Citrus Sinensis ID: 017583

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT
Secondary Structure (PSIPRED)
ccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccEcccHHHcccHHHcccccccccccccccccccEEEccccHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msllytpnfkypegdlrknqefmdssahydqqndqlsdssltryrsapssFLESLVngnsgggncedyrcfrpsspeiDNFLAKymlpcngsgdsgshasqEFGVkamkqeepepiteqneysngssqmvyqnlpvhsvgndisVNVGNAMDNSYGVASSMALENSMQErmatgngsnltrqnsspaglfsnlgvdngfagmrnggcfracngtnleastSASRLinrvnlspgdpwddasfsgvkrardstcnmsfgldayetqngnsgnqstRLVHHLSLPKTSAEMAAVEKFLHfqgsvpckirakrgcathprsIAERVRRTRISERMRKLQDlfpnmdkqtNTAEMLDLAVEHIKDLQKQVKVT
Flexible Loop (DISEMBL)
msllytpnfkypegdlRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINrvnlspgdpwddaSFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHfqgsvpckirakrgcathprsiaervrrtrISERMrklqdlfpnmdkQTNTAEMLDLAVEHIkdlqkqvkvt
Low Complexity Region (SEG)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT
Disordered region (IsUnstruct)
***************************************************************NCEDYRCFRPSSPEIDNFLAKYMLPC*******************************************NLPVHSVGNDISVNV*****************************************LFSNLGVDNGFAGMRNGGCFRACNGTNLE*******LI*************************************************************EMAAVEKFLHFQGSVPCKIRAKRGCATH******************************************************
Disordered Region (DISOPRED)
********************************************RSAPSSFLESLVNGNSG**************************************************************************************************************************************************************************************************************************************************************************ISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK**
Disordered Region (DISEMBL)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNG********SQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT
Disordered Region (DISPRO)
*SLLYTPNFKYPEGDLRKNQEFMDSSA*Y******LSDSSLTRYRSAPSSFLESLVNGNS****C****************************************************************************************************************************FSNLGVDNGFAGMRNGGCF******************N*V*LSPGDPW***************************************************MAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q9C690	379	Transcription factor bHLH	yes	no	0.859	0.836	0.387	1e-52
Q66GR3	359	Transcription factor bHLH	no	no	0.826	0.849	0.376	7e-51
Q8H102	362	Transcription factor bHLH	no	no	0.794	0.809	0.359	1e-34
Q9ZW81	297	Transcription factor bHLH	no	no	0.317	0.393	0.55	2e-28
Q9C8P8	259	Transcription factor bHLH	no	no	0.490	0.698	0.389	3e-28
Q9M0R0	262	Transcription factor bHLH	no	no	0.189	0.267	0.714	6e-24
Q9ZUG9	350	Transcription factor bHLH	no	no	0.173	0.182	0.6	3e-14
Q9LSQ3	297	Transcription factor bHLH	no	no	0.170	0.212	0.578	6e-14
Q8S3D5	310	Transcription factor bHLH	no	no	0.170	0.203	0.593	8e-14
Q8GY61	335	Transcription factor bHLH	no	no	0.168	0.185	0.548	4e-12

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 204/377 (54%), Gaps = 60/377 (15%)

Query: 29  YDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFLAKYMLP 88
           +D Q+ +  +S L RY+SAPSS+  S       G + E++   RP+SPE +  L+ ++  
Sbjct: 13  HDHQHQRPRNSGLIRYQSAPSSYFSSF------GESIEEF-LDRPTSPETERILSGFLQT 65

Query: 89  CNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVG 148
            + S +  S     F     +++ PE  TE  +     +        V S   +ISVN  
Sbjct: 66  TDTSDNVDSFLHHTFNSDGTEKKPPEVKTEDEDAEIPVTATATAMEVVVSGDGEISVNP- 124

Query: 149 NAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAG-MRNGGC 207
              + S G  +S++     +E+      +NL R NSSPAGLFS++ V+  +A  M++ G 
Sbjct: 125 ---EVSIGYVASVSRNKRPREKDDRTPVNNLARHNSSPAGLFSSIDVETAYAAVMKSMGG 181

Query: 208 FRACN---GTNLEAS--TSASRL----------INRVNLSPGDPWDDASFSG--VKRARD 250
           F   N    +N EAS  T  S+L          I+ V++ PG       FS     R   
Sbjct: 182 FGGSNVMSTSNTEASSLTPRSKLLPPTSRAMSPISEVDVKPG-------FSSRLPPRTLS 234

Query: 251 STCNMSFG-------------------LDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAA 291
              N SFG                   LD Y+T++ +S ++   L HH+SLPK+   ++ 
Sbjct: 235 GGFNRSFGNEGSASSKLTALARTQSGGLDQYKTKDEDSASRRPPLAHHMSLPKS---LSD 291

Query: 292 VEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEM 351
           +E+ L    S+PCKIRAKRGCATHPRSIAERVRRT+ISERMRKLQDL PNMD QTNTA+M
Sbjct: 292 IEQLL--SDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADM 349

Query: 352 LDLAVEHIKDLQKQVKV 368
           LDLAV++IKDLQ+QVK 
Sbjct: 350 LDLAVQYIKDLQEQVKA 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  201 bits (511), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 197/382 (51%), Gaps = 77/382 (20%)

Query: 23  MDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFL 82
           MDS+ H    N   + S L R+RSAPSS L + V+ +  G +              D  L
Sbjct: 1   MDSNNHLYDPNP--TGSGLLRFRSAPSSVLAAFVDDDKIGFDS-------------DRLL 45

Query: 83  AKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMV---------YQN 133
           ++++     +GD GS           K E+  P++  N   + ++ +          +  
Sbjct: 46  SRFVTSNGVNGDLGSP----------KFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLG 95

Query: 134 LPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNL 193
           LP H             + NS G+   + + N   + +     SNL RQ+SSPAG+F+NL
Sbjct: 96  LPPHYPRQ------SKGIMNSVGLDQFLGINNHHTKPVE----SNLLRQSSSPAGMFTNL 145

Query: 194 GVDNGFAGMRN--------------GGCFRACNGTNLEAS-----TSASRLINRVNLSPG 234
              NG+  MRN               G  R C+ ++   S     +    +    N  P 
Sbjct: 146 SDQNGYGSMRNLMNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPETNF-PY 204

Query: 235 DPWDDAS-----FSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPK---TS 286
             W+D S      S +KR  +    +  G      QNG SGN+   L HHLSLPK   T+
Sbjct: 205 SHWNDPSSFIDNLSSLKREAEDDGKLFLG-----AQNGESGNRMQLLSHHLSLPKSSSTA 259

Query: 287 AEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQT 346
           ++M +V+K+L  Q SVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQT
Sbjct: 260 SDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQT 319

Query: 347 NTAEMLDLAVEHIKDLQKQVKV 368
           NT++MLDLAV++IKDLQ+Q K+
Sbjct: 320 NTSDMLDLAVDYIKDLQRQYKI 341

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 176/356 (49%), Gaps = 63/356 (17%)

Query: 41  LTRYRSAPSSFLESLVNGNSGGG--NCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSH 98
           L RY SAP SFL S+V+   GGG  N  D+  ++PSS   DNF+  +     G+ DS S 
Sbjct: 23  LIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSS---DNFIGNFF---TGAADSSSL 76

Query: 99  ASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVA 158
            S                   N  S+G  Q+   N   ++   DI       +D SYG  
Sbjct: 77  RSDSTTCGV------------NNSSDGQKQLGNNN--NNNSNKDI------FLDRSYGGF 116

Query: 159 SSMALENSMQE--RMATGNGSNLTRQNSSPAGLFSNLGVD-NGFA-----------GMRN 204
           + ++ ++   +     +    +L RQ SSPA  F+ L  D N F+           G  N
Sbjct: 117 NEISQQHKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSN 176

Query: 205 GGCFRACNGTNLEASTSASRL-INRVNLSPGDPWDDASFSGVKRARDSTCNMSFGLDAYE 263
           GG   +   + L  +   S   IN VN +P       SFS       +T       D+++
Sbjct: 177 GGRGHSRLKSQLSFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATT-------DSWD 229

Query: 264 TQNGNSGNQSTR-----------LVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRG 311
             +G+ G   TR           L    SLP  ++ M  ++ F+   + SVPCKIRAKRG
Sbjct: 230 DGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRG 288

