~~~~~~~g~~~----~--~~~~~~i~~~~h~~  132 (465)
T d1ax4a_          70 AYAGSRNYYDLKDK----AKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQKE----G--KAKNPVFISNFHFD  132 (465)
T ss_dssp             CSSSCHHHHHHHHH----HHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHHHT----T--CCSSCEEEESSCCH
T ss_pred             hhccChHHHHHHHH----HHHHHCCCE-------EEECCCcHHHHHHHHHHHHHHHHhc----C--CCCCeEEeccchhh
Confidence            35556777778766    788899985       8999999999999999998764321    1  12345566665566


Q ss_pred             hHHHHHhhhcceeEEEec---------cCCccccCHHHHHHHHhhc----CcEEEEeeCCCCccc-C---CCHHHHHHHH
Q 017569          166 CWEKFARYFEVELKEVKL---------EEGYYVMNPVKAVELVDEN----TICVAAILGSTLTGE-F---EDVKLLHDLL  228 (369)
Q Consensus       166 s~~~~~~~~G~~v~~v~~---------~~~~~~~d~~~L~~~i~~~----~~~v~~~~~~~~tG~-~---~~l~~I~~l~  228 (369)
                      ++...+...|..+..++.         ++..+.+|+++|+++|++.    +..+++...++..|. +   +++++|.++|
T Consensus       133 t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~  212 (465)
T d1ax4a_         133 TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA  212 (465)
T ss_dssp             HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHH
Confidence            666666777877665533         2335789999999999762    233444444443332 2   4688999999


Q ss_pred             HHhhhccCCCceEEeeccccccccccc--------CCCc---cccccCCCCcEEEEcCccCCCCCCCeEEEEEeCC
Q 017569          229 TKKNEETGWDTPIHVDAASGGFIAPFL--------YPDL---EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK  293 (369)
Q Consensus       229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~--------~~~~---~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~  293 (369)
                      +++      |+++|+|+|+..+...+.        ....   ..++ ...+|.++++.||.+++|. .|+++.++.
T Consensus       213 ~~~------g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~d~~s~s~~k~~~~~~-~g~l~~~~~  280 (465)
T d1ax4a_         213 KQH------GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM-YKYADALTMSAKKDPLLNI-GGLVAIRDN  280 (465)
T ss_dssp             HHH------TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH-GGGCSEEEEETTSTTCCSS-CEEEEESSC
T ss_pred             HHc------CCEEEEECcchhhhhcccccccccccccchhhhcccc-ccccceeEeecccCccccc-ceeEeecch
Confidence            999      999999999864332110        0000   0011 2247999999999986555 488887654

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=1.1e-13  Score=131.12  Aligned_cols=234  Identities=16%  Similarity=0.078  Sum_probs=161.0

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++.+-|.+.       .+.+++|+.|+..++.++...             ++.|+++...|.....
T Consensus        57 nPT~~~LE~~----la~LE~~~~-------a~~~~SGmaAi~~~~~~l~~~-------------gd~il~~~~~Yg~t~~  112 (421)
T d2ctza1          57 NPTVDVLEKR----LAALEGGKA-------ALATASGHAAQFLALTTLAQA-------------GDNIVSTPNLYGGTFN  112 (421)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEECSCCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCCe-------EEEecChHHHHHHHHHhhccc-------------ccceeecCCcCCchhH
Confidence            3566677766    888988874       788999999998888877542             5799999988865444


Q ss_pred             ----HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                          .+..+|+++.+++.+.     +.+..++.++++|++|++-+|+||+..+.|+++|+++|+++      +++++||.
T Consensus       113 l~~~~~~~~gi~~~~~d~~~-----~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~------g~~~vvDn  181 (421)
T d2ctza1         113 QFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDN  181 (421)
T ss_dssp             HHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEEC
T ss_pred             HHHHHHhhccccceeccccc-----CcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhc------CCceEecc
Confidence                4456688887775432     35666777889999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCccc---cccc--ccCccCCCC----CC-
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPD---ELVF--HINYLGSDQ----PT-  313 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~---~~~~--~~~y~~~~~----~~-  313 (369)
                      .++.  .|+++.  +++   .|+|.+.-|.-|++++....  |+++.++......   .+..  ...|-+...    .. 
T Consensus       182 T~a~--tP~~~~--Pl~---~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  254 (421)
T d2ctza1         182 TFGM--GGYLLR--PLA---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGEL  254 (421)
T ss_dssp             GGGG--GGTSCC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGG
T ss_pred             cccc--cceecc--ccc---cCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccH
Confidence            9872  122221  122   38999999999999776543  6666654322110   0000  000100000    00 


Q ss_pred             -c---------cccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          314 -F---------TLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       314 -~---------~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                       +         ...|.  ...+..+|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       255 ~~~~~~~~~~~~~~G~--~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~y  316 (421)
T d2ctza1         255 AFIVKARVDGLRDQGQ--ALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNY  316 (421)
T ss_dssp             HHHHHHHHTHHHHHCC--CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             HHHHHHHHHHHHhccC--CCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEec
Confidence             0         00011  1235678887777765554433999999999999999999887665

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.3e-14  Score=136.43  Aligned_cols=251  Identities=12%  Similarity=-0.039  Sum_probs=163.7

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCc---chHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .+|.+.+++.++++.....+..++   +...+.+++.+.+++++|.+.       ..++++|++||..++.++..     
T Consensus        60 ~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~-------al~~~SG~~An~~~i~~l~~-----  127 (401)
T d1fc4a_          60 NHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFDANGGLFETLLG-----  127 (401)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCc-------eEEecchhhhhHHHHHHhcC-----
Confidence            368888888888876554444432   223444455566999999985       89999999999998887643     


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHH---hh---cCcEEEEeeCCCCcccC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV---DE---NTICVAAILGSTLTGEF  218 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i---~~---~~~~v~~~~~~~~tG~~  218 (369)
                              .++.|++....|.++...+...+.++..++..      |.+++++.+   ++   .+++|++....+..|.+
T Consensus       128 --------~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~------d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~  193 (401)
T d1fc4a_         128 --------AEDAIISDALNHASIIDGVRLCKAKRYRYANN------DMQELEARLKEAREAGARHVLIATDGVFSMDGVI  193 (401)
T ss_dssp             --------TTCEEEEETTCCHHHHHHHHTSCSEEEEECTT------CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE
T ss_pred             --------CCcEEEeCCcchHHHHccccccCceEEEEcCC------ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCch
Confidence                    25689999999999999999988887776543      344454444   33   23566666666677989


Q ss_pred             CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       219 ~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                      .|+++|.++|+++      ++++++|+|++.+.+..-.......+. ...+|.++.+..|.++++.| |+++. +++.. 
T Consensus       194 ~~L~~l~~L~~~~------~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g-~~~~~-  264 (401)
T d1fc4a_         194 ANLKGVCDLADKY------DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAA-RKEVV-  264 (401)
T ss_dssp             CCHHHHHHHHHHT------TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEE-CHHHH-
T ss_pred             hhhhHHHHHHhhc------CcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccC-CHHHH-
Confidence            9999999999999      999999999998765210000011112 44689999999999866554 55544 33222 


Q ss_pred             cccc-cccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          298 DELV-FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       298 ~~~~-~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                      +.+. ....|....        +-+...+.+...+++.+.. +-+.+ +..++.++|++.+.+.|+-
T Consensus       265 ~~l~~~~~~~~~s~--------~l~p~~~~aa~~~l~~~~~-~~~~~~~l~~~~~~~~~~l~~~g~~  322 (401)
T d1fc4a_         265 EWLRQRSRPYLFSN--------SLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSAAGFT  322 (401)
T ss_dssp             HHHHHHCHHHHHSC--------CCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHcCChhhhhcC--------CCCHHHHHHHHhhhccccc-CHHHHHHHHHHHHHHHhhhcccCCc
Confidence            1211 112222211        1111223333344444422 22223 8999999999999998863

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.58  E-value=4.2e-14  Score=133.40  Aligned_cols=222  Identities=14%  Similarity=0.045  Sum_probs=159.4

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchH--
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW--  167 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~--  167 (369)
                      .|....||+.    ++++-|.+.       .+.+++|+.|+..++.++...             ++.|++++..|...  
T Consensus        58 nPT~~~le~~----la~LEg~~~-------a~~~sSGmaAi~~~~l~l~~~-------------gd~vv~~~~~yg~t~~  113 (394)
T d1e5ea_          58 NPTVSNLEGK----IAFLEKTEA-------CVATSSGMGAIAATVLTILKA-------------GDHLISDECLYGCTHA  113 (394)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHH
T ss_pred             CHHHHHHHHH----HHHHhCCcc-------eeeeccchHHHHHHHHhhccc-------------ccccccccceeehhhH
Confidence            3566677766    889999875       788899999998888776542             57899988877543  


Q ss_pred             --HHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHH-hhhccCCCceEEee
Q 017569          168 --EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVD  244 (369)
Q Consensus       168 --~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~-~~~~~~~~~~l~vD  244 (369)
                        ......+|+.+.+++..      |+++++++++++|++|++..|+||+..+.|++++++++++ +      ++.++||
T Consensus       114 ~~~~~~~~~gi~~~~~d~~------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~------g~~vvvD  181 (394)
T d1e5ea_         114 LFEHALTKFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIAD  181 (394)
T ss_dssp             HHHTHHHHTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEE
T ss_pred             hHHHHhhccceeeeccCCC------CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhcccccc------CeEEEec
Confidence              33455678899888754      4578999999999999999999999999999999987765 5      8999999


Q ss_pred             cccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcch
Q 017569          245 AASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS  322 (369)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~  322 (369)
                      .+++..+.  ..   ++++   |+|.+.-|.-|++++....  |+++.+++......    ..+..    +  ..|.  .
