Citrus Sinensis ID: 017570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKKKKHT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHccccHHccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHcHHEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccEEcccccEEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccEEHccccHHHHEEEccccc
Coil and Loop (DISEMBL)
matppipiayqqelpavpdwlnkgdsawQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMafgdqllpfwgkgapalgqkylvgrarvpesthevdgktvttepfYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGafslwgggflyqwgvidysggyVIHVSSGIAGLTaaywvgprlksdkerfppnNVLLMLAGAGLlwmgwsgfnggapYAAHIASSIAILNTNVAAATSLLVWTCLDviffgkpsvIGAVQGMMTGLVcitpgaglvQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKKKKHT
Flexible Loop (DISEMBL)
matppipiayqqelPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARvpesthevdgktvtTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASfvkkkkkht
Low Complexity Region (SEG)
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVllmlagagllwmgwSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKKKKHT
Disordered region (IsUnstruct)
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASF********
Disordered Region (DISOPRED)
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASF*KK*****
Disordered Region (DISEMBL)
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKKKKHT
Disordered Region (DISPRO)
********************LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFVKKKKKHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q84KJ7	486	Ammonium transporter 2 me	yes	no	0.940	0.713	0.772	1e-157
Q8S230	501	Ammonium transporter 2 me	no	no	0.978	0.720	0.717	1e-153
Q9M6N7	475	Ammonium transporter 2 OS	yes	no	0.934	0.726	0.740	1e-149
Q8S233	497	Ammonium transporter 2 me	no	no	0.970	0.720	0.712	1e-149
Q84KJ6	498	Ammonium transporter 3 me	no	no	0.964	0.714	0.706	1e-147
Q69T29	480	Ammonium transporter 3 me	no	no	0.975	0.75	0.706	1e-143
Q851M9	479	Ammonium transporter 3 me	no	no	0.932	0.718	0.692	1e-140
O26759	412	Putative ammonium transpo	yes	no	0.845	0.757	0.371	6e-52
O66515	423	Ammonia channel OS=Aquife	yes	no	0.813	0.709	0.364	5e-49
O26757	407	Putative ammonium transpo	no	no	0.799	0.724	0.339	6e-45

>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1

 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/351 (77%), Positives = 306/351 (87%), Gaps = 4/351 (1%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY   LPAVPDWLNKGD+AWQ+TASTLVGIQSMPGL+++Y SIVKKKWAVNSAFM LYA+
Sbjct: 6   AYSASLPAVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAY 65

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
           A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA +P + H   G    TEPFY
Sbjct: 66  ASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFY 122

Query: 129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
             ATLV FQF FAAIT++LLAGSVLGRMNI+AWMAF PLWL+ SYTVGAFSLWGGGFLY+
Sbjct: 123 PEATLVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYR 182

Query: 189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGF 248
           WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+LLM+AG GLLWMGW+GF
Sbjct: 183 WGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGF 242

Query: 249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
           NGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPG
Sbjct: 243 NGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPG 302

Query: 309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           AGLVQ+WAA+VMGI +GS+PW TMMILHKK +LL +V  T L +F+   +A
Sbjct: 303 AGLVQTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDT-LAVFHTHAVA 352

Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2

 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/365 (71%), Positives = 309/365 (84%), Gaps = 4/365 (1%)

Query: 1   MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNS 60
           MA+PP P  Y  +LPAVP WLNKGD+AWQ+ A+T VGIQSMPGL++IY SIVKKKWAVNS
Sbjct: 5   MASPPQPGPYMPDLPAVPAWLNKGDTAWQLVAATFVGIQSMPGLVVIYGSIVKKKWAVNS 64

Query: 61  AFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG 119
           AFM LYA+A+ LI WVLV +RMAFGD+LLPFW K  PAL Q +LV RA  P + H   DG
Sbjct: 65  AFMALYAYASTLIVWVLVGFRMAFGDRLLPFWAKAGPALTQDFLVQRAVFPATAHYGSDG 124

Query: 120 --KTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
             +T  TEPFYA A LV F+F FAAIT++LLAGS+LGRMNI+AWMAF PLWL+FSYTVGA
Sbjct: 125 TLETPRTEPFYAEAALVLFEFEFAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVGA 184

Query: 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAG 237
           FSLWGGGFLYQWGVIDYSGGYVIH+SSG+AG TAAYWVGPRLKSD+ERF PNN+LLM+AG
Sbjct: 185 FSLWGGGFLYQWGVIDYSGGYVIHLSSGVAGFTAAYWVGPRLKSDRERFSPNNILLMIAG 244

Query: 238 AGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQG 297
            GLLW+GW+GFNGGAPYA ++ +++A+LNTNV+AATSLL WTCLDVIFFGKPSVIGAVQG
Sbjct: 245 GGLLWLGWAGFNGGAPYAPNVTATVAVLNTNVSAATSLLTWTCLDVIFFGKPSVIGAVQG 304

Query: 298 MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLT 357
           MMTGLVCITPGAGLV +W+A++MG+ +GS+PW TMMILHKK + L +V  T L +F+   
Sbjct: 305 MMTGLVCITPGAGLVHTWSAMLMGMFAGSVPWFTMMILHKKSTFLMKVDDT-LAVFHTHA 363

Query: 358 IASFV 362
           +A  +
Sbjct: 364 VAGIL 368

Involved in ammonium transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/354 (74%), Positives = 310/354 (87%), Gaps = 9/354 (2%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY   LP VP+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 4   AYDPSLPEVPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 63

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
           AAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++
Sbjct: 64  AAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYF 115

Query: 129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
            MATLVYFQFTFAAIT IL+AGSVLGRMNI+AWMAFVPLWL+FSYTVGA+S+WGGGFLYQ
Sbjct: 116 PMATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQ 175

Query: 189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGF 248
           WGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNVLLMLAGAGLLWMGWSGF
Sbjct: 176 WGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGF 235

Query: 249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
           NGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPG
Sbjct: 236 NGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPG 295

Query: 309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFV 362
           AGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+V  T L +FY   +A  +
Sbjct: 296 AGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDT-LAVFYTHAVAGLL 348

High affinity ammonium transporter that may play an important role in moving ammonium between the apoplast and symplast of cells throughout the plant. Does not transport methylammonium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/362 (71%), Positives = 303/362 (83%), Gaps = 4/362 (1%)

Query: 1   MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNS 60
           MA+P  P  Y    PAVP+WLN GD+ WQ+ A+T VG+QSMPGL+++Y SIVKKKWAVNS
Sbjct: 1   MASPTRPGPYMPRPPAVPEWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNS 60

Query: 61  AFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG 119
           AFM LYA+A+ LI WVLV +RMAFGD+LLPFWGK   AL + +LV RA VP + H   DG
Sbjct: 61  AFMALYAYASTLIVWVLVGFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDG 120

Query: 120 --KTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
             ++  TEPFY  A++V FQF  AAIT++LLAGS+LGRMNI+AWMAF PLWL+FSYTV A
Sbjct: 121 ALESPRTEPFYPEASMVLFQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCA 180

Query: 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAG 237
           FSLWGGGFLYQWGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+LLM+AG
Sbjct: 181 FSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAG 240

Query: 238 AGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQG 297
            GLLW+GW+GFNGGAPYA +I +SIA+LNTNV+AA SLL WTCLDVIFFGKPSVIGAVQG
Sbjct: 241 GGLLWLGWAGFNGGAPYAPNITASIAVLNTNVSAAASLLTWTCLDVIFFGKPSVIGAVQG 300

Query: 298 MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLT 357
           MMTGLVCITPGAGLV +WAAI+MGI  GS+PW +MMILHK+ +LLQ+V  T L +F+   
Sbjct: 301 MMTGLVCITPGAGLVHTWAAILMGICGGSLPWFSMMILHKRSALLQKVDDT-LAVFHTHA 359

Query: 358 IA 359
           +A
Sbjct: 360 VA 361

Involved in ammonium transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1

 Score =  520 bits (1340), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/365 (70%), Positives = 302/365 (82%), Gaps = 9/365 (2%)

Query: 6   IPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVL 65
           + +AYQ    AVP+WLNKGD+AWQM ++TLVG+QS+PGL+I+Y SIVKKKWAVNSAFM L
Sbjct: 8   MSVAYQPSGMAVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMAL 67

Query: 66  YAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG------ 119
           YAFAAV +CWV   Y M+FG +LLPFWGK  PALGQ +L+ +A +P++T    G      
Sbjct: 68  YAFAAVWLCWVTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADA 127

Query: 120 --KTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
             +T    P Y MAT+VYFQ  FAAIT+ILLAGS+LGRMNI+AWM FVPLWL FSYTVGA
Sbjct: 128 VVETPWVNPLYPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGA 187

Query: 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAG 237
           FSLWGGGFL+ WGV+DYSGGYVIH+SSG+AG TAAYWVGPR   D+ERFPPNNVLLML G
Sbjct: 188 FSLWGGGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNVLLMLTG 247

Query: 238 AGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQG 297
           AG+LWMGW+GFNGG PY+A+I SS+A+LNTN+ AATSLLVWTCLDVIFF KPSVIGAVQG
Sbjct: 248 AGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQG 307

Query: 298 MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLT 357
           M+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM++HK+  LLQQV  T L +F+   
Sbjct: 308 MITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDT-LGVFHTHA 366

Query: 358 IASFV 362
           +A F+
Sbjct: 367 VAGFL 371

Involved in ammonium transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/365 (70%), Positives = 308/365 (84%), Gaps = 5/365 (1%)

Query: 1   MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNS 60
           MA   IP+AYQ   P+ PDWLNKGD+AWQMT++TLVG+QSMPGL+I+Y SIVKKKWA+NS
Sbjct: 1   MAAGAIPMAYQTT-PSSPDWLNKGDNAWQMTSATLVGLQSMPGLVILYGSIVKKKWAINS 59

Query: 61  AFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPEST---HEV 117
           AFM LYAFAAV ICWV+  Y M+FGD+LLPFWGK  PALGQ +LV ++ +  +    H  
Sbjct: 60  AFMALYAFAAVWICWVVWAYNMSFGDRLLPFWGKARPALGQSFLVAQSELTATAIRYHNG 119

Query: 118 DGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
             +    +P Y +AT+VYFQ  FA+IT+I+LAGS+LGRMNI+AWMAFVPLW+ FSYTV A
Sbjct: 120 SAEAPMLKPLYPVATMVYFQCMFASITIIILAGSLLGRMNIKAWMAFVPLWITFSYTVCA 179

Query: 178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAG 237
           FSLWGGGFL+QWGVIDYSGGYVIH+SSGIAGLTAAYWVGPR  SD+ERFPPNN+LL+LAG
Sbjct: 180 FSLWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRSASDRERFPPNNILLVLAG 239

Query: 238 AGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQG 297
           AGLLW+GW+GFNGG PY+A+I SS+A+LNT++ A+TSLLVWT LDV FFGKPSVIGAVQG
Sbjct: 240 AGLLWLGWTGFNGGDPYSANIDSSMAVLNTHICASTSLLVWTILDVFFFGKPSVIGAVQG 299

Query: 298 MMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLT 357
           M+TGLVCITPGAGLVQ WAAIVMGILSGSIPW TMM+LHKK S +Q++  T L +F+   
Sbjct: 300 MITGLVCITPGAGLVQGWAAIVMGILSGSIPWYTMMVLHKKWSFMQRIDDT-LGVFHTHA 358

Query: 358 IASFV 362
           +A F+
Sbjct: 359 VAGFL 363

Involved in ammonium transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1

 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/348 (69%), Positives = 285/348 (81%), Gaps = 4/348 (1%)

Query: 6   IPIAYQQELPA-VPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMV 64
           +P+AYQ    A V DWLNKGD+AWQ+ A+T+VG+QS+PGL+++Y  +VKKKWAVNSAFM 
Sbjct: 8   VPLAYQGNTSASVADWLNKGDNAWQLVAATVVGLQSVPGLVVLYGGVVKKKWAVNSAFMA 67

Query: 65  LYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH-EVDG--KT 121
           LYAFAAV ICWV   Y M+FG++LLP WGK  PAL Q  LVGRA +P + H   DG  +T
Sbjct: 68  LYAFAAVWICWVTWAYNMSFGEKLLPIWGKARPALDQGLLVGRAALPATVHYRADGSVET 127

Query: 122 VTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW 181
              EP Y MAT+VYFQ  FAAIT+IL+AGS+LGRM+  AWM FVPLWL FSYTVGAFSLW
Sbjct: 128 AAVEPLYPMATVVYFQCVFAAITLILVAGSLLGRMSFLAWMIFVPLWLTFSYTVGAFSLW 187