Query: 312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           CATHPRSIAER RRTRIS +++KLQDL PNMDKQT+ ++MLDLAV+HIK LQ Q++
Sbjct: 289 CATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 89/120 (74%), Gaps = 3/120 (2%)

Query: 250 DSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRA 308
           +S+ ++SF +D    ++ NS   +  L    S+P+T+ EMA +E  ++  + SVPC+ RA
Sbjct: 178 NSSSHISFTIDQPGKRSKNSDFFT--LETQYSMPQTTLEMATMENLMNIPEDSVPCRARA 235

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368
           KRG ATHPRSIAER RRTRIS +++KLQ+L PNMDKQT+ A+MLDLAVEHIK LQ QV+V
Sbjct: 236 KRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 119/231 (51%), Gaps = 50/231 (21%)

Query: 139 VGNDISVNVGNAMDNSYGVASSM--ALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVD 196
            GN+ S  V  + D+S+   SS+   L N  Q       G    RQNSSPA   S     
Sbjct: 60  TGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQ-------GGGFHRQNSSPADFLSG---- 108

Query: 197 NGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVKRARDSTCNMS 256
              +G    G F     +N     +   L   V++SP            KR+RD     S
Sbjct: 109 ---SGSGTDGYF-----SNFGIPANYDYLSTNVDISP-----------TKRSRDMETQFS 149

Query: 257 FGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHP 316
             L   +   G SG      +  +++ K             F+ SVPC++RAKRGCATHP
Sbjct: 150 SQLKEEQMSGGISG------MMDMNMDKI------------FEDSVPCRVRAKRGCATHP 191

Query: 317 RSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           RSIAERVRRTRIS+R+R+LQ+L PNMDKQTNTA+ML+ AVE++K LQ Q++
Sbjct: 192 RSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQ 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 63/70 (90%)

Query: 298 FQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVE 357
            + SV  ++RAKRGCATHPRSIAERVRRTRIS+R+RKLQ+L PNMDKQTNTA+ML+ AVE
Sbjct: 176 MEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVE 235

Query: 358 HIKDLQKQVK 367
           ++K LQ+Q++
Sbjct: 236 YVKVLQRQIQ 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 304 CKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQ 363
            KIRA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 364 KQVKV 368
            QVKV
Sbjct: 195 LQVKV 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           ++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  +E+++ LQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 365 QVKV 368
           QVKV
Sbjct: 157 QVKV 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           K+RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 365 QVKV 368
           QVKV
Sbjct: 188 QVKV 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 306 IRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365
           +RA+RG AT   SIAERVRR +ISERM+ LQDL P  DK T  A MLD  + +++ LQ+Q
Sbjct: 172 VRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQ 231

Query: 366 VK 367
           ++
Sbjct: 232 IE 233

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
224106043	421	predicted protein [Populus trichocarpa]	0.962	0.843	0.597	1e-118
255544250	432	DNA binding protein, putative [Ricinus c	0.964	0.824	0.541	1e-105
224055255	413	predicted protein [Populus trichocarpa]	0.951	0.849	0.547	1e-101
359487434	408	PREDICTED: transcription factor bHLH130-	0.915	0.828	0.472	2e-78
449436269	419	PREDICTED: transcription factor bHLH130-	0.948	0.835	0.426	2e-74
147862096	446	hypothetical protein VITISV_018653 [Viti	0.864	0.715	0.429	2e-72
356525636	450	PREDICTED: transcription factor bHLH130-	0.978	0.802	0.416	4e-66
225441696	405	PREDICTED: transcription factor bHLH130-	0.848	0.772	0.418	6e-65
147789805	394	hypothetical protein VITISV_008845 [Viti	0.848	0.794	0.418	7e-65
356557136	445	PREDICTED: transcription factor bHLH128-	0.978	0.811	0.404	7e-64

>gi|224106043|ref|XP_002314023.1| predicted protein [Populus trichocarpa] gi|222850431|gb|EEE87978.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/412 (59%), Positives = 284/412 (68%), Gaps = 57/412 (13%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMD-SSAHY-DQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           M+LLY+ +FKY +G+LRK+QEFMD +  HY  QQ     +S L RYRSAPSS LESLVNG
Sbjct: 1   MNLLYSSSFKYSDGELRKSQEFMDLNPYHYHQQQQQIQQNSGLMRYRSAPSSILESLVNG 60

Query: 59  NSG--GGNCE--DYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVK-AMKQEEP 113
            SG  GG  E  DYR  R SSPE+D  LA++M  CNGSGDS S   QEFG + A+KQE  
Sbjct: 61  TSGHDGGGIESGDYRYLRSSSPEMDTMLARFMSSCNGSGDSSSQNLQEFGERPAIKQE-- 118

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQ-ERMA 172
                      G S+MVYQ+LP H++  D SV+VGN+MD+++ V SSMALENSMQ  +M+
Sbjct: 119 ----------GGDSEMVYQSLPGHNLVTDNSVSVGNSMDSAFNVMSSMALENSMQATKMS 168

Query: 173 TGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLS 232
           T NGSNL RQNSSPAGLFS+LGVDNGF  MR GG FRA NGTN EAS + ++L   VN S
Sbjct: 169 TANGSNLARQNSSPAGLFSDLGVDNGFVVMREGGSFRAGNGTNGEASPT-NKLRRHVNFS 227

Query: 233 PG-----------------------------------DPWDDASFSGVKRARDSTCNMSF 257
            G                                   D WD AS SG+KR RD+  NM  
Sbjct: 228 SGQRMLPQIAEIGEECIGGRSPEGDVSEARYMSRFTSDSWDGASLSGLKRQRDNDGNMFS 287

Query: 258 GLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQG-SVPCKIRAKRGCATHP 316
           GL+  + Q+GNSGN+ T L HHLSLPKT +E A +EKFL FQG SVPCKIRAKRG ATHP
Sbjct: 288 GLNTLDNQDGNSGNRVTGLTHHLSLPKTLSETATIEKFLDFQGNSVPCKIRAKRGFATHP 347

Query: 317 RSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368
           RSIAERVRRTRISERMRKLQ+LFPNMDKQTNTA+MLDLAVEHIKDLQKQVK 
Sbjct: 348 RSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEHIKDLQKQVKT 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544250|ref|XP_002513187.1| DNA binding protein, putative [Ricinus communis] gi|223547685|gb|EEF49178.1| DNA binding protein, putative [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/408 (54%), Positives = 272/408 (66%), Gaps = 52/408 (12%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGN- 59
           MSLLY+ +FK+ EG+ RKNQEFMD + H+  Q+    +S L RYRSAP SFL+SL+NG  
Sbjct: 17  MSLLYSTSFKHQEGEFRKNQEFMDLNHHHCNQDPLHHNSGLMRYRSAPGSFLDSLINGTT 76

Query: 60  SGGGN-CEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVK-AMKQEEPEPIT 117
           SGGGN C+DYR FR SSPE++  L+++M  CNGSGDS S   QE+G +  MKQE  +P  
Sbjct: 77  SGGGNECQDYRSFRSSSPEMETILSRFMSTCNGSGDSNSQNLQEYGERPEMKQEMEDP-- 134

Query: 118 EQNEYSNGSSQMVYQNLPVHSVGND-ISVNVGNAMDNSYGVASSMALENSMQER-MATGN 175
                     QMVYQ+  V+++ N+  SV++ N++D+S+ V + MA+ENS+  R  +  N
Sbjct: 135 ----------QMVYQSSAVNNLANNGNSVDISNSVDSSFNVMNPMAMENSLPARKFSAVN 184

Query: 176 GSNLTRQNSSPAGLFSNLGVDN-GFAGMRNGGCFRACNGTNLEASTSASRLINRVNLS-- 232
           GSNL RQ+SSPAG FSNLGVDN GF   +  G F+  NG N E++ S SRL N +N S  
Sbjct: 185 GSNLVRQHSSPAGFFSNLGVDNNGFTITKEVGGFQVSNGLNGESNPSTSRLGNHLNFSSG 244

Query: 233 --------------PGDPWDDASF------------------SGVKRARDSTCNMSFGLD 260
                         PG    + S                   +  KR RD+  ++   L+
Sbjct: 245 QRLLPQIAETGDENPGASSPEGSIGKRQYMNFANDSWDDSSSNDFKRLRDNDGSVYSSLN 304

Query: 261 AYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIA 320
             E Q+GNSGN+ T L HHLSLPKT+ EMA VEKFL FQGSVPCKIRAKRG ATHPRSIA
Sbjct: 305 ILENQSGNSGNRITSLTHHLSLPKTAGEMATVEKFLQFQGSVPCKIRAKRGFATHPRSIA 364

