Citrus Sinensis ID: 017633
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | 2.2.26 [Sep-21-2011] | |||||||
| P31593 | 478 | Glutamate-1-semialdehyde | N/A | no | 0.967 | 0.744 | 0.876 | 0.0 | |
| Q42522 | 472 | Glutamate-1-semialdehyde | yes | no | 0.967 | 0.754 | 0.865 | 0.0 | |
| Q40147 | 481 | Glutamate-1-semialdehyde | N/A | no | 0.967 | 0.740 | 0.862 | 0.0 | |
| P45621 | 466 | Glutamate-1-semialdehyde | yes | no | 0.967 | 0.763 | 0.851 | 0.0 | |
| Q85WB7 | 473 | Glutamate-1-semialdehyde | N/A | no | 0.967 | 0.752 | 0.848 | 0.0 | |
| P42799 | 474 | Glutamate-1-semialdehyde | no | no | 0.967 | 0.751 | 0.839 | 1e-178 | |
| Q6YZE2 | 478 | Glutamate-1-semialdehyde | yes | no | 0.964 | 0.742 | 0.825 | 1e-175 | |
| P18492 | 469 | Glutamate-1-semialdehyde | N/A | no | 0.967 | 0.759 | 0.814 | 1e-168 | |
| B1X023 | 433 | Glutamate-1-semialdehyde | yes | no | 0.975 | 0.829 | 0.727 | 1e-156 | |
| Q31QJ2 | 433 | Glutamate-1-semialdehyde | yes | no | 0.975 | 0.829 | 0.727 | 1e-156 |
| >sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/356 (87%), Positives = 333/356 (93%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 123 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 182
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+
Sbjct: 183 TGRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVES 242
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE +KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 243 LFEEHKGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGG 302
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 303 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 362
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF D
Sbjct: 363 HTLKRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSD 422
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 423 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
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Nicotiana tabacum (taxid: 4097) EC: 5EC: .EC: 4EC: .EC: 3EC: .EC: 8 |
| >sp|Q42522|GSA2_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/356 (86%), Positives = 335/356 (94%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 117 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 176
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E
Sbjct: 177 TGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEK 236
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGG
Sbjct: 237 LFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGG 296
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 297 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 356
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F D
Sbjct: 357 HTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSD 416
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 417 AKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q40147|GSA_SOLLC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/356 (86%), Positives = 332/356 (93%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 126 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 185
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
T R +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+
Sbjct: 186 TCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVES 245
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE +KGEIAA+ILEPVVGN+GFI PK +FL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 246 LFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGG 305
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 306 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 365
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL+ GTYE+L+KIT ELTQGI+DAGKK GHA+CGG I GMFGFFF +GP+YNF D
Sbjct: 366 HTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSD 425
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ T+ AAEKVL+QI
Sbjct: 426 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI 481
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Solanum lycopersicum (taxid: 4081) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/356 (85%), Positives = 330/356 (92%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
QVLAALGETMKKGTSFGAPCLLEN LAE+VI AVPSIEMVRFVNSGTEACMG LRLARA+
Sbjct: 111 QVLAALGETMKKGTSFGAPCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAY 170
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGRE+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAP+ND A+E
Sbjct: 171 TGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTEAIEK 230
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAA+ LEPVVGN+GFI PKPDF + +R+ITKEN LL+FDEVMTGFRL+YGG
Sbjct: 231 LFEANKGEIAAVFLEPVVGNAGFIVPKPDFHSFLRKITKENNTLLVFDEVMTGFRLSYGG 290
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD+TTLGKIIGGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 291 AQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGI 350
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TL+R+KEPGTYEYL+KITGEL +GII+AGK+AGHAICGG+I GMFGFFFTEGPVYNF D
Sbjct: 351 ETLQRIKEPGTYEYLDKITGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFAD 410
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KFARF+ GML EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 411 AKKSDTAKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 466
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Glycine max (taxid: 3847) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q85WB7|GSA_BRANA Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/356 (84%), Positives = 333/356 (93%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 118 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 177
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
T +E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+
Sbjct: 178 TNKEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAK 237
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGG
Sbjct: 238 LFEAHKGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGG 297
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 298 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 357
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D
Sbjct: 358 HTLKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFAD 417
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+VL +I
Sbjct: 418 AKKSDTEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGRI 473
|
Brassica napus (taxid: 3708) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P42799|GSA1_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/356 (83%), Positives = 329/356 (92%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 119 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
T +E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E
Sbjct: 179 TNKEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEK 238
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LF +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGG
Sbjct: 239 LFAAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGG 298
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 299 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D
Sbjct: 359 HTLKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFAD 418
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+KKS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 419 SKKSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q6YZE2|GSA_ORYSJ Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/355 (82%), Positives = 327/355 (92%)
Query: 14 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73
V AAL ET+KKGTSFGAPC+LENVLAEMVISAVPSIEMVRFVNSGTEACMG LRL RAFT
Sbjct: 124 VNAALIETLKKGTSFGAPCVLENVLAEMVISAVPSIEMVRFVNSGTEACMGALRLVRAFT 183
Query: 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 133
GRE+I+KFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPKGAT ETLTAP+NDV A++ L
Sbjct: 184 GREKILKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKGATSETLTAPYNDVEAVKKL 243
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 193
FE NKG+IAA+ LEPVVGN+GFI P+P FLNA+R +TK++GALL+FDEVMTGFRLAYGGA
Sbjct: 244 FEENKGQIAAVFLEPVVGNAGFIPPQPGFLNALRDLTKQDGALLVFDEVMTGFRLAYGGA 303
Query: 194 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 253
QEYFG+TPD++TLGKIIGGGLPVGAYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIH
Sbjct: 304 QEYFGITPDVSTLGKIIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 363
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
TLKRL EPGTY+YL+KITG+L +G++DAG K GH +CGG+I GMFGFFFT GPV+NF DA
Sbjct: 364 TLKRLMEPGTYDYLDKITGDLVRGVLDAGAKTGHEMCGGHIRGMFGFFFTAGPVHNFGDA 423
Query: 314 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
KKS+T KF RFYRGMLEEGVY APSQFEAGFTSLAH+S DI+ T+ AA KVLR+I
Sbjct: 424 KKSDTAKFGRFYRGMLEEGVYLAPSQFEAGFTSLAHTSQDIEKTVEAAAKVLRRI 478
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P18492|GSA_HORVU Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/356 (81%), Positives = 324/356 (91%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V AAL ET+KKGTSFGAPC LENVLA+MVISAVPSIEMVRFVNSGTEACMG LRL RAF
Sbjct: 114 KVNAALIETLKKGTSFGAPCALENVLAQMVISAVPSIEMVRFVNSGTEACMGALRLVRAF 173
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGRE+I+KFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPKGAT TLTAP+ND A++
Sbjct: 174 TGREKILKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKGATVGTLTAPYNDADAVKK 233
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE+NKGEIAA+ LEPVVGN+GFI P+P FLNA+R +TK++GALL+FDEVMTGFRLAYGG
Sbjct: 234 LFEDNKGEIAAVFLEPVVGNAGFIPPQPAFLNALREVTKQDGALLVFDEVMTGFRLAYGG 293
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD+TTLGKIIGGGLPVGAYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 294 AQEYFGITPDVTTLGKIIGGGLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 353
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL EPGTYEYL+K+TGEL +GI+D G K GH +CGG+I GMFGFFF GPV+NF+D
Sbjct: 354 HTLKRLMEPGTYEYLDKVTGELVRGILDVGAKTGHEMCGGHIRGMFGFFFAGGPVHNFDD 413
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RF+RGML EGVY APSQFEAGFTSLAH++ DI+ T+ AAEKVLR I
Sbjct: 414 AKKSDTAKFGRFHRGMLGEGVYLAPSQFEAGFTSLAHTTQDIEKTVEAAEKVLRWI 469
|
Hordeum vulgare (taxid: 4513) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B1X023|GSA_CYAA5 Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/359 (72%), Positives = 306/359 (85%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+AAL + + +GTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL
Sbjct: 75 AHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEACMSVLRLM 134
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RAFTGR++IIKF+GCYHGHAD FLV+AGSGVATLGLPDSPGVPK T TLTAP+ND+ A
Sbjct: 135 RAFTGRDKIIKFQGCYHGHADMFLVQAGSGVATLGLPDSPGVPKTTTANTLTAPYNDLEA 194
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N EIA +ILEPVVGNSGF+ P FL +R +T E GALL+FDEVMTGFRL+
Sbjct: 195 VKALFAENPDEIAGVILEPVVGNSGFVVPDGGFLQGLRELTNEYGALLVFDEVMTGFRLS 254
Query: 190 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGGAQE FGVTPDLTTLGK+IGGGLPVGAYGGR+DIM MVAPAGPMYQAGTLSGNPLAMT
Sbjct: 255 YGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRKDIMSMVAPAGPMYQAGTLSGNPLAMT 314
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTY L +IT +L++G++ K+AGH +CGGYI MFG FFTEGPV N
Sbjct: 315 AGIKTLELLQKPGTYNQLEQITQQLSEGLLKIAKEAGHQVCGGYIGAMFGLFFTEGPVRN 374
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
++DAKKS+ KF RF+RGMLE+GVY APSQFEAGFTSLAH+S+DI+ T+ AA+ VL +
Sbjct: 375 YDDAKKSDLAKFGRFHRGMLEKGVYLAPSQFEAGFTSLAHTSEDIEKTLAAAKDVLSNL 433
|
Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q31QJ2|GSA_SYNE7 Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus elongatus (strain PCC 7942) GN=hemL PE=1 SV=3 | Back alignment and function description |
|---|
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/359 (72%), Positives = 306/359 (85%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL
Sbjct: 75 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVIDAVPSIEMVRFVNSGTEACMAVLRLM 134
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK T TLTAP+ND+ A
Sbjct: 135 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKSTTANTLTAPYNDLEA 194
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+A
Sbjct: 195 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA 254
Query: 190 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 255 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 314
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 315 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 374
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 375 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 433
|
Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | ||||||
| 449438260 | 471 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.967 | 0.755 | 0.898 | 0.0 | |
| 255571784 | 473 | glutamate-1-semialdehyde 2,1-aminomutase | 0.967 | 0.752 | 0.898 | 0.0 | |
| 224134068 | 479 | predicted protein [Populus trichocarpa] | 0.967 | 0.743 | 0.887 | 0.0 | |
| 307136451 | 471 | glutamate-1-semialdehyde 21-aminomutase | 0.967 | 0.755 | 0.884 | 0.0 | |
| 225456404 | 473 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.967 | 0.752 | 0.879 | 0.0 | |
| 19875 | 478 | glutamate-1-semialdehyde 2,1-aminomutase | 0.967 | 0.744 | 0.879 | 0.0 | |
| 399785 | 478 | RecName: Full=Glutamate-1-semialdehyde 2 | 0.967 | 0.744 | 0.876 | 0.0 | |
| 15229018 | 472 | glutamate-1-semialdehyde 2,1-aminomutase | 0.967 | 0.754 | 0.865 | 0.0 | |
| 297816078 | 476 | glutamate-1-semialdehyde 2,1-aminomutase | 0.967 | 0.747 | 0.867 | 0.0 | |
| 357467549 | 468 | Glutamate-1-semialdehyde 2,1-aminomutase | 0.967 | 0.760 | 0.856 | 0.0 |
| >gi|449438260|ref|XP_004136907.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] gi|449527822|ref|XP_004170908.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/356 (89%), Positives = 344/356 (96%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 116 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 175
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAPFND+SA+E+
Sbjct: 176 TGKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPFNDISAVES 235
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+F NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGG
Sbjct: 236 IFNANKGEIAAIILEPVVGNSGFIAPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGG 295
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 296 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 355
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAICGGYI+GMFGFFFT+GPVYNFED
Sbjct: 356 HTLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAICGGYINGMFGFFFTDGPVYNFED 415
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYRGMLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 416 AKKSDTAKFGRFYRGMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571784|ref|XP_002526835.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] gi|223533839|gb|EEF35570.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/356 (89%), Positives = 342/356 (96%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
QVLAAL ETMKKGTSFGAPCLLENVLAEMVI AVP IEMVRFVNSGTEACMGVLRLARAF
Sbjct: 118 QVLAALAETMKKGTSFGAPCLLENVLAEMVIKAVPCIEMVRFVNSGTEACMGVLRLARAF 177
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAPFND++A+E
Sbjct: 178 TGQEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPFNDIAAVEK 237
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAAIILEPVVGNSGFI PKPDFLNAIRRITKEN ALLIFDEVMTGFRL+YGG
Sbjct: 238 LFEANKGEIAAIILEPVVGNSGFIPPKPDFLNAIRRITKENNALLIFDEVMTGFRLSYGG 297
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDL+TLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 298 AQEYFGITPDLSTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 357
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL+EPG+YEYL+KITGEL QGI+DAGKKAGHA+CGG+ISGMFGFFFTEGPVYNF D
Sbjct: 358 HTLKRLQEPGSYEYLDKITGELIQGILDAGKKAGHAMCGGHISGMFGFFFTEGPVYNFSD 417
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KFARFY+GMLEEGVYFAPSQFEAGFTSLAH+++DIQ TI AAEKV RQI
Sbjct: 418 AKKSDTAKFARFYQGMLEEGVYFAPSQFEAGFTSLAHTTEDIQRTIKAAEKVFRQI 473
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134068|ref|XP_002321728.1| predicted protein [Populus trichocarpa] gi|222868724|gb|EEF05855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/356 (88%), Positives = 339/356 (95%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRLARA+
Sbjct: 124 EVLAALSETMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGVLRLARAY 183
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGRE+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAP+ND++A+EN
Sbjct: 184 TGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDIAAVEN 243
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFENNKGEI IILEPVVGN+GFI PKP+F+NAIRRIT+EN ALLIFDEVMTGFRL+YGG
Sbjct: 244 LFENNKGEICGIILEPVVGNAGFIPPKPEFINAIRRITEENNALLIFDEVMTGFRLSYGG 303
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 304 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 363
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL++PG+YEYL+KIT EL QGIIDAGKK GHAICGGYI GMFGFFFTEGPVYNF D
Sbjct: 364 HTLKRLQKPGSYEYLDKITSELVQGIIDAGKKTGHAICGGYIRGMFGFFFTEGPVYNFAD 423
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KFARFY+GML EGVYFAPSQFEAGFTSLAH+++DIQ TI AAE VLRQI
Sbjct: 424 AKKSDTAKFARFYQGMLREGVYFAPSQFEAGFTSLAHTAEDIQKTIAAAENVLRQI 479
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136451|gb|ADN34256.1| glutamate-1-semialdehyde 21-aminomutase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/356 (88%), Positives = 340/356 (95%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 116 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 175
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND+SA+E+
Sbjct: 176 TGKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPFNDLSAVES 235
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+F NKGEIAAIILEPVVGNSGFI PKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGG
Sbjct: 236 IFNANKGEIAAIILEPVVGNSGFIPPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGG 295
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 296 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 355
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAI GGYI+GMFGFFFT+GPV+NFED
Sbjct: 356 HTLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAISGGYINGMFGFFFTDGPVHNFED 415
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYR MLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 416 AKKSDTAKFGRFYRAMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456404|ref|XP_002284200.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Vitis vinifera] gi|147861754|emb|CAN83169.1| hypothetical protein VITISV_021914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/356 (87%), Positives = 341/356 (95%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLEN+LAEMVISAVPSIEMVRFVNSGTEACMG+LRLARAF
Sbjct: 118 EVLAALAETMKKGTSFGAPCLLENILAEMVISAVPSIEMVRFVNSGTEACMGMLRLARAF 177
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+E+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP+ AT+ETLT+PFND+S +E
Sbjct: 178 TGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPRAATFETLTSPFNDLSTVEK 237
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAA+ILEPVVGNSGFIAPKPDFLNA++ ITKENGALL+FDEVMTGFR++YGG
Sbjct: 238 LFEANKGEIAAVILEPVVGNSGFIAPKPDFLNALQEITKENGALLVFDEVMTGFRISYGG 297
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD+TTLGKIIGGGLPVGAYGGRR+IME+VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 298 AQEYFGITPDITTLGKIIGGGLPVGAYGGRREIMELVAPAGPMYQAGTLSGNPLAMTAGI 357
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TLKRLKEPG+YEYL+KITGEL QGI+DAGKKAGHAICGGYISGMFGFFFTEGPVYNF D
Sbjct: 358 QTLKRLKEPGSYEYLDKITGELIQGILDAGKKAGHAICGGYISGMFGFFFTEGPVYNFGD 417
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AK S+T KFARF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAEKV R+I
Sbjct: 418 AKNSDTAKFARFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQQTIAAAEKVFRKI 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19875|emb|CAA46787.1| glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/356 (87%), Positives = 336/356 (94%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 123 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 182
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+
Sbjct: 183 TGRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATTDTLTAPYNDISAVES 242
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LF+ +KGE+AAIILEPVVGN+GFI P PDFL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 243 LFKEHKGEVAAIILEPVVGNAGFIQPNPDFLAAIRKITKENDALLIFDEVMTGFRLAYGG 302
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 303 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 362
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL+ PGTY+YL+KITGELTQGI+DAGKK GHA+CGGYI GMFGFFF EGPV NF D
Sbjct: 363 HTLKRLQGPGTYDYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFFFVEGPVNNFSD 422
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 423 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQRTVAAAEKVLKQI 478
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|399785|sp|P31593.1|GSA_TOBAC RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT; Flags: Precursor gi|19873|emb|CAA46786.1| glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/356 (87%), Positives = 333/356 (93%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 123 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 182
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+
Sbjct: 183 TGRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVES 242
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE +KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 243 LFEEHKGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGG 302
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 303 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 362
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF D
Sbjct: 363 HTLKRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSD 422
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 423 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229018|ref|NP_190442.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] gi|14195661|sp|Q42522.2|GSA2_ARATH RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic; Short=GSA 2; AltName: Full=Glutamate-1-semialdehyde aminotransferase 2; Short=GSA-AT 2; Flags: Precursor gi|6523104|emb|CAB62362.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|95147290|gb|ABF57280.1| At3g48730 [Arabidopsis thaliana] gi|110738531|dbj|BAF01191.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|332644929|gb|AEE78450.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/356 (86%), Positives = 335/356 (94%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 117 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 176
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E
Sbjct: 177 TGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEK 236
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGG
Sbjct: 237 LFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGG 296
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 297 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 356
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F D
Sbjct: 357 HTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSD 416
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 417 AKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816078|ref|XP_002875922.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis lyrata subsp. lyrata] gi|297321760|gb|EFH52181.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/356 (86%), Positives = 335/356 (94%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 121 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 180
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E
Sbjct: 181 TGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKSATSDTLTAPYNDIAAVEQ 240
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGG
Sbjct: 241 LFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGG 300
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 301 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 360
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F D
Sbjct: 361 HTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSD 420
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL +I
Sbjct: 421 AKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRI 476
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467549|ref|XP_003604059.1| Glutamate-1-semialdehyde 2,1-aminomutase [Medicago truncatula] gi|345451028|gb|AEN94094.1| glutamate 1-semialdehyde aminotransferase [Medicago truncatula] gi|355493107|gb|AES74310.1| Glutamate-1-semialdehyde 2,1-aminomutase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/356 (85%), Positives = 333/356 (93%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
QVLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMG LRLARA+
Sbjct: 113 QVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAY 172
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+E+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND +A+E