Query: 182 GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLL 241
           GGGFL+ WGVIDY GGYVIHVS+GIAG TAAYWVGPR + D+ERFPPNN+L  L GAGLL
Sbjct: 188 GGGFLFHWGVIDYCGGYVIHVSAGIAGFTAAYWVGPRAQKDRERFPPNNILFTLTGAGLL 247

Query: 242 WMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTG 301
           WMGW+GFNGG PYAA+  +S+A+LNTN+  A SL+VWTCLDVIFF KPSV+GAVQGM+TG
Sbjct: 248 WMGWAGFNGGGPYAANSVASMAVLNTNICTAMSLIVWTCLDVIFFKKPSVVGAVQGMITG 307

Query: 302 LVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTF 349
           LVCITP AG+VQ WAA+VMG+L+GSIPW TMMILHK+  +LQ+V  T 
Sbjct: 308 LVCITPAAGVVQGWAALVMGVLAGSIPWYTMMILHKRSKILQRVDDTL 355

Involved in ammonium transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1

 Score =  205 bits (521), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 182/328 (55%), Gaps = 16/328 (4%)

Query: 12  QELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAV 71
            E+  +   LN GD+AW + ++ LV + ++PG+ + Y  + KK+  +N+ F+ L AFA  
Sbjct: 1   MEMTLMDAVLNSGDTAWMLVSTALVMLMTVPGVALFYGGLTKKENVLNTMFLSLIAFAVT 60

Query: 72  LICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMA 131
            I WVL  Y+ AFG  ++ F G     L     V  A     T            F  +A
Sbjct: 61  SIIWVLYGYQFAFGADIMGFIGSPVNLLMNGVGVNTAAALAPT---------IPDFLYIA 111

Query: 132 TLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGV 191
               FQ TFAAITV L++G+V+ RM   AW+AF+ LW+   Y   A  +WGGGFL Q G 
Sbjct: 112 ----FQLTFAAITVALISGAVVERMKFSAWLAFIVLWVSLVYVPVAHWVWGGGFLAQLGA 167

Query: 192 IDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGG 251
           +D++GG V+H++SG+A L   Y +G R      R  P+N+   + GA LLW GW GFN G
Sbjct: 168 LDFAGGTVVHINSGVAALALVYLLGKR---KDTRLLPHNLGYSVIGASLLWFGWFGFNAG 224

Query: 252 APYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGL 311
           +   A   ++ A L TN AAA  ++ W  +D +  GKP+V+G + G + GLV ITP AG 
Sbjct: 225 SALTAGGLAASAFLVTNTAAAAGMVSWVIMDYLKVGKPTVLGGISGAVAGLVAITPAAGF 284

Query: 312 VQSWAAIVMGILSGSIPWVTMMILHKKC 339
           V   AA+++G+++  I ++ +  L  + 
Sbjct: 285 VTVPAALIIGLVTSVISYLAVSYLKPRL 312

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 178/318 (55%), Gaps = 18/318 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
           L+ G++AW + AS LV   ++PGL + Y  + K K  +N+  M   AFA V + W+ V Y
Sbjct: 25  LDTGNTAWMLVASALVVFMTVPGLALFYGGLDKSKSILNTIAMSFSAFAVVTLTWIFVGY 84

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A+GD +  F G   P    +Y++G+              + ++  Y     + FQ TF
Sbjct: 85  SVAYGDDIFGFIGN--P---FQYVLGKGI----------SGINSDTGYPALLDLMFQLTF 129

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A IT  L++GS +GRM   AW+ F  LW +F Y   A  +WGGGFL   G +D++GG V+
Sbjct: 130 ATITTALISGSFVGRMKFSAWILFAILWSVFVYPPVAHWVWGGGFLANDGALDFAGGTVV 189

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++GIAGL  A  +G R         PNNV L+  GAG+LW GW GFN G+   A+ ++
Sbjct: 190 HINAGIAGLVGALILGRR---KDTSLIPNNVPLVALGAGILWFGWFGFNAGSALGANESA 246

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           + A++NT VA +T+ L W   + +  GKP+V+G   G++ GLV ITP AG V    +I +
Sbjct: 247 AWAMINTTVATSTAALAWMFTEWLHVGKPTVVGISSGIVAGLVAITPAAGFVNLIGSIFI 306

Query: 321 GILSGSIPWVTMMILHKK 338
           G ++    +  + ++  K
Sbjct: 307 GAIASVCAYFMVALVKPK 324

Involved in the uptake of ammonia.

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|O26757|Y661_METTH Putative ammonium transporter MTH_661 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_661 PE=3 SV=1

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 17/312 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
           LN GD+AW + ++ LV + ++PG+ + Y+ + K++  +N+ F+   +   V + W L  Y
Sbjct: 3   LNSGDTAWMLISTALVILMTVPGVAMFYSGLTKRENVLNTIFLSFVSLGIVSLLWFLFGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            + FG  +               ++G  +V  S   + G      P         FQ TF
Sbjct: 63  GLIFGGDV-------------SGIIGSHQVGISLINL-GSASKYAPTIPEGLFAIFQMTF 108

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           AAITV L++G+V+ R+   +W+ F+PLW    Y   A  +WGGGFL   GV D++GG V+
Sbjct: 109 AAITVALISGAVVERIKFSSWILFIPLWFALVYVPVAHWVWGGGFLQNLGVHDFAGGIVV 168

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H++SGIA L  A   GPR     ++  P+++   + G GLLW GW GFN G+  +A   +
Sbjct: 169 HITSGIAALALALVTGPRY---DQKLMPHHLGYSVIGTGLLWFGWFGFNAGSALSAGSLA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           + A++ TN +AA  ++ W  +D +  GKP+++GA+ G + GL  ITP AG V   A+IV 
Sbjct: 226 ANAMIVTNTSAAAGMIGWILMDRLKTGKPTLLGALSGAVAGLASITPAAGFVDIGASIVT 285

Query: 321 GILSGSIPWVTM 332
           G+++  I ++ +
Sbjct: 286 GLVAAVICYLAV 297

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
373501951	490	ammonium transporter [Malus hupehensis]	0.948	0.714	0.810	1e-165
356521048	486	PREDICTED: ammonium transporter 2-like [	0.953	0.724	0.839	1e-165
356496235	488	PREDICTED: ammonium transporter 2-like [	0.953	0.721	0.839	1e-165
356568134	486	PREDICTED: ammonium transporter 2-like [	0.953	0.724	0.839	1e-164
373501953	490	ammonium transporter [Malus hupehensis]	0.948	0.714	0.807	1e-163
224091028	485	ammonium transporter [Populus trichocarp	0.948	0.721	0.849	1e-163
357506079	487	Ammonium transporter 3 member [Medicago	0.962	0.728	0.826	1e-163
22900886	494	amt2-like protein [Medicago truncatula]	0.962	0.718	0.826	1e-163
15799272	486	putative ammonium transporter AMT2 [Lotu	0.953	0.724	0.823	1e-162
255579286	477	ammonium transporter, putative [Ricinus	0.948	0.733	0.826	1e-162

>gi|373501951|gb|AEY75248.1| ammonium transporter [Malus hupehensis] gi|384237235|gb|AFH74972.1| ammonium transporter AMT2;1 [Malus hupehensis] gi|384237237|gb|AFH74973.1| ammonium transporter AMT2;1 [Malus hupehensis]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/354 (81%), Positives = 321/354 (90%), Gaps = 4/354 (1%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY +  PAVP WLNKGD+AWQ+TA+T VG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 7   AYSEITPAVPPWLNKGDNAWQLTAATFVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 66

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG---KTVTTE 125
           AAVLICWVLV YRMAFGDQLLPFW KGAP+LGQK+L+ RA+VPESTH  DG   +T T E
Sbjct: 67  AAVLICWVLVGYRMAFGDQLLPFWAKGAPSLGQKFLINRAKVPESTHFHDGGLIETPTVE 126

Query: 126 PFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGF 185
           PFY M +LVYFQFTFAAIT++LLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGGGF
Sbjct: 127 PFYPMVSLVYFQFTFAAITLVLLAGSVLGRMNIKAWMAFVPLWLLFSYTVGAFSLWGGGF 186

Query: 186 LYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGW 245
           LY WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLML GAG+LWMGW
Sbjct: 187 LYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLCGAGMLWMGW 246

Query: 246 SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCI 305
           SGFNGGAPYAA++ + IA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQGMMTGLVCI
Sbjct: 247 SGFNGGAPYAANVIAPIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCI 306

Query: 306 TPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           TPGAGLVQSWAAI+MGILSGSIPWV+MM+LHKK +LLQ+V  T L +F+   +A
Sbjct: 307 TPGAGLVQSWAAILMGILSGSIPWVSMMVLHKKSTLLQKVDDT-LGVFHTHAVA 359

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521048|ref|XP_003529170.1| PREDICTED: ammonium transporter 2-like [Glycine max]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/356 (83%), Positives = 327/356 (91%), Gaps = 4/356 (1%)

Query: 7   PIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLY 66
           P+AYQ+ LPA P+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LY
Sbjct: 4   PLAYQEHLPAAPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALY 63

Query: 67  AFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTT-- 124
           AFAAVLICWVLVCYRMAFG++L PFWGKGAPALGQK+L  RA V E+ H  D  TV +  
Sbjct: 64  AFAAVLICWVLVCYRMAFGEELFPFWGKGAPALGQKFLTKRAIVIETIHHFDNGTVESPP 123

Query: 125 -EPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
            EPFY MA+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGG
Sbjct: 124 EEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGG 183

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWM 243
           GFLYQWGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLMLAGAGLLWM
Sbjct: 184 GFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWM 243

Query: 244 GWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLV 303
           GWSGFNGGAPYAA+IASSIA+LNTN+ AATSLLVWT LDVIFFGKPSVIGAVQGMMTGLV
Sbjct: 244 GWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLV 303

Query: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK +LLQ+V  T L +F+   +A
Sbjct: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSTLLQKVDDT-LGVFHTHAVA 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496235|ref|XP_003516974.1| PREDICTED: ammonium transporter 2-like [Glycine max]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/356 (83%), Positives = 327/356 (91%), Gaps = 4/356 (1%)

Query: 7   PIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLY 66
           P AYQ+ LPA P WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YAS+VKKKWAVNSAFM LY
Sbjct: 4   PTAYQEHLPASPHWLNKGDNAWQLTAATLVGLQSMPGLVILYASMVKKKWAVNSAFMALY 63

Query: 67  AFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTV---T 123
           AFAAVLICWVLVC+RMAFGD+LLPFWGKGAPALGQK+L  RA+VPESTH  +  TV   T
Sbjct: 64  AFAAVLICWVLVCHRMAFGDKLLPFWGKGAPALGQKFLTHRAKVPESTHYYNNGTVESAT 123

Query: 124 TEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
           +EP +A A+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGG
Sbjct: 124 SEPLFATASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGG 183

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWM 243
           GFLY WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLMLAGAGLLWM
Sbjct: 184 GFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWM 243

Query: 244 GWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLV 303
           GWSGFNGGAPYAA+I SSIA+LNTN+ AATSLLVWT LDVIFFGKPSVIGAVQGMMTGLV
Sbjct: 244 GWSGFNGGAPYAANIDSSIAVLNTNICAATSLLVWTSLDVIFFGKPSVIGAVQGMMTGLV 303

Query: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK SLLQ+V  T L +F+   +A
Sbjct: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSSLLQKVDDT-LGVFHTHAVA 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568134|ref|XP_003552268.1| PREDICTED: ammonium transporter 2-like [Glycine max]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/356 (83%), Positives = 327/356 (91%), Gaps = 4/356 (1%)

Query: 7   PIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLY 66
           P+AYQ+ LPA P WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LY
Sbjct: 4   PLAYQEHLPAAPSWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALY 63

Query: 67  AFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTT-- 124
           AFAAVLICWVLVCYRMAFG++LLPFWGKGAPALGQK+L  RA V E+ H     TV +  
Sbjct: 64  AFAAVLICWVLVCYRMAFGEELLPFWGKGAPALGQKFLTKRAVVNETIHHFHNGTVESPP 123

Query: 125 -EPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
            EPFY MA+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGG
Sbjct: 124 EEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGG 183

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWM 243
           GFLYQWGVIDYSGGYVIH+SSGIAGLTAAYWVGPRLKSD+ERFPPNNVLLMLAGAGLLWM
Sbjct: 184 GFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWM 243

Query: 244 GWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLV 303
           GWSGFNGGAPYAA+IASSIA+LNTN+ AATSLLVWT LDVIFFGKPSVIGAVQGMMTGLV
Sbjct: 244 GWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLV 303

Query: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           CITPGAGLVQSWAAI+MGILSGSIPWVTMMILHKK +LLQ+V  T L +F+   +A
Sbjct: 304 CITPGAGLVQSWAAILMGILSGSIPWVTMMILHKKSTLLQKVDDT-LGVFHTHAVA 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373501953|gb|AEY75249.1| ammonium transporter [Malus hupehensis]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/354 (80%), Positives = 319/354 (90%), Gaps = 4/354 (1%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY    PAVP WLNKGD+AWQ+ A+T VG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 7   AYSVIAPAVPPWLNKGDNAWQLIAATFVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 66