Query: 321 ERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368
           ERVRRTRISERMRKLQDLFPNMDKQTNTA+MLDLAVE+IKDLQKQVK 
Sbjct: 365 ERVRRTRISERMRKLQDLFPNMDKQTNTADMLDLAVEYIKDLQKQVKT 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055255|ref|XP_002298446.1| predicted protein [Populus trichocarpa] gi|222845704|gb|EEE83251.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/413 (54%), Positives = 267/413 (64%), Gaps = 62/413 (15%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMDSSA---HYDQQNDQLSDSSLTRYRSAPSSFLESLVN 57
           MSLLY+P+F Y +G+LRK+QEFMD +    H+ QQ     +S L  YRSAPSSFLESLVN
Sbjct: 1   MSLLYSPSFNYSDGELRKSQEFMDLNLYHYHHQQQQQIQQNSGLKSYRSAPSSFLESLVN 60

Query: 58  GNSGGGN------CEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQE 111
           G SG          EDYR  R SSP +D  L + M  CNGSGD  S   QEF      +E
Sbjct: 61  GTSGHNGGNGGVGSEDYRYLRSSSPGMDTMLKRPMSSCNGSGDFNSQNLQEF------EE 114

Query: 112 EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQ-ER 170
            P    EQ +     S+MVY++LP H++    SV+VGN++D+++ V +SM LENS Q  +
Sbjct: 115 RPAIRQEQED-----SEMVYRSLPGHNLVKGNSVSVGNSLDSAFSVMNSMDLENSKQATK 169

Query: 171 MATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVN 230
           M+T NGSNL RQNSSPAG+ SN GVDNGFA MRN G FRA NGTN EA+ S SRL + VN
Sbjct: 170 MSTRNGSNLARQNSSPAGILSNHGVDNGFAVMRNAGSFRAGNGTNGEATPSTSRLRSHVN 229

Query: 231 LSPG-----------------------------------DPWDDASFSGVKRARDSTCNM 255
            S G                                   D W DAS     R +D+  NM
Sbjct: 230 FSSGHRTLPQIAEIGEECIGGSSPEGDFSKRKYMYNFNSDTWGDAS-----RLKDNDGNM 284

Query: 256 SFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGS-VPCKIRAKRGCAT 314
             GL+  E+Q GNSGN+ T L HHLSLPKT AEMA  EKFL FQG+ VPCKIRAKRG AT
Sbjct: 285 FSGLNRRESQVGNSGNRMTGLTHHLSLPKTVAEMATAEKFLDFQGNFVPCKIRAKRGFAT 344

Query: 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           HPRSIAERVRRTRISERMRKLQ+LFP+MDKQT+TA+ LDL++E IKDLQKQVK
Sbjct: 345 HPRSIAERVRRTRISERMRKLQELFPDMDKQTSTADKLDLSIELIKDLQKQVK 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487434|ref|XP_003633592.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 191/404 (47%), Positives = 236/404 (58%), Gaps = 66/404 (16%)

Query: 10  KYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYR 69
           K+ E  LRK+ E M     Y+ Q+    +S L RY+SAPSS L S V+G+S         
Sbjct: 13  KFSEEVLRKSGELMAPDV-YNHQHHPHQNSGLMRYQSAPSSLLGSFVDGSSVH------- 64

Query: 70  CFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP---EPITEQNEYSNGS 126
             + SS E +   A+ M     SG S S   Q  GV AMK EE    E + +QN YSNGS
Sbjct: 65  -LQSSSHETETMFARLM-----SGSSDSQGLQ--GVGAMKHEEEVMVEGVPQQNGYSNGS 116

Query: 127 SQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSP 186
            QM+Y + P+ ++    S +    M++S+   +SMA ENSM+ R    N S+L RQ+SSP
Sbjct: 117 -QMIYNSQPMQTISVHNSASPRTNMESSF--MTSMAAENSMKIR--NENCSSLVRQSSSP 171

Query: 187 AGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPG------------ 234
            GLF NL  +NGF   R  G  RA N TN+EA+ S SRL N+++ S G            
Sbjct: 172 PGLFPNLTSENGFTPTREMGNLRAGNSTNVEANPSVSRLNNQISFSSGLSSCNGLLPKIS 231

Query: 235 -----------------------------DPWDDASFSGVKR-ARDSTCNMSFGLDAYET 264
                                        D W D+ FSG+ R A D+   M  GL++ E 
Sbjct: 232 EIRNENIGLHSPKDGNNSNSRCYISNFTTDSWSDSPFSGLTRMAADNDLKMFSGLNSLEA 291

Query: 265 QNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVR 324
           QN +S  +S  L HHLSLPK   ++  +EKFLHFQ SVPCKIRAKRGCATHPRSIAERVR
Sbjct: 292 QNVDSRYRSLGLTHHLSLPKNFPQITTIEKFLHFQDSVPCKIRAKRGCATHPRSIAERVR 351

Query: 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV 368
           RTRISERMRKLQ+LFPNMDKQTNTA+MLDLAVE+IKDLQKQVK 
Sbjct: 352 RTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQVKT 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436269|ref|XP_004135915.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus] gi|449521930|ref|XP_004167982.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/422 (42%), Positives = 240/422 (56%), Gaps = 72/422 (17%)

Query: 1   MSLLYTPNFKYPEGDLRKNQEFMD--SSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           MSLLY+ NFK+   +++K  +FMD  S+ ++  Q +  +   L RY SAP+S   SLV+G
Sbjct: 1   MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60

Query: 59  -------NSGGGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQE 111
                  N+GGG  EDYR  R SSPE++  L+++M  CNG  DSGS      G + +K+E
Sbjct: 61  TEGFNSSNNGGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS------GERTVKEE 114

Query: 112 EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGN--AMDNSYGVASSMALENSMQE 169
             EP+ +QN + N  S MV          N  SV+ G    + NSYGV +S   +NSMQ 
Sbjct: 115 TGEPVQQQNGFCNQPSSMV----------NTRSVDAGGRAPVGNSYGVMNSSDFDNSMQS 164

Query: 170 RMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRV 229
           ++   N SNL RQ+SSPAG FS+L  +NG    R    F  CN  +++A+  ++R+ +++
Sbjct: 165 QLGARNCSNLFRQSSSPAGFFSHLIAENGNT-TREVDKFGTCNRKDVDAAYPSTRIGSQM 223

Query: 230 NLS---------------------------------PGD----------PWDDASFSGVK 246
           NLS                                  GD           WD+++    K
Sbjct: 224 NLSGHSFGSNHMPPIAEEENKSIGIVGSSRHRQKANSGDRLQTDDFLNSSWDNSAMRDTK 283

Query: 247 RARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKI 306
           R RD+           ETQN +SGN    L HHLSLP  S     VEKFL FQ  VP +I
Sbjct: 284 RGRDNNGRAFATSIVLETQNADSGNNIRGLAHHLSLP-ISFNKDPVEKFLRFQEPVPHQI 342

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQV 366
           RAKRGCATHPRSIAER+RRTRISER++KLQ+LFP+MDKQT+TA+ML+LAVE+IK LQ+QV
Sbjct: 343 RAKRGCATHPRSIAERMRRTRISERIKKLQELFPDMDKQTSTADMLELAVEYIKGLQRQV 402

Query: 367 KV 368
           K 
Sbjct: 403 KT 404

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862096|emb|CAN80884.1| hypothetical protein VITISV_018653 [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 180/419 (42%), Positives = 231/419 (55%), Gaps = 100/419 (23%)

Query: 38  DSSLTRYRSAPSSFLESLVNGNSGGGNCEDY-----------RCF--RPSSPEIDNFLAK 84
           +SSL RYRSAPSS+  + ++G     +CE++           R F  RPSSPE +   ++
Sbjct: 16  NSSLMRYRSAPSSYFSNFIDGE----DCEEFLQHRPSSPETERIFSSRPSSPETERIFSR 71

Query: 85  YMLPCNGSGDSGSHASQEF--GVKAMKQEEPEPITEQNEY----------------SNG- 125
           +M    G+ DS SH         +AM  E    +++QN++                 NG 
Sbjct: 72  FMA-SGGTEDSSSHTVMNMRQNSQAMAPESVVVVSQQNQFMASMKHGAEVLQQQQQQNGY 130