T Consensus       182 nT~atP~~--~~---Pl~~---GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~----~~~~~----~--~~G~--~  241 (394)
T d1e5ea_         182 NTFCSPMI--TN---PVDF---GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIR----MVGIK----D--ITGS--V  241 (394)
T ss_dssp             CTTTCTTT--CC---GGGG---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHH----HTCCC----C--CCCC--C
T ss_pred             CcccCccc--CC---chhc---CCCEEEechhhhcCCCcccccccccchhhHHHHHH----HHHHH----H--hhCC--C
Confidence            99875443  22   2333   8999999999998775443  66665432111100    01100    0  0011  1


Q ss_pred             hHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          323 SQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       323 ~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      ..+..+|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       242 lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~y  286 (394)
T d1e5ea_         242 ISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYY  286 (394)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeC
Confidence            236777877777765444433999999999999999999887654

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.58  E-value=1.5e-14  Score=133.72  Aligned_cols=214  Identities=16%  Similarity=0.061  Sum_probs=154.4

Q ss_pred             HHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch----HHHHHhhhcce
Q 017569          102 NMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVE  177 (369)
Q Consensus       102 ~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s----~~~~~~~~G~~  177 (369)
                      +.++.+.|.+.       ...+++|+.|+..++.++.+.             ++.|+++...|..    +.+.++.+|++
T Consensus         5 ~~la~Leg~~~-------a~~~sSGMaAi~~~l~~ll~~-------------Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~   64 (331)
T d1pffa_           5 GKIAKLEHAEA-------CAATASGMGAIAASVWTFLKA-------------GDHLISDDCLYGCTHALFEHQLRKFGVE   64 (331)
T ss_dssp             HHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred             HHHHHHhCCCe-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHhcCeE
Confidence            34889988874       788899999998888877542             4689988876654    34445667999


Q ss_pred             eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHH-HHhhhccCCCceEEeecccccccccccC
Q 017569          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLY  256 (369)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~-~~~~~~~~~~~~l~vD~a~~~~~~~~~~  256 (369)
                      +.+++..      |++.++++++++|++|++..++||+..+.|++++++++ +++      ++.++||..++.++.  ..
T Consensus        65 ~~~~d~~------d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~------~~~~vVDnT~atp~~--~~  130 (331)
T d1pffa_          65 VDFIDMA------VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPIL--TN  130 (331)
T ss_dssp             EEEECTT------STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHH--CC
T ss_pred             EEEeccc------chhhHhhhcccccceeeeecccccccccccchhhhhhhhccc------CceEEeecccccccc--cc
Confidence            9888754      56889999999999999999999999999999999985 567      999999999886543  22


Q ss_pred             CCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHH
Q 017569          257 PDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR  334 (369)
Q Consensus       257 ~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~  334 (369)
                      |   .++   |+|.+.-|.-||+.+....  |.++.++.... ...   ..+..    .  +.|.  ...+..+|..++.
T Consensus       131 p---l~~---GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~-~~~---~~~~~----~--~~G~--~l~p~~a~ll~rg  192 (331)
T d1pffa_         131 P---LDL---GVDIVVHSATKYINGHTDVVAGLVCSRADIIA-KVK---SQGIK----D--ITGA--IISPHDAWLITRG  192 (331)
T ss_dssp             G---GGG---TCSEEEEETTTTTSSSSSCCCEEEEECHHHHH-HHH---HTCCC----C--CCCC--CCCHHHHHHHHHH
T ss_pred             c---ccc---CCCEEEecchhhcCCCCccccccccccccchh-hhh---hhhhh----h--ccCC--CCCHHHHHHHHHH
Confidence            2   232   7999999999998775433  66665432111 110   00000    0  0011  2236778888776


Q ss_pred             hcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          335 LGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       335 lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      +..-..+-.++.+||..++++|++++.+++-+|
T Consensus       193 l~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~y  225 (331)
T d1pffa_         193 TLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYY  225 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhCCcEEeecc
Confidence            654444422999999999999999999987654

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.58  E-value=5.2e-14  Score=132.60  Aligned_cols=221  Identities=11%  Similarity=-0.035  Sum_probs=157.1

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHH-
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE-  168 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~-  168 (369)
                      .|....||+.    ++++.|.+.       .+.+++|+.|+..++.++...             ++.|+++...|.... 
T Consensus        66 nPt~~~LE~~----la~LEgg~~-------a~~~sSGMaAi~~~l~~l~~~-------------Gd~iv~~~~~Yg~t~~  121 (398)
T d1qgna_          66 NPTTVVLEEK----ISALEGAES-------TLLMASGMCASTVMLLALVPA-------------GGHIVTTTDCYRKTRI  121 (398)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESCHHHHHHHHHHHHSCS-------------SCEEEEETTSCHHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCce-------EEEecCcchHHHHHHhhcccc-------------cccccccccccchhhh
Confidence            4566677766    888988864       789999999998888876442             578888887775543 


Q ss_pred             ---HHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          169 ---KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       169 ---~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                         +....+|+++.+++...     +.+..++.++++|++|++-.|+||+..+.|+++|+++|+++      +++++||.
T Consensus       122 l~~~~~~~~gi~~~~~~~~~-----~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~------g~~~vVDn  190 (398)
T d1qgna_         122 FIETILPKMGITATVIDPAD-----VGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDG  190 (398)
T ss_dssp             HHHHTGGGGTCEEEEECSSC-----HHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEEC
T ss_pred             hhcccccccccccccccccc-----hhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhc------CCEEEecc
Confidence               44556688887776321     22344456678999999999999999999999999999999      99999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++..+.  ..|   +   ..|+|.+.-|.-|++++....  |++ +.+++... .+.......          |.  ..
T Consensus       191 T~atP~~--~~P---l---~~GaDiVihS~TKy~~Ghsdv~~G~v-~~~~~~~~-~~~~~~~~~----------G~--~l  248 (398)
T d1qgna_         191 TFATPLN--QKA---L---ALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVS-EIRNLHHIL----------GG--AL  248 (398)
T ss_dssp             TTTCTTT--CCT---T---TTTCSEEEECTTTTTTCSSSCCCEEE-EECHHHHH-HHHHHHHHH----------CC--CC
T ss_pred             eeecccc--CCc---h---hhCCCEEEEechhhcCcccceeehhh-cchhhhhh-hhhhhcccC----------CC--cC
Confidence            9875433  222   2   238999999999999776543  444 34332221 111100111          11  22


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+...|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       249 ~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y  292 (398)
T d1qgna_         249 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYY  292 (398)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCC
Confidence            46778888887765454433999999999999999998887554

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.9e-14  Score=132.42  Aligned_cols=222  Identities=13%  Similarity=0.020  Sum_probs=145.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-eEEecCCCcchHHHHHhhhcce
Q 017569           99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARYFEVE  177 (369)
Q Consensus        99 ~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~-~Vi~s~~~h~s~~~~~~~~G~~  177 (369)
                      ++++++++.+|++++     .+++|+|+++++.+++.++..+             ++ +|+++.++|..+...++..|..
T Consensus        60 ~Lr~~ia~~~gv~pe-----~I~it~Gs~eai~~~~~~~~~p-------------gd~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          60 AVIENYAQYAGVKPE-----QVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             HHHHHHHHHHTSCGG-----GEEEESHHHHHHHHHHHHHCCT-------------TTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             HHHHHHHHHhCCChH-----HeeeccCchHHHHHHHHHhhcc-------------ccccccccccccccchhhhhccCce
Confidence            455568999999873     5999999999999999987552             34 6889999999999999999999


Q ss_pred             eEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCC
Q 017569          178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP  257 (369)
Q Consensus       178 v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  257 (369)
                      ++.++.++ ++.+|++++++++. ++++|+++.|+||||.+.+-+++..+++..+.    +.++++|.+|..+....  .
T Consensus       122 v~~~~~~~-~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~----~~~~iidd~~~~f~~~~--~  193 (354)
T d1fg7a_         122 CRTVPTLD-NWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG----KAIVVADEAYIEFCPQA--S  193 (354)
T ss_dssp             EEECCCCT-TSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT----TCEEEEECTTGGGSGGG--C
T ss_pred             eecccccc-ccccchhhhhhccc-ccceeeccCCCccceeEeeecccccccccccc----cccccccccchhhcccc--c
Confidence            99998876 49999999998874 68899999999999999765554444443211    67788888876543211  1


Q ss_pred             CccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhc
Q 017569          258 DLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG  336 (369)
Q Consensus       258 ~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg  336 (369)
                       .........--.+.-+..|.++ .+.++|+++.. ++.. ..+..   +..    .+.  .+     ...+..+...+.
T Consensus       194 -~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i-~~l~~---~~~----~~~--~~-----~~~~~~a~~~~~  256 (354)
T d1fg7a_         194 -LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVI-NLLMK---VIA----PYP--LS-----TPVADIAAQALS  256 (354)
T ss_dssp             -SGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHH-HHHHH---HSC----SSC--SC-----HHHHHHHHHHTS
T ss_pred             -cchhhcccccceEEeCCccccCCCcccccccccc-chhh-hhhhh---hcC----ccc--hh-----hHHHHHHHHHHh
Confidence             1111111122234457889865 67899999863 2222 22211   000    000  11     122223333444


Q ss_pred             HhhHHHH-----HhhHHHHHHHHHHHhcCCCc
Q 017569          337 FEVIPSF-----CCVDHKKLSSFFVIHSSYFY  363 (369)
Q Consensus       337 ~~G~~~~-----~~~~~a~~l~~~L~~~g~~~  363 (369)
                      .+.....     +..+..+++.+.|.+++..+
T Consensus       257 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~  288 (354)
T d1fg7a_         257 PQGIVAMRERVAQIIAEREYLIAALKEIPCVE  288 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             hhccccccccchhhhhHHHHHHHHHHhCCCcc
Confidence            3333322     45666778888898888654

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.57  E-value=9.6e-14  Score=131.34  Aligned_cols=253  Identities=11%  Similarity=-0.038  Sum_probs=169.8

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCC---cchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHH
Q 017569           68 MEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK  144 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~  144 (369)
                      .+|.+.++..++++........+   .+...+.+++.+.+++++|.+.       .++.++|..||..++.++...    