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG---KTVTTE 125
           AAVLICWVLV YRMAFGDQLLPFW KGAP+LGQK+L+ RA+VPESTH  DG   +T T E
Sbjct: 67  AAVLICWVLVGYRMAFGDQLLPFWAKGAPSLGQKFLINRAKVPESTHFHDGGLIETPTVE 126

Query: 126 PFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGF 185
           PFY M +LVYFQFTFAAIT++LLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGGGF
Sbjct: 127 PFYPMVSLVYFQFTFAAITLVLLAGSVLGRMNIKAWMAFVPLWLLFSYTVGAFSLWGGGF 186

Query: 186 LYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGW 245
           LY WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLML GAG+LWMGW
Sbjct: 187 LYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLCGAGMLWMGW 246

Query: 246 SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCI 305
           SGFNGGAPYAA++ + IA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQGMMTGLVCI
Sbjct: 247 SGFNGGAPYAANVIAPIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCI 306

Query: 306 TPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           TPGAGLVQSWAAI+MGILSGSIPWV+MM+LHKK +LLQ+V  T L +F+   +A
Sbjct: 307 TPGAGLVQSWAAILMGILSGSIPWVSMMVLHKKSTLLQKVDDT-LGVFHTHAVA 359

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091028|ref|XP_002309151.1| ammonium transporter [Populus trichocarpa] gi|222855127|gb|EEE92674.1| ammonium transporter [Populus trichocarpa]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 299/352 (84%), Positives = 326/352 (92%), Gaps = 2/352 (0%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY+Q  PAVP WLNKGD+AWQMTASTLV +QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 6   AYEQVSPAVPSWLNKGDNAWQMTASTLVALQSMPGLVILYASIVKKKWAVNSAFMALYAF 65

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEV-DGKTVTTEPF 127
           AAVLICWVL+ YRMAFGD+LLPFWGKGAPALGQKYL+ RARVPESTH + DG   T EP+
Sbjct: 66  AAVLICWVLLGYRMAFGDELLPFWGKGAPALGQKYLLTRARVPESTHTLEDGTRETVEPW 125

Query: 128 YAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLY 187
           Y MA+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGGGFLY
Sbjct: 126 YPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLY 185

Query: 188 QWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSG 247
            WGVIDYSGGYVIH+SSGIAGLTAAYWVGPRLKSD+ERFPPNNVLLMLAGAGLLWMGWSG
Sbjct: 186 HWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSG 245

Query: 248 FNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITP 307
           FNGGAPYAA+I +SIA+LNTNV AATSLLVWT LDV++FGKPSVIGAVQGMMTGLVCITP
Sbjct: 246 FNGGAPYAANIDASIAVLNTNVCAATSLLVWTSLDVVYFGKPSVIGAVQGMMTGLVCITP 305

Query: 308 GAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           GAGLVQSWAAIVMGILSGSIPWV+MMILHKK +LLQ+V  T L +F+   +A
Sbjct: 306 GAGLVQSWAAIVMGILSGSIPWVSMMILHKKSALLQKVDDT-LGVFHTHAVA 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506079|ref|XP_003623328.1| Ammonium transporter 3 member [Medicago truncatula] gi|355498343|gb|AES79546.1| Ammonium transporter 3 member [Medicago truncatula]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/363 (82%), Positives = 328/363 (90%), Gaps = 8/363 (2%)

Query: 1   MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNS 60
           MA  P   AYQ  LP  P+WLNKGD+AWQMTA+TLVG+QSMPGL+I+YASIVKKKWAVNS
Sbjct: 1   MAASP---AYQAHLPTSPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNS 57

Query: 61  AFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTH----E 116
           AFM LYAFAAVLICWVLV YRMAFGD+LLPFWGKGAPALGQK+LV RA+VP STH     
Sbjct: 58  AFMALYAFAAVLICWVLVAYRMAFGDELLPFWGKGAPALGQKFLVARAKVPASTHYYKNG 117

Query: 117 VDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVG 176
           VD +T   EPF+ MA+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVG
Sbjct: 118 VDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVG 177

Query: 177 AFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLA 236
           AFSLWGGGFLY WGVIDYSGGYVIH+SSGIAG TAAYWVGPR+KSD+ERFPPNNVLLMLA
Sbjct: 178 AFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLA 237

Query: 237 GAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQ 296
           GAGLLWMGWSGFNGGAPYAA++ASSIA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQ
Sbjct: 238 GAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQ 297

Query: 297 GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFL 356
           GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWV+MMILHKK SLLQ+V  T L +F+  
Sbjct: 298 GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDT-LGVFHTH 356

Query: 357 TIA 359
            +A
Sbjct: 357 AVA 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22900886|gb|AAN06953.1| amt2-like protein [Medicago truncatula]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/363 (82%), Positives = 328/363 (90%), Gaps = 8/363 (2%)

Query: 1   MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNS 60
           MA  P   AYQ  LP  P+WLNKGD+AWQMTA+TLVG+QSMPGL+I+YASIVKKKWAVNS
Sbjct: 1   MAASP---AYQAHLPTSPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNS 57

Query: 61  AFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHE---- 116
           AFM LYAFAAVLICWVLV YRMAFGD+LLPFWGKGAPALGQK+LV RA+VP STH     
Sbjct: 58  AFMALYAFAAVLICWVLVAYRMAFGDELLPFWGKGAPALGQKFLVARAKVPASTHYYKNG 117

Query: 117 VDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVG 176
           VD +T   EPF+ MA+LVYFQFTFAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVG
Sbjct: 118 VDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVG 177

Query: 177 AFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLA 236
           AFSLWGGGFLY WGVIDYSGGYVIH+SSGIAG TAAYWVGPR+KSD+ERFPPNNVLLMLA
Sbjct: 178 AFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLA 237

Query: 237 GAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQ 296
           GAGLLWMGWSGFNGGAPYAA++ASSIA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQ
Sbjct: 238 GAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQ 297

Query: 297 GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFL 356
           GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWV+MMILHKK SLLQ+V  T L +F+  
Sbjct: 298 GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDT-LGVFHTH 356

Query: 357 TIA 359
            +A
Sbjct: 357 AVA 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15799272|gb|AAL08212.1| putative ammonium transporter AMT2 [Lotus japonicus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 293/356 (82%), Positives = 324/356 (91%), Gaps = 4/356 (1%)

Query: 7   PIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLY 66
           P AYQ+ LPA P+WLNKGD+AWQMTA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LY
Sbjct: 4   PTAYQENLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALY 63

Query: 67  AFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG---KTVT 123
           AFAAVL+CWVL+CYRMAFGD+L PFWGKGAPALGQK+L+ +A VPESTH  +    +T T
Sbjct: 64  AFAAVLLCWVLLCYRMAFGDKLFPFWGKGAPALGQKFLINQASVPESTHYFNNGSIETQT 123

Query: 124 TEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
             PFY MATLVYFQF FAAIT+ILLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFS+WGG
Sbjct: 124 QRPFYPMATLVYFQFNFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSIWGG 183

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWM 243
           GFLY WGVID+SGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLMLAGAGLLWM
Sbjct: 184 GFLYHWGVIDFSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWM 243

Query: 244 GWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLV 303
           GWSGFNGGAPYAA+I +SIA+LNTN+ AATSLLVWT LDV FFGKPSVIGAVQGMMTGLV
Sbjct: 244 GWSGFNGGAPYAANIDASIAVLNTNICAATSLLVWTSLDVAFFGKPSVIGAVQGMMTGLV 303

Query: 304 CITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           CITPGAGLVQSWAAIVMGILSGSIPWV+MMILHKK SLLQ+V  T L +F+   +A
Sbjct: 304 CITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDT-LGVFHTHAVA 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579286|ref|XP_002530488.1| ammonium transporter, putative [Ricinus communis] gi|223529945|gb|EEF31872.1| ammonium transporter, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/352 (82%), Positives = 323/352 (91%), Gaps = 2/352 (0%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY    PAVP WLNKGD+AWQMTAS LV  QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 4   AYSNVTPAVPPWLNKGDNAWQMTASVLVATQSMPGLVILYASIVKKKWAVNSAFMALYAF 63

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVD-GKTVTTEPF 127
           AAVLICWVL+C+RMAFGD+LLPFWGKGAPALGQ YL GRAR+PESTH+ + G++VT  P+
Sbjct: 64  AAVLICWVLLCFRMAFGDELLPFWGKGAPALGQNYLTGRARIPESTHKNEQGQSVTVSPY 123

Query: 128 YAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLY 187
           + MATLVYFQFTFAAIT+ILLAGSVL RMNI+AWMAFVPLWL+FSYTVGAFSLWGGGFLY
Sbjct: 124 FPMATLVYFQFTFAAITLILLAGSVLARMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLY 183

Query: 188 QWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSG 247
           QWGVIDYSGGYVIH+SSGIAGLTAAYWVGPRLK D+ERFPPNNVLLMLAGAGLLWMGWSG
Sbjct: 184 QWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKGDRERFPPNNVLLMLAGAGLLWMGWSG 243

Query: 248 FNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITP 307
           FNGGAPYAAHI +SIA+LNTN++AATSLLVWT LDVIFFGKPSVIGAVQGMMTGL C+TP
Sbjct: 244 FNGGAPYAAHIDASIAMLNTNISAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLACVTP 303

Query: 308 GAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIA 359
           GAGLVQSWAAIVMGIL+GSIPWV+MM+LHKK +LLQ++  T L +F+   +A
Sbjct: 304 GAGLVQSWAAIVMGILAGSIPWVSMMVLHKKSTLLQKIDDT-LGVFHTHAVA 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
UNIPROTKB|Q84KJ7	486	AMT2-1 "Ammonium transporter 2	0.948	0.720	0.731	3e-140
TAIR|locus:2042917	475	AMT2 "ammonium transporter 2"	0.934	0.726	0.700	2.4e-138
TIGR_CMR|CHY_0073	438	CHY_0073 "ammonium transporter	0.593	0.5	0.346	2.9e-44
TIGR_CMR|CPS_3995	445	CPS_3995 "ammonium transporter	0.558	0.462	0.368	2.9e-44
UNIPROTKB|P69681	428	amtB "AmtB" [Escherichia coli	0.542	0.467	0.376	2e-43
TIGR_CMR|DET_1125	408	DET_1125 "ammonium transporter	0.821	0.742	0.329	6.1e-39
TIGR_CMR|SPO_2093	431	SPO_2093 "ammonium transporter	0.772	0.661	0.320	1.3e-36
TIGR_CMR|GSU_0940	489	GSU_0940 "ammonium transporter	0.867	0.654	0.313	3.1e-35
POMBASE|SPCPB1C11.01	497	amt1 "ammonium transporter Amt	0.785	0.583	0.315	4.6e-34
UNIPROTKB|G4MMA1	485	MGG_16392 "Uncharacterized pro	0.826	0.628	0.306	3.7e-32

UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
 Identities = 259/354 (73%), Positives = 294/354 (83%)

Query:     9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
             AY   LPAVPDWLNKGD+AWQ+TASTLVGIQSMPGL+++Y SIVKKKWAVNSAFM LYA+
Sbjct:     6 AYSASLPAVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAY 65

Query:    69 AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
             A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA +P + H   G    TEPFY
Sbjct:    66 ASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFY 122

Query:   129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
               ATLV FQF FAAIT++LLAGSVLGRMNI+AWMAF PLWL+ SYTVGAFSLWGGGFLY+
Sbjct:   123 PEATLVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYR 182

Query:   189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGF 248
             WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GF
Sbjct:   183 WGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGF 242

Query:   249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
             NGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPG
Sbjct:   243 NGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPG 302

Query:   309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFV 362
             AGLVQ+WAA+VMGI +GS+PW TMMILHKK +LL +V  T L +F+   +A  +
Sbjct:   303 AGLVQTWAAVVMGIFAGSVPWFTMMILHKKSALLMKVDDT-LAVFHTHAVAGLL 355

GO:0005886 "plasma membrane" evidence=TAS

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 248/354 (70%), Positives = 296/354 (83%)

Query:     9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
             AY   LP VP+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct:     4 AYDPSLPEVPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 63

Query:    69 AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
             AAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++
Sbjct:    64 AAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYF 115

Query:   129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
              MATLVYFQFTFAAIT IL+AGSVLGRMNI+AWMAFVPLWL+FSYTVGA+S+WGGGFLYQ
Sbjct:   116 PMATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQ 175

Query:   189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGF 248
             WGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNV              SGF
Sbjct:   176 WGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGF 235