Sbjct: 173 TGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEK 232
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+FE NKGEIA + LEPVVGNSGFI PKPDFL+++R+ITKEN ALL+FDEVMTGFRL+YGG
Sbjct: 233 IFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGG 292
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD+TTLGKIIGGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 293 AQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGI 352
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TLKR+KEPGTYEYL+KITGEL QGI++AGK+AGHAICGG+I+GMFGFFFTEGPVYNF D
Sbjct: 353 ETLKRIKEPGTYEYLDKITGELVQGIVEAGKRAGHAICGGHINGMFGFFFTEGPVYNFTD 412
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KFA+F+ GML EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 413 AKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 468
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 368 | ||||||
| TAIR|locus:2114520 | 472 | GSA2 "glutamate-1-semialdehyde | 0.967 | 0.754 | 0.831 | 2.8e-160 | |
| TAIR|locus:2160554 | 474 | GSA1 ""glutamate-1-semialdehyd | 0.967 | 0.751 | 0.806 | 1.7e-155 | |
| TIGR_CMR|CHY_1212 | 432 | CHY_1212 "glutamate-1-semialde | 0.983 | 0.837 | 0.549 | 5.4e-102 | |
| TIGR_CMR|GSU_0337 | 427 | GSU_0337 "glutamate-1-semialde | 0.970 | 0.836 | 0.546 | 3.9e-99 | |
| UNIPROTKB|P23893 | 426 | hemL "glutamate-1-semialdehyde | 0.989 | 0.854 | 0.501 | 3.3e-95 | |
| TIGR_CMR|BA_4693 | 429 | BA_4693 "glutamate-1-semialdeh | 0.959 | 0.822 | 0.530 | 8.7e-95 | |
| TIGR_CMR|SO_1300 | 430 | SO_1300 "glutamate-1-semialdeh | 0.989 | 0.846 | 0.504 | 3.4e-93 | |
| UNIPROTKB|Q9KU97 | 432 | hemL "Glutamate-1-semialdehyde | 0.975 | 0.831 | 0.502 | 9.3e-91 | |
| TIGR_CMR|VC_0626 | 432 | VC_0626 "glutamate-1-semialdeh | 0.975 | 0.831 | 0.502 | 9.3e-91 | |
| TIGR_CMR|CPS_4629 | 427 | CPS_4629 "glutamate-1-semialde | 0.989 | 0.852 | 0.464 | 2e-88 |
| TAIR|locus:2114520 GSA2 "glutamate-1-semialdehyde 2,1-aminomutase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
Identities = 296/356 (83%), Positives = 323/356 (90%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 117 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 176
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TG+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E
Sbjct: 177 TGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEK 236
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGG
Sbjct: 237 LFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGG 296
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 297 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 356
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F D
Sbjct: 357 HTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSD 416
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 417 AKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
|
| TAIR|locus:2160554 GSA1 ""glutamate-1-semialdehyde-2,1-aminomutase"" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 287/356 (80%), Positives = 317/356 (89%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 119 EVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
T +E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E
Sbjct: 179 TNKEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEK 238
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LF +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGG
Sbjct: 239 LFAAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGG 298
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 299 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D
Sbjct: 359 HTLKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFAD 418
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+KKS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 419 SKKSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
|
| TIGR_CMR|CHY_1212 CHY_1212 "glutamate-1-semialdehyde-2,1-aminomutase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 199/362 (54%), Positives = 250/362 (69%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL + +V AL +KKGTSFGAP LLE +AE++++A P+++MVR VNSGTEA M
Sbjct: 66 LILGHRHPKVEEALANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEATMS 125
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR FTGR +I+KFEGCYHGHAD L+KAGSG TLG+P SPGVP T+TA F
Sbjct: 126 AIRLARGFTGRNKIVKFEGCYHGHADSLLIKAGSGALTLGVPTSPGVPANIANNTITAQF 185
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND++ LE +F +IAA+ILEPV GN G + PKP FL +R +T++ GALLI DEVMT
Sbjct: 186 NDLALLEEIFAQEGNDIAAVILEPVAGNMGVVPPKPGFLEGVRELTRKYGALLIMDEVMT 245
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+ +GGAQ + V PD PVGAYGGRR+IMEMVAPAGP+YQAGTLSGN
Sbjct: 246 GFRVHWGGAQVLYNVEPDITTLGKIIGGGLPVGAYGGRREIMEMVAPAGPVYQAGTLSGN 305
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
PLAMTAGI TL LKE G YE L + + L G+ +A + AG + + M FFT
Sbjct: 306 PLAMTAGIATLTVLKEEGVYEQLEEKSSYLESGLKEAARAAGLKLWFNRVGSMLCTFFTS 365
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
V +++ A S+T KFA F++ +LE G+Y APSQFEA F SLAHS DD+ TI A+ K
Sbjct: 366 EEVVDYKTACTSDTQKFAVFFKTLLENGIYIAPSQFEAMFVSLAHSKDDLDKTIEASYKA 425
Query: 365 LR 366
+
Sbjct: 426 FK 427
|
|
| TIGR_CMR|GSU_0337 GSU_0337 "glutamate-1-semialdehyde-2,1-aminomutase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/357 (54%), Positives = 245/357 (68%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL + QV+ A+ ++ G+SFGAP LE LA MVI AVPSIEMVR V+SGTEA M
Sbjct: 64 MILGHCHPQVVEAVKRAVESGSSFGAPTELEITLARMVIDAVPSIEMVRMVSSGTEATMS 123
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR++IIKF GCYHGHAD LVKAGSG AT G+PDSPGVP TLTA F
Sbjct: 124 AIRLARGYTGRDKIIKFSGCYHGHADALLVKAGSGAATFGVPDSPGVPVDVAKNTLTAQF 183
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ++ L + NK EIA II+EP+ GN G + P FL +R I G +LIFDEVMT
Sbjct: 184 NDLDSVSKLIDENKNEIACIIVEPIAGNMGTVPPGEGFLEGLRSICDSEGIVLIFDEVMT 243
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+AYGGAQE +GVTPD PVGA+GG++DIM++++P+G +YQAGTLSGN
Sbjct: 244 GFRVAYGGAQELYGVTPDMTTLGKIIGGGLPVGAFGGKKDIMKLLSPSGGVYQAGTLSGN 303
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
PLAMTAGI TLK L+ G YE L + + L +GI +A K AG+ I + MF FFT
Sbjct: 304 PLAMTAGIETLKLLQADGFYEQLEQTSRRLAEGITEAAKSAGYPIYPTRVGSMFCTFFTS 363
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 361
V ++ A +T FA F+R MLE+G+Y APSQFE F S+AH+ +I+ TI AA
Sbjct: 364 NEVKDWPTATTCDTKAFAAFFRMMLEKGIYLAPSQFETAFVSIAHTEVEIEKTIVAA 420
|
|
| UNIPROTKB|P23893 hemL "glutamate-1-semialdehyde aminotransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 183/365 (50%), Positives = 249/365 (68%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
++L ++ + A+ E ++G SFGAP +E +A++V VP+++MVR VNSGTEA M
Sbjct: 62 MVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMS 121
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR FTGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +
Sbjct: 122 AIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCTY 181
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND++++ FE EIA II+EPV GN + P P+FL +R + E GALLI DEVMT
Sbjct: 182 NDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMT 241
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GAQ+Y+GV PD PVGA+GGRRD+M+ +AP GP+YQAGTLSGN
Sbjct: 242 GFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGN 301
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+AM AG L + +PG +E L+++T L +G+++A ++AG + ++ GMFG FFT+
Sbjct: 302 PIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTD 361
Query: 305 GP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
V ++D + +F RF+ ML+EGVY APS FEAGF S+AHS +DI +TI AA +
Sbjct: 362 AESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAARR 421
Query: 364 VLRQI 368
V ++
Sbjct: 422 VFAKL 426
|
|
| TIGR_CMR|BA_4693 BA_4693 "glutamate-1-semialdehyde-2,1-aminomutase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 190/358 (53%), Positives = 240/358 (67%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M LRLAR +
Sbjct: 73 RVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY 132
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++
Sbjct: 133 TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKY 192
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTGFR+AY
Sbjct: 193 AFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNC 252
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
Q Y+GVTPD PVGAYGG+ +IM VAP+GP+YQAGTLSGNPLAM AG
Sbjct: 253 GQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNF 310
TL +L P +Y + L G+ A +K G H I M G FFT+ PV N+
Sbjct: 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI--NRAGSMIGIFFTDEPVINY 369
Query: 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE + ++
Sbjct: 370 DAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427
|
|
| TIGR_CMR|SO_1300 SO_1300 "glutamate-1-semialdehyde-2,1-aminomutase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 184/365 (50%), Positives = 243/365 (66%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ ++ A+ + G SFGAP LE +AE VI+ VPSIE VR V+SGTEA M
Sbjct: 62 MILGHNHPKIREAVLAAVHNGLSFGAPTELEVQMAEKVIAMVPSIEQVRMVSSGTEATMS 121
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR FT R++I+KFEGCYHGHAD LVKAGSG TLG P SPG+P+ TLTA +
Sbjct: 122 AIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLGQPSSPGIPEDFAKHTLTAVY 181
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ++ +LFE EI+ II+EPV GN I P P FL +R + E GALLI DEVMT
Sbjct: 182 NDLDSVRSLFEQYPTEISCIIIEPVAGNMNCIPPIPGFLEGLRSLCDEFGALLIIDEVMT 241
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR++ GAQ ++GVTPD PVGA+GGR+D+M+ +AP GP+YQAGTLSGN
Sbjct: 242 GFRVSKSGAQGHYGVTPDLTTLGKVIGGGMPVGAFGGRKDVMQFIAPTGPVYQAGTLSGN 301
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+AM+AG+ ++ L E G YE L+ T + +G A K G + Y+ GMFGFFFTE
Sbjct: 302 PIAMSAGLAQMEALCEEGLYEALSAKTKRIAEGFKAAADKHGIPMAINYVGGMFGFFFTE 361
Query: 305 GP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
+ F+ K F FY GML+EGVY APS +EAGF S+AH ++++ T+ AA++
Sbjct: 362 QEHITRFDQVTKCNIEHFRTFYHGMLDEGVYLAPSAYEAGFLSMAHGEEELRLTLEAADR 421
Query: 364 VLRQI 368
VL ++
Sbjct: 422 VLARM 426
|
|
| UNIPROTKB|Q9KU97 hemL "Glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 181/360 (50%), Positives = 233/360 (64%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 62 MILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMS 121
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA F
Sbjct: 122 AIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTARF 181
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVMT
Sbjct: 182 NDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVMT 241
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSGN
Sbjct: 242 GFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSGN 301
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+AM AG L L+E G + L T +L G + G + + GMFGFFFTE
Sbjct: 302 PIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFTE 361
Query: 305 GPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
+ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA++
Sbjct: 362 QETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAADR 421
|
|
| TIGR_CMR|VC_0626 VC_0626 "glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 181/360 (50%), Positives = 233/360 (64%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 62 MILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATMS 121
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA F
Sbjct: 122 AIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTARF 181
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVMT
Sbjct: 182 NDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVMT 241
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSGN
Sbjct: 242 GFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSGN 301
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+AM AG L L+E G + L T +L G + G + + GMFGFFFTE
Sbjct: 302 PIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFTE 361
Query: 305 GPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
+ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA++
Sbjct: 362 QETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAADR 421
|
|
| TIGR_CMR|CPS_4629 CPS_4629 "glutamate-1-semialdehyde-2,1-aminomutase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 170/366 (46%), Positives = 239/366 (65%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ +L A+ T K G SFGAP +E +AE V VPS+E +R V+SGTEA M
Sbjct: 62 MILGHNHPAILEAVITTAKNGLSFGAPTEIEITMAEKVRELVPSMESLRMVSSGTEATMS 121
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR++I+KFEGCYHGHAD LVKAGSG TLG+P+SPG+P+ TLT +