Query: 126 --SSQMVYQN---LPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLT 180
              SQM+YQ    +P H+     +V      +NSY   SSM ++ S Q ++  GN SNL 
Sbjct: 131 ASGSQMMYQTSSPMPHHNSAAPGTV------ENSYSAVSSMGMDQSQQXKIGGGNNSNLI 184

Query: 181 RQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEAS-TSASRLINRVN--------- 230
           R +SSPAGLFS+L V+NG+A MR  G F + +GTN E S +SASRL  ++N         
Sbjct: 185 RHSSSPAGLFSHLNVENGYAIMRGMGNFGSGSGTNGEPSFSSASRLKGQINFSSGPPSSS 244

Query: 231 -------------LSPGDP-----------------------WDDA-----SFSGVKRAR 249
                        +  G P                       WDD+     SFS +K  R
Sbjct: 245 GLVTPISEMGNKSMGTGSPDNGSFGEGHSNSGGFITGFPIGSWDDSAIMSESFSSLKSVR 304

Query: 250 DSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLP-KTSAEMAAVEKFLHFQGSVPCKIRA 308
           D       GL+A E Q G   N+   L HHLSLP KTSA++  +EK+L FQ SVPCKIRA
Sbjct: 305 DDEAKTFSGLNASEAQKGEPANRPPVLAHHLSLPTKTSADLTTIEKYLQFQDSVPCKIRA 364

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           KRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNT++MLDLAV++IKDLQKQVK
Sbjct: 365 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525636|ref|XP_003531430.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 241/435 (55%), Gaps = 74/435 (17%)

Query: 1   MSLLYTPNFKYP--EGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLV-N 57
           MS++Y+P   Y   E  LRKNQ+ MDSS  + QQ+    +S L RY SAPSS L SL+ N
Sbjct: 1   MSVMYSPVLNYSDVEHQLRKNQD-MDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDN 59

Query: 58  GNSGGGNCEDYRC-------------FRPS-SPEIDNFLAKYMLPCNGSGDSGSHASQEF 103
              G  N E +               + PS S E++  L+K +LP N  G S S A QEF
Sbjct: 60  TIHGCVNEESFTSENHHHQQQQQQQHYLPSTSSEMETMLSK-LLPSNN-GWSNSEALQEF 117

Query: 104 GVKAMKQEEPEPITE----QNEYSNGSSQMVYQNLPVHSVGNDISVNVGNA-MDNSYGVA 158
           G K +KQE  E I +    QN YS G SQ++YQ+  +  + N  S +   +  D S+GV 
Sbjct: 118 GGKPVKQEIGESIPQEPPQQNGYSYGGSQLIYQSQQIQGLPNGGSSSASGSAFDGSFGVV 177

Query: 159 SSMALENSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTN--- 215
            SMA E+S+Q +M   N SNL RQ SSPA  FS   ++N  A +R  G F+A + +N   
Sbjct: 178 HSMASEDSIQSKMGIRNCSNLFRQKSSPAAFFS---IENDLAALREVGSFKADDVSNGLV 234

Query: 216 ----------------------------------LEASTSASR-LIN-------RVNLSP 233
                                             LE +   SR L+N        +    
Sbjct: 235 TASTGGLHSSHTFSSRPSSCLKRLPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFT 294

Query: 234 GDPWDDASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVE 293
            + W+ ++F+  K   +     S   +  E+Q  +   Q+  L HHLSLP +S +M+++E
Sbjct: 295 NELWESSAFNAPKTENEDEIMFSTS-NILESQEADFSFQNLGLTHHLSLPSSSTKMSSIE 353

Query: 294 KFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLD 353
           KFL  QGSVPCKIRAKRG ATHPRSIAERVRRTRISER++KLQDLFP  +KQT+TA+MLD
Sbjct: 354 KFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLD 413

Query: 354 LAVEHIKDLQKQVKV 368
           LAVE+IKDLQ++VK+
Sbjct: 414 LAVEYIKDLQQKVKI 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 221/421 (52%), Gaps = 108/421 (25%)

Query: 1   MSLLYTPNFKYP-EGDLRKNQE-FMDSSA--HYDQQNDQLSDSSLTRYRSAPSSFLESLV 56
           MSL+Y+ NFK+  E +  K +  FMDS+   H+ Q  +Q  +S L R+RSAPSS L +  
Sbjct: 12  MSLMYSSNFKHSGEEETEKTRAVFMDSNTNYHHQQNQNQPPNSGLLRFRSAPSSLLANFT 71

Query: 57  NGNSG---GGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP 113
           +   G   G N              D+F ++  +PC G  DS      +   +  +Q   
Sbjct: 72  DSGDGVHKGANL------------CDDFESERFMPCGGFQDSAMSCQSQLPPQYPRQS-- 117

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMAT 173
                                         S    +AMD SYGV +S    N+M+ +   
Sbjct: 118 ------------------------------SSTSSSAMDGSYGVVNS----NNMEAK--- 140

Query: 174 GNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSP 233
             GS+L RQ+SSPAGLFS+L   NG+A MR  G FR  N  N E S S SRL  +V+ S 
Sbjct: 141 -QGSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSS 199

Query: 234 GDP---------------------------------------------WDDAS----FSG 244
           G P                                             W+D++    FSG
Sbjct: 200 GLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSWNDSAHFENFSG 259

Query: 245 VKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPC 304
           +KR +D+   +  G +    +N   G++S  L HHLSLPKTSAEMAA+EKFL FQ SVPC
Sbjct: 260 MKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPC 319

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           KIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNTA+MLDLAVE+IKDLQK
Sbjct: 320 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 379

Query: 365 Q 365
           Q
Sbjct: 380 Q 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 176/421 (41%), Positives = 221/421 (52%), Gaps = 108/421 (25%)

Query: 1   MSLLYTPNFKYP-EGDLRKNQE-FMDSSA--HYDQQNDQLSDSSLTRYRSAPSSFLESLV 56
           MSL+Y+ NFK+  E +  K +  FMDS+   H+ Q  +Q  +S L R+RSAPSS L +  
Sbjct: 1   MSLMYSSNFKHSGEEETEKTRAVFMDSNTNYHHQQNQNQPPNSGLLRFRSAPSSLLANFT 60

Query: 57  NGNSG---GGNCEDYRCFRPSSPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAMKQEEP 113
           +   G   G N              D+F ++  +PC G  DS      +   +  +Q   
Sbjct: 61  DSGDGVHKGANL------------CDDFESERFMPCGGFQDSAMSCQSQLPPQYPRQS-- 106

Query: 114 EPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALENSMQERMAT 173
                                         S    +AMD SYGV +S    N+M+ +   
Sbjct: 107 ------------------------------SSTSSSAMDGSYGVVNS----NNMEAKQ-- 130

Query: 174 GNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSP 233
             GS+L RQ+SSPAGLFS+L   NG+A MR  G FR  N  N E S S SRL  +V+ S 
Sbjct: 131 --GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSS 188

Query: 234 GDP---------------------------------------------WDDAS----FSG 244
           G P                                             W+D++    FSG
Sbjct: 189 GLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSWNDSAHFENFSG 248

Query: 245 VKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPC 304
           +KR +D+   +  G +    +N   G++S  L HHLSLPKTSAEMAA+EKFL FQ SVPC
Sbjct: 249 MKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPC 308

Query: 305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
           KIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNTA+MLDLAVE+IKDLQK
Sbjct: 309 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQK 368

Query: 365 Q 365
           Q
Sbjct: 369 Q 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557136|ref|XP_003546874.1| PREDICTED: transcription factor bHLH128-like [Glycine max]

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 174/430 (40%), Positives = 237/430 (55%), Gaps = 69/430 (16%)

Query: 1   MSLLYTPNFKYP--EGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNG 58
           MS++Y+P   Y   E  L KNQ+ MDSS  + QQ+   S+S L RY SAPSS L SL++ 
Sbjct: 1   MSVMYSPVLNYSDVEYQLWKNQD-MDSSIGHPQQHCHQSNSGLLRYCSAPSSMLASLIDN 59

Query: 59  NSGG---------GNCEDYRCFRPS-SPEIDNFLAKYMLPCNGSGDSGSHASQEFGVKAM 108
              G          N +  + + PS S E++  L+K  +P +  G S S   QEFG K +
Sbjct: 60  TIHGCVNEEPFTSENQQQQQHYLPSTSSEMETMLSK--MPPSNIGWSNSEPLQEFGGKPV 117