T Consensus        60 ~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~-------all~~sG~~An~~~i~~l~~~----  128 (396)
T d2bwna1          60 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA-------ALVFSSAYNANDATLSTLRVL----  128 (396)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHHHHH----
T ss_pred             CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc-------eeeeecchHHHHHHHHHHhcc----
Confidence            35788888888887644333332   2445555566677999999985       788889999998887776432    


Q ss_pred             HHhcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhh----cCcEEEEeeCCCCcccCCC
Q 017569          145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED  220 (369)
Q Consensus       145 ~~~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~----~~~~v~~~~~~~~tG~~~~  220 (369)
                             ..++.|+.....|.|+...+++.+++++.++-+      |.+++++.+..    ++++|++....+..|.+.|
T Consensus       129 -------~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap  195 (396)
T d2bwna1         129 -------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP  195 (396)
T ss_dssp             -------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC
T ss_pred             -------cCCCceeehhhhhhccchhhhccccCceEeecc------hHHHhhhHHhhhcccCceeEEEEeeccCcccccc
Confidence                   013577788889999999999999998877644      45666666543    3567888888888999999


Q ss_pred             HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcccccc-CCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcccc
Q 017569          221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE  299 (369)
Q Consensus       221 l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~  299 (369)
                      +++|.++|++|      +++++||.|++.+++.-........+. ...+|.++.+..|.+++..  |+++. +++.. ..
T Consensus       196 l~~l~~L~~~y------~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G--g~v~~-~~~~i-~~  265 (396)
T d2bwna1         196 IKEICDIAEEF------GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA-SARMV-DA  265 (396)
T ss_dssp             HHHHHHHHHHH------TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE-CHHHH-HH
T ss_pred             cHhHHHHhhhh------cceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc--cccch-hHHHH-HH
Confidence            99999999999      999999999998776311110000111 2357999999999986433  45554 33222 22


Q ss_pred             ccc-ccCccCCCCCCccccCCcchhHHHHHHHHHHHhcH-hhHHHH-HhhHHHHHHHHHHHhcCCC
Q 017569          300 LVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EVIPSF-CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       300 ~~~-~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~-~G~~~~-~~~~~a~~l~~~L~~~g~~  362 (369)
                      +.. ...|...        .+.+...+.+.-.+++.+.. ++-+.+ +...+++++++.|.++|+-
T Consensus       266 l~~~~~~~ifS--------talpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~  323 (396)
T d2bwna1         266 VRSYAPGFIFS--------TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMP  323 (396)
T ss_dssp             HHHHCHHHHTS--------BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhhcchhhhc--------ccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            211 1122221        22233334445566666643 344334 7888999999999998763

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=8e-14  Score=129.30  Aligned_cols=240  Identities=15%  Similarity=0.040  Sum_probs=153.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ++++.+.+.+.+.++....++...++..+|++++.+|+.+. +.++     .++++|+|+++++.+++.+          
T Consensus        32 ~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~-----d~I~it~G~~~~l~~l~~~----------   95 (334)
T d2f8ja1          32 PFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSK-----NNVSVGNGADEIIYVMMLM----------   95 (334)
T ss_dssp             CCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCG-----GGEEEEEHHHHHHHHHHHH----------
T ss_pred             CCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCc-----ceEEecCcchhHHHHHhhh----------
Confidence            34567888888888776544445567888888866665432 3333     3589999999988665432          


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHH
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD  226 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~  226 (369)
                             .++|++++|+|..+...++.+|++++.||++++ +..+     ++..+++++++++.|+||||.+.+.++|.+
T Consensus        96 -------~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~-~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~  162 (334)
T d2f8ja1          96 -------FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD-LRIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIER  162 (334)
T ss_dssp             -------SSEEEECSSCCHHHHHHHHHHTCCEEECCCCTT-SCCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             -------ccccccccccccccccchhccCCcccccccccc-cccc-----ccccccceEEEecccccccceeecHHHhhc
Confidence                   368999999999999999999999999999875 3332     224467889999999999999999888887


Q ss_pred             HHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCCCcccccccccC
Q 017569          227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHIN  305 (369)
Q Consensus       227 l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~  305 (369)
                      ++ ++      ++++++|.+|.....  ... ......... -.++.|..|.++ .++.+|+++..+ +.. ..+.....
T Consensus       163 ~~-~~------~~~ii~Dd~~~~~~~--~~~-~~~~~~~~~-~i~~~S~SK~~~~~G~R~G~~~~~~-~~i-~~l~~~~~  229 (334)
T d2f8ja1         163 IL-KT------GAFVALDEAYYEFHG--ESY-VDFLKKYEN-LAVIRTFSKAFSLAAQRVGYVVASE-KFI-DAYNRVRL  229 (334)
T ss_dssp             HH-TT------TCEEEEECTTGGGTC--CCC-GGGGGTCSS-EEEEEESTTTSSCTTTCEEEEEECH-HHH-HHHHHHSC
T ss_pred             cc-cc------eeEEeecccchhhcc--ccc-ccccccCce-EEEEecCccccchhhhhhhhcccch-HHH-HHHHHhhc
Confidence            65 46      889999998765332  111 111111222 234456778644 668999998732 222 22211100


Q ss_pred             ccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCC
Q 017569          306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSY  361 (369)
Q Consensus       306 y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~  361 (369)
                      +       .  ..+.  .....+.+.+.  ..+-+.+.  +..+..+++.+.|+++|+
T Consensus       230 ~-------~--~~s~--~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~g~  274 (334)
T d2f8ja1         230 P-------F--NVSY--VSQMFAKVALD--HREIFEERTKFIVEERERMKSALREMGY  274 (334)
T ss_dssp             T-------T--CSCH--HHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             c-------c--ccch--hhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence            0       0  0111  11122222222  23334444  667777889999999874

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.3e-13  Score=128.19  Aligned_cols=222  Identities=14%  Similarity=0.012  Sum_probs=159.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++-|.+.       .+.+++|+.|+..++.++...             ++.|+++...|.....
T Consensus        57 nPt~~~le~~----la~LEg~~~-------a~~~~SGMaAi~~~l~~l~~~-------------Gd~iv~~~~~Yg~T~~  112 (391)
T d1cl1a_          57 TLTHFSLQQA----MCELEGGAG-------CVLFPCGAAAVANSILAFIEQ-------------GDHVLMTNTAYEPSQD  112 (391)
T ss_dssp             CHHHHHHHHH----HHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTSCHHHHH
T ss_pred             ChhHHHHHHH----HHHHhCCcc-------EEEeccccceeeehhhcccCC-------------CCeEEEecccccchhh
Confidence            3566667766    889988864       788999999999888887542             4789999888766444


Q ss_pred             H----HhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 F----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ~----~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                      .    +...|+++.+++..      |.++++++++++|++|++-.|+||+..+.|+++|+++|+++..    ++.++||.
T Consensus       113 l~~~~l~~~Gi~~~~~d~~------d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~----g~~~vVDn  182 (391)
T d1cl1a_         113 FCSKILSKLGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP----DAIIMIDN  182 (391)
T ss_dssp             HHHHTGGGGTCEEEEECTT------CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT----TCEEEEEC
T ss_pred             hhhhcccccccccccccCc------cccccccccccccceeeecccCcccccccccHHHHHHHHhccC----CcEEEEec
Confidence            3    44568888777643      4577889999999999999999999999999999999976411    89999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCC--eEEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++.++.  ..|   ++   .|+|.+.-|.-||+++...  .|+++. +.+.. ..+.......+          .  ..
T Consensus       183 T~atP~~--~~P---l~---~GaDivvhS~TKy~~GhsdvlgG~vv~-~~~~~-~~~~~~~~~~G----------~--~~  240 (391)
T d1cl1a_         183 TWAAGVL--FKA---LD---FGIDVSIQAATKYLVGHSDAMIGTAVC-NARCW-EQLRENAYLMG----------Q--MV  240 (391)
T ss_dssp             TTTTTTS--SCG---GG---GTCSEEEEETTTTTTCSSSCCCEEEEE-CTTTH-HHHHHHHHHTT----------C--CC
T ss_pred             cccchhh--hcc---cc---cccceEEeecchhccccccccccceec-ccccc-ccchhhhhccc----------c--cC
Confidence            9876443  222   23   2899999999999987654  355544 44332 11111111111          1  12


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhcCCCccccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHSSYFYDTLH  367 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~g~~~~~~~  367 (369)
                      .+..+|..++.+..-.++-.++.++|..++++|++++.+++-+|
T Consensus       241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~y  284 (391)
T d1cl1a_         241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNH  284 (391)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            35678877776655444433999999999999999998876554

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=1.6e-13  Score=124.13  Aligned_cols=255  Identities=10%  Similarity=-0.024  Sum_probs=146.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .++|.+.+++.++.......|.    ..++.+++++.+++++|+++     ..+++|+||||||..++..+...      
T Consensus        11 g~~P~v~eAl~~~~~~~~~~y~----~~~~~~~lr~~ia~~~g~~~-----~~v~~tsggtean~~a~~~~~~~------   75 (340)
T d1svva_          11 GMHPKILDLMARDNMTQHAGYG----QDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP------   75 (340)
T ss_dssp             CCCHHHHHHHHHHTTCCCCSTT----CSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHHHHHhhcCCCCCC----CCHHHHHHHHHHHHHhCCCc-----ceEEEcCCHHHHHHHHHHHHhhh------
Confidence            3468889998877544433332    23455677888999999986     35999999999999988876542      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhc------CcEEEEeeCCCCcccC--
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEF--  218 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~------~~~v~~~~~~~~tG~~--  218 (369)
                             +.+++.+...|.++.......+.....+.........+.+...++....      +..+++...+++.|.+  
T Consensus        76 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (340)
T d1svva_          76 -------WEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYT  148 (340)
T ss_dssp             -------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCC
T ss_pred             -------ccccccccccceeeeecccccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccccccccccc
Confidence                   3578888888887766555544443333333222344555554444331      2334444445555655  


Q ss_pred             -CCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEEEEeCCCCcc
Q 017569          219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP  297 (369)
Q Consensus       219 -~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~  297 (369)
                       +++..+.+.|+++      +.++|+|+++++...+...............+.....+.|.+..+.  +.......... 