Sbjct: 122 AIRLARGYTGRDKILKFEGCYHGHADALLVKAGSGALTLGVPNSPGIPEDFAKHTLTVSY 181
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
N++ ++ +F EIA II+EPV GN I P FL +R + + ++LIFDEVMT
Sbjct: 182 NNIDEVKEIFAKYADEIACIIVEPVAGNMNCIPPVEGFLEGLRDVCDQYSSVLIFDEVMT 241
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GGAQ ++ + PD PVGA+GG+++IM+ +AP GP+YQAGTLSGN
Sbjct: 242 GFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGKQEIMDYIAPVGPVYQAGTLSGN 301
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+AM AG+ +L L + ++ L+ T +L G+ A ++ G ++ Y+ MFGFFFTE
Sbjct: 302 PIAMAAGLASLTELAQGNKHQQLSSATEKLAMGLKAAAERNGVSLSVNYVGAMFGFFFTE 361
Query: 305 --GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 362
P+ +E A + + F RF+ ML+EGVY APS +E GF S +H+ D I+ T+ AA+
Sbjct: 362 DKNPITTYEQATQCDGEMFKRFFHLMLDEGVYLAPSSYETGFLSTSHTDDIIEKTLVAAD 421
Query: 363 KVLRQI 368
K Q+
Sbjct: 422 KCFAQL 427
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B7KA18 | GSA_CYAP7 | 5, ., 4, ., 3, ., 8 | 0.7280 | 0.9592 | 0.8152 | yes | no |
| B8HYK1 | GSA_CYAP4 | 5, ., 4, ., 3, ., 8 | 0.7214 | 0.9755 | 0.8310 | yes | no |
| Q2JMP7 | GSA_SYNJB | 5, ., 4, ., 3, ., 8 | 0.7047 | 0.9755 | 0.8233 | yes | no |
| A2C0U2 | GSA_PROM1 | 5, ., 4, ., 3, ., 8 | 0.6880 | 0.9755 | 0.8387 | yes | no |
| A2BVE5 | GSA_PROM5 | 5, ., 4, ., 3, ., 8 | 0.6601 | 0.9755 | 0.8290 | yes | no |
| Q55665 | GSA_SYNY3 | 5, ., 4, ., 3, ., 8 | 0.7078 | 0.9673 | 0.8221 | N/A | no |
| A5GUJ2 | GSA_SYNR3 | 5, ., 4, ., 3, ., 8 | 0.6910 | 0.9673 | 0.8202 | yes | no |
| A7NKV1 | GSA_ROSCS | 5, ., 4, ., 3, ., 8 | 0.5879 | 0.9891 | 0.8387 | yes | no |
| P18492 | GSA_HORVU | 5, ., 4, ., 3, ., 8 | 0.8146 | 0.9673 | 0.7590 | N/A | no |
| P45621 | GSA_SOYBN | 5, ., 4, ., 3, ., 8 | 0.8511 | 0.9673 | 0.7639 | yes | no |
| A3PBK8 | GSA_PROM0 | 5, ., 4, ., 3, ., 8 | 0.6601 | 0.9755 | 0.8290 | yes | no |
| A5UU40 | GSA_ROSS1 | 5, ., 4, ., 3, ., 8 | 0.5933 | 0.9755 | 0.8407 | yes | no |
| A5GMT2 | GSA_SYNPW | 5, ., 4, ., 3, ., 8 | 0.6852 | 0.9755 | 0.8290 | yes | no |
| Q46GT9 | GSA_PROMT | 5, ., 4, ., 3, ., 8 | 0.6880 | 0.9755 | 0.8310 | yes | no |
| Q7VDA1 | GSA_PROMA | 5, ., 4, ., 3, ., 8 | 0.6852 | 0.9755 | 0.8290 | yes | no |
| Q7V677 | GSA_PROMM | 5, ., 4, ., 3, ., 8 | 0.6894 | 0.9538 | 0.8200 | yes | no |
| A9BEA5 | GSA_PROM4 | 5, ., 4, ., 3, ., 8 | 0.6880 | 0.9755 | 0.8310 | yes | no |
| Q3AWP4 | GSA_SYNS9 | 5, ., 4, ., 3, ., 8 | 0.7008 | 0.9538 | 0.8200 | yes | no |
| Q7U598 | GSA_SYNPX | 5, ., 4, ., 3, ., 8 | 0.6824 | 0.9755 | 0.8387 | yes | no |
| B1XIT5 | GSA_SYNP2 | 5, ., 4, ., 3, ., 8 | 0.7275 | 0.9673 | 0.8240 | yes | no |
| Q0I8G1 | GSA_SYNS3 | 5, ., 4, ., 3, ., 8 | 0.7037 | 0.9538 | 0.8013 | yes | no |
| Q40147 | GSA_SOLLC | 5, ., 4, ., 3, ., 8 | 0.8623 | 0.9673 | 0.7401 | N/A | no |
| Q39QA6 | GSA_GEOMG | 5, ., 4, ., 3, ., 8 | 0.5659 | 0.9891 | 0.8524 | yes | no |
| P31593 | GSA_TOBAC | 5, ., 4, ., 3, ., 8 | 0.8764 | 0.9673 | 0.7447 | N/A | no |
| B1X023 | GSA_CYAA5 | 5, ., 4, ., 3, ., 8 | 0.7270 | 0.9755 | 0.8290 | yes | no |
| B7K2I1 | GSA_CYAP8 | 5, ., 4, ., 3, ., 8 | 0.7214 | 0.9755 | 0.8290 | yes | no |
| A9B550 | GSA_HERA2 | 5, ., 4, ., 3, ., 8 | 0.5989 | 0.9891 | 0.8484 | yes | no |
| Q3M3B9 | GSA_ANAVT | 5, ., 4, ., 3, ., 8 | 0.7242 | 0.9755 | 0.8310 | yes | no |
| B2J7M9 | GSA_NOSP7 | 5, ., 4, ., 3, ., 8 | 0.7298 | 0.9755 | 0.8310 | yes | no |
| A2BPW6 | GSA_PROMS | 5, ., 4, ., 3, ., 8 | 0.6573 | 0.9755 | 0.8290 | yes | no |
| B0CC57 | GSA_ACAM1 | 5, ., 4, ., 3, ., 8 | 0.7103 | 0.9755 | 0.8310 | yes | no |
| P24630 | GSA_SYNP6 | 5, ., 4, ., 3, ., 8 | 0.7242 | 0.9755 | 0.8290 | yes | no |
| Q110Z9 | GSA_TRIEI | 5, ., 4, ., 3, ., 8 | 0.7130 | 0.9755 | 0.8310 | yes | no |
| Q6YZE2 | GSA_ORYSJ | 5, ., 4, ., 3, ., 8 | 0.8253 | 0.9646 | 0.7426 | yes | no |
| A8G3J9 | GSA_PROM2 | 5, ., 4, ., 3, ., 8 | 0.6685 | 0.9755 | 0.8290 | yes | no |
| Q3ALU9 | GSA_SYNSC | 5, ., 4, ., 3, ., 8 | 0.7008 | 0.9538 | 0.8200 | yes | no |
| Q8DLK8 | GSA_THEEB | 5, ., 4, ., 3, ., 8 | 0.7158 | 0.9755 | 0.8215 | yes | no |
| Q7V2J3 | GSA_PROMP | 5, ., 4, ., 3, ., 8 | 0.6657 | 0.9755 | 0.8290 | yes | no |
| A2C7I7 | GSA_PROM3 | 5, ., 4, ., 3, ., 8 | 0.6894 | 0.9538 | 0.8200 | yes | no |
| Q31QJ2 | GSA_SYNE7 | 5, ., 4, ., 3, ., 8 | 0.7270 | 0.9755 | 0.8290 | yes | no |
| Q42522 | GSA2_ARATH | 5, ., 4, ., 3, ., 8 | 0.8651 | 0.9673 | 0.7542 | yes | no |
| Q2RJ31 | GSA_MOOTA | 5, ., 4, ., 3, ., 8 | 0.5726 | 0.9891 | 0.8329 | yes | no |
| Q31C50 | GSA_PROM9 | 5, ., 4, ., 3, ., 8 | 0.6601 | 0.9755 | 0.8271 | yes | no |
| Q7NPI4 | GSA_GLOVI | 5, ., 4, ., 3, ., 8 | 0.6629 | 0.9673 | 0.8240 | yes | no |
| Q85WB7 | GSA_BRANA | 5, ., 4, ., 3, ., 8 | 0.8483 | 0.9673 | 0.7526 | N/A | no |
| Q8YS26 | GSA_NOSS1 | 5, ., 4, ., 3, ., 8 | 0.7242 | 0.9755 | 0.8310 | yes | no |
| Q2JS70 | GSA_SYNJA | 5, ., 4, ., 3, ., 8 | 0.7075 | 0.9755 | 0.8233 | yes | no |
| B0JPW6 | GSA_MICAN | 5, ., 4, ., 3, ., 8 | 0.7186 | 0.9755 | 0.8290 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.4.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.4.3.8 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 368 | |||
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 0.0 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 0.0 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 0.0 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 1e-180 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 1e-158 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-103 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 8e-89 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 9e-58 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-55 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 4e-51 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 3e-46 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-41 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-40 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-39 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 8e-38 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 8e-38 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-36 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 1e-35 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 6e-35 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 4e-34 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 5e-33 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 6e-33 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 8e-33 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 4e-32 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 5e-32 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-30 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 3e-30 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 3e-30 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 7e-30 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 1e-28 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 3e-28 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 4e-28 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 4e-28 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 3e-27 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 3e-27 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 8e-27 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 2e-26 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 1e-25 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 2e-25 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 2e-25 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 2e-25 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 2e-25 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 3e-25 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 8e-25 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-24 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 5e-24 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 7e-24 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 1e-22 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 4e-21 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 6e-21 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 1e-20 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 3e-18 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 4e-18 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 2e-17 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 3e-17 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 3e-17 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 5e-17 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 2e-16 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 1e-15 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 1e-15 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 2e-15 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 3e-15 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 3e-15 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 2e-14 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 3e-14 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 3e-14 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 9e-14 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 1e-13 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 5e-13 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 8e-13 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-11 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 1e-11 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 5e-11 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 9e-11 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-10 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-10 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 4e-10 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 4e-10 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 5e-10 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 5e-09 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-06 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 2e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 3e-06 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 4e-06 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 4e-06 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 9e-06 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 1e-04 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-04 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 738 bits (1906), Expect = 0.0
Identities = 302/356 (84%), Positives = 331/356 (92%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPS+EMVRFVNSGTEACMGVLRLARA+
Sbjct: 119 EVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAY 178
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGRE+IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT TLTAP+ND+ A++
Sbjct: 179 TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKK 238
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE NKGEIAA+ILEPVVGNSGFI PK +FL +R ITKENGALL+FDEVMTGFR+AYGG
Sbjct: 239 LFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGG 298
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQEYFG+TPDLTTLGK+IGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 299 AQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
HTLKRL++PGTYEYL+KIT +L QGI++AGKKAGH +CGGYISGMFGFFFTEGPVYNF D
Sbjct: 359 HTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFAD 418
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T KFARF+RGMLEEGVY APSQFEAGFTSLAH+ +DI TI AAE+VL +I
Sbjct: 419 AKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474
|
Length = 474 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 657 bits (1699), Expect = 0.0
Identities = 231/356 (64%), Positives = 274/356 (76%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V+ A+ E +KG SFGAP LE LAE+VI VPSIEMVR VNSGTEA M +RLAR +
Sbjct: 70 EVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGY 129
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR++IIKFEGCYHGHAD LVKAGSG ATLGLPDSPGVP+ TLTAP+ND+ A+E
Sbjct: 130 TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEE 189
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LFE EIAA+I+EPV GN G + PKP FL +R + E+GALLIFDEVMTGFR+A GG
Sbjct: 190 LFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGG 249
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQ Y+GVTPDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGNPLAM AG+
Sbjct: 250 AQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGL 309