Query:   249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
             NGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPG
Sbjct:   236 NGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPG 295

Query:   309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASFV 362
             AGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+V  T L +FY   +A  +
Sbjct:   296 AGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDT-LAVFYTHAVAGLL 348

GO:0005737 "cytoplasm" evidence=ISM

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS

GO:0015695 "organic cation transport" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IDA

GO:0015696 "ammonium transport" evidence=RCA;TAS

GO:0009624 "response to nematode" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 374 (136.7 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 77/222 (34%), Positives = 123/222 (55%)

Query:   117 VDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVG 176
             V G TV+  P Y     V FQ  FA IT  +++GSV+ RM+  AW+ F+ LW    Y   
Sbjct:   107 VMGLTVSNLPGYVF---VVFQLMFAIITAAIISGSVVERMSFAAWILFIALWTTLVYDPL 163

Query:   177 AFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXX 236
             A  +WGGG L++   +D++GG V+H+SSGI+GL AA  +G R + +     P+N+     
Sbjct:   164 AHMVWGGGMLFKLPTLDFAGGTVVHISSGISGLVAALILGKRKEGENAPLMPHNLPLTIL 223

Query:   237 XXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQ 296
                       GFN G+  AA+  +++A +NTN +A  + L W   + +   K +V+G   
Sbjct:   224 GAGLLWFGWFGFNAGSALAANNLAALAFINTNTSAVMAALAWALAEWLHRRKVTVLGIAT 283

Query:   297 GMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK 338
             G + GLV +TP AG V   +++ +G++ G + ++ + IL  K
Sbjct:   284 GAVAGLVAVTPAAGFVTPTSSVFIGLVGGVLVYIAVGILKAK 325

GO:0008519 "ammonium transmembrane transporter activity" evidence=ISS

GO:0015696 "ammonium transport" evidence=ISS

TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 365 (133.5 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 76/206 (36%), Positives = 117/206 (56%)

Query:   136 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYS 195
             FQ TFA IT +L+ G    RM   A + F  +WL+  Y      +WGGG+L Q G+ D++
Sbjct:   137 FQMTFAIITPVLIIGGFAERMKFSAVLLFSGIWLLAVYAPITHWVWGGGWLAQMGIYDFA 196

Query:   196 GGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYA 255
             GG V+H+++G A L AA  +GPR    K    P+N+               GFNGG+  A
Sbjct:   197 GGIVVHITAGTAALVAALVIGPRRGFPKTPMLPHNLTMTVTGAGMLWVGWFGFNGGSALA 256

Query:   256 AHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSW 315
             A+  +S+A+L T+++AA   L W  ++   FGK SV+GAV GM+ GL  ITP +G V   
Sbjct:   257 ANGDASMAMLVTHISAAAGTLTWAAIEWKKFGKASVLGAVTGMVAGLGTITPASGFVGPG 316

Query:   316 AAIVMGILSGSIPWVTMMILHKKCSL 341
              A+++GI +G + + + + + +K  +
Sbjct:   317 GALIIGISAGFVCFYSTVYIKQKLKI 342

GO:0008519 "ammonium transmembrane transporter activity" evidence=ISS

GO:0015696 "ammonium transport" evidence=ISS

UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)]

 Score = 358 (131.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 76/202 (37%), Positives = 116/202 (57%)

Query:   134 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVID 193
             V FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D
Sbjct:   123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALD 182

Query:   194 YSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAP 253
             ++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+ 
Sbjct:   183 FAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSA 242

Query:   254 YAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQ 313
               A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G + 
Sbjct:   243 GTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIG 302

Query:   314 SWAAIVMGILSGSIP-W-VTMM 333
                A+++G+++G    W VTM+
Sbjct:   303 VGGALIIGVVAGLAGLWGVTML 324

GO:0072488 "ammonium transmembrane transport" evidence=IEA

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0051739 "ammonia transmembrane transporter activity" evidence=IDA

GO:0015670 "carbon dioxide transport" evidence=IDA

GO:0015696 "ammonium transport" evidence=IEA;IMP;IDA

GO:0015292 "uniporter activity" evidence=IMP

TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 105/319 (32%), Positives = 168/319 (52%)

Query:    21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
             ++ GD+ W + ++ LV + + PG+ + Y  +V++K  V++  M   A A   + WVL+ Y
Sbjct:     1 MDSGDTTWLLVSTALVMLMT-PGVALFYGGMVRRKNLVSTLMMSFGAMALGGVLWVLIGY 59

Query:    81 RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
              + FG+ +    G G   LG   L G  + P  T+       TT P  A    + FQ  F
Sbjct:    60 SLGFGNDINGLVG-GLNFLG---LNGVGQDPSDTY------ATTVPHLAF---MMFQGMF 106

Query:   141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYV 199
             A I++ L+ G+V+ R+   A + F  LWL   Y+  A  +WG GG+L+  GV+D++GG V
Sbjct:   107 AIISLALITGAVVERIRFSALLLFGALWLCLIYSPIAHWVWGDGGWLFNLGVLDFAGGTV 166

Query:   200 IHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIA 259
             +H+++G++ +     +G R    KE+  PNN+               GFNGG+   A   
Sbjct:   167 VHINAGVSAMALVLALGARRGFLKEQMEPNNLPMVMLGAALLWFGWFGFNGGSALTAGGL 226

Query:   260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIV 319
             +S A + TN AAA++ L W  L      +PS++GAV G + GLV ITP AG V   AAI 
Sbjct:   227 ASNAFVTTNTAAASAALCWIFLSWRH-RRPSLLGAVTGAVAGLVAITPAAGFVTPLAAIA 285

Query:   320 MGILSGSIPWVTMMILHKK 338
             +G ++  + +  M+   K+
Sbjct:   286 IGAVAALVCYGAMIFKMKR 304

GO:0008519 "ammonium transmembrane transporter activity" evidence=ISS

GO:0015696 "ammonium transport" evidence=ISS

TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 100/312 (32%), Positives = 160/312 (51%)

Query:    21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVL-ICWVLVC 79
             +N  D+AW + A+ LV   ++PGL + Y  +V+ +  V S FM  +A A ++ I W++  
Sbjct:    39 MNGADTAWIIVATALVLFMTLPGLALFYGGLVRAR-NVLSVFMHCFAIACLMSILWLVAG 97

Query:    80 YRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFT 139
             Y +AFG     FWG     L +  L+G      +   + G T+    F+A      FQ T
Sbjct:    98 YSIAFGGGTSGFWG----GLDKVMLIG-----VTADSLSG-TLPEILFFA------FQMT 141

Query:   140 FAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVI------D 193
             FA IT  L+ G+ + R+     + F  LW++  Y      +WGGG +   G+       D
Sbjct:   142 FAIITPALIVGAYVERVGFGFVLTFSGLWMLLCYAPVVHWIWGGGMMSDGGIFGETGVRD 201

Query:   194 YSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAP 253
             ++GG V+H ++G+A L  A  +GPR        PP+N                GFNGG+ 
Sbjct:   202 FAGGIVVHETAGLAALIIAVMLGPRRNRTT---PPHNPGFVMIGAAMLWVGWFGFNGGSQ 258

Query:   254 YAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQ 313
              AA   +++A+  T+++AAT+ L W   + I +GK S++G V G + GL  ITP +G V 
Sbjct:   259 LAADGGAAMALTVTHISAATASLSWALWERIKYGKASLVGLVTGTIAGLASITPASGFVG 318

Query:   314 SWAAIVMGILSG 325
               AA+++G ++G
Sbjct:   319 PAAALLIGAVAG 330

GO:0008519 "ammonium transmembrane transporter activity" evidence=ISS

GO:0015696 "ammonium transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 106/338 (31%), Positives = 170/338 (50%)

Query:    13 ELPAVPD-WLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAV 71
             E P V +  LN G++AW +  + LV +  +PGL + Y  +V+ K  +++      A   V
Sbjct:    61 EAPKVAEPVLNTGNTAWMLVCAALV-LLMLPGLALFYGGMVRSKNVLSTLMHSFVAMGIV 119

Query:    72 LICWVLVCYRMAFGDQL--LPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYA 129
              + W ++ Y +AFG  +  +   G  + AL    +  +   P  T     + VT+EP  A
Sbjct:   120 GVQWAVIGYSLAFGPDMGGMGLVGDFSRALLNGMISFKDGAPVYTL---WQNVTSEP-NA 175

Query:   130 MATLVY--FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFL 186
             +   V+  FQ  FA ITV L++G++  R+   A+  FV LW    Y   A  +W   G+L
Sbjct:   176 IPEYVFAMFQGMFAMITVALISGAMAERVKFSAYCVFVLLWTTLVYDPLAHWVWMVDGWL 235

Query:   187 YQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXS 246
             ++ G +D++GG V+H+SSGI+ L    ++G R     ER  P+N+               
Sbjct:   236 FKKGALDFAGGTVVHLSSGISALAFLVFLGKRHGFPHERMAPHNLSMTMLGVGLLWFGWF 295

Query:   247 GFNGGAPY-------AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMM 299
             GFN G+         AA   + +A   T +A A   L W   + I  G+PS +G   G++
Sbjct:   296 GFNAGSAVVGVNNVDAAGGLAGLAFATTTIAPAAGGLAWMIAEWIHAGRPSALGFGSGVV 355

Query:   300 TGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337
              GLV ITP AG VQ  AAI++G+ +G I ++ +++  K
Sbjct:   356 AGLVGITPAAGFVQPGAAIIIGLGAGVICYLGVLMKAK 393

GO:0008519 "ammonium transmembrane transporter activity" evidence=ISS

GO:0015696 "ammonium transport" evidence=ISS

POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 97/307 (31%), Positives = 155/307 (50%)

Query:    22 NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYR 81
             N GD AW +T++ LV I  +PG+   Y+ + +++ A++  F+ + + A V   W    Y 
Sbjct:    29 NNGDVAWILTSTALVFIM-IPGVGFFYSGLARRRSAISMLFLSMMSVAIVAFQWFFWGYS 87

Query:    82 MAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFA 141
             + F  +  P+ G  A   G +  +GR   P S     G +   +  + +     FQ  FA
Sbjct:    88 LTFSHEGGPYIGSLAN-FGLRQTLGR---PSS-----GASSVPDILFCV-----FQGMFA 133

Query:   142 AITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVI 200
             AIT  L  G+   R  +   M F+ LW    Y   AF  W   G+L + G  D++GG  +
Sbjct:   134 AITPALAIGAAADRGRMFPCMVFMFLWTSIVYDPIAFWTWNPNGWLNKLGSYDFAGGSPV 193

Query:   201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIAS 260
             H+SSG+A L  +  +G R      ++ P+NV               GFNGG+  AA++  
Sbjct:   194 HISSGMAALAYSIVIGKRCDHGTTKYRPHNVPHVVLGTVFLWFGWFGFNGGSSAAANMRG 253

Query:   261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
              +A++ T++AA+   +VW  +D       SV+G  +G + GLV ITPG+G V  WAA+V+
Sbjct:   254 VMAVVVTHLAASVGGIVWCVIDFAKNRHWSVVGFCEGAVAGLVAITPGSGFVPPWAAVVI 313

Query:   321 GILSGSI 327
             G L G++
Sbjct:   314 GAL-GAV 319

GO:0001403 "invasive growth in response to glucose limitation" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0015200 "methylammonium transmembrane transporter activity" evidence=IMP

GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IMP

GO:0031670 "cellular response to nutrient" evidence=IMP

GO:0072488 "ammonium transmembrane transport" evidence=IMP

GO:0072489 "methylammonium transmembrane transport" evidence=IMP

UNIPROTKB|G4MMA1 MGG_16392 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 102/333 (30%), Positives = 158/333 (47%)

Query:     7 PIAYQQELPAVPDWLNK--------GDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAV 58
             P+ Y   LP   D L +        GD AW MT+S LV +  +PG+   Y+ + ++K A+
Sbjct:     5 PVEYNGTLPTGGDSLTEDLNIYYSSGDFAWIMTSSALV-LLMIPGVGFFYSGLARRKSAL 63

Query:    59 NSAFMVLYAFAAVLICWVLVCYRMAFGDQ-LLPFWGKGAPALGQKYLVGRARVPESTHEV 117
                ++ L +       W    Y +AF       F G  A  +G K ++G+  V       
Sbjct:    64 ALIWLSLMSIGVASFQWFFWGYSLAFSHTGESGFIGDLAN-IGLKDVLGQPSV------- 115

Query:   118 DGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA 177
              G +   +  + +     +Q  FAAIT  L  G+   R  +   M FV +W    Y   A
Sbjct:   116 -GSSKLPDLLFCL-----YQGMFAAITPALAIGAAADRGRMLPAMVFVFVWATIVYDPIA 169