T Consensus       149 ~~~~~~~~~~~~~~------g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-  219 (340)
T d1svva_         149 KQELEDISASCKEH------GLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG--EALIILNDALK-  219 (340)
T ss_dssp             HHHHHHHHHHHHHH------TCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC--EEEEECSGGGC-
T ss_pred             HHHhhhhhcccccc------cceeeeeccceeeeecccccccccccccccceeeecCCcccccccc--ccccccchhhh-
Confidence             4577788999999      9999999999876553222111111112234566666777654433  23333222111 


Q ss_pred             cccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       298 ~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ........+..         ++.+.. .....+.+..+...+....  +...++.++++.|++.|+-
T Consensus       220 ~~~~~~~~~~~---------~~~~~~-~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  276 (340)
T d1svva_         220 PNARHLIKQRG---------ALMAKG-WLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIR  276 (340)
T ss_dssp             TTHHHHHHHTT---------CCCTTT-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhccccc---------Cccchh-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCe
Confidence            11100000110         122221 1222233334444555555  8889999999999998763

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=2.5e-14  Score=131.13  Aligned_cols=187  Identities=11%  Similarity=0.019  Sum_probs=123.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      .|+|++.+++.++.. +...|+..|...+||++    +++++|.+.       +++++|||+||..++.+++..      
T Consensus        11 ~p~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~----lA~~~G~~~-------~~~~~sGt~A~~~al~a~~~~------   72 (343)
T d1m6sa_          11 KPTEEMRKAMAQAEV-GDDVYGEDPTINELERL----AAETFGKEA-------ALFVPSGTMGNQVSIMAHTQR------   72 (343)
T ss_dssp             CCCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHHHHHHCCT------
T ss_pred             CCCHHHHHHHHhhhc-CCcccCCCHHHHHHHHH----HHHHHCCCe-------EEEeCCHHHHHHHHHHHHhcc------
Confidence            346788888876532 22234556777778766    889999874       799999999999999887552      


Q ss_pred             hcCCCCCCCeEEecCCCcchHHHHHhhhc-ceeEEEeccCCccccCHHHHHHHHhhcC------c-EEEEeeCCCCcccC
Q 017569          147 EQGKPYDKPNIVTGANVQVCWEKFARYFE-VELKEVKLEEGYYVMNPVKAVELVDENT------I-CVAAILGSTLTGEF  218 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~h~s~~~~~~~~G-~~v~~v~~~~~~~~~d~~~L~~~i~~~~------~-~v~~~~~~~~tG~~  218 (369)
                             ++.+++....|+++.......+ ......+++.+.+..|++.+++.+...+      . +++...++++.|.+
T Consensus        73 -------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (343)
T d1m6sa_          73 -------GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRV  145 (343)
T ss_dssp             -------TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBC
T ss_pred             -------CCceeccccccceeeecccccccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCcee
Confidence                   4678888888877655443322 2233344433346889999999997642      2 44555566666666


Q ss_pred             C---CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeE
Q 017569          219 E---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG  286 (369)
Q Consensus       219 ~---~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g  286 (369)
                      .   ++++|+++|+++      ++++|+|++++++..+.....  ........+..+++.+|.+++..+.+
T Consensus       146 ~~~~~l~~i~~~~~~~------g~~~~~D~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~  208 (343)
T d1m6sa_         146 VPLENIKEICTIAKEH------GINVHIDGARIFNASIASGVP--VKEYAGYADSVMFCLSKGLCAPVGSV  208 (343)
T ss_dssp             CCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCCSSCEE
T ss_pred             cCHHHHHHHHHHHHhc------CeEEEeccccccccccccccc--hhhhcccccccccccccccccccccc
Confidence            4   566788888999      999999999987655321111  11112245667777777776665543

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.4e-14  Score=133.10  Aligned_cols=270  Identities=10%  Similarity=-0.114  Sum_probs=164.1

Q ss_pred             ccccccccCCChHHHHHHHHHHhcc-CCCCC---C---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINK-NYVDM---D---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~-n~~~~---~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      |||+. .|...|+.|.+++.+.+.+ +....   .   .++...++-+++++.+++++|++.+    ..+++++|+++++
T Consensus         3 ~nF~p-GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~----~~v~~~~gs~t~~   77 (360)
T d1bjna_           3 FNFSS-GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN----YKVLFCHGGGRGQ   77 (360)
T ss_dssp             EECCS-SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHH
T ss_pred             EEeCC-CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEECCchHHH
Confidence            45433 3334468899988886632 11110   1   2466778888999999999999752    3578888888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEE
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      ..+.......            .+..+++....+..  +...++..|..++.+..+.+ ...+.+.+++.+.++++++.+
T Consensus        78 ~~a~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v  144 (360)
T d1bjna_          78 FAAVPLNILG------------DKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTV-DGLRAVKPMREWQLSDNAAYM  144 (360)
T ss_dssp             HHHHHHHHCT------------TCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEE-TTEEEECCGGGCCCCSSCSCE
T ss_pred             Hhhhhhcccc------------cccccceecccchhhhhHHHHhhcCccceeeccccC-CCcchhhhhhhhccCCceeEE
Confidence            7665443221            23456655544433  55566666776666665443 456667777778888888889


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ++.+|.||...|+..+.  ++.+      ++.+++|++++.+..         +++...+|...+++||++++|++.+++
T Consensus       145 ~~~~~~t~~~~~~~~i~--~~~~------~~~v~vDa~~~~~~~---------~vd~~~~dv~~~ss~k~~~~~~~~~~~  207 (360)
T d1bjna_         145 HYCPNETIDGIAIDETP--DFGA------DVVVAADFSSTILSR---------PIDVSRYGVIYAGAQKNIGPAGLTIVI  207 (360)
T ss_dssp             EECSEETTTTEECCCCC--CCCT------TCCEEEECTTTTTSS---------CCCGGGCSEEEEETTTTTSSTTCEEEE
T ss_pred             EecccccccCcccccee--cccc------cceeeeeeeccccce---------eeeeccceeEEEEcccccccCCCceeE
Confidence            99999999998877664  3455      889999999886433         333346899999999999999999888


Q ss_pred             EEeCCCCcccccccccCccCCCCCCc-cccCCcchhHHHHHHHHHHHhcHhhHHHH--HhhHHHHHHHHHHHhcCCC
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTF-TLNFSKGSSQIIAQYYQFIRLGFEVIPSF--CCVDHKKLSSFFVIHSSYF  362 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~-~l~~tr~~~~~l~~~~~l~~lg~~G~~~~--~~~~~a~~l~~~L~~~g~~  362 (369)
                      ++...............+........ ....+............+......+....  +..+.+.++...+...+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
T d1bjna_         208 VREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFY  284 (360)
T ss_dssp             EEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred             eeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccc
Confidence            87654332111000000000000000 00112222222333333333444455544  6777777777777665543

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.6e-13  Score=127.70  Aligned_cols=222  Identities=18%  Similarity=0.090  Sum_probs=149.5

Q ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcchHHH
Q 017569           90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s~~~  169 (369)
                      .|....||+.    ++++-|.+.       .+.+++|+.|+..+ ..+..             .++.|+++...|.....
T Consensus        54 nPT~~~lE~~----la~LE~~~~-------a~~~sSGmaAi~~~-l~~l~-------------~gd~iv~~~~~yg~t~~  108 (393)
T d1n8pa_          54 NPNRENLERA----VAALENAQY-------GLAFSSGSATTATI-LQSLP-------------QGSHAVSIGDVYGGTHR  108 (393)
T ss_dssp             CHHHHHHHHH----HHHHTTCSE-------EEEESCHHHHHHHH-HHTSC-------------SSCEEEEESSCCHHHHH
T ss_pred             ChHHHHHHHH----HHHHhCCce-------EEEecCchhHHHhh-hhccc-------------CCCeeeeeeeecccchh
Confidence            3566677766    888988764       67788888777543 33322             14678887776655433


Q ss_pred             ----HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeec
Q 017569          170 ----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA  245 (369)
Q Consensus       170 ----~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~  245 (369)
                          .+..+|+++.+++.       +.++++++++++|++|++-.|+||+..+.|+++|+++|+++..  ..+++++||.
T Consensus       109 ~~~~~l~~~gi~~~~~~~-------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~--~~g~~lvVDn  179 (393)
T d1n8pa_         109 YFTKVANAHGVETSFTND-------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDN  179 (393)
T ss_dssp             HHHHTSTTTCSCCEEESS-------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEEC
T ss_pred             hhhhhhhcccceeEEeec-------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcc--cCCceEEEec
Confidence                33456777776641       3478999999999999999999999999999999999994310  0089999999


Q ss_pred             ccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCe--EEEEEeCCCCcccccccccCccCCCCCCccccCCcchh
Q 017569          246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS  323 (369)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~  323 (369)
                      .++..+.  .+|   +++   |+|.+.-|.-|++++....  |+++.++.+.. ..+......++.            ..