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TLK LKEPG YE L +T L +G+ +A KKAG + + MFG FFT+ PV N+ D
Sbjct: 310 ATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYAD 369
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+T +FARF+ ML+EGVY APSQFEAGF S AH+ +DI+ T+ AA K +
Sbjct: 370 AKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKTLEAARKAFAAL 425
|
Length = 426 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 531 bits (1371), Expect = 0.0
Identities = 208/365 (56%), Positives = 267/365 (73%), Gaps = 1/365 (0%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ V+ A+ E +++G SFGAP LE LAE++I VPSIE VRFVNSGTEA M
Sbjct: 65 LILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMS 124
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLARA+TGR++IIKFEGCYHGH+D LVKAGSG ATLG P SPGVP TL P+
Sbjct: 125 AIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY 184
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE FE +IAA+I+EPV GN G + P+P FL +R +T+E+GALLIFDEV+T
Sbjct: 185 NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT 244
Query: 185 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GGAQ Y+GV PDLTTLGKIIGGGLP+GA+GGR +IME +AP GP+YQAGTLSGN
Sbjct: 245 GFRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGN 304
Query: 245 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303
PLAM AG+ TL+ L G YE L+ + L +G+ A ++ G + + MFG FFT
Sbjct: 305 PLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFT 364
Query: 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
E V N+ DAK+S+ +FA+F+ +L GVY APSQFEAGF S AH+ +DI T+ AA++
Sbjct: 365 EEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDRTLEAADE 424
Query: 364 VLRQI 368
+++
Sbjct: 425 AFKEL 429
|
Length = 432 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 507 bits (1307), Expect = e-180
Identities = 214/364 (58%), Positives = 272/364 (74%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ +V+ A+ E +++GTS+GAP E +LA+ +IS VPS+EMVRFVNSGTEA M
Sbjct: 60 LILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMS 119
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR++IIKFEGCYHGH D LVKAGSG ATLGLP SPGVP+ TL P+
Sbjct: 120 AVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY 179
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE +FE EIA +I+EPV GN G + PKP+FL +R +T+E G+LLIFDEVMT
Sbjct: 180 NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT 239
Query: 185 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+A GGAQEYFGV PDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGN
Sbjct: 240 GFRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGN 299
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
PLAM AG+ TLK L E G Y L+++ L +G+ + + G + MF FFTE
Sbjct: 300 PLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTE 359
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
V N+ DAKKS+T FA+F+ ML++GV+ PSQFEA F S AH+ +DI++TI AAE+V
Sbjct: 360 EEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENTIEAAEEV 419
Query: 365 LRQI 368
++
Sbjct: 420 FAEL 423
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 451 bits (1162), Expect = e-158
Identities = 180/364 (49%), Positives = 250/364 (68%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
II ++ + A+ E + G +G P LE A+M+ A+PS+E VRFVNSGTEA M
Sbjct: 65 IITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMT 124
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+R+ARA+TGR +IIKF GCYHGH+D LV AGSG +TLG PDS GVPK E +T PF
Sbjct: 125 TIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF 184
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ AL+ + E+AA+++EP+VGN G + PKP FL A+ + E GAL+I+DEV+T
Sbjct: 185 NDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT 244
Query: 185 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
FR YGGAQ+ GV PDLT LGKIIGGGLP+GAYGGR+DIME VAP GP YQAGT++GN
Sbjct: 245 AFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGN 304
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P +M AGI L+ L++ G YE L+++ L +GI++A +K G I + G +FT+
Sbjct: 305 PASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTD 364
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
V N++ A++S+ F +F++ ML +G+ APS++EA F + AH+ +DI+ T+ A ++
Sbjct: 365 EKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTAHTEEDIEETLEAVDRA 424
Query: 365 LRQI 368
Q+
Sbjct: 425 FAQL 428
|
Length = 428 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = e-103
Identities = 129/363 (35%), Positives = 180/363 (49%), Gaps = 17/363 (4%)
Query: 14 VLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 69
V+ AL E + K T F LAE++++ P ++ V FVNSGTEA L+LA
Sbjct: 57 VVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLA 116
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG----LPDSPGVPKGATYETLTAPFN 125
RA+TGR++II FEG YHG L GS G LP VP Y +
Sbjct: 117 RAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD 176
Query: 126 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
D+ ALE E + E+AA+I+EP+ G G I P P +L A+R + +++G LLI DEV TG
Sbjct: 177 DLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG 236
Query: 186 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
F R A E+FGV PD+ TLGK +GGGLP+GA GR +IM+ PAGP GT GN
Sbjct: 237 FGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMD-AFPAGPGLHGGTFGGN 295
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
PLA A + L+ L+E G E ++ L + + + +K M G +
Sbjct: 296 PLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVK 355
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEAGFTSLAHSSDDIQHTITAAE 362
K + A+ + LE G+ PS L + ++I + A +
Sbjct: 356 DRA-----TKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALD 410
Query: 363 KVL 365
+ L
Sbjct: 411 EAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 8e-89
Identities = 134/351 (38%), Positives = 191/351 (54%), Gaps = 5/351 (1%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 68
S+ ++ A+ + ++GTS+G E + AE + S + +RFV+SGTEA M +RL
Sbjct: 70 SHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRL 129
Query: 69 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE--TLTAPFND 126
AR TGR IIKF GCYHGHAD L G + L + TL+ P+ND
Sbjct: 130 ARGITGRSIIIKFLGCYHGHADTLL--QGISFSETSLDTLTHLVDTDLAHPLTLSLPYND 187
Query: 127 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
+ + + +A +I EP+ N G + PKP F+ I + + G+L I DEV+TGF
Sbjct: 188 FQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF 247
Query: 187 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 246
R+A GGA + V PD+T GKI+GGGLP A + IM+ +AP G ++QAGTLSGNPL
Sbjct: 248 RVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPL 307
Query: 247 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306
AM AG ++ +E G Y L+ + I + + G + MF FFF E
Sbjct: 308 AMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENR 367
Query: 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 357
N +A+ S+ F FY+ +GVY +PS FEA F S AHS +++ +
Sbjct: 368 PNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAHSMENLDYA 418
|
Length = 433 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 9e-58
Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 41/368 (11%)
Query: 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 70
Y V+ A+ E ++ G +F P +E AE + + +MV+F +G++A +RLAR
Sbjct: 66 YPPVVEAVREALQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLAR 125
Query: 71 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 130
A+TGR+ + + C PF + T P S G+P + T+T +ND+++L
Sbjct: 126 AYTGRDLVAR---CAD---HPFFSTDDWFIGTT--PMSAGIPASVSALTVTFRYNDIASL 177
Query: 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190
E LFE++ G IA +ILEP + P+ FL+ +RR+ ENGAL I DE++TGFR
Sbjct: 178 EALFEDHPGRIACVILEPATADE----PQDGFLHEVRRLCHENGALFILDEMITGFRWHM 233
Query: 191 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG---------TL 241
GAQ+ +G+ PDL+ GK +G G V A G+R+ ME+ G + T
Sbjct: 234 RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMEL----GGLEHTDRERVFLLSTTH 289
Query: 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG---HAICGGYISGMF 298
A+ A I T+ ++ E L++ +L G+ +A + G H G +
Sbjct: 290 GAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCL- 348
Query: 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTI 358
+ T + + S+ + F + + GV PS S AH DI+ TI
Sbjct: 349 -TYSTLDG-----NGQPSQAFR-TLFLQETIRRGV-LMPSL----VVSYAHGDADIERTI 396
Query: 359 TAAEKVLR 366
A L
Sbjct: 397 DAVHGALG 404
|
Length = 431 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-55
Identities = 93/287 (32%), Positives = 131/287 (45%), Gaps = 34/287 (11%)
Query: 14 VLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 69
++ A+ E K T LAE + P ++ V F+NSG+EA ++LA
Sbjct: 37 IVQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLA 96
Query: 70 RA------FTGRERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTA 122
R TG+ +II F G +HG L V SG P PGV
Sbjct: 97 RQYAKKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGYKKGFGPSLPGVYF--------L 148
Query: 123 PFNDVSALEN-----------LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171
P+ D+ A E + + IAA+I+EP+ G G + P P FL +R I K
Sbjct: 149 PYPDLEAAEEELACADEALRLIKAVHDDNIAAVIVEPIQGEGGVVPPPPGFLAGLREICK 208
Query: 172 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 230
++G LLI DEV TGF R A E++GVTPD+ TL K + GGLP+ A +IM+
Sbjct: 209 KHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIMTLAKALTGGLPLSAVLATAEIMQAFH 268
Query: 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 277
P GT GNPLA A + L +++ + + L +G
Sbjct: 269 PGS---HGGTFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYLRKG 312
|
Length = 338 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 4e-51
Identities = 89/253 (35%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLV 94
LAE ++ P + V F NSG EA L+LAR +TG + +II FE +HG +
Sbjct: 89 LAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRT-LGAL 147
Query: 95 KAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152
A P PG PFND+ ALE + + AA+I+EP+ G
Sbjct: 148 SATGQPKYRKGFGPLLPGF--------RHVPFNDIEALEAAID---EDTAAVIVEPIQGE 196
Query: 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 211
G I P+FL A+R + E+GALLI DEV TG R A E++GV PD+ TL K +G
Sbjct: 197 GGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALG 256
Query: 212 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 271
GG P+GA +I P T GNPLA + L+ L E G E + +
Sbjct: 257 GGFPIGAMLATEEIASAFTPGD---HGSTFGGNPLACAVALAVLEVLLEEGLLENVREKG 313
Query: 272 GELTQGIIDAGKK 284
L Q + + ++
Sbjct: 314 EYLLQRLRELKRR 326
|
Length = 404 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-46
Identities = 88/242 (36%), Positives = 121/242 (50%), Gaps = 25/242 (10%)
Query: 38 LAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH------- 88
LAE + + P V F NSG EA +++ARA+TGR +I F+G +HG
Sbjct: 104 LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSL 163
Query: 89 -ADPFLVKAGSG-----VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 139
KAG G V + P+ P G E + +E + +
Sbjct: 164 TGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA--LEYIERALFDLEVGPE 221
Query: 140 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 198
E+AAII+EP+ G G I P FL A+R++ +E+G LLI DEV TGF R A E+FG
Sbjct: 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFG 281
Query: 199 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 258
V PD+ TL K +GGGLP+ A GR +IM+ GT GNP+A A + L +
Sbjct: 282 VEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPGG----HGGTFGGNPVACAAALAVLDVI 337
Query: 259 KE 260
+E
Sbjct: 338 EE 339
|
Length = 447 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 88/250 (35%), Positives = 118/250 (47%), Gaps = 42/250 (16%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 96
LAE + P ++ F NSG EA G L+LA+ T R II F GC+HG
Sbjct: 91 LAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT------- 143
Query: 97 GSGVATLGL------------PDSPGV-----------PKGATYETLTAPFNDVSALENL 133
+ L + P V PKG E + LE+L
Sbjct: 144 ---LGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL--ECLRDLESL 198
Query: 134 FEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 190
F++ E+AA+I+EPV+G G+I P FL +R I +G LLIFDEV TGF R
Sbjct: 199 FKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE 258
Query: 191 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 250
A + FGV PD+ T+ K I GLP+ A +++ME P G T GNP+A A
Sbjct: 259 WFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQ-WPLGS--HGTTFGGNPVACAA 315
Query: 251 GIHTLKRLKE 260
+ TL+ +KE
Sbjct: 316 ALATLEVIKE 325
|
Length = 433 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-40
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 31/247 (12%)
Query: 50 EMVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGVATLG 104
+ V F NSG EA L+LAR +TG +++II FE +HG T+G