Query: 109 KQE----EPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALE 164
           KQE     P+   +QN YS G SQ++YQ+  +  + N  S+   +A D S+G  +SMA E
Sbjct: 118 KQEIGQSVPQGPPKQNGYSYGGSQLIYQSQQIQGLPNGSSIASISAFDGSFGAVNSMASE 177

Query: 165 NSMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFR--------------- 209
           +S+Q +M   N SNL RQ SSPAG FS   ++N  A +R  G F+               
Sbjct: 178 DSIQSKMGVRNCSNLFRQKSSPAGFFS---IENDLAALREVGSFKDNDVSNGQATASTSG 234

Query: 210 ----------------------ACNGT-NLEASTSASR-LIN-------RVNLSPGDPWD 238
                                 A NG  +LE +   SR L+N        +     + W+
Sbjct: 235 LHSSLTFSSRSSSCLKQMPPQIAENGNESLEENYDQSRNLVNDNGSSKCYIPSFTNEFWE 294

Query: 239 DASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF 298
            ++F+  K   +     S   +  E+Q  +   Q+  L HHLSLP +S +M+++E FL  
Sbjct: 295 SSAFNAPKTENEDEIMFSTS-NGLESQETDFSYQNHGLTHHLSLPSSSTKMSSIEMFLQI 353

Query: 299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
           QGSVP KIRAKRG ATHPRSIAER RRTRISER++KLQDLFP  +K T+TA+MLDLAVEH
Sbjct: 354 QGSVPYKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPRSEKPTSTADMLDLAVEH 413

Query: 359 IKDLQKQVKV 368
           IKDLQ+QV++
Sbjct: 414 IKDLQQQVQI 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.289	0.282	0.669	1.8e-52
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.859	0.883	0.372	2.5e-42
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.317	0.78	0.705	1.2e-40
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.880	0.897	0.356	2.4e-35
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.189	0.270	0.742	6.8e-30
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.493	0.694	0.38	1.1e-27
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.279	0.472	0.594	4e-26
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.184	0.129	0.550	1.9e-11
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.170	0.203	0.593	2e-11
TAIR|locus:2147760	297	LRL3 "AT5G58010" [Arabidopsis	0.170	0.212	0.578	2.1e-11

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 75/112 (66%), Positives = 93/112 (83%)

Query:   256 SFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHFQGSVPCKIRAKRGCATH 315
             S GLD Y+T++ +S ++   L HH+SLPK+ ++   +E+ L    S+PCKIRAKRGCATH
Sbjct:   259 SGGLDQYKTKDEDSASRRPPLAHHMSLPKSLSD---IEQLL--SDSIPCKIRAKRGCATH 313

Query:   316 PRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
             PRSIAERVRRT+ISERMRKLQDL PNMD QTNTA+MLDLAV++IKDLQ+QVK
Sbjct:   314 PRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVK 365

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 138/370 (37%), Positives = 196/370 (52%)

Query:    23 MDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYRCFRPSSPEIDNFL 82
             MDS+ H    N   + S L R+RSAPSS L + V+ +  G        F     + D  L
Sbjct:     1 MDSNNHLYDPNP--TGSGLLRFRSAPSSVLAAFVDDDKIG--------F-----DSDRLL 45

Query:    83 AKYMLPCNGSGDSGSHASQEFGVKAMKQEE--------PEPITEQNEYSNGSSQMVYQNL 134
             ++++     +GD GS   ++    ++            P P  E + +         Q+ 
Sbjct:    46 SRFVTSNGVNGDLGSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSK 105

Query:   135 PV-HSVGNDISVNVGNAMDNSYGVASSMALENSMQERMATGNGSNLTRQNSSPAGLFSNL 193
              + +SVG D  + + N   ++  V S++  ++S    M T    NL+ QN    G   NL
Sbjct:   106 GIMNSVGLDQFLGINN--HHTKPVESNLLRQSSSPAGMFT----NLSDQNGY--GSMRNL 157

Query:   194 G--VDNGFAGMRNGGCFRACN-----GTNLEASTSASRLINRVNLSPGDPWDD-ASF--- 242
                 ++  +   + G  R C+      ++L   +    +    N  P   W+D +SF   
Sbjct:   158 MNYEEDEESPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPETNF-PYSHWNDPSSFIDN 216

Query:   243 -SGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPK---TSAEMAAVEKFLHF 298
              S +KR  +    +  G      QNG SGN+   L HHLSLPK   T+++M +V+K+L  
Sbjct:   217 LSSLKREAEDDGKLFLG-----AQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQL 271

Query:   299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
             Q SVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQ+L PNMDKQTNT++MLDLAV++
Sbjct:   272 QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDY 331

Query:   359 IKDLQKQVKV 368
             IKDLQ+Q K+
Sbjct:   332 IKDLQRQYKI 341

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 91/129 (70%), Positives = 102/129 (79%)

Query:   239 DASFSGVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF 298
             D + SGVKR RDS+           +QNG  G     L H  SLPKTS+EMAA+EKFL F
Sbjct:    14 DTNISGVKRQRDSS---------EPSQNGGGGGG---LAHQFSLPKTSSEMAAIEKFLQF 61

Query:   299 QGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEH 358
             Q +VPCKIRAKRGCATHPRSIAERVRRTRISER+RKLQ+L PNMDKQTNTA+MLDLAV++
Sbjct:    62 QDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDY 121

Query:   359 IKDLQKQVK 367
             IKDLQKQVK
Sbjct:   122 IKDLQKQVK 130

GO:0005634 "nucleus" evidence=IC

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 127/356 (35%), Positives = 183/356 (51%)

Query:    25 SSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGG--NCEDYRCFRPSSPEIDNFL 82
             S++   Q++       L RY SAP SFL S+V+   GGG  N  D+  ++PSS   DNF+
Sbjct:     7 STSSSSQRSSLPGGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSS---DNFI 63

Query:    83 AKYMLPCNGSGDSGSHASQEFGVKAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVG-- 140
               +     G+ DS S  S           + +     N  +N S++ ++ +    S G  
Sbjct:    64 GNFF---TGAADSSSLRSDSTTCGVNNSSDGQKQLGNNN-NNNSNKDIFLD---RSYGGF 116

Query:   141 NDISV-NVGNAMD--NSYGVASSMALENSMQERMATGNGSNLTRQN-SSPAGLFSNLGVD 196
             N+IS  +  N +   NS G + S+A + S      T   S+    + + P   +S  G  
Sbjct:   117 NEISQQHKSNDIGGGNSSG-SYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGS 175

Query:   197 NGFAGMRNGGCFRACNGTNLEASTSASRLINRVNLSPGDPWDDASFSGVK---RARDSTC 253
             NG  G  +       + TN +   S +R IN VN +P       SFS         DS  
Sbjct:   176 NG--GRGHSRLKSQLSFTNHD---SLAR-INEVNETPVHDGSGHSFSAASFGAATTDSWD 229

Query:   254 NMSFGLDAYETQ-NGNSGNQSTRLVHHLSLPKTSAEMAAVEKFLHF-QGSVPCKIRAKRG 311
             + S  +    T+ +  S +  + L    SLP  ++ M  ++ F+   + SVPCKIRAKRG
Sbjct:   230 DGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTS-MNYMDNFMQLPEDSVPCKIRAKRG 288

Query:   312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
             CATHPRSIAER RRTRIS +++KLQDL PNMDKQT+ ++MLDLAV+HIK LQ Q++
Sbjct:   289 CATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 52/70 (74%), Positives = 65/70 (92%)

Query:   298 FQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVE 357
             F+ SVPC++RAKRGCATHPRSIAERVRRTRIS+R+R+LQ+L PNMDKQTNTA+ML+ AVE
Sbjct:   173 FEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVE 232

Query:   358 HIKDLQKQVK 367
             ++K LQ Q++
Sbjct:   233 YVKALQSQIQ 242

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 76/200 (38%), Positives = 109/200 (54%)

Query:   171 MATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRLINRVN 230
             + TGN ++L     S    F  + V+ G    + GG F   N T  +  + +   I    
Sbjct:    61 LLTGNSNDLPTSRGSFE--FP-IPVEQGL--YQQGG-FHRQNSTPADFLSGSDGFIQSFG 114

Query:   231 LSPGDPWDDASFS---GVKRARDSTCNMSFGLDAYETQNGNSGNQSTRLVHHLSLPKTSA 287
             +     +   +     G KR+R+      F    + +Q    G QS+  V     P   +
Sbjct:   115 IQANYDYLSGNIDVSPGSKRSREMEA--LFSSPEFTSQM--KGEQSSGQV-----PTGVS 165

Query:   288 EMAAVEKFLHFQGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTN 347
              M+ +      + SV  ++RAKRGCATHPRSIAERVRRTRIS+R+RKLQ+L PNMDKQTN
Sbjct:   166 SMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTN 225

Query:   348 TAEMLDLAVEHIKDLQKQVK 367
             TA+ML+ AVE++K LQ+Q++
Sbjct:   226 TADMLEEAVEYVKVLQRQIQ 245

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 63/106 (59%), Positives = 78/106 (73%)

Query:   265 QNGNSGNQS--TRLVHHLSLPKTSAEMAAVEKFLHFQ-GSVPCKIRAKRGCATHPRSIAE 321
             ++G  GN      L ++ S      EMA VEK+L  Q   VP ++RAKRGCATHPRSIAE
Sbjct:    90 KSGAHGNDDIIATLSNYESQLVAPREMAGVEKYLQMQHDQVPFRVRAKRGCATHPRSIAE 149

Query:   322 RVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
             R RRTRISE++RKLQ L PNMDKQT+T++MLDLAV+HIK LQ Q++
Sbjct:   150 RERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQLQ 195

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 180 (68.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query:   300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHI 359
             G+   ++RA+RG AT P SIAER+RR +IS+RM+ LQ+L PN +K TN A MLD  ++++
Sbjct:   308 GAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNK-TNKASMLDEIIDYV 366

Query:   360 KDLQKQVKV 368
             K LQ QVKV
Sbjct:   367 KFLQLQVKV 375

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 38/64 (59%), Positives = 50/64 (78%)

Query:   305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
             K+RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  ++++K LQ 
Sbjct:   129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query:   365 QVKV 368
             QVKV
Sbjct:   188 QVKV 191

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 37/64 (57%), Positives = 50/64 (78%)

Query:   305 KIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364
             ++RA+RG AT P SIAER+RR RI+ERM+ LQ+L PN +K T+ A MLD  +E+++ LQ 
Sbjct:    98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query:   365 QVKV 368
             QVKV
Sbjct:   157 QVKV 160

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C690	BH122_ARATH	No assigned EC number	0.3872	0.8590	0.8364	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-10
smart00353	53	smart00353, HLH, helix loop helix domain	3e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-07

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367
             ++ ER RR RI++   +L+ L P +   K+ + AE+L  AV++IK LQ+ ++
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 318 SIAERVRRTRISERMRKLQDLFP--NMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  ER RR +I+E   +L+ L P    +K+ + AE+L LA+E+IK LQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 318 SIAERVRRTRISERMRKLQDLFPN-MDKQTNTAEMLDLAVEHIKDLQ 363
           +  ER RR RI++   +L++L P   +K+ + AE+L LA+E+IK LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.35
smart00353	53	HLH helix loop helix domain.	99.33
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.26
KOG1318	411	consensus Helix loop helix transcription factor EB	99.09
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.67
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.44
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.2
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.05
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.71
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.37
KOG0561	373	consensus bHLH transcription factor [Transcription	97.18
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.16
PLN03217	93	transcription factor ATBS1; Provisional	97.06
KOG3910	632	consensus Helix loop helix transcription factor [T	93.8
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	91.46
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	90.21
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	88.76

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.35  E-value=1.1e-12  Score=96.28  Aligned_cols=53  Identities=36%  Similarity=0.602  Sum_probs=48.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ..|+..||+||++||+.|.+|+.+||..  .+++||++||+.||+||+.|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3589999999999999999999999998  2449999999999999999999864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.33  E-value=3.2e-12  Score=92.48  Aligned_cols=50  Identities=40%  Similarity=0.610  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          318 SIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       318 s~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      +..||+||++||+.|..|+.+||.   ..| ++|++||++||+||+.|+.++++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~~   53 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQK   53 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence            367999999999999999999996   445 89999999999999999999864

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.26  E-value=8e-12  Score=91.95  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=44.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCC----CCCCChHHHHHHHHHHHHHHH
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ  363 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~----~Kq~DKASILdeAIeYIK~LQ  363 (369)
                      .|+..||+||++||+.|.+|+.+||.+    ..+++|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            388999999999999999999999997    235999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.09  E-value=6e-11  Score=119.90  Aligned_cols=56  Identities=25%  Similarity=0.504  Sum_probs=49.1

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHh
Q 017583          312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       312 ~at~pHs~aERrRReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ++++.|+++|||||++||+||++|..|||.|.-   +++|..||..+++||+.||+.-+
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            344569999999999999999999999999842   37899999999999999998554

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.67  E-value=1.1e-08  Score=95.27  Aligned_cols=53  Identities=28%  Similarity=0.380  Sum_probs=47.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCCC------CCChHHHHHHHHHHHHHHHHHHhh
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~K------q~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .|..+||+||+.|+..+..|++|||.|..      ++.||.||.++|+||.+|+.++.+
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k  123 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK  123 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38899999999999999999999997664      378999999999999999987653

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.44  E-value=1.1e-07  Score=90.94  Aligned_cols=50  Identities=34%  Similarity=0.653  Sum_probs=44.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcCCCCC-------CCChHHHHHHHHHHHHHHHHHH
Q 017583          317 RSIAERVRRTRISERMRKLQDLFPNMDK-------QTNTAEMLDLAVEHIKDLQKQV  366 (369)
Q Consensus       317 Hs~aERrRReRINeri~aLr~LVP~~~K-------q~DKASILdeAIeYIK~LQ~QV  366 (369)
                      |-+.|||||.|||+-|.+|++|||.+.|       +++||.||+.||+|+|.||.+.
T Consensus        36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999995443       3899999999999999999754

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.20  E-value=1.5e-06  Score=94.55  Aligned_cols=52  Identities=23%  Similarity=0.500  Sum_probs=48.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhcCCCC---CCCChHHHHHHHHHHHHHHHHH
Q 017583          314 THPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQKQ  365 (369)
Q Consensus       314 t~pHs~aERrRReRINeri~aLr~LVP~~~---Kq~DKASILdeAIeYIK~LQ~Q  365 (369)
                      ..+|+.+|||||+++|.-|.+|.+|||.+.   .|+||-+||.+||++||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            456899999999999999999999999988   5699999999999999999874

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.05  E-value=2.7e-06  Score=93.35  Aligned_cols=58  Identities=28%  Similarity=0.447  Sum_probs=52.3

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          311 GCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       311 g~at~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      +.++.+|+++|||-|.-||+||.+|+++||+..-++.|..+|..||+||++|+...++
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~  331 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQK  331 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccc
Confidence            3557789999999999999999999999999876699999999999999999986544

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.71  E-value=7.6e-05  Score=71.30  Aligned_cols=54  Identities=28%  Similarity=0.484  Sum_probs=45.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCCCCCCC--ChHHHHHHHHHHHHHHHHHHhh
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQT--NTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~~~Kq~--DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      ..|+.-||+||..|.+.+..|+++||.....+  +.++||+.|++||+.|+.+..+
T Consensus        61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~  116 (232)
T KOG2483|consen   61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT  116 (232)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence            34788999999999999999999999755422  2699999999999999987653

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.37  E-value=0.00038  Score=67.76  Aligned_cols=51  Identities=24%  Similarity=0.345  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhh-hcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          318 SIAERVRRTRISERMRKLQD-LFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       318 s~aERrRReRINeri~aLr~-LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .+-||||=.|+||.|.+|+. -+++....+-|+.||..||+||..||.=+++
T Consensus       123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~  174 (284)
T KOG3960|consen  123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQE  174 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999965 5778777799999999999999999985544

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.18  E-value=0.00025  Score=70.64  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcCC--CCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          318 SIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       318 s~aERrRReRINeri~aLr~LVP~--~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      +..||||=.-||..|..||.|+|.  +.| +.||.||+.+.+||..|..+..+
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~  116 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTE  116 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhcccc
Confidence            456999999999999999999995  445 99999999999999999876544

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.16  E-value=0.00041  Score=64.73  Aligned_cols=51  Identities=29%  Similarity=0.414  Sum_probs=45.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcCC--C-CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583          317 RSIAERVRRTRISERMRKLQDLFPN--M-DKQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       317 Hs~aERrRReRINeri~aLr~LVP~--~-~Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ++..||.|=+-+|..+..||.+||.  . +|++.|..+|..||.||++|++-++
T Consensus       113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~  166 (228)
T KOG4029|consen  113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA  166 (228)
T ss_pred             hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence            4666999999999999999999994  3 6679999999999999999998554