T Consensus       180 T~atP~~--~~P---l~~---GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~-~~l~~~~~~~G~------------~~  238 (393)
T d1n8pa_         180 TFLSPYI--SNP---LNF---GADIVVHSATKYINGHSDVVLGVLATNNKPLY-ERLQFLQNAIGA------------IP  238 (393)
T ss_dssp             TTTHHHH--CCG---GGG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHHCC------------CC
T ss_pred             CccCccc--CCc---hhh---CCCEEEEccccccCCCCccccceeeecchhHH-HHHHHHHhhcCC------------CC
Confidence            9876443  222   232   8999999999999776443  66655543221 111111111111            11


Q ss_pred             HHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc-CCCcccc
Q 017569          324 QIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS-SYFYDTL  366 (369)
Q Consensus       324 ~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~-g~~~~~~  366 (369)
                      .+..+|..++.+..-.++-.++.++|..++++|++. +.+++-+
T Consensus       239 ~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~  282 (393)
T d1n8pa_         239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVN  282 (393)
T ss_dssp             CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEE
T ss_pred             ChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEe
Confidence            356788877777654444339999999999999875 5555543

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.45  E-value=1.3e-13  Score=128.85  Aligned_cols=197  Identities=11%  Similarity=-0.047  Sum_probs=132.8

Q ss_pred             ccccccccCCChHHHHHHHHHHhccC----CCCCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHH
Q 017569           58 LNLASFVTTWMEPECDKLVMASINKN----YVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI  130 (369)
Q Consensus        58 ~~l~~~~~~~~~~~v~~~~~~~~~~n----~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~  130 (369)
                      |||+. .|...++.|.++|.+.+-+.    .....   .++...++.+++++.+++++|.+.+    ...++++|+++++
T Consensus         5 ~~F~p-GP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~----~~i~~~~gs~t~~   79 (361)
T d2c0ra1           5 YNFNA-GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG----YKVLFIQGGASTQ   79 (361)
T ss_dssp             EECCS-SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS----EEEEEESSHHHHH
T ss_pred             cccCC-CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEECCCchHH
Confidence            55433 33345688999988765321    11001   2467888999999999999999752    4578888887777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcc--hHHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEE
Q 017569          131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA  208 (369)
Q Consensus       131 ~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~--s~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~  208 (369)
                      ..+......            .++.++++....+.  .+...++..|..+..++.+.. ..++++.+++.+..++.    
T Consensus        80 ~ea~~~~l~------------~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  142 (361)
T d2c0ra1          80 FAMIPMNFL------------KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEAS-NYMTLPKLQEIQLQDNA----  142 (361)
T ss_dssp             HHHHHHHHC------------CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGG-TTCSCCCGGGCCCCTTE----
T ss_pred             HHHHHhccc------------cCCCceEEEeechhhhhhhhhhhhcCceeeeeccccc-cccchhhhhhhcccCcc----
Confidence            655443321            11244444433333  366677888999888888753 57777878777665543    


Q ss_pred             eeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       209 ~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ++.+|.||...|+++|.++|+++      +++++||++++.+..       ++++.  .+|....++||+++.|++.+++
T Consensus       143 ~~v~~~tg~~~~~~~i~~~~~~~------~al~~vDavss~g~~-------~id~~--~~di~~~s~~k~~~~~~~~~~~  207 (361)
T d2c0ra1         143 AYLHLTSNETIEGAQFKAFPDTG------SVPLIGDMSSDILSR-------PFDLN--QFGLVYAGAQKNLGPSGVTVVI  207 (361)
T ss_dssp             EEEEEESEETTTTEECSSCCCCT------TSCEEEECTTTTTSS-------CCCGG--GCSEEEEETTTTTCCSSCEEEE
T ss_pred             eEEEEecccceecceEEEeeccC------CceEEEEeecccccc-------ccccc--cceeEEEecccccccccCcEEE
Confidence            23457789999999999999999      999999999987655       23443  3455566789998777766655


Q ss_pred             EEe
Q 017569          289 VWR  291 (369)
Q Consensus       289 ~~~  291 (369)
                      +..
T Consensus       208 ~~~  210 (361)
T d2c0ra1         208 VRE  210 (361)
T ss_dssp             EEG
T ss_pred             EEh
Confidence            543

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.34  E-value=8.2e-13  Score=123.00  Aligned_cols=199  Identities=7%  Similarity=-0.113  Sum_probs=124.2

Q ss_pred             CccccccccCCChHHHHHHHHHHhccCCC----CCC---CCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHH
Q 017569           57 RLNLASFVTTWMEPECDKLVMASINKNYV----DMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA  129 (369)
Q Consensus        57 ~~~l~~~~~~~~~~~v~~~~~~~~~~n~~----~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a  129 (369)
                      .|||+. .|...|++|.+++.+.+.+...    ...   .++...++.+++++.+++++|++.+    ..+++++|++++
T Consensus         4 ~~nF~p-GP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~----~~i~~~~gt~~~   78 (360)
T d1w23a_           4 VFNFNA-GPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND----YQILFLQGGASL   78 (360)
T ss_dssp             CEECCS-SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHH
T ss_pred             eeEeCC-CCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC----CEEEEeCCcHHH
Confidence            355433 3444568899998876532110    000   2456778888999999999999853    347778787777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCeEEecCCCcch--HHHHHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEE
Q 017569          130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA  207 (369)
Q Consensus       130 ~~~al~~~~~~~~~~~~~~g~~~~~~~Vi~s~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~  207 (369)
                      +..+.......            .+..+++....|.+  +...+...+..++.+..... ...+++.+++.    .+.+.
T Consensus        79 ~~~~~~~~~~~------------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~  141 (360)
T d1w23a_          79 QFTMLPMNLLT------------KGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKAN-SYQSIPDFSEF----QLNEN  141 (360)
T ss_dssp             HHHHHHHHHCC------------TTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGG-TSCSCCCGGGC----CCCTT
T ss_pred             HHHHHHhhhcc------------cCcccceeeccchhhhhHHHHHHhhhcceeeccccc-cccchhhhhhc----ccccc
Confidence            76554443221            13455554444433  44455556666655554321 12233333332    22223


Q ss_pred             EeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCCCCeEE
Q 017569          208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW  287 (369)
Q Consensus       208 ~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p~g~g~  287 (369)
                      .++.+|.||.+.|+++|+++|+++      |+++++|++++.+..       +++++..++|.++.+.||+  .|++.|+
T Consensus       142 ~~~~~~~tg~~~~~~~i~~~~~~~------g~l~ivDavqs~g~~-------~id~~~~~vd~~~~~~~k~--~~~~~~~  206 (360)
T d1w23a_         142 DAYLHITSNNTIYGTQYQNFPEIN------HAPLIADMSSDILSR-------PLKVNQFGMIYAGAQKNLG--PSGVTVV  206 (360)
T ss_dssp             EEEEEEESEETTTTEECSSCCCCC------SSCEEEECTTTTTSS-------CCCGGGCSEEEEETTTTTS--CTTCEEE
T ss_pred             cceeEecCCccccceeeeeccccc------eeeEEeecccccccc-------ccccccccceEEeeccccc--cCCccee
Confidence            445678889999999999999999      999999999987655       3555555778887776665  4556666


Q ss_pred             EEEeC
Q 017569          288 VVWRT  292 (369)
Q Consensus       288 l~~~~  292 (369)
                      ++.+.
T Consensus       207 ~~~~~  211 (360)
T d1w23a_         207 IVKKD  211 (360)
T ss_dssp             EEEHH
T ss_pred             eEech
Confidence            66543

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.23  E-value=9.1e-12  Score=118.79  Aligned_cols=164  Identities=13%  Similarity=0.079  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHhcCCC---CCCCeEEecCCCcchHHH
Q 017569           93 TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP---YDKPNIVTGANVQVCWEK  169 (369)
Q Consensus        93 ~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~~g~~---~~~~~Vi~s~~~h~s~~~  169 (369)
                      ..+|++++++.....-|...   +...+++++|+++++..++.++...        +..   ..+++|+++.|+|+.|..
T Consensus       102 ~~~L~~~i~~lh~~~gna~t---~~~~IvvG~Gsteli~~~~~AL~~~--------~~~~~~~pg~~Vv~~~P~y~~Y~~  170 (425)
T d2hoxa1         102 SFELEKTIKELHEVVGNAAA---KDRYIVFGVGVTQLIHGLVISLSPN--------MTATPDAPESKVVAHAPFYPVFRE  170 (425)
T ss_dssp             CHHHHHHHHHHHHHHTCBCC---TTCEEEEESHHHHHHHHHHHHHSCC--------TTTCTTSCCEEEEECSSCCHHHHH
T ss_pred             CHHHHHHHHHHHhhhCCCCC---CCCEEEECCCHHHHHHHHHHHhccc--------cccccCCCCCEEEEecCccccHHH
Confidence            46888887775554333332   1245999999999999999887431        100   123589999999999999


Q ss_pred             HHhhhcceeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCCCcccCCCHHHHHHHHHHhhhccCCCceEEeeccccc
Q 017569          170 FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG  249 (369)
Q Consensus       170 ~~~~~G~~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~  249 (369)
                      .++++|.....       +.+|.+.++++++++++++++++||||||.+..       +-.+      ++++++|.+|.+
T Consensus       171 ~~~~~~~~~~~-------~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~------~~~~I~DEaY~~  230 (425)
T d2hoxa1         171 QTKYFDKKGYV-------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIK------GCKSIYDMVYYW  230 (425)
T ss_dssp             HHHHSCBTTEE-------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSST------TCEEEEECTTCS
T ss_pred             HHHHcCCCCCc-------cCCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhh------CCEEEEeccccC
Confidence            99998876443       556667788888889999999999999998731       1124      889999999965


Q ss_pred             ccccccCCCccccccCCCCcEEEEcCccCCC-CCCCeEEEEEeCCC
Q 017569          250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKD  294 (369)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~-~p~g~g~l~~~~~~  294 (369)
                      ..+   .+.   .... .=+.+..+.-|..+ +++..|+++++++.
T Consensus       231 ~~f---~~~---~~~~-~~~Ivl~S~SK~fglaGlRiGw~i~~~~~  269 (425)
T d2hoxa1         231 PHY---TPI---KYKA-DEDILLFTMSKFTGHSGSRFGWALIKDES  269 (425)
T ss_dssp             TTT---SCC---CSCB-CCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred             ccc---cch---hhhc-CCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence            322   111   1111 12455566778754 78999999887653

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.95  E-value=3.7e-08  Score=93.55  Aligned_cols=247  Identities=12%  Similarity=-0.058  Sum_probs=138.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++.......    ......+.+.+.++.+..      ....++++|+||+..|++.++...     