Sbjct: 85 DRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGR-------------TMG 131
Query: 105 LPDSPGVPKGATY-ETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158
+ G PK E L AP+ND+ +L+ + E AA+I+EP+ G G
Sbjct: 132 ALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPA 188
Query: 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVG 217
+FL A+R I K+ ALLIFDEV TG R A E++G+ PD+ TL K +GGG+P+G
Sbjct: 189 SAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGGVPIG 248
Query: 218 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 277
A + ++ E P T GNPLA A + L+ +++ E + + +
Sbjct: 249 ATLAKEEVAEAFTPGD---HGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKER 305
Query: 278 IIDAGKK 284
+ + GK
Sbjct: 306 LEELGKN 312
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-39
Identities = 88/234 (37%), Positives = 124/234 (52%), Gaps = 17/234 (7%)
Query: 33 LLENVLAEMV---ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89
L N L E V ++ + ++V F NSG EA L+LAR TG+ +I+ FE +HG
Sbjct: 67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRT 126
Query: 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149
F + +G + P +P G T+ PFND+ AL+ + E+AA++LE V
Sbjct: 127 --FGTMSATGQEKIKEGFGPLLP-GFTH----VPFNDIKALKEVMN---EEVAAVMLEVV 176
Query: 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 208
G G I P FL ++ + K+ GALLI DEV TG R A E FG+ PD+ T+ K
Sbjct: 177 QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAK 236
Query: 209 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262
+G G+PVGA G++ E+ GP T GNPLAM A L+ +K+P
Sbjct: 237 GLGNGIPVGAMIGKK---ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287
|
Length = 377 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 8e-38
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 37/222 (16%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIK-----FEGCYHGHADPFLVKAGSGVATLGLPDS 108
F NSG EA ++LAR + ++ I K E +HG +ATL
Sbjct: 101 FCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRT----------LATLSATGQ 150
Query: 109 PGVPKGATYETL-----TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
P +G +E L PFND+ AL+ + AA++LEP+ G G ++L
Sbjct: 151 PKYQEG--FEPLVEGFIYVPFNDIEALKAAITDK---TAAVMLEPIQGEGGVNPADKEYL 205
Query: 164 NAIRRITKENGALLIFDEVMTGF-----RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 218
A+R + ENG LLI DEV TG AY +++G+ PD+ TL K +GGG+P+GA
Sbjct: 206 QALRELCDENGILLILDEVQTGMGRTGKLFAY----QHYGIEPDIMTLAKGLGGGVPIGA 261
Query: 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
+ + ++ P T GNPLA A + ++ ++E
Sbjct: 262 VLAKEKVADVFTPGD---HGSTFGGNPLACAAALAVIEIIEE 300
|
Length = 396 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 8e-38
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT-----LGLPDS 108
+ T+A VLR ARA TGR +I+ F GCYHG D V G LG
Sbjct: 135 VATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLG---- 190
Query: 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168
AT T FND++ALE G++AA++ EP + N G + P+P F A+R
Sbjct: 191 QVHDLTAT--TRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRE 246
Query: 169 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI--- 225
+T+ G LL+ DE T GG G+ PD +GK I GG+P YG ++
Sbjct: 247 LTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAER 305
Query: 226 MEMVAPAGPMYQAG---TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
+ + P +G TLS N LAM A TL + Y ++ + L G+
Sbjct: 306 AQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGL 361
|
Length = 453 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-36
Identities = 88/248 (35%), Positives = 121/248 (48%), Gaps = 36/248 (14%)
Query: 38 LAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-------- 87
LAE ++ P V F NSGTE+ +++AR TGR+ II F G +HG
Sbjct: 102 LAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSL 161
Query: 88 ---------HADPFLVKAGSGVATLGLPDSPGVPKGA-TYETLTAPFNDVSAL--ENLFE 135
P + GV + P+ P G E N V + LF+
Sbjct: 162 TASKPVQRKGFFPLM----PGVIHVPYPNPYRNPWGIENPEECG---NAVLDFIEDYLFK 214
Query: 136 N--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192
E+AAII+EP+ G G++ P +F +R++ + G LLI DEV TG R
Sbjct: 215 KLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF 274
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
A E+FGV PD+ TL K I GGLP+GA GR ++M + P G A T GNP+A A +
Sbjct: 275 AIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFL--PPGS--HANTFGGNPVAAAAAL 330
Query: 253 HTLKRLKE 260
TL+ L+E
Sbjct: 331 ATLEELEE 338
|
Length = 441 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 81/236 (34%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 50 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATL 103
+ V F NSG EA ++ AR + R RII FEG +HG + G
Sbjct: 89 DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLE 148
Query: 104 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
G P VP G PF D+ AL+ N AAI++EP+ G G +FL
Sbjct: 149 GF--GPLVP-GFDQ----VPFGDIEALKAAITPN---TAAILIEPIQGEGGIRPAPDEFL 198
Query: 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222
+R++ ENG LLIFDEV G R A E+ GVTPD+ + K IGGG P+GA
Sbjct: 199 KGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGGFPLGACLAT 258
Query: 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
+ + + P T GNPLAM G L + PG + + ++ L Q +
Sbjct: 259 EEAAKGMTPGT---HGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL 311
|
Length = 389 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 6e-35
Identities = 90/259 (34%), Positives = 125/259 (48%), Gaps = 34/259 (13%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL-- 93
LAE + + VP + FV +G EA +++ARA TGR +I F G +HG F+
Sbjct: 88 LAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT--FMGM 145
Query: 94 --------VKAGSGVATLGLPDSPGVP-----KGATYETLTAPFNDVSALENLFENN--K 138
K G G +PD VP G + E ++AL+ LF+ +
Sbjct: 146 SLTGKVVPYKVGFGAM---MPDVYHVPFPVELHGVSVE------QSLAALDKLFKADVDP 196
Query: 139 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 197
+AAII+EPV G GF F+ A+R + ++G LLI DEV TGF R A E+
Sbjct: 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHH 256
Query: 198 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 257
V DLTT+ K + GG P+ A GR +IM+ P G GT GNPL + A L
Sbjct: 257 EVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGG---LGGTYGGNPLGIAAAHAVLDV 313
Query: 258 LKEPGTYEYLNKITGELTQ 276
++E E N++ L Q
Sbjct: 314 IEEEDLCERANQLGNRLKQ 332
|
Length = 425 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH-------- 88
LAE +I P V F SG++A G ++ ARA+T R +I+ + Y+G
Sbjct: 89 LAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLT 148
Query: 89 ADPFLVKAG----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIA 142
F V+A S V + PD P G + V ++ FE +A
Sbjct: 149 GLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKM--ECVEYIKEKFEGEVYAEGVA 206
Query: 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 201
A+ EP+ G++G I P D+ +++I E+G LL+ DEV +G R A E+FGV P
Sbjct: 207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEP 266
Query: 202 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 261
D+ TLGK +GGGLP+ A GR +IM+ + P + TLSGNP+A A + ++ ++E
Sbjct: 267 DIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAF---TLSGNPVASAAALAVIEEIEEK 323
Query: 262 GTYEYLNKI 270
+ K+
Sbjct: 324 NLLKRAEKL 332
|
Length = 443 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 91/259 (35%), Positives = 122/259 (47%), Gaps = 39/259 (15%)
Query: 38 LAEMVIS--AVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
LAE ++ P V F NSG EA +LAR TGR +I+ EG +HG
Sbjct: 90 LAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRT------ 142
Query: 96 AGSGVATLGLPDSPGVPKGATYETLTA-----PFNDVSALENLFENNKGEIAAIILEPVV 150
G+ T G P K A +E L P+ DV AL + + AA+ LEP+
Sbjct: 143 MGALALT-GQPA-----KRAPFEPLPGGVEHVPYGDVDALAAAVD---DDTAAVFLEPIQ 193
Query: 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 209
G +G + P +L A R IT +GALL+ DEV TG R A ++ GVTPD+ TL K
Sbjct: 194 GEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKG 253
Query: 210 IGGGLPVGAYGGRRDIMEMVA--PAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPGT 263
+GGGLP+GA +A PA + G T GNP+A A + L + G
Sbjct: 254 LGGGLPIGA---------CLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGL 304
Query: 264 YEYLNKITGELTQGIIDAG 282
E ++ +L GI G
Sbjct: 305 LENAERLGEQLRAGIEALG 323
|
Length = 398 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 6e-33
Identities = 78/265 (29%), Positives = 116/265 (43%), Gaps = 38/265 (14%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHA 89
LAE I+ + + V +NSG EA L+ AR + + +II G + G
Sbjct: 77 LAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRT 136
Query: 90 DPFLVKAGSGVATLGLPDSPGV-----PKGATYETLTAPFNDVSALENLFENNKGEIAAI 144
+ P P +E +NDV ALE L ++ +AA
Sbjct: 137 ----------IGACSASTDPKCYNNFGPFVPGFEL--VDYNDVEALEKLLQDPN--VAAF 182
Query: 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTP 201
I+EP+ G +G I P +L + + K+ LLI DE+ TG L G A ++ GV P
Sbjct: 183 IVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHDHEGVKP 240
Query: 202 DLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLK 259
D+ LGK + GGL P+ A D+M ++ P + G T GNPLA + L+ LK
Sbjct: 241 DIVLLGKALSGGLYPISAVLANDDVMLVIKPG----EHGSTYGGNPLACAVAVEALEVLK 296
Query: 260 EPGTYEYLNKITGELTQGIIDAGKK 284
E E ++ G+ + KK
Sbjct: 297 EEKLAENAQRLGEVFRDGLKELLKK 321
|
Length = 400 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-33
Identities = 80/218 (36%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 52 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAG-SGVATLGL 105
V F NSG EA G ++LAR + G II F+ +HG + +G G T+
Sbjct: 96 VFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFA 155
Query: 106 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165
P PG PK A ND++++E L + + A++LEPV G G I +F+
Sbjct: 156 PQVPGFPK--------AELNDIASVEKLITD---KTVAVMLEPVQGEGGVIPATREFMQQ 204
Query: 166 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224
+R +TK++G LLI DEV TG R A E G+ PD+ TLGK IGGG+P+ A +
Sbjct: 205 LRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGGVPLAALLAK-- 262
Query: 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262
VA Q GT +GNPL G+ + +L PG
Sbjct: 263 --AEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG 298
|
Length = 395 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 86/217 (39%), Positives = 124/217 (57%), Gaps = 16/217 (7%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VA--TLGLPDSPG 110
F +G EA +++ARA+TGR +I F G +HG L A +G VA +G PG
Sbjct: 106 FFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT--LLTMALTGKVAPYKVGFGPFPG 163
Query: 111 VPKGATYETL---TAPFNDVSALENLFENNKG--EIAAIILEPVVGNSGF-IAPKPDFLN 164
A Y + +S++E LF+ + ++AAI+LEP+ G GF +AP P+F++
Sbjct: 164 SIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAP-PEFMS 222
Query: 165 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRR 223
A+R + E+G LLI DEV TGF R A EY+ V PDL T+ K +GGG+P+ A GR
Sbjct: 223 ALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRA 282
Query: 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
++M+ AP G GT +GNPLA+ A + L + E
Sbjct: 283 EVMDAPAPGG---LGGTYAGNPLAVAAALAVLDVIAE 316
|
Length = 421 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-32
Identities = 84/241 (34%), Positives = 118/241 (48%), Gaps = 30/241 (12%)
Query: 55 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----PDSP 109
V +G+EA +++ARA T R +I F G YHG TL L P S
Sbjct: 108 VTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRT----------HYTLALTGKVNPYSA 157
Query: 110 GV---PKGATYETLTAPFNDVS------ALENLFENNK--GEIAAIILEPVVGNSGFIAP 158
G+ P P + VS ++E +F+N+ +IAAII+EPV G GF A
Sbjct: 158 GMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAA 217
Query: 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVG 217
P F+ +R + E+G +LI DEV TG R A E GV DLTT K I GG P+
Sbjct: 218 SPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLA 277
Query: 218 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 277
GR ++M+ +AP G GT +GNP+A A + LK ++ + N + +L G
Sbjct: 278 GVTGRAEVMDAIAPGG---LGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDG 334
Query: 278 I 278
+
Sbjct: 335 L 335
|
Length = 425 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 24/245 (9%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD----------PFLVKAGSGV--- 100
F NSG EA +++AR++TGR ++ F+ +HG + P+ K+G G
Sbjct: 99 FFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPY--KSGFGPFAP 156
Query: 101 ATLGLPDSPGVPKGATYETLTAPFNDV-SALENLFENNKG--EIAAIILEPVVGNSGFIA 157
P G + L+ + +A +F + G +AA+++EPV G GFI
Sbjct: 157 EVYRAPLPYPYRDGLLDKQLS--TDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIV 214
Query: 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPV 216