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.06  E-value=0.00098  Score=55.81  Aligned_cols=47  Identities=30%  Similarity=0.535  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHhhhcCCC------CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          322 RVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       322 RrRReRINeri~aLr~LVP~~------~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      |---+.|+|-+.+||+|+|..      +| ...+-||+||+.||+.|+.+|..|
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdL   68 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDL   68 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344568999999999999953      34 688899999999999999999764

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=93.80  E-value=0.046  Score=57.87  Aligned_cols=52  Identities=27%  Similarity=0.383  Sum_probs=44.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcC---CCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          317 RSIAERVRRTRISERMRKLQDLFP---NMDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       317 Hs~aERrRReRINeri~aLr~LVP---~~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .+.-||.|=.-|||.||+|.+++=   +.+|.-.|--||..||.-|-.|++||++
T Consensus       530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            456699999999999999999875   4555457999999999999999999986

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=91.46  E-value=0.14  Score=55.96  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHH
Q 017583          319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD  361 (369)
Q Consensus       319 ~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~  361 (369)
                      -|.|-||.|=|+-|.+|..++|-   +.-++|||+|+..||-|+|-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            36899999999999999999993   33369999999999999974

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=90.21  E-value=0.15  Score=47.07  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=42.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcCC--CCCCCChHHHHHHHHHHHHHHHH
Q 017583          317 RSIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQK  364 (369)
Q Consensus       317 Hs~aERrRReRINeri~aLr~LVP~--~~Kq~DKASILdeAIeYIK~LQ~  364 (369)
                      |++-||+|-..+|+.|.+||.+||.  .+| +.|---|..|-.||-+|-.
T Consensus        82 anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   82 ANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence            6888999999999999999999994  667 8888999999999998843

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=88.76  E-value=0.39  Score=51.77  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcC----CCCCCCChHHHHHHHHHHHHH
Q 017583          321 ERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKD  361 (369)
Q Consensus       321 ERrRReRINeri~aLr~LVP----~~~Kq~DKASILdeAIeYIK~  361 (369)
                      -+|-|+|+|..+..|..|+|    .+.| +||-+||..+|-|++-
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence            57789999999999999999    4556 9999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-11
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	4e-06
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	1e-05
1a0a_A	63	BHLH, protein (phosphate system positive regulator	1e-05
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	1e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 12/50 (24%), Positives = 30/50 (60%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  E+  R+ I++++ +L+DL    + + N + +L  A+++I+ LQ   +
Sbjct: 11  NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ 60

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNT-----AEMLDLAVEHIKD 361
             +R  A H  +  ER RR +I+  + +L  + P+   ++         +L  A ++I++
Sbjct: 3   EKRR--AQH--NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 362 LQKQVK 367
           L++   
Sbjct: 59  LRQSNH 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 63/410 (15%), Positives = 109/410 (26%), Gaps = 152/410 (37%)

Query: 10  KYPEGDLRKNQEFMDSSAHYDQQNDQLSDSSLTRYRSAPSSFLESLVNGNSGGGNCEDYR 69
           K+ E  LR N +F+ S    +Q+   +        R       + L N N        Y 
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQ---VFAKYN 130

Query: 70  CFRPSS-PEIDNFL-----AKY-----MLPCNGSG----------DSGSHASQEFGV--- 105
             R     ++   L     AK      +L   GSG                  +F +   
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 106 KAMKQEEPEPITEQNEYSNGSSQMVYQNLPVHSVGNDISVNVGNAMDNSYGVASSMALEN 165
                  PE + E             Q L        I  N  +  D+S  +   +   +
Sbjct: 188 NLKNCNSPETVLEM-----------LQKLLYQ-----IDPNWTSRSDHSSNIKLRI---H 228

Query: 166 SMQERMATGNGSNLTRQNSSPAGLFSNLGVDNGFAGMRNGGCFRACNGTNLEASTSASRL 225
           S+Q  +       L +       L   L + N                            
Sbjct: 229 SIQAEL-----RRLLKSKPYENCL---LVLLN---------------------------- 252

Query: 226 INRVNLSPGDPWDDASFSGVKRARDSTCNMSFGL----DAYETQNGNSGNQSTRLVHHLS 281
              V     +     +F       + +C +   L        T   ++   +   + H S
Sbjct: 253 ---VQ----NAKAWNAF-------NLSCKI---LLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 282 LPKTSAEMAAV-EKFLHFQGSVPCKIRA--KRGCATHPRS---IAERVR--RTRISERMR 333
           +  T  E+ ++  K+L       C+ +   +    T+PR    IAE +R       +  +
Sbjct: 296 MTLTPDEVKSLLLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWK 348

Query: 334 KLQDLFPNMDKQTNTAEM--------------LDLAVEHIKDLQKQVKVT 369
            +     N DK T   E                 L+V           + 
Sbjct: 349 HV-----NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIP 388

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TNTAEMLDLAVEHIKDLQKQVK 367
           A H  +  ER RR  I +    L+D  P++  +  + A++LD A E+I+ ++++  
Sbjct: 4   AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 57

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TNTAEMLDLAVEHIKDLQKQ 365
             KR  A H  +  ER RR  I +    L+D  P++  +  + A++LD A E+I+ ++++
Sbjct: 10  ADKR--AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65

Query: 366 VK 367
             
Sbjct: 66  NH 67

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 319 IAERVRRTRISERMRKLQDLFPNMDKQTNT------AEMLDLAVEHIKDLQKQVK 367
            AE+ RR R++  + +L  L P   KQ N       A  ++ A  +I+ LQ+   
Sbjct: 8   HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 307 RAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQT--NTAEMLDLAVEHIKDLQK 364
             KR   TH  ++ ER RR  +      L+D  P ++         +L  A  +I  +Q 
Sbjct: 4   NVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 365 QVK 367
           + +
Sbjct: 60  EEQ 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.64
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.59
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.53
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.52
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.5
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.47
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.37
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.36
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.34
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.34
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.16
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.01
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.98
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.9
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.87
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.56
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.43
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.9

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.64  E-value=1.9e-16  Score=133.96  Aligned_cols=70  Identities=24%  Similarity=0.398  Sum_probs=48.3

Q ss_pred             CCCCccccccCCCCCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       300 dsvp~K~RakRg~at~pHs~aERrRReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      ..++.+..+|+++++.+|+++||+||++||++|.+|++|||++.+   +++|++||++||+||++||.+++.|
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l   86 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   86 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788888889999999999999999999999999998853   4799999999999999999998764

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.59  E-value=3.5e-16  Score=124.46  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=51.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       314 t~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      ..+|+.+||+||++||++|.+|+.|||+++.++||++||++||+||++||.+++.|
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L   62 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34599999999999999999999999998555999999999999999999999865

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.53  E-value=5.1e-15  Score=116.34  Aligned_cols=54  Identities=13%  Similarity=0.350  Sum_probs=49.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .+|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~   63 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAW   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence            458999999999999999999999998664499999999999999999998753

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.52  E-value=2.1e-15  Score=115.35  Aligned_cols=54  Identities=26%  Similarity=0.367  Sum_probs=48.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhcCCCCC------CCChHHHHHHHHHHHHHHHHHHh
Q 017583          314 THPRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       314 t~pHs~aERrRReRINeri~aLr~LVP~~~K------q~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ..+|.++||+||++||+.|.+|+.|||.+.+      +++||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            3569999999999999999999999997633      36799999999999999999875

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.50  E-value=5.8e-15  Score=111.97  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=49.5

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhcCCCCC-----CCChHHHHHHHHHHHHHHHHHHh
Q 017583          313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDK-----QTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       313 at~pHs~aERrRReRINeri~aLr~LVP~~~K-----q~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ....|+.+||+||++||+.|.+|+.|||.+..     +++|++||++||+||+.||.+++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            34569999999999999999999999998872     38999999999999999998764

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.47  E-value=5.3e-15  Score=116.45  Aligned_cols=51  Identities=29%  Similarity=0.479  Sum_probs=46.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhcCCC----CCCCChHHHHHHHHHHHHHHHH
Q 017583          313 ATHPRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQK  364 (369)
Q Consensus       313 at~pHs~aERrRReRINeri~aLr~LVP~~----~Kq~DKASILdeAIeYIK~LQ~  364 (369)
                      ++..|+.+||+||++||+.|.+|+.|||.|    .| +|||+||+.||+|||.|+.
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence            345699999999999999999999999987    45 9999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.37  E-value=4.7e-13  Score=105.45  Aligned_cols=53  Identities=28%  Similarity=0.485  Sum_probs=49.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+..||+||.+||+.|.+|+.|||.+  .| ++|++||..||+||+.|+.++++|
T Consensus        15 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L   69 (80)
T 1hlo_A           15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999986  46 999999999999999999998765