T Consensus        68 h~hp~i~~ai~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~------~~v~f~~sGseA~e~Alk~ar~~t-----  132 (427)
T d2gsaa_          68 HAHPEVIEALKVAMEKGTSFGAP----CALENVLAEMVNDAVPSI------EMVRFVNSGTEACMAVLRLMRAYT-----  132 (427)
T ss_dssp             BTCHHHHHHHHHHHTTCSCCSSC----CHHHHHHHHHHHHHSTTC------SEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHhcCccccc----hhHHHHHHHHHHhhCCcc------ccccccCCcHHHHHHHHHHHHHhc-----
Confidence            34688999999888764332211    123444556677765432      247899999999999999987642     


Q ss_pred             hcCCCCCCCeEEecCCC-cchHHHHHhh-------hcce----------eEEEeccCCccccCHHHHHHHHhh---cCcE
Q 017569          147 EQGKPYDKPNIVTGANV-QVCWEKFARY-------FEVE----------LKEVKLEEGYYVMNPVKAVELVDE---NTIC  205 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~~-h~s~~~~~~~-------~G~~----------v~~v~~~~~~~~~d~~~L~~~i~~---~~~~  205 (369)
                        |    +.+|+.-..+ |-....++..       .+..          ...+.+.    .-|+++|++.+++   +..+
T Consensus       133 --~----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~le~~~~~~~~~iaa  202 (427)
T d2gsaa_         133 --G----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP----YNDLEAVKALFAENPGEIAG  202 (427)
T ss_dssp             --C----CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC----TTCHHHHHHHHTTSTTTEEE
T ss_pred             --C----CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC----cchHHHHHHHHHhCCCCeEE
Confidence              1    4566654443 3221111111       1111          0111111    2378999999985   3456


Q ss_pred             EEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCC
Q 017569          206 VAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV  281 (369)
Q Consensus       206 v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~  281 (369)
                      |++.--....|.+-|    +++|.++|+++      ++++++|+++.|+-..   ....++..-...|.+++  .|.+++
T Consensus       203 vi~Epi~g~~G~~~~~~~~l~~l~~lc~~~------~~llI~DEv~tG~r~g---~~~~~~~~gi~PDi~~~--gK~lgg  271 (427)
T d2gsaa_         203 VILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTL--GKIIGG  271 (427)
T ss_dssp             EEECSSBCSSSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBTTTB---TTCHHHHTTCCCSEEEE--CGGGGT
T ss_pred             EEEcCCcCCCCCccCCHHHHHHHHHHHHHh------ceeeeeccccccceec---ccchHHhcCCCHHHHhh--hhccCC
Confidence            666555555577765    99999999999      9999999999774221   11111111124688774  455555


Q ss_pred             CCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       282 p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ....|.++.+++ .. +.+.....+. .. .++    +-+....++.-++|+.+.++++.+ +..++.++|++.|++
T Consensus       272 G~p~~a~~~~~~-i~-~~~~~~~~~~-~~-~T~----~gnpla~AAala~Le~i~~~~l~~-~~~~~g~~l~~~L~~  339 (427)
T d2gsaa_         272 GLPVGAYGGKRE-IM-QLVAPAGPMY-QA-GTL----SGNPLAMTAGIKTLELLRQPGTYE-YLDQITKRLSDGLLA  339 (427)
T ss_dssp             TSCCEEEEECHH-HH-TTBTTTSSBC-CC-CTT----TTCHHHHHHHHHHHHHHTSTTHHH-HHHHHHHHHHHHHHH
T ss_pred             CcceeeeeehHH-HH-HHhcccCCCc-CC-CCC----CCCchhhHHHHHhhHHhhhhhHHh-hhhHHHHHHHHHHHH
Confidence            555566776543 21 1211111111 00 111    111222444456666676666543 666677777777754

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=3.6e-08  Score=92.36  Aligned_cols=246  Identities=12%  Similarity=-0.022  Sum_probs=142.2

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++........+  .+.+.++.+.+.+......     ....++++|+||+..|++.+|...     
T Consensus        53 h~hp~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~-----~~v~f~~sGseA~e~Aik~Ar~~t-----  120 (387)
T d1vefa1          53 HGNPEVVEAVKRQAETLMAMPQTLP--TPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAHT-----  120 (387)
T ss_dssp             BTCHHHHHHHHHHHHHCCCCCTTSC--CHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHhhcccccccC--CchHHHHHHHhhhhccccc-----eeeccccCchHHHHHHHHHHHhhc-----
Confidence            3458888888888866433222222  2333344444555433321     247889999999999999998742     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc------------eeEEEeccCCccccCHHHHHHHHhhcCcEEEEeeCCC
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST  213 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~------------~v~~v~~~~~~~~~d~~~L~~~i~~~~~~v~~~~~~~  213 (369)
                        |    +.+|+.-.. .|-....+....|-            .+..+|.+      |.+.|++.++++..+|++.--..
T Consensus       121 --~----r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~------d~~~l~~~~~~~iAavi~EPi~g  188 (387)
T d1vefa1         121 --G----RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN------DVEALKRAVDEETAAVILEPVQG  188 (387)
T ss_dssp             --S----CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT------CHHHHHHHCCTTEEEEEECSEET
T ss_pred             --c----cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC------CHHHHHHhcCCCeEEEEEECCCC
Confidence              1    346665444 34333333332221            23444432      68899999988887777655444


Q ss_pred             CcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCcc-ccccCCCCcEEEEcCccCCCCCCCeEEE
Q 017569          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWV  288 (369)
Q Consensus       214 ~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~Dsi~~~~hK~l~~p~g~g~l  288 (369)
                      ..|.+.+    +++|.++|+++      |+++++|+++.|+..  ...... ..+.+ ..|.++  ..|.+.+....+.+
T Consensus       189 ~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tGfgR--~G~~~~~~~~~v-~PDi~~--~gK~l~gG~~~~~~  257 (387)
T d1vefa1         189 EGGVRPATPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGI-VPDILT--LAKALGGGVPLGVA  257 (387)
T ss_dssp             TTTSEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEE--ECGGGGTTSSCEEE
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CceEEecccccccCc--cCCCcccccCCc-CCceee--ecccCCCCcccccc
Confidence            4566544    99999999999      999999999977532  111001 11112 368887  45776666666777


Q ss_pred             EEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       289 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +.+++ .. ..+  ...+.++   ++  .|.  .....+..+.|+.+..+.+.+ +..++.+++++.|+++
T Consensus       258 ~~~~~-~~-~~~--~~~~~g~---T~--~gn--Pla~aaa~a~L~~l~~~~~~~-~v~~~g~~l~~~L~~l  316 (387)
T d1vefa1         258 VMREE-VA-RSM--PKGGHGT---TF--GGN--PLAMAAGVAAIRYLERTRLWE-RAAELGPWFMEKLRAI  316 (387)
T ss_dssp             EEEHH-HH-HTS--CTTSSCC---SS--TTC--HHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHTS
T ss_pred             cccee-ee-ecc--ccCCccc---cC--CCC--cchhhhcccchhhcccccccc-hHhhhhHHHHHHHHhc
Confidence            66542 11 111  1111111   11  111  122344445566665444322 6777889999999875

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.1e-07  Score=87.59  Aligned_cols=253  Identities=11%  Similarity=-0.066  Sum_probs=143.8

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++-........  ......+.+.+.++.+.+.       ..++++|+||+..|++.++......  
T Consensus        57 h~~p~i~~Av~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------v~~~~sGseA~e~Aik~ar~~~~~~--  125 (404)
T d2byla1          57 HCHPKIVNALKSQVDKLTLTSRAFY--NNVLGEYEEYITKLFNYHK-------VLPMNTGVEAGETACKLARKWGYTV--  125 (404)
T ss_dssp             BTCHHHHHHHHHHHTTCCCCCTTEE--ESSHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHHT--
T ss_pred             CCCHHHHHHHHHHHhhCCCcccccc--cchHHHHHHhhhhcccccc-------cccccCccccchhHHHHHHHHhhhc--
Confidence            3468889998888865332211111  1122234455778877764       7899999999999999988753221  


Q ss_pred             hcCCCCCCCeEEe-cCCCcchHHHHHhhhc-------c-----eeEEEeccCCccccCHHHHHHHHhhc-CcEEEEeeCC
Q 017569          147 EQGKPYDKPNIVT-GANVQVCWEKFARYFE-------V-----ELKEVKLEEGYYVMNPVKAVELVDEN-TICVAAILGS  212 (369)
Q Consensus       147 ~~g~~~~~~~Vi~-s~~~h~s~~~~~~~~G-------~-----~v~~v~~~~~~~~~d~~~L~~~i~~~-~~~v~~~~~~  212 (369)
                       .+....+..++. ....|.....+....+       .     .+..+|.+      |++++++++.+. ..+|++--..
T Consensus       126 -~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~------d~~~l~~~l~~~~iAaviiEPi~  198 (404)
T d2byla1         126 -KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------DLPALERALQDPNVAAFMVEPIQ  198 (404)
T ss_dssp             -TCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT------CHHHHHHHHTSTTEEEEEECSSB
T ss_pred             -cccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc------CHHHHHHhcCCCCeEEEEECCcc
Confidence             111112334544 4444543333322211       1     13334432      688999999764 4455554444


Q ss_pred             CCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEE
Q 017569          213 TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGW  287 (369)
Q Consensus       213 ~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~  287 (369)
                      ...|.+.+    +++|.++|+++      ++++|+|+++.|+..  ...-..+...-...|.++  ..|.+++. ...|.