P F+ A+ +E+G + I DEV TGF R A E+ G PDL T K + GLP+
Sbjct: 215 PAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADGLPL 274
Query: 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 276
GR +IM+ AP G GT +GNPLA A + L ++ G E +I +T
Sbjct: 275 SGVTGRAEIMDAPAPGG---LGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331
Query: 277 GIIDA 281
+
Sbjct: 332 RLTTL 336
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 37/234 (15%)
Query: 51 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-----------------HADPFL 93
V F SG++A G+++ ARA+TGR II F YHG P L
Sbjct: 105 RVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLL 164
Query: 94 VKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFEN--NKGEIAAIILE 147
G + PD P E AP + +FE E+A I++E
Sbjct: 165 ----PGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE------MFEKYLPADEVACIVIE 214
Query: 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 206
+ G+ G + P P + A+ + +E+G L D++ G R + +F +TPDL +
Sbjct: 215 TIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSF 274
Query: 207 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
GK + GG+P+ A GR++IME + ++ T NP++ A + T+ +++
Sbjct: 275 GKSLAGGMPMSAIVGRKEIMESLEAPAHLF---TTGANPVSCAAALATIDMIED 325
|
Length = 445 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 74/215 (34%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 54 FVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110
F NSGTE+ L+LA+A+ G+ I G +HG + L + + +T P P
Sbjct: 146 FCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL--SATAKSTFRKPFMPL 203
Query: 111 VPKGATYETLTAPFNDVSALENLFENNK--GE-IAAIILEPVVGNSGFIAPKPDFLNAIR 167
+P PF ++ A+ K G+ +AA+ILEP+ G G I P +L A+R
Sbjct: 204 LP-----GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVR 258
Query: 168 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI 225
++ E GALLI DEV TG R A E+ V PD+ L K +GGG +P+GA ++
Sbjct: 259 KLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEV 318
Query: 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
++ P T GNPLA A + T+ L E
Sbjct: 319 FSVLFD-NPFLHTTTFGGNPLACAAALATINVLLE 352
|
Length = 459 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 7e-30
Identities = 75/260 (28%), Positives = 101/260 (38%), Gaps = 45/260 (17%)
Query: 38 LAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHA 89
LAE + P + V F +SG+EA L++A + R++ I YHG
Sbjct: 92 LAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHG-- 149
Query: 90 DPFLVKAGSGVATLGLPDSPG---------------------VPKGATYETLTAPFNDVS 128
+ + + +G E
Sbjct: 150 --------DTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAAD 201
Query: 129 ALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
LE L + IAA I+EPVVG G + P P +L +R I + G LLI DEV TGF
Sbjct: 202 ELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGF 261
Query: 187 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIME--MVAPAGPMYQAGTLS 242
R A E+ G+ PD+ L K + GG LP+ A I E AG T S
Sbjct: 262 GRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYS 321
Query: 243 GNPLAMTAGIHTLKRLKEPG 262
GNPLA A + L L+E
Sbjct: 322 GNPLACAAALANLDILEEED 341
|
Length = 449 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 1e-28
Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 18/256 (7%)
Query: 38 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
LAE + + P F +G EA +++ARA TGR +I F G +HG ++
Sbjct: 88 LAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT--YMTM 145
Query: 96 AGSG-VA--TLGLPDSPG----VPKGATYETLTAPFNDVSALENLFENN--KGEIAAIIL 146
A +G VA +G PG VP + ++ + + A+E LF+++ ++AAII
Sbjct: 146 ALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ-DSLDAIERLFKSDIEAKQVAAIIF 204
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 205
EPV G GF + + AIRR+ E+G ++I DEV +GF R A +++ PDL T
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMT 264
Query: 206 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
+ K + GG+P+ G +IM+ AP G GT +GNPLA+ A L + + E
Sbjct: 265 MAKSLAGGMPLSGVVGNANIMDAPAPGG---LGGTYAGNPLAVAAAHAVLNIIDKESLCE 321
Query: 266 YLNKITGELTQGIIDA 281
N++ L +IDA
Sbjct: 322 RANQLGQRLKNTLIDA 337
|
Length = 421 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 3e-28
Identities = 73/211 (34%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 113
F NSG EA +++AR TG++ II F+ +HG + G G GVP
Sbjct: 89 FCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGF--GDGVP- 145
Query: 114 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173
+Y A FND+++++ L N AA++LE V G SG + DF+ A+ +E
Sbjct: 146 HFSY----AIFNDLNSVKALVNKNT---AAVMLELVQGESGVLPADKDFVKALADYCQET 198
Query: 174 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 232
G LLI DEV TG R A E++G+ PD+ TL K + G+PVGA + + A
Sbjct: 199 GILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANGVPVGAMLAKSSL----GGA 254
Query: 233 -GPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262
G T GN L+M A TL + G
Sbjct: 255 FGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285
|
Length = 375 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-28
Identities = 78/217 (35%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 50 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109
E V NSGTEA L+ AR +TGR+ II +HG T+G +
Sbjct: 82 EYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR-------------TMGALSAT 128
Query: 110 GVPK-GATYETLTA-----PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
PK +E L PFNDV A + E E AA+I EP+ G G + K +F+
Sbjct: 129 WKPKYREDFEPLVPGFKHIPFNDVEAAK---EAITKETAAVIFEPIQGEGGIVPAKEEFV 185
Query: 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRR 223
+R +T++ GALLI DEV +G R A E++ V PD+ T+GK IG G+PV
Sbjct: 186 KTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNGVPVSLTLTNF 245
Query: 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
D+ G T GNPLA A TL+ L+
Sbjct: 246 DV-----ERGK--HGSTFGGNPLACKAVAVTLRILRR 275
|
Length = 364 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 79/230 (34%), Positives = 114/230 (49%), Gaps = 41/230 (17%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD----------PFLVKAGSGVATLGL 105
NSG EA +++AR++TGR+ ++ F+ YHG + P+ K+G G
Sbjct: 124 NSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPY--KSGFG------ 175
Query: 106 PDSPGVPKGATYET-LTAPFNDVSALEN-----------LFENNKG--EIAAIILEPVVG 151
P +P V Y ++ P+ D L + E G +AA+I+EP+ G
Sbjct: 176 PFAPEV-----YRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQG 230
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKII 210
GFI P FL A+ +ENG + I DEV TGF R A E+ G+ PDL T K I
Sbjct: 231 EGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGI 290
Query: 211 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
GGLP+ A GR +IM+ P G GT GNP+A A + ++ ++E
Sbjct: 291 AGGLPLSAVTGRAEIMDAPHPGG---LGGTYGGNPVACAAALAAIETIEE 337
|
Length = 443 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 71/232 (30%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG---VPKGATYETLTAPFNDV-- 127
G+ R + F YHG D F + + D G + + +E + P
Sbjct: 121 PGKTRFLAFRNGYHG--DTF--------GAMSVGDVGGFHALFEPLLFEVVFIPAPPCYR 170
Query: 128 ------------SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENG 174
+ALE L E + EIAA I+EP+V G G P++L +R + E G
Sbjct: 171 CWDPDDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYG 230
Query: 175 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV--- 229
LLI DE+ TGF R A E+ GVTPD+ L K + GG LP+ A +I E
Sbjct: 231 VLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSD 290
Query: 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281
T +GNPLA A + +L L+E E + +I +L G+
Sbjct: 291 DEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPL 342
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 73/209 (34%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 50 EMVRFVNSGTEACMGVLRLAR--AFT----GRERIIKFEGCYHGHADPFLVKAGSGVATL 103
E V F NSG EA +LAR A + II F +HG F V G
Sbjct: 98 ERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRT-LFTVSVG------ 150
Query: 104 GLPD-SPG---VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159
G P S G P T+ PFND++A++ + +++ A+++EP+ G G I
Sbjct: 151 GQPKYSDGFGPKPADITH----VPFNDLAAVKAVIDDHT---CAVVVEPIQGEGGVIPAT 203
Query: 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 218
P+FL +R + ++ ALLIFDEV TG R A ++GVTPD+ T K +GGG P+GA
Sbjct: 204 PEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPIGA 263
Query: 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247
+I T GNPLA
Sbjct: 264 MLTTAEIASHFKVG---THGSTYGGNPLA 289
|
Length = 403 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-27
Identities = 74/225 (32%), Positives = 105/225 (46%), Gaps = 37/225 (16%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADP 91
LA+ +I A + + V F NSG EA L+LAR + + + I+ F+ +HG
Sbjct: 86 LAKKLIDATFA-DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT-L 143
Query: 92 FLVKAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 147
F V AG G P D +P + A +ND+++ L ++ A+I+E
Sbjct: 144 FTVSAG------GQPKYSQDFAPLPPDIRH----AAYNDLNSASALIDDQT---CAVIVE 190
Query: 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 206
P+ G G I FL +R + + ALLIFDEV TG R A ++GVTPD+ T
Sbjct: 191 PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTT 250
Query: 207 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 247
K +GGG P+GA M + G T GNPLA
Sbjct: 251 AKALGGGFPIGA-------MLTTEKCASVMTVGTHGTTYGGNPLA 288
|
Length = 406 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 41/251 (16%)
Query: 54 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD----------PFLVKAGSGVATL 103
F+NSG EA +++AR +T R+ II F +HG P+ K G G
Sbjct: 120 FLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPY--KFGFG---- 173
Query: 104 GLPDSPGV-----------PKGATYETLTAPFNDVSALENLF--ENNKGEIAAIILEPVV 150
P +P V P+G T E + +N F E IAA+++EPV
Sbjct: 174 --PFAPEVYKAPFPYEYRRPEGLTEEQYDDFM--IEEFKNFFISEVAPETIAAVVMEPVQ 229
Query: 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 209
G GFI P F+ +R I E+G L + DE+ TGF R A E+F V PDL T+ K
Sbjct: 230 GEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKS 289
Query: 210 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 269
+G G+P+ GR++IM+ AP G + GT +G+PL A + L +++ E LN
Sbjct: 290 LGAGVPISGVIGRKEIMDESAP-GEL--GGTYAGSPLGCAAALAVLDIIEK----ENLND 342
Query: 270 ITGELTQGIID 280
EL + +++
Sbjct: 343 RAIELGKVVMN 353
|
Length = 451 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 88/263 (33%), Positives = 125/263 (47%), Gaps = 45/263 (17%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG--- 87
LAE + P ++ V F NSG+E+ L++A A+ R R+I E YHG
Sbjct: 97 LAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGF 156
Query: 88 ----------HADPFLVKAGSGV----ATLGLPD---SPGVPK-GATYETLTAPFNDVSA 129
+ F GV TL LP+ S G P+ GA D
Sbjct: 157 GGISVGGIVNNRKMFGG-LLPGVDHLPHTLDLPENAFSKGQPEHGAE-------LAD--D 206
Query: 130 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
LE L + IAA+I+EP+ G++G + P +L +R I ++G LLIFDEV+TGF R
Sbjct: 207 LERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGR 266
Query: 188 LAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPM--YQAGTLS 242
L A E FGVTPD+ T K + G +P+GA +I + M P + + T S
Sbjct: 267 LGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYS 326
Query: 243 GNPLAMTAGIHTLKRLKEPGTYE 265
+P+A AG+ TL +E +E
Sbjct: 327 AHPVACAAGLATLDIYREEDLFE 349
|
Length = 445 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 80/236 (33%), Positives = 113/236 (47%), Gaps = 17/236 (7%)
Query: 34 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHA 89
L +LA+ + + P ++ F NSGTE+ L+LA+A+ G+ I G +HG +
Sbjct: 118 LRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177
Query: 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIIL 146
L + + P P +P G + F D+ A+ K ++AAIIL
Sbjct: 178 LGAL--SATAKPAFRKPFMPLLP-GFHH----VAFGDIEAMLKALNECKKTGDDVAAIIL 230
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 205
EP+ G G I P +L A+R + E GALLI DEV TG R A E+ GV PD+
Sbjct: 231 EPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC 290
Query: 206 LGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
L K +GGG +P+GA + V P T GNPLA A + T+ L E
Sbjct: 291 LAKALGGGVMPIGATIATEAVFS-VLFDNPFLHTTTFGGNPLACAAALATINELLE 345
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 70/209 (33%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 50 EMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATL 103
+ V F NSG EA L+LAR + + I+ F+ +HG F V G
Sbjct: 93 DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRT-LFTVSVG------ 145
Query: 104 GLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159
G P +P G + AP+ND++A + L + A+I+EP+ G G +
Sbjct: 146 GQPKYSQGFAPLPGGIKH----APYNDLAAAKALISDKT---CAVIVEPIQGEGGVVPAD 198
Query: 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 218