Query:   178 FSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKER---FPPNNVXX 233
             +  W   G+ ++ G +D++GG  +H+SSG A L  +  +G R   D      F P+NV  
Sbjct:   170 YWTWNPNGWSFKLGGLDFAGGTPVHISSGAAALAYSLMLGKRAGYDSNAGMPFRPHNVTH 229

Query:   234 XXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIG 293
                          GFNGG+  AA++ + +A+L TN++AA   L W  LD     K S IG
Sbjct:   230 VVLGTVMLYVGWFGFNGGSALAANLRAVMALLVTNISAAVGGLTWCFLDYRLEKKWSTIG 289

Query:   294 AVQGMMTGLVCITPGAGLVQSWAAIVMGILSGS 326
                G++ GLV ITP AG V +W+A++ G++ G+
Sbjct:   290 FCSGVIAGLVAITPAAGYVPAWSAVIFGVVGGA 322

GO:0044271 "cellular nitrogen compound biosynthetic process" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M6N7	AMT2_ARATH	No assigned EC number	0.7401	0.9349	0.7263	yes	no
Q84KJ7	AMT21_ORYSJ	No assigned EC number	0.7720	0.9403	0.7139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
TIGR00836	403	TIGR00836, amt, ammonium transporter	6e-87
COG0004	409	COG0004, AmtB, Ammonia permease [Inorganic ion tra	2e-77
PRK10666	428	PRK10666, PRK10666, ammonium transporter; Provisio	4e-52
pfam00909	399	pfam00909, Ammonium_transp, Ammonium Transporter F	4e-46
TIGR03644	404	TIGR03644, marine_trans_1, probable ammonium trans	2e-25

>gnl|CDD|233145 TIGR00836, amt, ammonium transporter

 Score =  267 bits (686), Expect = 6e-87
 Identities = 111/315 (35%), Positives = 167/315 (53%), Gaps = 16/315 (5%)

Query: 27  AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD 86
           AW + A+ LV     PG  ++YA +V+ K  +N     L  FA   + W L  Y +AFG+
Sbjct: 2   AWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 87  QLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVI 146
              P  G      G   L                 ++            FQ  FAAI   
Sbjct: 61  DN-PINGFIGT--GGFGLKNFL---------YPGKISLAGTLPDLLFFLFQMMFAAIAAT 108

Query: 147 LLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSG 205
           +++G+V  RM   A++ F  LW    Y   A  +WG GG+LY+ GV+D++GG V+H+  G
Sbjct: 109 IISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGG 168

Query: 206 IAGLTAAYWVGPRLKSDKE--RFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIA 263
           +AGL AA  +GPR+          P+NV L++ G  +LW GW GFN G+  AA+  ++ A
Sbjct: 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYA 228

Query: 264 ILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGIL 323
            +NTN+AAA   L W  +D +  GKP+++GA  G++ GLV ITPG G+V  W AI++G++
Sbjct: 229 AVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLV 288

Query: 324 SGSIPWVTMMILHKK 338
           +G + ++ +  L KK
Sbjct: 289 AGVLCYLAVSKLKKK 303

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403

>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]

 Score =  244 bits (624), Expect = 2e-77
 Identities = 113/319 (35%), Positives = 173/319 (54%), Gaps = 16/319 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
           ++ GD+AW + ++ LV + + PGL + Y  +V+KK  +N+      AFA V + W+ V Y
Sbjct: 1   MDSGDTAWMLLSAALVLLMT-PGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGY 59

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +AFG     F G                     + +    V             FQ  F
Sbjct: 60  SLAFGPDGNGFIGNLDQFFL--------------NGLGFAAVAGGAGIPELVFFAFQMMF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYV 199
           AAIT  L++G+V  RM   A++ F  LW    Y   A  +WG GG+L   G +D++GG V
Sbjct: 106 AAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALDFAGGTV 165

Query: 200 IHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259
           +H+++G A L AA  +G R+       PP+N+ L++ GA LLW GW GFN G+  AA+  
Sbjct: 166 VHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV 225

Query: 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIV 319
           +++A +NTN+AAA   L W  ++ +  GKPS++GA  G + GLV ITP AG V  W A++
Sbjct: 226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALI 285

Query: 320 MGILSGSIPWVTMMILHKK 338
           +G+++G I +  + +L KK
Sbjct: 286 IGLIAGVICYFAVKLLKKK 304

Length = 409

>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional

 Score =  178 bits (453), Expect = 4e-52
 Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 17/310 (5%)

Query: 16  AVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICW 75
           A P   +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I W
Sbjct: 22  AAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILW 81

Query: 76  VLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVY 135
           V+  Y +AFG+    F+G          L            V G        Y     V 
Sbjct: 82  VVYGYSLAFGEG-NAFFG----NFNWLMLKNI-----ELTAVMGS------IYQYIH-VA 124

Query: 136 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYS 195
           FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++
Sbjct: 125 FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGALDFA 184

Query: 196 GGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYA 255
           GG V+H+++ +AGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+  A
Sbjct: 185 GGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGA 244

Query: 256 AHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSW 315
           A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G V   
Sbjct: 245 ANEIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVG 304

Query: 316 AAIVMGILSG 325
            A+++G+++G
Sbjct: 305 GALIIGVVAG 314

Length = 428

>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family

 Score =  162 bits (411), Expect = 4e-46
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 29/306 (9%)

Query: 30  MTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD--Q 87
           +  +  + I   PG  ++ + +V+ K  +N  +      A  ++ +    Y +AFG    
Sbjct: 3   ILLAAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWGFGYSLAFGKRYG 62

Query: 88  LLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVIL 147
              F G                       V    +             FQ  FAA  + +
Sbjct: 63  FSGFIG--------------------NLGVSAAGIQWGTLPDGL-FFLFQMMFAATAITI 101

Query: 148 LAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGV-IDYSGGYVIHVSSG 205
           ++G+V  R+   A++ F  L     Y   A  +WG GG+L + GV +D++G  V+H+  G
Sbjct: 102 VSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGG 161

Query: 206 IAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAA-HIASS 261
            AGL AA  +GPR+       E   P+N+   + G  LLW GW GFN G+   A   A +
Sbjct: 162 YAGLAAALVLGPRIGRFTDKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARA 221

Query: 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMG 321
           IA +NTN+AAA   L    +  +  GKP+++G   G + GLV IT   G+V  W A+++G
Sbjct: 222 IAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITAACGVVTPWGALIIG 281

Query: 322 ILSGSI 327
           +++G +
Sbjct: 282 LIAGVV 287

Length = 399

>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype

 Score =  105 bits (264), Expect = 2e-25
 Identities = 78/284 (27%), Positives = 126/284 (44%), Gaps = 21/284 (7%)

Query: 64  VLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVT 123
            L+A A   I ++LV Y + +    +   G     LG   L     V +     +G    
Sbjct: 44  ALFAIAC--IMYLLVGYNIMYPGGGIFLGG----ILGSFLLGADNPVGDLIAGFEG---- 93

Query: 124 TEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG 183
            +  Y+  +  +FQ  F A  + +++G+V  RM +  ++ F  +   F Y +     WGG
Sbjct: 94  -DADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWGG 152

Query: 184 GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL---KSDKE--RFPPNNVLLMLAGA 238
           G+L   G  D++G  ++H++   A L     +GPR      + E    P +N+ L   G 
Sbjct: 153 GWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGT 212

Query: 239 GLLWMGWSGFNGGAPYAAHIASSIA-----ILNTNVAAATSLLVWTCLDVIFFGKPSVIG 293
            +LWMGW GFNGG+  A    +          NTN AAA   +    L  + FGK  +  
Sbjct: 213 FILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTM 272

Query: 294 AVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK 337
            + G + GLV IT         AA ++G + G I   ++++L K
Sbjct: 273 VLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK 316

Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment. Length = 404

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
COG0004	409	AmtB Ammonia permease [Inorganic ion transport and	100.0
KOG0682	500	consensus Ammonia permease [Inorganic ion transpor	100.0
PRK10666	428	ammonium transporter; Provisional	100.0
TIGR00836	403	amt ammonium transporter. The mechanism of energy	100.0
TIGR03644	404	marine_trans_1 probable ammonium transporter, mari	100.0
PF00909	399	Ammonium_transp: Ammonium Transporter Family; Inte	100.0
KOG3796	442	consensus Ammonium transporter RHBG [Intracellular	100.0
PF00909	399	Ammonium_transp: Ammonium Transporter Family; Inte	84.0

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-94  Score=714.23  Aligned_cols=321  Identities=36%  Similarity=0.640  Sum_probs=298.0

Q ss_pred             ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccch
Q 017570           21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG  100 (369)
Q Consensus        21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~  100 (369)
                      +|++|++|+|+|+.|| ++|||||+|+|+|++|+||++|+++||++++++++++|+++||+++||++.++|+|+...++ 
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~-   78 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFF-   78 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHh-
Confidence            4689999999999999 99999999999999999999999999999999999999999999999987789999975431 


Q ss_pred             hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceee
Q 017570          101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL  180 (369)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWv  180 (369)
                         + +.. ...+.   .     ...++|++++++||++||++|++|++|+++||+|+.+|++|+++|.++||||++||+
T Consensus        79 ---~-~~~-~~~~~---~-----~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWv  145 (409)
T COG0004          79 ---L-NGL-GFAAV---A-----GGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWV  145 (409)
T ss_pred             ---c-cCc-ccccc---C-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeE
Confidence               1 110 00000   0     113589999999999999999999999999999999999999999999999999999


Q ss_pred             e-ccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchh
Q 017570          181 W-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (369)
Q Consensus       181 W-~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~  259 (369)
                      | ++|||.++|++|||||+|||+.+|+.||++++++|||+++.+++++|||++++++|+.+||+||||||+||+++.+.+
T Consensus       146 Wggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~  225 (409)
T COG0004         146 WGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV  225 (409)
T ss_pred             ecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhh
Confidence            9 677999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhc
Q 017570          260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC  339 (369)
Q Consensus       260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l  339 (369)
                      +..+++||++|+++++++|++++++++||+|+..++||++||||+|||+|++|+||+|++||+++|++|+++++.++|| 
T Consensus       226 a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~-  304 (409)
T COG0004         226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK-  304 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988876 


Q ss_pred             cccCccccccccchhccccee
Q 017570          340 SLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       340 ~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                         +|+|||+|++++|+++|+
T Consensus       305 ---l~~DD~ld~f~vHGvgGi  322 (409)
T COG0004         305 ---LGVDDALDVFGVHGVGGI  322 (409)
T ss_pred             ---cCCCCcccceeccchhhH
Confidence               799999999999998653

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-91  Score=700.43  Aligned_cols=337  Identities=32%  Similarity=0.518  Sum_probs=306.6

Q ss_pred             ccccCCCCccccccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC-
Q 017570            9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ-   87 (369)
Q Consensus         9 ~~~~~~~~~~~~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~-   87 (369)
                      +.+.+.+..|..+|..|+.|++.++.+| |.|||||+|||+|+||+||++|+|+||++|.+++.++||++||+||||++ 
T Consensus        16 ~~~~~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~   94 (500)
T KOG0682|consen   16 GGNVLTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSP   94 (500)
T ss_pred             ccccccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCC
Confidence            4444667788889999999999999999 99999999999999999999999999999999999999999999999998 


Q ss_pred             CCCcccCCcccchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Q 017570           88 LLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPL  167 (369)
Q Consensus        88 ~~~fiG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l  167 (369)
                      .|+|||+.++| +.+...++..              ....+|++.+++||++||+++++|++||++||+|+.+|++|+++
T Consensus        95 ~n~FiG~~~~F-~~~~~~g~~~--------------~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~  159 (500)
T KOG0682|consen   95 SNGFIGKLDFF-GLRNVSGDPS--------------SGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFF  159 (500)
T ss_pred             CCCceeecccc-ccccCCCCcC--------------CccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHH
Confidence            79999998752 2222211110              11228999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccceeee-ccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHhh
Q 017570          168 WLMFSYTVGAFSLW-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWM  243 (369)
Q Consensus       168 ~~~~vYp~~ahWvW-~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~---~~~~~~~n~~~~~lG~~lLw~  243 (369)
                      |.++||||++||+| ++||++++|++|||||++||++||.+||++++++|||++|+   .++++|||++++++|+++||+
T Consensus       160 ~~tlVY~~~a~W~W~~~Gw~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWf  239 (500)
T KOG0682|consen  160 LTTLVYCPVAHWVWSPNGWLYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWF  239 (500)
T ss_pred             HHHhcccccceeeecCCceeeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHH
Confidence            99999999999999 89999999999999999999999999999999999999973   457899999999999999999