T Consensus       199 g~~G~~~~~~~~l~~l~~lc~~~------g~llI~DEV~tGfgR--~G~~~a~~~~gv~PDi~~--~gK~l~gG~~p~~a  268 (404)
T d2byla1         199 GEAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENVRPDIVL--LGKALSGGLYPVSA  268 (404)
T ss_dssp             TTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEE
T ss_pred             CCCCCccCCHHHHHHHHHHHHhc------CeEEEeecccccccc--ccccchhhhcCCCCCEEE--ECchhhCCCcccee
Confidence            45565533    99999999999      999999999876433  111111111111358877  45766554 56677


Q ss_pred             EEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       288 l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      ++.++. .. +.+  .....+   .++  .|  +....++..++|+.+..+.+.+ +..++.+++++.|+++
T Consensus       269 v~~~~~-i~-~~~--~~~~~~---~T~--~g--npl~~aaa~a~L~~i~~~~l~~-~~~~~g~~l~~~l~~l  328 (404)
T d2byla1         269 VLCDDD-IM-LTI--KPGEHF---STY--GG--NPLGCRVAIAALEVLEEENLAE-NADKLGIILRNELMKL  328 (404)
T ss_dssp             EEECHH-HH-TTS--CTTSSC---CSS--TT--CHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHTS
T ss_pred             eeechh-hh-hcc--CCCCCC---cCC--Cc--CHHHHHHHHHHHHHHHhcCchh-hhhHhhHHHHHHHHhh
Confidence            877542 11 111  111111   111  12  1223455667777777766654 6667788999998875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.8e-06  Score=80.19  Aligned_cols=254  Identities=10%  Similarity=-0.067  Sum_probs=136.7

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.+|.+.+++.+.+....+.. ......+.+.++.+.+.+++..+.    .....++++|+||+..|++.++...     
T Consensus        56 h~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~----~~~v~f~~sGseA~e~Alk~ar~~t-----  125 (425)
T d1sffa_          56 HLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAAT-----  125 (425)
T ss_dssp             BTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHhhcCCcc-cccccCcHHHHHHHHHHhhhhhcc----cceeeeeccccchhhhHHHHhhhhh-----
Confidence            346888999998887643221 122233444567777888875432    1247889999999999999988752     


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccC---CccccCH-HHHHHHHh-----hcC
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEE---GYYVMNP-VKAVELVD-----ENT  203 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~---~~~~~d~-~~L~~~i~-----~~~  203 (369)
                        |    +.+|+.-.. .|-....+....|-             .....+...   +...... +..++.+.     .+.
T Consensus       126 --~----r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  199 (425)
T d1sffa_         126 --K----RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDI  199 (425)
T ss_dssp             --T----CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGE
T ss_pred             --c----ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccce
Confidence              1    456665444 44333333333221             122222211   1111111 11112111     134


Q ss_pred             cEEEEeeCCCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          204 ICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       204 ~~v~~~~~~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      .+|++.--....|.+.    -++.|.++|+++      |+++++|+++.|+..  ......+...-...|.++  ..|.+
T Consensus       200 aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~------gillI~DEV~tG~gR--~g~~~a~~~~gv~PDi~~--~gK~l  269 (425)
T d1sffa_         200 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLTT--FAKSI  269 (425)
T ss_dssp             EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEEE--ECGGG
T ss_pred             EEEEecCccCCCCcccCCHHHHHHHHHHHHHc------CceEEeccccccCCC--cchhhHHHhcCCCcccee--ccccc
Confidence            5666554444556553    389999999999      999999999887433  111111111112468888  56887


Q ss_pred             CCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHHh
Q 017569          280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVIH  358 (369)
Q Consensus       280 ~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~~  358 (369)
                      ++.+..|.++.+++ .. +.+  .....+   .++    +-+....++..++|+.+.++.+.+ +..++.+++++.|++
T Consensus       270 ~gG~P~~av~~~~~-i~-~~~--~~~~~~---~T~----~gnpl~~aaa~a~L~~i~~~~~~~-~~~~~g~~l~~~l~~  336 (425)
T d1sffa_         270 AGGFPLAGVTGRAE-VM-DAV--APGGLG---GTY----AGNPIACVAALEVLKVFEQENLLQ-KANDLGQKLKDGLLA  336 (425)
T ss_dssp             GTSSCCEEEEEEHH-HH-TTS--CTTSBC---CSS----SSCHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEcHH-HH-Hhh--CCCCCC---CCC----CcCHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhhhhhh
Confidence            77777888988764 11 111  111111   121    111223455556677776655544 445555566555443

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.57  E-value=1.5e-05  Score=74.53  Aligned_cols=197  Identities=11%  Similarity=-0.066  Sum_probs=108.6

Q ss_pred             ChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHHh
Q 017569           68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE  147 (369)
Q Consensus        68 ~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~~  147 (369)
                      .+|.+.+++.+.+++-......+ .... ...+.+.+.++.+.+.       ..++.+|++|+..+++.++.......  
T Consensus        56 ~~p~v~~Ai~~q~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-------v~~~~sgs~a~~~a~k~ar~~~~~~~--  124 (404)
T d1z7da1          56 CHPNILNAMINQAKNLTICSRAF-FSVP-LGICERYLTNLLGYDK-------VLMMNTGAEANETAYKLCRKWGYEVK--  124 (404)
T ss_dssp             TCHHHHHHHHHHHTTCSCCCTTS-EEHH-HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHHTS--
T ss_pred             CcHHHHHHHHHHHHhCCCccccc-chHH-HHHHHHhhhhccccce-------eeeeccccchHHHHHHHHHHHHhhcc--
Confidence            46888888888876533222111 1112 2234455777777653       78999999999999999887533210  


Q ss_pred             cCCCCCCCeEEecCCC-cchHHHHHhhhcce------------eEEEeccCCccccCHHHHHHHHhhc-CcEEEEeeCCC
Q 017569          148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDEN-TICVAAILGST  213 (369)
Q Consensus       148 ~g~~~~~~~Vi~s~~~-h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~L~~~i~~~-~~~v~~~~~~~  213 (369)
                      .+ ......++..... |-.........+..            +..+|.      -+.+.++..+.+. ..+|++--...
T Consensus       125 ~~-~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~iAavi~EPi~g  197 (404)
T d1z7da1         125 KI-PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVCAFIVEPIQG  197 (404)
T ss_dssp             CC-CTTCCEEEEETTC--------------------------CEEEECT------TCHHHHHHHHTSTTEEEEEECSSBS
T ss_pred             cc-cccccccccccccCCCCcccccccccccccccCCCCCCcccccccc------chHHHHHHHhcCCCEEEEEEEEEcC
Confidence            01 0111234444333 32222222221111            122221      2567787777654 45666655555


Q ss_pred             CcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCCCCC-CCeEEE
Q 017569          214 LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV  288 (369)
Q Consensus       214 ~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l~~p-~g~g~l  288 (369)
                      ..|.+-|    +++|.++|+++      |+++++|+++.|+..  ......+...-...|.++  ..|.+.+. ...|.+
T Consensus       198 ~~G~~~~~~~fl~~l~~lc~~~------g~llI~DEV~tGfgR--tG~~~~~e~~gv~PDivt--~gK~l~gG~~p~~~v  267 (404)
T d1z7da1         198 EAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVIL--LGKALSGGHYPISAV  267 (404)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEEE
T ss_pred             CCCCccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCCc--ccccccccccCCCCCEEE--EcccccCCCCCcccc
Confidence            5676655    99999999999      999999999976432  111111111111468887  45776554 456777


Q ss_pred             EEeC
Q 017569          289 VWRT  292 (369)
Q Consensus       289 ~~~~  292 (369)
                      +.++
T Consensus       268 ~~~~  271 (404)
T d1z7da1         268 LAND  271 (404)
T ss_dssp             EECH
T ss_pred             cchH
Confidence            7764

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=1.8e-05  Score=74.45  Aligned_cols=263  Identities=11%  Similarity=-0.069  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      +.+|.+.+++.+.++...+..... ...+-..++.+++.+....+.     ....++++|+||+..|++.++.....+  
T Consensus        59 h~~p~i~~Ai~~q~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~-----~~v~f~~sGseA~e~A~k~ar~~~~~~--  130 (429)
T d1s0aa_          59 YNHPQLNAAMKSQIDAMSHVMFGG-ITHAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYWQAK--  130 (429)
T ss_dssp             BSCHHHHHHHHHHHHHCSCCCCSS-EECHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCcHHHHHHHHHHHHhcCCcccCC-ccchHHHHHHHHHHhhhccCc-----ceeeeccccccchhhhhhhhhheeecc--
Confidence            346888888888776533211111 111222234455666665543     347899999999999999988653321  


Q ss_pred             hcCCCCCCCeEEecCC-CcchHHHHHhhhcc-------------eeEEEeccC--C---ccccCHHHHHHHHhh---cCc
Q 017569          147 EQGKPYDKPNIVTGAN-VQVCWEKFARYFEV-------------ELKEVKLEE--G---YYVMNPVKAVELVDE---NTI  204 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~~-~h~s~~~~~~~~G~-------------~v~~v~~~~--~---~~~~d~~~L~~~i~~---~~~  204 (369)
                        |  ..+.+|+.-.. .|-....++...|-             .....|...  .   ...-+++++++.+.+   +..