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.36  E-value=5e-13  Score=105.62  Aligned_cols=53  Identities=28%  Similarity=0.485  Sum_probs=48.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+..||+||++||+.|.+|+.+||.+  .| ++|++||.+||+||+.|+.++++|
T Consensus         5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l   59 (83)
T 1nkp_B            5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999985  56 899999999999999999887653

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.34  E-value=8.2e-13  Score=106.64  Aligned_cols=53  Identities=21%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~--Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .|+..||+||++||+.|.+|+++||.+.  ++++|++||.+||+||+.|+.+.+.
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~   63 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999863  2389999999999999999998764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.34  E-value=9.1e-13  Score=104.32  Aligned_cols=55  Identities=31%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCC---CCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~---~~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      ..|+..||+||+.||+.|.+|+.+||.   .+|..+|+.||..||+||+.||++++++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999999995   4553479999999999999999999975

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.16  E-value=3.5e-11  Score=95.79  Aligned_cols=53  Identities=26%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCC---CCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNM---DKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~---~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+..||+||..|++.|.+|+++||.+   .| ++|++||.+||+||+.|+.+.+.|
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l   59 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKA   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999965   45 899999999999999999987653

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.01  E-value=2.6e-10  Score=108.30  Aligned_cols=52  Identities=13%  Similarity=0.394  Sum_probs=42.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017583          314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ  365 (369)
Q Consensus       314 t~pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~Q  365 (369)
                      ..+|+.+||+||+|||+.|.+|+.|||....++||++||..||+|||.|+..
T Consensus        13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            3458999999999999999999999995444499999999999999999864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.98  E-value=1.6e-10  Score=89.81  Aligned_cols=52  Identities=21%  Similarity=0.344  Sum_probs=46.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCC-CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNM-DKQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~-~Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      .|+.-||+|+..||+.|..|+++||.. +++++|+.||..||+||+.|+..++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            378899999999999999999999964 3459999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.90  E-value=4.3e-10  Score=108.34  Aligned_cols=51  Identities=29%  Similarity=0.458  Sum_probs=46.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhcC----CCCCCCChHHHHHHHHHHHHHHHH
Q 017583          313 ATHPRSIAERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKDLQK  364 (369)
Q Consensus       313 at~pHs~aERrRReRINeri~aLr~LVP----~~~Kq~DKASILdeAIeYIK~LQ~  364 (369)
                      ++.+|+.+||+||+|||+.|.+|+.|||    ...| +||++||..||.|||.|+.
T Consensus        13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHC
T ss_pred             hcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhc
Confidence            3456999999999999999999999999    4556 9999999999999999974

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.87  E-value=3.3e-09  Score=80.50  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=46.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583          317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       317 Hs~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ++.-||+|+..||+.|..||.+||..  +++++|..+|..||+||+.|++.++
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999964  4569999999999999999999775

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.56  E-value=6.3e-08  Score=78.38  Aligned_cols=44  Identities=27%  Similarity=0.521  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCC---CCChHHHHHHHHHHHHHHHHHHhh
Q 017583          325 RTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       325 ReRINeri~aLr~LVP~~~K---q~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      |..||++|++|..|||.+..   +.+|++||..||+||+.||.+++.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r   50 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR   50 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999997532   379999999999999999986653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.43  E-value=1.1e-07  Score=74.47  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHH
Q 017583          318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQK  364 (369)
Q Consensus       318 s~aERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~  364 (369)
                      +.-||+|...||+.|..||++||..  +++++|..+|..||+||+.||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            4459999999999999999999965  4469999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.90  E-value=2.3e-05  Score=65.03  Aligned_cols=48  Identities=23%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          321 ERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       321 ERrRReRINeri~aLr~LVP~~--~Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      ||.|=..||+-|..||.+||..  +|++.|..+|..||+||+.|+.-+.+
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5777788999999999999964  55699999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-12
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-10
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	8e-10
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-09
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	4e-09
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	6e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	6e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (142), Expect = 4e-12
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           R+ I++++ +L+DL    D + + + +L  A+++IK LQ+   
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNH 43

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 309 KRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
            RG      +  E+  R+ I++++ +L+DL    + + N + +L  A+++I+ LQ   +
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ 60

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNMDKQTN------TAEMLDLAVEHIKDLQKQVK 367
             AE+ RR R++  + +L  L P   KQ N       A  ++ A  +I+ LQ+   
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367
            ++ ER RR  +      L+D  P +  +++     +L  A  +I  +Q + +
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 318 SIAERVRRTRISERMRKLQDLFP-NMDKQTNTAEMLDLAVEHIKDLQKQVK 367
           ++ ER R ++++E    L+     N +++    E+L  A+ +I+ LQ  ++
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  E+ RR  +   + KL+ L P      +  T  +L  A  HIK L+   +
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 317 RSIAERVRRTRISERMRKLQDLF-PNMDKQTNTAEMLDLAVEHIKDLQKQVK 367
            +  ER RR  I +    L+D       ++ + A++LD A E+I+ ++++  
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 57

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 318 SIAERVRRTRISERMRKLQDLFPNM-----DKQTNTAEMLDLAVEHIKDLQKQVK 367
           +  ER RR +I+  + +L  + P+          +   +L  A ++I++L++   
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.46
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.45
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.32
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.31

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-14  Score=110.93  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+.+||+||++||+.|.+|++|||++..+++|++||.+||+||+.|+.+++.|
T Consensus         9 ~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L   62 (80)
T d1am9a_           9 AHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999998766999999999999999999998764

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.7e-14  Score=107.54  Aligned_cols=53  Identities=25%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCCC------CCCCChHHHHHHHHHHHHHHHHHHh
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~~------~Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ..|+++||+||++||+.|.+|+.|||.+      +.+++|++||+.||+||+.||++|.
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhhc
Confidence            3489999999999999999999999942      2348999999999999999998874

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=9.7e-15  Score=110.83  Aligned_cols=53  Identities=21%  Similarity=0.301  Sum_probs=48.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCC-CCCChHHHHHHHHHHHHHHHHHHhh
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKV  368 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~-Kq~DKASILdeAIeYIK~LQ~QVk~  368 (369)
                      .|++.||+||++||+.|.+|+.|||.+. ++++|++||+.||+||++||++|++
T Consensus        15 ~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_          15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            4899999999999999999999999864 3489999999999999999998864

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-13  Score=104.18  Aligned_cols=54  Identities=26%  Similarity=0.333  Sum_probs=48.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~--Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+.+||+||++||+.|.+|++|||.+.  .+++|++||.+||+||+.|+.+++.|
T Consensus         4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (79)
T d1nlwa_           4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999753  23899999999999999999988753

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-13  Score=102.57  Aligned_cols=45  Identities=27%  Similarity=0.385  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       325 ReRINeri~aLr~LVP~~~Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||+++++|
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L   45 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL   45 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999998755999999999999999999999875

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.1e-13  Score=103.53  Aligned_cols=54  Identities=26%  Similarity=0.461  Sum_probs=48.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCC-CCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~-Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+.+||+||++||+.|.+|++|||.+. ++++|++||..||+||+.|+.++..|
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   59 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999642 34899999999999999999987653

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-13  Score=101.96  Aligned_cols=53  Identities=21%  Similarity=0.381  Sum_probs=47.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcCCCC-----CCCChHHHHHHHHHHHHHHHHHHh
Q 017583          315 HPRSIAERVRRTRISERMRKLQDLFPNMD-----KQTNTAEMLDLAVEHIKDLQKQVK  367 (369)
Q Consensus       315 ~pHs~aERrRReRINeri~aLr~LVP~~~-----Kq~DKASILdeAIeYIK~LQ~QVk  367 (369)
                      ..|+.+||+||++||+.|.+|+.|||.+.     .+++|++||..||+||+.||++.+
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~~   64 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            45999999999999999999999999653     148999999999999999998653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.6e-13  Score=103.90  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHHHHHHHhhC
Q 017583          316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKVT  369 (369)
Q Consensus       316 pHs~aERrRReRINeri~aLr~LVP~~~--Kq~DKASILdeAIeYIK~LQ~QVk~L  369 (369)
                      .|+.+||+||++||+.|..|+++||++.  ++++|++||..||+||+.|++++++|
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l   64 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999753  23899999999999999999988754