Q ss_pred             hHhhhccCcccccchhhH-HHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHH
Q 017570          244 GWSGFNGGAPYAAHIASS-IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGI  322 (369)
Q Consensus       244 GW~gFN~gs~~~~~~~~~-~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~  322 (369)
                      ||++||+||.++++.+.. ++++||+||++.|++||++++++++||||+..+|||+|+|||||||+|++++||+|+++|+
T Consensus       240 GWl~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~  319 (500)
T KOG0682|consen  240 GWLGFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGA  319 (500)
T ss_pred             HHHccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhH
Confidence            999999999999888877 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHhhccccCccccccccchhcccc--------eeeeeccC
Q 017570          323 LSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTI--------ASFVKKKK  366 (369)
Q Consensus       323 iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg~~--------~~~~~~~~  366 (369)
                      ++|++|....+.     ++|+|||||+|++++|+++        |+|++++.
T Consensus       320 va~~~~~~~~kL-----~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v  366 (500)
T KOG0682|consen  320 VAGLVCNAANKL-----KERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDV  366 (500)
T ss_pred             HHHHHHHHHHHH-----HHHhcCCcHHHHHHHhccccchhhheeeeeccCcc
Confidence            999999876654     3458999999999999885        56887764

>PRK10666 ammonium transporter; Provisional

Probab=100.00  E-value=8.9e-91  Score=701.36  Aligned_cols=320  Identities=32%  Similarity=0.536  Sum_probs=295.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHhH-HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcc
Q 017570           19 DWLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAP   97 (369)
Q Consensus        19 ~~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~   97 (369)
                      +.+|+.|++|+++|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+.++
T Consensus        25 ~~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~  102 (428)
T PRK10666         25 AVADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNW  102 (428)
T ss_pred             cccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHH
Confidence            357889999999999999 9998 9999999999999999999999999999999999999999999975 689987654


Q ss_pred             cchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Q 017570           98 ALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGA  177 (369)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~a  177 (369)
                      ++.     +..  +.         ++....+|++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++
T Consensus       103 ~~~-----~~~--~~---------~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~va  166 (428)
T PRK10666        103 LML-----KNI--EL---------TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIA  166 (428)
T ss_pred             hhh-----cCC--Cc---------ccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhh
Confidence            321     110  00         00112367889999999999999999999999999999999999999999999999


Q ss_pred             eeeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccc
Q 017570          178 FSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH  257 (369)
Q Consensus       178 hWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~  257 (369)
                      ||+|++|||.++|++|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||+|||+||++..+
T Consensus       167 hWvW~~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~  246 (428)
T PRK10666        167 HMVWGGGLLASDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAAN  246 (428)
T ss_pred             hheeCchhHhhcchhhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhcccc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999888


Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHh
Q 017570          258 IASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHK  337 (369)
Q Consensus       258 ~~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~  337 (369)
                      +++.++++||++|+++|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++
T Consensus       247 ~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~  326 (428)
T PRK10666        247 EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKR  326 (428)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             hccccCccccccccchhccccee
Q 017570          338 KCSLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       338 ~l~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                      +    +|||||||++++|+++|+
T Consensus       327 ~----~~iDD~~~a~~vHgv~Gi  345 (428)
T PRK10666        327 W----LRVDDPCDVFGVHGVCGI  345 (428)
T ss_pred             c----CCCCCCcCccHhhhHhHH
Confidence            4    799999999999998764

>TIGR00836 amt ammonium transporter

Probab=100.00  E-value=5.4e-88  Score=678.46  Aligned_cols=316  Identities=35%  Similarity=0.652  Sum_probs=290.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccC--CCCCcccCCcccchhhh
Q 017570           26 SAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD--QLLPFWGKGAPALGQKY  103 (369)
Q Consensus        26 ~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~--~~~~fiG~~~~~~~~~~  103 (369)
                      ++|+++|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+  +.++|+|+.++++.   
T Consensus         1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~---   76 (403)
T TIGR00836         1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLK---   76 (403)
T ss_pred             ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhc---
Confidence            57999999999 9999999999999999999999999999999999999999999999998  55789998743321   


Q ss_pred             hccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeee-c
Q 017570          104 LVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-G  182 (369)
Q Consensus       104 ~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW-~  182 (369)
                         ..  +.+.   .   ....+.+|++.+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+| +
T Consensus        77 ---~~--~~~~---~---~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~  145 (403)
T TIGR00836        77 ---NF--LYPG---K---ISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGG  145 (403)
T ss_pred             ---cC--Cccc---c---cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecC
Confidence               10  0000   0   001234789999999999999999999999999999999999999999999999999999 5


Q ss_pred             cccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCC--CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhh
Q 017570          183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD--KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS  260 (369)
Q Consensus       183 ~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~--~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~  260 (369)
                      +|||+++|++|||||++||++||++||++++++|||++|+  +++++|||++++++|+++||+||+|||+||++..++++
T Consensus       146 ~GwL~~lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~  225 (403)
T TIGR00836       146 GGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTA  225 (403)
T ss_pred             CchhhccCcchhcCceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence            9999999999999999999999999999999999999998  67889999999999999999999999999999888899


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 017570          261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCS  340 (369)
Q Consensus       261 ~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~  340 (369)
                      .++++||++|+++|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|  
T Consensus       226 ~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~--  303 (403)
T TIGR00836       226 AYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK--  303 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999877664  


Q ss_pred             ccCccccccccchhccccee
Q 017570          341 LLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       341 ~~~~IDD~~~~~~~Hg~~~~  360 (369)
                        +|||||||++++|+++|+
T Consensus       304 --~~iDD~~~~~~vHg~~Gi  321 (403)
T TIGR00836       304 --LKIDDPLDAFAVHGVGGI  321 (403)
T ss_pred             --cCCCCCcccchhhhhhHH
Confidence              799999999999999764

The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.

>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype

Probab=100.00  E-value=2.5e-87  Score=673.03  Aligned_cols=323  Identities=26%  Similarity=0.423  Sum_probs=282.2

Q ss_pred             chhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhh
Q 017570           23 KGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQK  102 (369)
Q Consensus        23 ~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~  102 (369)
                      ..|+.|+++|++|| |+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. +++|+....    
T Consensus         2 ~~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~-~~~~g~~g~----   75 (404)
T TIGR03644         2 ALDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGG-IFLGGILGS----   75 (404)
T ss_pred             cccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCC-cccCCcchh----
Confidence            36999999999999 899999999999999999999999999999999999999999999999762 233321100    


Q ss_pred             hhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeec
Q 017570          103 YLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG  182 (369)
Q Consensus       103 ~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~  182 (369)
                      +.........+.  ...  ...+..+|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+
T Consensus        76 f~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~  151 (404)
T TIGR03644        76 FLLGADNPVGDL--IAG--FEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG  151 (404)
T ss_pred             hhhccccccccc--ccc--cccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC
Confidence            100000000000  000  0012246778889999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHHHHHhhhHhhhccCcccccc
Q 017570          183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDK-----ERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH  257 (369)
Q Consensus       183 ~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~-----~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~  257 (369)
                      +|||+++|++|||||++||++||++||++++++|||++|++     +++||||++++++|+++||+||+|||+||++..+
T Consensus       152 ~GwL~~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~  231 (404)
T TIGR03644       152 GGWLDDLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALS  231 (404)
T ss_pred             chHHhhcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcc
Confidence            89999999999999999999999999999999999998762     2578999999999999999999999999987765


Q ss_pred             h-----hhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHH
Q 017570          258 I-----ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTM  332 (369)
Q Consensus       258 ~-----~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~  332 (369)
                      .     .+.++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.
T Consensus       232 ~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~  311 (404)
T TIGR03644       232 DVADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSI  311 (404)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3     36899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhccccCccccccccchhccccee
Q 017570          333 MILHKKCSLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       333 ~~l~~~l~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                      ++++|     +|||||||++++|+++|+
T Consensus       312 ~~~~~-----~~iDD~~~~~~vHg~~Gi  334 (404)
T TIGR03644       312 VLLDK-----LKIDDPVGAISVHGVAGI  334 (404)
T ss_pred             HHHHh-----CCCCCCcCchHhhhHHHH
Confidence            87643     799999999999999875

Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.

>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix

Probab=100.00  E-value=1.8e-79  Score=618.02  Aligned_cols=308  Identities=32%  Similarity=0.546  Sum_probs=274.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC--CCCcccCCcccchhhhh
Q 017570           27 AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQ--LLPFWGKGAPALGQKYL  104 (369)
Q Consensus        27 ~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~--~~~fiG~~~~~~~~~~~  104 (369)
                      +|+++|+.+| ++||+||+++|+|.+|+||++|+++||++|+++++++||++||+++||++  .++++|+..+...    
T Consensus         1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~----   75 (399)
T PF00909_consen    1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAF----   75 (399)
T ss_dssp             HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHH----
T ss_pred             CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccc----
Confidence            6999999999 89999999999999999999999999999999999999999999999987  4566665221100    


Q ss_pred             ccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeee-cc
Q 017570          105 VGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-GG  183 (369)
Q Consensus       105 ~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW-~~  183 (369)
                       .                .+...+|+..+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+| ++
T Consensus        76 -~----------------~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~  138 (399)
T PF00909_consen   76 -G----------------FQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGEN  138 (399)
T ss_dssp             -H----------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHC
T ss_pred             -c----------------chhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecc
Confidence             0                01123677889999999999999999999999999999999999999999999999999 69


Q ss_pred             ccccccCce-ecCCcEEehhhhhHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchh
Q 017570          184 GFLYQWGVI-DYSGGYVIHVSSGIAGLTAAYWVGPRLKSD---KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (369)
Q Consensus       184 GwL~~lG~~-DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~---~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~  259 (369)
                      |||.++|.. ||+||++||++||++||++++++|||++|+   +++++|||++++++|+++||+||+|||+||++..+++
T Consensus       139 Gwl~~~g~~~DfaG~~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~  218 (399)
T PF00909_consen  139 GWLAQLGFLIDFAGSGVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGR  218 (399)
T ss_dssp             HHHHHCCHH--TT-TTTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHH
T ss_pred             hhhccCccCCCCccceeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCc
Confidence            999999999 999999999999999999999999999986   6788999999999999999999999999999998887


Q ss_pred             hHH-HHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhh
Q 017570          260 SSI-AILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK  338 (369)
Q Consensus       260 ~~~-a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~  338 (369)
                      +.. +++||++|+++|+++|++++++.+||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++++++++|
T Consensus       219 ~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~  298 (399)
T PF00909_consen  219 AWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR  298 (399)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce
Confidence            776 9999999999999999999999999999999999999999999999999999999999999999999999866664


Q ss_pred             ccccCccccccccchhccccee
Q 017570          339 CSLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       339 l~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                          +|||||||++++|+++|+
T Consensus       299 ----~~iDD~~~~~~vHg~~Gi  316 (399)
T PF00909_consen  299 ----LKIDDPVGAFAVHGVGGI  316 (399)
T ss_dssp             ----HTS-HTTGHHHHCHHHHH
T ss_pred             ----eEeccccceEeeeeccHH
Confidence                699999999999999774

It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....