T Consensus       131 --g--~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia  206 (429)
T d1s0aa_         131 --G--EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA  206 (429)
T ss_dssp             --T--CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred             --c--ccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccc
Confidence              1  11335655444 45444333333221             122333211  1   112345666665543   334


Q ss_pred             EEEEeeC-CCCcccCC----CHHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcCccCC
Q 017569          205 CVAAILG-STLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG  279 (369)
Q Consensus       205 ~v~~~~~-~~~tG~~~----~l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~hK~l  279 (369)
                      +|++.-. .+..|...    -+++|.++|+++      |+.+++|+++.|+..  ......+...-...|.+++  .|-+
T Consensus       207 avivEPi~~~~gg~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGfGR--tG~~~~~~~~~v~PDi~~~--gK~l  276 (429)
T d1s0aa_         207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCL--GKAL  276 (429)
T ss_dssp             EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEE--CGGG
T ss_pred             eeeecceeccCCCccCCCHHHHHHHHHHHHHc------Ccceehhhccccccc--cccccccccceeccccccc--cccc
Confidence            4444322 23323322    299999999999      999999999887533  1111111111124677774  3554


Q ss_pred             -CCCCCeEEEEEeCCCCcccccccc-cCccCCCCCCccccCCcchhHHHHHHHHHHHhcHhhHHHHHhhHHHHHHHHHHH
Q 017569          280 -LVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVIPSFCCVDHKKLSSFFVI  357 (369)
Q Consensus       280 -~~p~g~g~l~~~~~~~~~~~~~~~-~~y~~~~~~~~~l~~tr~~~~~l~~~~~l~~lg~~G~~~~~~~~~a~~l~~~L~  357 (369)
                       ++-...|.++.+++ .. +.+... ..-...   ..|..+  +....++..++|..+..+++.+ +..++.++|++.|+
T Consensus       277 ~gG~~p~~av~~~~~-i~-~~~~~~~~~~~~~---~~T~~g--np~~~aaa~a~L~~i~~~~~~~-~~~~~g~~l~~~L~  348 (429)
T d1s0aa_         277 TGGTMTLSATLTTRE-VA-ETISNGEAGCFMH---GPTFMG--NPLACAAANASLAILESGDWQQ-QVADIEVQLREQLA  348 (429)
T ss_dssp             GTSSSCCEEEEECHH-HH-HHHHTSTTSSCSC---CCTTTT--CHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHG
T ss_pred             ccccccccchhhHHH-HH-hccCCCCCcceee---cCCCCC--Ccccchhhhccccccccccccc-hhhHHHHHHHHHHH
Confidence             33355677777542 11 111110 000000   011111  1223455556677776655543 77778889999997


Q ss_pred             hc
Q 017569          358 HS  359 (369)
Q Consensus       358 ~~  359 (369)
                      ++
T Consensus       349 ~l  350 (429)
T d1s0aa_         349 PA  350 (429)
T ss_dssp             GG
T ss_pred             Hh
Confidence            65

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.47  E-value=7.6e-06  Score=77.18  Aligned_cols=198  Identities=14%  Similarity=-0.107  Sum_probs=108.0

Q ss_pred             CChHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK  146 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~~~~~  146 (369)
                      ..+|.+.+++.+.+++..+....+..  +...++.+.|.++..-..     ....++++|+||+..|++.+|...     
T Consensus        57 h~~p~v~~ai~~q~~~~~~~~~~~~~--~~~~~la~~L~~~~~~~~-----~~v~f~~sGseA~e~Alk~Ar~~t-----  124 (431)
T d1zoda1          57 HCHPEIVSVIGEYAGKLDHLFSEMLS--RPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLVT-----  124 (431)
T ss_dssp             BTCHHHHHHHHHHHHHCCCCCTTCCC--HHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHhhcccccccccc--HHHHHHHHHHHHhCCccc-----ceeeecccccchHHHHHHHHHHhc-----
Confidence            44688899998888764322222222  222356666777763222     248899999999999999988642     


Q ss_pred             hcCCCCCCCeEEecC-CCcchHHHHHhhhc-----------ceeEEEeccCC--------ccccC---HHHHHHHHhh--
Q 017569          147 EQGKPYDKPNIVTGA-NVQVCWEKFARYFE-----------VELKEVKLEEG--------YYVMN---PVKAVELVDE--  201 (369)
Q Consensus       147 ~~g~~~~~~~Vi~s~-~~h~s~~~~~~~~G-----------~~v~~v~~~~~--------~~~~d---~~~L~~~i~~--  201 (369)
                        |    +.+|+.-. ..|-....++...+           .....++....        ....+   ++.+...+..  
T Consensus       125 --~----r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (431)
T d1zoda1         125 --G----KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS  198 (431)
T ss_dssp             --T----CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC
T ss_pred             --C----CcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhc
Confidence              1    34555543 34433333332211           11333432210        01112   2333333321  


Q ss_pred             --cCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccccccCCCccccccCCCCcEEEEcC
Q 017569          202 --NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG  275 (369)
Q Consensus       202 --~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~Dsi~~~~  275 (369)
                        +..+|++.--....|.+.+    +++|.++|+++      |+++|+|+++.|+..  ..........-...|.++  .
T Consensus       199 ~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~------gillI~DEV~tG~gR--tG~~~~~~~~gv~PDi~~--~  268 (431)
T d1zoda1         199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILT--L  268 (431)
T ss_dssp             CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEE--E
T ss_pred             cccccceeeccccccCCccCCCHHHHHHHHHHHHhc------CceEEeccccccccc--cccccccccCCCCcchhc--c
Confidence              2345555444344455533    99999999999      999999999887432  111111111112468777  4


Q ss_pred             ccCCCCCCCeEEEEEeC
Q 017569          276 HKYGLVYAGVGWVVWRT  292 (369)
Q Consensus       276 hK~l~~p~g~g~l~~~~  292 (369)
                      .|.+.+....+.++.++
T Consensus       269 gK~l~gG~p~~av~~~~  285 (431)
T d1zoda1         269 SKTLGAGLPLAAIVTSA  285 (431)
T ss_dssp             CHHHHTTSSCEEEEECH
T ss_pred             ccccccccccceeeeee
Confidence            56655555556666643

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.12  E-value=0.00019  Score=67.97  Aligned_cols=260  Identities=11%  Similarity=-0.035  Sum_probs=128.8

Q ss_pred             CChHHHHHHHHHHhccCC----CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCCCCCeEEeCCchHHHHHHHHHHHHHHH
Q 017569           67 WMEPECDKLVMASINKNY----VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ  142 (369)
Q Consensus        67 ~~~~~v~~~~~~~~~~n~----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~Ggt~a~~~al~~~~~~~~  142 (369)
                      +.+|.+.+++.+.++...    ......+. ..+.+++.+.+.++.+.+.     ....++++|+||+..|++.++....
T Consensus        69 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~-~~~a~~lae~l~~~~~~~~-----~~v~f~~sGseAve~Aik~Ar~~~~  142 (461)
T d1ohwa_          69 YSHPALVKLVQQPQNVSTFINRPALGILPP-ENFVEKLRESLLSVAPKGM-----SQLITMACGSCSNENAFKTIFMWYR  142 (461)
T ss_dssp             BTCHHHHHHHHCGGGHHHHHCCCCTTTSCB-TTHHHHHHHTGGGGCCTTC-----CEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhhhhhcccccccccch-HHHHHHHHHHHHhhhccCc-----ceeeeecchhhhhHHHHHHHHHHhh
Confidence            345778888876655321    11111111 1122333333444433332     3488999999999999999876543


Q ss_pred             HHHHhc---------------CCCCCCCeEEec-CCCcchHHHHHhhhcc-----------eeEEEeccCC---------
Q 017569          143 QKRKEQ---------------GKPYDKPNIVTG-ANVQVCWEKFARYFEV-----------ELKEVKLEEG---------  186 (369)
Q Consensus       143 ~~~~~~---------------g~~~~~~~Vi~s-~~~h~s~~~~~~~~G~-----------~v~~v~~~~~---------  186 (369)
                      .+....               .....+..|+.- ...|-....++...|-           .....+....         
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (461)
T d1ohwa_         143 SKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK  222 (461)
T ss_dssp             HHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHH
T ss_pred             hcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccccccccccccccc
Confidence            221100               001123356654 4445444434333321           1111221110         


Q ss_pred             ----ccccCHHHHHHHHh------hcCcEEEEeeCCCCcccCCC----HHHHHHHHHHhhhccCCCceEEeecccccccc
Q 017569          187 ----YYVMNPVKAVELVD------ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIA  252 (369)
Q Consensus       187 ----~~~~d~~~L~~~i~------~~~~~v~~~~~~~~tG~~~~----l~~I~~l~~~~~~~~~~~~~l~vD~a~~~~~~  252 (369)
                          ....+.+++++.+.      ++..+|++.-.....|.+.+    +++|.++|+++      |+++|+|+++.|+..
T Consensus       223 ~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~------gillI~DEV~tG~gR  296 (461)
T d1ohwa_         223 ENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH------GCAFLVDEVQTGGGS  296 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT------TCEEEEECTTTCSST
T ss_pred             ccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh------Ccceecccccccccc
Confidence                01123455555553      23445666555555565532    99999999999      999999999876532


Q ss_pred             cccCCCcccc-ccCC-CCcEEEEcCccCCCCCCCeEEEEEeCCCCcccccccccCccCCCCCCccccCCcchhHHHHHHH
Q 017569          253 PFLYPDLEWD-FRLP-LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY  330 (369)
Q Consensus       253 ~~~~~~~~~~-~~~~-~~Dsi~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~tr~~~~~l~~~~  330 (369)
                        ...-..+. +.+. ..|.++++  |-++    .|.+..+.  .+    .....+.-    ..|..++.  ...++..+
T Consensus       297 --tG~~~~~e~~gi~~~PDiv~~g--K~l~----~g~~~~~~--~~----~~~~~~~~----~~T~~g~p--~~~aaa~a  356 (461)
T d1ohwa_         297 --TGKFWAHEHWGLDDPADVMTFS--KKMM----TGGFFHKE--EF----RPNAPYRI----FNTWLGDP--SKNLLLAE  356 (461)
T ss_dssp             --TSSSSGGGGGCCSSCCSEEEEC--GGGS----SEEEEECG--GG----SCSSTTSS----CCSCSSCH--HHHHHHHH
T ss_pred             --ccccccccccccccCchhhhhh--hccc----cccccccc--cc----cccccccc----cccccccc--ccchhhcc
Confidence              11101111 1121 36888743  6553    24444421  11    11111110    11111222  23455557


Q ss_pred             HHHHhcHhhHHHHHhhHHHHHHHHHHHhc
Q 017569          331 QFIRLGFEVIPSFCCVDHKKLSSFFVIHS  359 (369)
Q Consensus       331 ~l~~lg~~G~~~~~~~~~a~~l~~~L~~~  359 (369)
                      +|+.+..+++.+ +..++.++|.++|+++
T Consensus       357 ~l~~i~~~~l~~-~~~~~g~~l~~~l~~l  384 (461)
T d1ohwa_         357 VINIIKREDLLS-NAAHAGKVLLTGLLDL  384 (461)
T ss_dssp             HHHHHHHTTHHH-HHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHH-HHHHHHHHHHHHHHHH
Confidence            777777666543 5666777777777653