>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=100.00  E-value=1.4e-41  Score=329.07  Aligned_cols=225  Identities=19%  Similarity=0.250  Sum_probs=200.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeeccccccccCceecCCcEEehhhhhHHHH
Q 017570          130 MATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGL  209 (369)
Q Consensus       130 ~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL  209 (369)
                      ...+.+..+.||+.++.|..||+.+|+++.|+++++++.+++ ....-|-+     +..++..|.+||+.||.+|+++||
T Consensus       115 i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~-~~~~e~v~-----~n~~~v~d~g~smtih~FgAYFGL  188 (442)
T KOG3796|consen  115 IGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTA-FGINEMVI-----SNIFNVNDHGGSMTIHAFGAYFGL  188 (442)
T ss_pred             EEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHH-HHHHHHHH-----HHhccccccCCceEEEehhhhhhh
Confidence            345678899999999999999999999999999999997664 33322211     356899999999999999999999


Q ss_pred             HHHHHHcCCCCC---CCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhHHHHHHHHHHHHHHHHHH-
Q 017570          210 TAAYWVGPRLKS---DKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIF-  285 (369)
Q Consensus       210 ~~a~~lGpR~g~---~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-  285 (369)
                      +++++++||..+   +++....|++.++++|+++||+.||+||+..+.. ++.+.|+++||++|.|++.+|++.++.+. 
T Consensus       189 avA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~rAi~NTy~slAa~tvTtf~~Sslv~  267 (442)
T KOG3796|consen  189 AVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARHRAIFNTYLSLAASTVTTFAVSSLVH  267 (442)
T ss_pred             hHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            999999988755   3455667999999999999999999999875443 56779999999999999999999999875 


Q ss_pred             -cCCCcHHHhhhhhhcccccccccCCC-CChHHHHHHHHHHhHHHHHHHHHHHhhccccCccccccccchhcccceee
Q 017570          286 -FGKPSVIGAVQGMMTGLVCITPGAGL-VQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSFTFLKLFYFLTIASF  361 (369)
Q Consensus       286 -~~k~~~~~~~nG~laGlVaIta~a~~-v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD~~~~~~~Hg~~~~~  361 (369)
                       +||.|+++++|..|||.|||+.+|+. .+||+|++||++||.+++.+++++.+++++++||+|+|+++|+|++||+.
T Consensus       268 ~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l  345 (442)
T KOG3796|consen  268 PQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLL  345 (442)
T ss_pred             ccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHH
Confidence             68999999999999999999999995 59999999999999999999999999999999999999999999999974

>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix

Probab=84.00  E-value=16  Score=37.38  Aligned_cols=143  Identities=16%  Similarity=0.122  Sum_probs=91.2

Q ss_pred             cccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHH---HHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCc
Q 017570           20 WLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVN---SAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGA   96 (369)
Q Consensus        20 ~~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~---~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~   96 (369)
                      ..+.-|..+..+.+.+. +   .|..-|++|.....|...   +++..+++.+.+.+.|.++.|-.. |+        .+
T Consensus       184 ~~~~~s~~~~~lG~~lL-w---~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk--------~~  250 (399)
T PF00909_consen  184 PIPPHSPPLAMLGTLLL-W---FGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK--------WS  250 (399)
T ss_dssp             S--HCHHHHHHHHHHHH-H---HHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS----------
T ss_pred             CCCCCcHHHhhhhHHHH-H---HHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc--------cc
Confidence            34455667888877665 4   366667777776666555   445667888888999987765333 11        00


Q ss_pred             ccchhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccc
Q 017570           97 PALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVG  176 (369)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~  176 (369)
                                                         ...+.+.+.|.   .+...+-++-+++.+-++..++ ++.++...
T Consensus       251 -----------------------------------~~~~~nG~laG---lVaita~~~~v~p~~A~~iG~i-ag~i~~~~  291 (399)
T PF00909_consen  251 -----------------------------------MVGICNGALAG---LVAITAGAGYVTPWGALLIGAI-AGLISYFG  291 (399)
T ss_dssp             -----------------------------------HHHHHHHHHHH---HHHHTTTTTTS-HHHHHHHHHH-HHHHHHHH
T ss_pred             -----------------------------------hhhhhhhhhhh---hhheecccCCCcHHHHHHhhhh-Hhhhhhhh
Confidence                                               11223333333   3333555577888888888877 55555443


Q ss_pred             ceeeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCC
Q 017570          177 AFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL  219 (369)
Q Consensus       177 ahWvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~  219 (369)
                      .+|     ++++++..|-.|...||..+|..|...+-+.-.+.
T Consensus       292 ~~~-----l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~  329 (399)
T PF00909_consen  292 VSW-----LLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPE  329 (399)
T ss_dssp             HHH-----HHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCH
T ss_pred             eec-----ccceeEeccccceEeeeeccHHHHHHHHHHHhccc
Confidence            332     25789999999999999999999998887775543

It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
1xqe_A	418	The Mechanism Of Ammonia Transport Based On The Cry		2e-36
2ns1_A	412	Crystal Structure Of The E. Coli Ammonia Channel Am		2e-36
2nmr_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		2e-36
2npg_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		2e-36
2npe_A	424	An Unusual Twin-his Arrangement In The Pore Of Ammo		2e-36
2nuu_A	415	Regulating The Escherichia Coli Ammonia Channel: Th		2e-35
2now_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		2e-35
3c1i_A	424	Substrate Binding, Deprotonation And Selectivity At		2e-35
3c1h_A	424	Substrate Binding, Deprotonation And Selectivity At		2e-35
2npd_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		4e-35
2npk_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		4e-35
2npc_A	424	An Unusual Twin-His Arrangement In The Pore Of Ammo		4e-35
3c1j_A	424	Substrate Binding, Deprotonation And Selectivity At		3e-34
1u77_A	385	Crystal Structure Of Ammonia Channel Amtb From E. C		1e-33
2b2f_A	399	Ammonium Transporter Amt-1 From A.Fulgidus (Native)		4e-31

>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 156/304 (51%), Gaps = 17/304 (5%)
Query: 22  NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYR 81
           +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y 
Sbjct: 15  DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 82  MAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFA 141
           +AFG+             G  +      +     E+     +   +  +A    FQ +FA
Sbjct: 75  LAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA----FQGSFA 117
Query: 142 AITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIH 201
            ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+H
Sbjct: 118 CITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVH 177
Query: 202 VSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASS 261
           +++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  ++
Sbjct: 178 INAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAA 237
Query: 262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMG 321
           +A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G
Sbjct: 238 LAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIG 297
Query: 322 ILSG 325
           +++G
Sbjct: 298 VVAG 301

>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+ +++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVEINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               G N G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ + A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+ +++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVFINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+ +++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 158/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+ +++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVAINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 157/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ + A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSAACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               G N G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 157/311 (50%), Gaps = 20/311 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+    + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +A G+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLASGE-------------GNNFFGNINWLXLKNIELTAVXGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHXVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSG 325
             A+++G+++G
Sbjct: 282 GGALIIGVVAG 292

>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 159/318 (50%), Gaps = 25/318 (7%)
Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
           ++ G+ AW + ++ LV +  +PG+   YA +V++K AVN   +   +    ++ W+   Y
Sbjct: 1   MSDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            ++FG+ +    G     L    L G          V G+ +           + +Q  F
Sbjct: 60  SVSFGNDISGIIG----GLNYALLSG----------VKGEDL---------LFMMYQMMF 96
Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           AA+T+ +L  ++  R  + +++    LWL F Y   A  LWGGG+L + G +D++GG V+
Sbjct: 97  AAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMVV 156
Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIAS 260
           H+SSG A L  A  +G R   ++    P+++               GFNGG+  AA+  +
Sbjct: 157 HISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVA 216
Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
             A++ TN +AA +  VW  +  I  GKP  +G V G + GL  ITP AG V    AIV+
Sbjct: 217 INAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVI 275
Query: 321 GILSGSIPWVTMMILHKK 338
           G+++G + ++ M    KK
Sbjct: 276 GLVAGIVCYLAMDFRIKK 293

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
1u7g_A	385	Probable ammonium transporter; right handed helica	6e-79
2b2h_A	399	AMT-1, ammonium transporter; membrane protein, tra	4e-77
3b9w_A	407	Ammonium transporter family; membrane protein, amm	3e-50
3hd6_A	490	Ammonium transporter RH type C; ammonia, channel,	4e-36

>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385

 Score =  246 bits (630), Expect = 6e-79
 Identities = 100/321 (31%), Positives = 166/321 (51%), Gaps = 17/321 (5%)

Query: 18  PDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVL 77
           P   +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+
Sbjct: 2   PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61

Query: 78  VCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQ 137
             Y +A G+    F+G     +    L                   +   Y       FQ
Sbjct: 62  YGYSLASGEGN-NFFG----NINWLMLKNIELTAVMG---------SIYQYIHVA---FQ 104

Query: 138 FTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGG 197
            +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG
Sbjct: 105 GSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGG 164

Query: 198 YVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH 257
            V+H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+
Sbjct: 165 TVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN 224

Query: 258 IASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAA 317
             +++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +    A
Sbjct: 225 EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGA 284

Query: 318 IVMGILSGSIPWVTMMILHKK 338
           +++G+++G      + +L + 
Sbjct: 285 LIIGVVAGLAGLWGVTMLKRL 305

>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399

 Score =  242 bits (619), Expect = 4e-77
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 27/308 (8%)

Query: 21  LNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVC 79
           ++ G+ AW + ++ LV +  M PG+   YA +V++K AVN   +   +    ++ W+   
Sbjct: 1   MSDGNVAWILASTALVML--MVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYG 58

Query: 80  YRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFT 139
           Y ++FG+ +    G     L    L G  +  +                     + +Q  
Sbjct: 59  YSVSFGNDISGIIG----GLNYALLSG-VKGEDLLF------------------MMYQMM 95

Query: 140 FAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYV 199
           FAA+T+ +L  ++  R  + +++    LWL F Y   A  LWGGG+L + G +D++GG V
Sbjct: 96  FAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMV 155

Query: 200 IHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259
           +H+SSG A L  A  +G R   ++    P+++ L L GA LLW GW GFNGG+  AA+  
Sbjct: 156 VHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDV 215

Query: 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIV 319
           +  A++ TN +AA +  VW  +  I  GKP  +G V G + GL  ITP AG V    AIV
Sbjct: 216 AINAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIV 274

Query: 320 MGILSGSI 327
           +G+++G +
Sbjct: 275 IGLVAGIV 282

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407

 Score =  172 bits (438), Expect = 3e-50
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 22/277 (7%)

Query: 53  KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPE 112
           +  +++N   M+L  F  +++      +    G  L+   G     L +           
Sbjct: 16  QYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLR----------- 64

Query: 113 STHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFS 172
                    +        +        FA  T ++  G+VLGR+ +  +     L+++  
Sbjct: 65  ------ANGIFGHALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPV 117

Query: 173 YTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL-KSDKERFPPNNV 231
           Y +  + +         G  D +G   IH      GL  +  +     ++        + 
Sbjct: 118 YLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSD 177

Query: 232 LLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCL-DVIFFGKPS 290
              + G+ +LW+ W  F               I+NT +A   + L    L  +   GK S
Sbjct: 178 RFSMLGSMVLWLFWPSFATAI--VPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKAS 235

Query: 291 VIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSI 327
           ++      + G V I     +V    A V+G+L G+I
Sbjct: 236 IVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAI 272

>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490

 Score =  136 bits (343), Expect = 4e-36
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 13/198 (6%)

Query: 136 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYS 195
               F   +V +  G+VLG+++    +            V  F++     L    V D  
Sbjct: 131 INADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ------VTLFAVNEFILLNLLKVKDAG 184

Query: 196 GGYVIHVSSGIAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGA 252
           G   IH      GLT    +  R      +++     + L  + G   LWM W  FN   
Sbjct: 185 GSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAI 244

Query: 253 PYAAHIASSIAILNTNVAAATSLLVWTCLDVIF--FGKPSVIGAVQGMMTGLVCI-TPGA 309
            Y    +   A +NT  + A  +L    +       GK  ++      + G V + T   
Sbjct: 245 SYHGD-SQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAE 303

Query: 310 GLVQSWAAIVMGILSGSI 327
            ++  + A+++G + G I
Sbjct: 304 MMLMPYGALIIGFVCGII 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
1u7g_A	385	Probable ammonium transporter; right handed helica	100.0
2b2h_A	399	AMT-1, ammonium transporter; membrane protein, tra	100.0
3b9w_A	407	Ammonium transporter family; membrane protein, amm	100.0
3hd6_A	490	Ammonium transporter RH type C; ammonia, channel,	100.0

>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A

Probab=100.00  E-value=3.5e-95  Score=724.42  Aligned_cols=319  Identities=31%  Similarity=0.534  Sum_probs=297.3

Q ss_pred             cccchhHHHHHHHHHHHHHHhH-HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCccc
Q 017570           20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA   98 (369)
Q Consensus        20 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~   98 (369)
                      .+|+.|++|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|+|+.+++
T Consensus         4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~   81 (385)
T 1u7g_A            4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL   81 (385)
T ss_dssp             CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred             ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence            46789999999999999 9999 9999999999999999999999999999999999999999999987 7899986543


Q ss_pred             chhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccce
Q 017570           99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF  178 (369)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ah  178 (369)
                      +    +.+.+  ++          ..++++|+..+++||++||++|++|++||++||+|+.+|++|+++|++++|||++|
T Consensus        82 ~----l~~~~--~~----------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ah  145 (385)
T 1u7g_A           82 M----LKNIE--LT----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAH  145 (385)
T ss_dssp             G----GTTCC--TT----------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHH
T ss_pred             h----ccCCC--Cc----------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhh
Confidence            2    10110  00          01124889999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccch
Q 017570          179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI  258 (369)
Q Consensus       179 WvW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~  258 (369)
                      |+|++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..++
T Consensus       146 wvW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~  225 (385)
T 1u7g_A          146 MVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE  225 (385)
T ss_dssp             HHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred             eeEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccc
Confidence            99999999999999999999999999999999999999999988889999999999999999999999999999999888


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhh
Q 017570          259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKK  338 (369)
Q Consensus       259 ~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~  338 (369)
                      +++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++++++++|
T Consensus       226 ~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~  305 (385)
T 1u7g_A          226 IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL  305 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             ccccCccccccccchhccccee
Q 017570          339 CSLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       339 l~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                          +|||||||++++|+++|+
T Consensus       306 ----l~iDD~l~a~~vHgv~Gi  323 (385)
T 1u7g_A          306 ----LRVDDPCDVFGVHGVCGI  323 (385)
T ss_dssp             ----HCSCCGGGHHHHHHHHHH
T ss_pred             ----CCCCCCCCCEeecccccH
Confidence                699999999999998764

>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A

Probab=100.00  E-value=3.4e-93  Score=712.50  Aligned_cols=310  Identities=33%  Similarity=0.614  Sum_probs=289.1

Q ss_pred             ccchhHHHHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccch
Q 017570           21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG  100 (369)
Q Consensus        21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~  100 (369)
                      +|++|++|+|+|++|| ++|||||+|+|+|++|+||++|+++||++++++++++||++||+++||++.++|||+.++++ 
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~-   78 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYAL-   78 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGG-
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhh-
Confidence            4679999999999999 89999999999999999999999999999999999999999999999987678999854321 


Q ss_pred             hhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceee
Q 017570          101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL  180 (369)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWv  180 (369)
                         + ...  .                .+...+++||++||++|++|++||++||+|+.+|++|+++|+++||||++||+
T Consensus        79 ---~-~~~--~----------------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwv  136 (399)
T 2b2h_A           79 ---L-SGV--K----------------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWL  136 (399)
T ss_dssp             ---G-TTC--C----------------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ---c-cCC--C----------------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhhe
Confidence               1 100  0                01267999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhh
Q 017570          181 WGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS  260 (369)
Q Consensus       181 W~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~  260 (369)
                      |++|||.++|++|||||++||++||++||++++++|||++|++++++|||++++++|+++||+||||||+||++..++++
T Consensus       137 W~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a  216 (399)
T 2b2h_A          137 WGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVA  216 (399)
T ss_dssp             HSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHH
T ss_pred             ECchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchh
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999988899


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 017570          261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCS  340 (369)
Q Consensus       261 ~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~  340 (369)
                      +++++||++|+++|+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|++++ .+++|  
T Consensus       217 ~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k--  292 (399)
T 2b2h_A          217 INAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK--  292 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH--
Confidence            9999999999999999999999998 9999999999999999999999999999999999999999999988 44443  


Q ss_pred             ccCccccccccchhccccee
Q 017570          341 LLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       341 ~~~~IDD~~~~~~~Hg~~~~  360 (369)
                        +|||||||++++|+++|+
T Consensus       293 --l~iDD~l~a~~vHgv~Gi  310 (399)
T 2b2h_A          293 --KKIDESLDAWAIHGIGGL  310 (399)
T ss_dssp             --TTCCCTTCHHHHHHHHHH
T ss_pred             --cCCCCCCCceeccchhhH
Confidence              799999999999999764

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*

Probab=100.00  E-value=2.5e-71  Score=555.02  Aligned_cols=286  Identities=16%  Similarity=0.207  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhhhhccCCC
Q 017570           30 MTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRAR  109 (369)
Q Consensus        30 l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~~~  109 (369)
                      ..-...|  ++.+||.++++++  |||..+.+.+|++..+ ..++|++++|.       ++|..             +  
T Consensus        19 ~f~dv~v--Mi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~-------~Gf~~-------------~--   71 (407)
T 3b9w_A           19 YSINILA--MLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA-------NGIFG-------------H--   71 (407)
T ss_dssp             HHHHHHH--HHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH-------TTTTS-------------S--
T ss_pred             hhhhHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc-------ccccC-------------C--
Confidence            3344445  4567999999998  9999999999999854 78899999982       12211             0  


Q ss_pred             CCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeecccccccc
Q 017570          110 VPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQW  189 (369)
Q Consensus       110 ~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~~l  189 (369)
                                      +.+|+..+++||++||++|++|++||++||+|+.+|++|++ |.+++|||.+||+|++||+...
T Consensus        72 ----------------g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~gG~~~~~  134 (407)
T 3b9w_A           72 ----------------ALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLDNASGLTE  134 (407)
T ss_dssp             ----------------CCCSSSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTTCTTSSCT
T ss_pred             ----------------CcchHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeCCcchhhc
Confidence                            12667789999999999999999999999999999999995 6788999999999998998777


Q ss_pred             CceecCCcEEehhhhhHHHHHHHHHHcCCCCCC-CCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHHHHhH
Q 017570          190 GVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSD-KERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTN  268 (369)
Q Consensus       190 G~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~-~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~  268 (369)
                      |++|||||++||++||++||+++++||||++|+ +++++|||++++++|+++||+||||||+|  +..++.+.++++||+
T Consensus       135 G~~DfAGs~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~  212 (407)
T 3b9w_A          135 GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTL  212 (407)
T ss_dssp             TCCCTTCTTTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHH
T ss_pred             ceeeccCceEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhH
Confidence            999999999999999999999999999997652 22389999999999999999999999999  455788999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhccccCcccc
Q 017570          269 VAAATSLLVWTCLDVI-FFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVSF  347 (369)
Q Consensus       269 la~a~g~l~~~~~~~~-~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~~~~IDD  347 (369)
                      +|+++|+++|++++++ .+||+|+.+++||+|||||||||+|++++||+|++||+++|++|+++++++++++++|+||||
T Consensus       213 lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD  292 (407)
T 3b9w_A          213 LALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTID  292 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999987 789999999999999999999999999999999999999999999999999888888899999


Q ss_pred             ccccchhcccceee
Q 017570          348 TFLKLFYFLTIASF  361 (369)
Q Consensus       348 ~~~~~~~Hg~~~~~  361 (369)
                      |||++++|+++|+.
T Consensus       293 ~l~a~~vHgv~Gi~  306 (407)
T 3b9w_A          293 TCGVHNLHGLPGLL  306 (407)
T ss_dssp             TTCHHHHTTHHHHH
T ss_pred             CCCCeecchHHHHH
Confidence            99999999998763

>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-60  Score=485.93  Aligned_cols=285  Identities=17%  Similarity=0.208  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccchhhhhccC
Q 017570           28 WQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGR  107 (369)
Q Consensus        28 w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~~~~~~~~~  107 (369)
                      +-..--.-||  +..||.+|-.=+-|  .-.+.+--|++..+++ ++|-++=-++- .                     .
T Consensus        65 Yp~fqDv~vM--i~~GfGFLmtflkr--yg~ssv~~n~l~~a~~-~Qwa~l~~g~~-~---------------------~  117 (490)
T 3hd6_A           65 YPSFQDVHVM--VFVGFGFLMTFLQR--YGFSAVGFNFLLAAFG-IQWALLMQGWF-H---------------------F  117 (490)
T ss_dssp             HHHHHHHHHH--HHTHHHHHGGGSTT--CHHHHHHHHHHHHHHH-HHHHHHHHHHT-T---------------------C
T ss_pred             CccchhHHHH--HHHHHHHHHHHHHH--hccHHHHHHHHHHHHH-HHHHHHHHHHh-c---------------------c
Confidence            4445555553  33477777554433  3345666677666654 77765422221 0                     0


Q ss_pred             CCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhcccceeeecccccc
Q 017570          108 ARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLY  187 (369)
Q Consensus       108 ~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahWvW~~GwL~  187 (369)
                        .             .++.+|..++++||++||++|++|++||++||+|+.+|++|+++| +++||| .||+    ||.
T Consensus       118 --~-------------~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~----~L~  176 (490)
T 3hd6_A          118 --L-------------QDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI----LLN  176 (490)
T ss_dssp             --B-------------TTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH----HHT
T ss_pred             --c-------------cCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH----HHh
Confidence              0             012377889999999999999999999999999999999999885 778997 5676    688


Q ss_pred             ccCceecCCcEEehhhhhHHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchhhHHHH
Q 017570          188 QWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL---KSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAI  264 (369)
Q Consensus       188 ~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~---g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~  264 (369)
                      ++|++|||||++||++||++||+++++||||.   ++++++++|||++++++|+++||+||||||+|++.. ++.+.+++
T Consensus       177 ~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~~~~~a~  255 (490)
T 3hd6_A          177 LLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GDSQHRAA  255 (490)
T ss_dssp             TSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HHHHHHHH
T ss_pred             ccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-chHHHHHH
Confidence            99999999999999999999999999999993   445667889999999999999999999999998764 56789999


Q ss_pred             HHhHHHHHHHHHHHHHHHHH--HcCCCcHHHhhhhhhcccccccccCC-CCChHHHHHHHHHHhHHHHHHHHHHHhhccc
Q 017570          265 LNTNVAAATSLLVWTCLDVI--FFGKPSVIGAVQGMMTGLVCITPGAG-LVQSWAAIVMGILSGSIPWVTMMILHKKCSL  341 (369)
Q Consensus       265 ~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~laGlVaIta~a~-~v~p~~A~iiG~iag~v~~~~~~~l~~~l~~  341 (369)
                      +||++|+++|+++|++++++  .+||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+++++++++++++
T Consensus       256 ~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~  335 (490)
T 3hd6_A          256 INTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLES  335 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999986  57899999999999999999999999 6999999999999999999999988777777


Q ss_pred             cCccccccccchhcccceee
Q 017570          342 LQQVSFTFLKLFYFLTIASF  361 (369)
Q Consensus       342 ~~~IDD~~~~~~~Hg~~~~~  361 (369)
                      |+|||||||++++|+++|+.
T Consensus       336 kl~iDD~lgv~~vHGv~Gi~  355 (490)
T 3hd6_A          336 RLHIQDTCGINNLHGIPGII  355 (490)
T ss_dssp             HHCCCCTTCHHHHTHHHHHH
T ss_pred             HCCCCccccchHHhhHHHHH
Confidence            89999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1u7ga_	383	f.44.1.1 (A:) Ammonium transporter AmtB {Escherich	4e-39

>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  141 bits (355), Expect = 4e-39
 Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 17/319 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
            +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A G+    F       L    L                             V FQ +F
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVM-----------------GSIYQYIHVAFQGSF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+
Sbjct: 106 ACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVV 165

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+  +
Sbjct: 166 HINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           ++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +    A+++
Sbjct: 226 ALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII 285

Query: 321 GILSGSIPWVTMMILHKKC 339
           G+++G      + +L +  
Sbjct: 286 GVVAGLAGLWGVTMLKRLL 304

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1u7ga_	383	Ammonium transporter AmtB {Escherichia coli [TaxId	100.0

>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-86  Score=660.45  Aligned_cols=318  Identities=31%  Similarity=0.534  Sum_probs=295.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhH-HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCCcccc
Q 017570           21 LNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPAL   99 (369)
Q Consensus        21 ~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~l~~~~v~~i~w~~~Gy~lafG~~~~~fiG~~~~~~   99 (369)
                      .|++|++|+++|+.|| ++|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++++|+.++++
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            5789999999999999 7887 8999999999999999999999999999999999999999999986 66777765432


Q ss_pred             hhhhhccCCCCCCCccccCCccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHhhhccccee
Q 017570          100 GQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFS  179 (369)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~ip~~~~~~fq~~Faa~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~ahW  179 (369)
                      ..     ..  +.         +.....+|++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||
T Consensus        81 ~~-----~~--~~---------~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hw  144 (383)
T d1u7ga_          81 LK-----NI--EL---------TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHM  144 (383)
T ss_dssp             GT-----TC--CT---------TCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cc-----Cc--cc---------ccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHhe
Confidence            11     10  00         0112347899999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccccCceecCCcEEehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHhhhHhhhccCcccccchh
Q 017570          180 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (369)
Q Consensus       180 vW~~GwL~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~g~~~~~~~~~n~~~~~lG~~lLw~GW~gFN~gs~~~~~~~  259 (369)
                      +|++|||+++|++||+||++||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+...++.
T Consensus       145 vw~~g~l~~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~  224 (383)
T d1u7ga_         145 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEI  224 (383)
T ss_dssp             HHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHH
T ss_pred             ecCCCccccCCceeccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHcCCCcHHHhhhhhhcccccccccCCCCChHHHHHHHHHHhHHHHHHHHHHHhhc
Q 017570          260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC  339 (369)
Q Consensus       260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~laGlVaIta~a~~v~p~~A~iiG~iag~v~~~~~~~l~~~l  339 (369)
                      ..++.+||++|+++++++++..+++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++| 
T Consensus       225 ~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~-  303 (383)
T d1u7ga_         225 AALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL-  303 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888765 


Q ss_pred             cccCccccccccchhccccee
Q 017570          340 SLLQQVSFTFLKLFYFLTIAS  360 (369)
Q Consensus       340 ~~~~~IDD~~~~~~~Hg~~~~  360 (369)
                         +|||||||++++|+++|+
T Consensus       304 ---~~iDD~~~~~~vHg~~Gi  321 (383)
T d1u7ga_         304 ---LRVDDPCDVFGVHGVCGI  321 (383)
T ss_dssp             ---HCSCCGGGHHHHHHHHHH
T ss_pred             ---cccccccceEeehhhhHH
Confidence               699999999999998764