P FL +R + + ALLIFDEV TG R A ++GVTPD+ T K +GGG P+GA
Sbjct: 199 PAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGA 258
Query: 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247
+I + T GNPLA
Sbjct: 259 MLTTTEIAAHLKVGT---HGTTYGGNPLA 284
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 24/237 (10%)
Query: 50 EMVRFVNSGTEACMGVLRLARAFTGRE---------RIIKFEGCYHGHADPFLVKAGSGV 100
+MV +N+G E ++LAR + G E I+ GC+HG + +
Sbjct: 133 DMVLPMNTGAEGVETAIKLARKW-GYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNE 191
Query: 101 ATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159
AT G P PG K F D+ ALE +FE + IAA + EP+ G +G + P
Sbjct: 192 ATRGFGPLLPGHLK--------VDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPP 243
Query: 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 217
+L A+R + ++ L+I DE+ TG R A ++ V PD+ LGK +GGG +PV
Sbjct: 244 DGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVS 303
Query: 218 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 274
A +D+M + P T GNPLA + L+ +++ E K+ EL
Sbjct: 304 AVLADKDVMLCI---KPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQEL 357
|
Length = 474 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 77/224 (34%), Positives = 105/224 (46%), Gaps = 30/224 (13%)
Query: 57 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------------SGVATLG 104
SG +A ++LA+ +TGR +I F G YHG L G GV +
Sbjct: 129 SGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMP 188
Query: 105 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI-------AAIILEPVVGNSGFIA 157
P P G E V AL FEN ++ AA+ILE + G G
Sbjct: 189 YPHEYRCPLGIGGEA------GVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNP 242
Query: 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPV 216
++L IR +T+++G LLI DEV GF R A E+ G+ PD+ + K +GGGLP+
Sbjct: 243 APVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPL 302
Query: 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
G +++ + P G GT GN LAM G+ TLK LKE
Sbjct: 303 AVLGIKKE-FDAWQPGG---HTGTFRGNQLAMATGLTTLKILKE 342
|
Length = 459 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 77/230 (33%), Positives = 105/230 (45%), Gaps = 42/230 (18%)
Query: 57 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS------------GVATL- 103
+GT+A L+L + TGR ++ F+G YHG + L G+ GV L
Sbjct: 135 TGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLP 194
Query: 104 ---------GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVG 151
GL GV Y LENL ++ + + AA+ILE V G
Sbjct: 195 YPYDYRCPFGLGGEAGVRANLHY------------LENLLDDPESGVVLPAAVILEVVQG 242
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKII 210
G I ++L +RRIT+E G LI DE+ +GF R A E+ G+ PD+ L K I
Sbjct: 243 EGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302
Query: 211 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
GG LP+ R + P AGT GN +AM AG TL+ +KE
Sbjct: 303 GGSLPLAVVVYREWLDTW----QPGAHAGTFRGNQMAMAAGSATLRYIKE 348
|
Length = 464 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 80/263 (30%), Positives = 111/263 (42%), Gaps = 52/263 (19%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRER--------------IIKFEGCYHGHADPFLVKAG 97
V F NSGTEA ++ AR + R R + F +HG
Sbjct: 75 VFFCNSGTEANEAAIKFARKYQ-RVRAPDKKDPAASSATEFVSFSNSFHGR--------- 124
Query: 98 SGVATLG-----------LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 146
TLG P P +P G T+ + ++ A L + KG+ AA+ +
Sbjct: 125 ----TLGALALTSKEQYRTPFEPLMP-GVTF----VEYGNLEAARKLIQ--KGKTAAVFV 173
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 205
EPV G G +FL +R + E GALL+FDEV G R Y A E +GV PD+ T
Sbjct: 174 EPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMT 233
Query: 206 LGKIIGGGLPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264
L K + GGLP+GA + E VA A P T +G PL A + L ++ +PG
Sbjct: 234 LAKPLAGGLPIGAV----LVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFL 289
Query: 265 EYLNKITGELTQGIIDAGKKAGH 287
+ K L + + H
Sbjct: 290 ASVAKKGEYLRELLRRKLGGNPH 312
|
Length = 382 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 26/224 (11%)
Query: 50 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVA 101
+ V +N+G EA ++LAR + + I+ +G +HG + + +
Sbjct: 95 DKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDS 154
Query: 102 TLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160
P PG K P+N++ ALE E++ + A I+EP+ G +G + P
Sbjct: 155 RTNFGPYVPGFKK--------IPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDD 206
Query: 161 DFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPV 216
+L +R + ++ LLI DE+ TG L G ++ V PD+ LGK + GG PV
Sbjct: 207 GYLKKVRELCTKHNVLLIADEIQTG--LGRTGKLLCVDHENVKPDIVLLGKALSGGVYPV 264
Query: 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
A D+M + P T GNPLA + L+ L+E
Sbjct: 265 SAVLADDDVMLTIKPGE---HGSTYGGNPLACAVAVAALEVLEE 305
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 77/239 (32%), Positives = 104/239 (43%), Gaps = 38/239 (15%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG----LPD 107
V F N G +A +R+AR TGR +++ YHG GS + G P+
Sbjct: 115 VFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHG-------GTGSAINLTGDPRRWPN 167
Query: 108 SPGVPKGATYETLTAPFNDVS-------------ALENL-----FENNKGEIAAIILEPV 149
G + PF S AL +L E IAAI+LE V
Sbjct: 168 DTGRAGVVHF---FGPFLYRSEFHATTEEEECERALAHLERVIELEG-PSTIAAILLESV 223
Query: 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 208
G +G + P P +L +R + +G +LI DEVM GF R A E+FGV PDL T K
Sbjct: 224 PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAK 283
Query: 209 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 265
+ G +P+G I A Y G T SG+PLA A + T+ ++E G E
Sbjct: 284 GVNSGYVPLGGVAISEAIAATFADR--PYPGGLTYSGHPLACAAAVATINAMEEEGIVE 340
|
Length = 451 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 68/220 (30%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 57 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------------SGVATLG 104
SG +A ++LA+ +TGR +I F G +HG L G GV +
Sbjct: 110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMP 169
Query: 105 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPD 161
P P G E + + EN E+ + + AA+ILE + G G +A +
Sbjct: 170 YPHEYRCPFGIGGEAGSN--ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSE 227
Query: 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 220
+L IR +T+++ LI DEV GF R A E+ G+ PD + K +GGGLP+
Sbjct: 228 WLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLL 287
Query: 221 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
+ + PAG GT GN LAM G L K+
Sbjct: 288 IAPE-FDAWQPAG---HTGTFRGNQLAMVTGTEALNYWKD 323
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 86/263 (32%), Positives = 122/263 (46%), Gaps = 41/263 (15%)
Query: 34 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG 87
L N +AE+ A + V F NSG+E+ L++A A+ R R+I E YHG
Sbjct: 94 LANRIAEI---APGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHG 150
Query: 88 HADPFLVKAGSGVATLG---------LPDSPGVPKGATYETLTAPFND---------VSA 129
+ G V + LP +P T + F+
Sbjct: 151 -----VGFGGISVGGIVPNRKAFGALLPGVDHLPH--TLDLARNAFSKGQPEHGAELADE 203
Query: 130 LENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
LE L ++ IAA+I+EPV G++G + P +L +R I ++G LLIFDEV+TGF R
Sbjct: 204 LERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGR 263
Query: 188 LAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAGPMYQAG-TLS 242
L A +YFGVTPDL T K + G +P+GA +I + AG + G T S
Sbjct: 264 LGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYS 323
Query: 243 GNPLAMTAGIHTLKRLKEPGTYE 265
G+PLA A + TL + G
Sbjct: 324 GHPLACAAALATLDLYEREGLLT 346
|
Length = 442 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 4e-21
Identities = 71/205 (34%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 73 TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGAT 116
GR R + G YHG HA P L + T P P G
Sbjct: 132 PGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE----QVTAPFP-----PDGYE 182
Query: 117 YETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGA 175
TL ALE L E + GEIAA I+EP+V G G + P +L +RRI +G
Sbjct: 183 QATL-------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGV 235
Query: 176 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---A 230
LLIFDE+ TGF R A E GV+PD+ L K + GG LP+ A +I E
Sbjct: 236 LLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDD 295
Query: 231 PAGPMYQAGTLSGNPLAMTAGIHTL 255
A + + + NPLA A +L
Sbjct: 296 RAKAFMHSPSYTANPLACAAANASL 320
|
Length = 423 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 6e-21
Identities = 70/222 (31%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 50 EMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAGSGVA 101
+MV +N+G EA ++ AR + + II EG +HG + +
Sbjct: 98 DMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY 157
Query: 102 TLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160
G P PG+ K P+ D+ AL+ N AA ++EP+ G +G P
Sbjct: 158 KRGFGPMLPGIKK--------IPYGDLEALKAAITPNT---AAFLVEPIQGEAGINIPPE 206
Query: 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA 218
FL A R + KE L I DE+ TG R A ++ VTPD+ LGK +GGG P+
Sbjct: 207 GFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISC 266
Query: 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
RDI+ + P T GNPLA I L+ L+E
Sbjct: 267 VAANRDILGVFTPGS---HGSTFGGNPLACAVSIAALEVLEE 305
|
Length = 396 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 1e-20
Identities = 80/255 (31%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR---AFTGR----ERIIKFEGCYHGHAD 90
LAE +++A E V NSGTEA ++L R + GR I+ F G +HG
Sbjct: 87 LAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGR-- 144
Query: 91 PFLVKAGSGVATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNKGEIAAI 144
TL + PK YE L FNDV ALE G++AA+
Sbjct: 145 -----------TLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG--GDVAAV 191
Query: 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 203
+LEP+ G G + P FL +R + ++ ALL+ DE+ G R A VTPD+
Sbjct: 192 MLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDI 251
Query: 204 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 263
TL K +GGG P+GA + E + T GNPLA L++L P
Sbjct: 252 VTLAKALGGGFPIGAMLAGPKVAETMQFGA---HGTTFGGNPLAAAVARVALRKLASPQI 308
Query: 264 YEYLNKITGELTQGI 278
+ + + L G+
Sbjct: 309 AANVARQSAALRAGL 323
|
Length = 408 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 78/240 (32%), Positives = 106/240 (44%), Gaps = 38/240 (15%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-------- 103
V VNSG+EA +RLA A +GR ++ YHG A V+T
Sbjct: 644 VFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT-----VATDAVSTSIADNPQAL 698
Query: 104 -GLPD------SPGVPKGATYETLTAP--FNDVSA-LENLFENNKGEIAAIILEPVVGNS 153
PD SP +G +A DV A LE L + +G +A I EPV GN+
Sbjct: 699 ETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG-LAGFICEPVYGNA 757
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------GVTPDLTTLG 207
G IA P +L + + G + I DEV G YG YF GV PD+ T+
Sbjct: 758 GGIALPPGYLQQVYAAVRARGGVCIADEVQVG----YGRLGHYFWGFEQQGVVPDIITMA 813
Query: 208 KIIGGGLPVGAYGGRRDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266
K +G G P+GA RR+I E + G + G G+P++ G+ L L+E E
Sbjct: 814 KGMGNGHPLGAVITRREIAEALEAEGYFFSSTG---GSPVSCRIGMAVLDVLREEKLQEN 870
|
Length = 972 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 72/239 (30%), Positives = 104/239 (43%), Gaps = 30/239 (12%)
Query: 39 AEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH--------A 89
AE + + +P + + FVNSG+EA LRLARA TG+ I + YHG
Sbjct: 669 AERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSP 728
Query: 90 DPFLVKAGSG----VATLGLPDS-------PGVPKGATYETLTAPFNDVSALENLFENNK 138
F K G G V +PDS P G + A + + +
Sbjct: 729 YKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAE-----QIAAMAAKGR 783
Query: 139 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGGAQEY 196
G A I E + +G I +L + + + G + I DEV GF R+ ++ A E
Sbjct: 784 G-PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFET 842
Query: 197 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 255
GV PD+ T+GK IG G P+GA R+I + + M T GNP++ G+ L
Sbjct: 843 QGVVPDIVTMGKPIGNGHPMGAVVTTREIAD--SFDNGMEYFNTFGGNPVSCAIGLAVL 899
|
Length = 1013 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 76/263 (28%), Positives = 114/263 (43%), Gaps = 31/263 (11%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHG--- 87
LA+ ++ +P S+ + F +SG+ A +++A + R + YHG
Sbjct: 92 LAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTW 151
Query: 88 HA----DPFLVKAGSGVATLGLP-----DSPGVPKGATYETLTAPFNDVSALENLFENNK 138
HA DP V G+ LP P + G + + L++L E
Sbjct: 152 HAMSVCDP--VTGMHGLFNHSLPVQYFLPQPSIKFGEEWND-----EAIEPLQDLLEQKG 204
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+ILEPVV G G P +L R + + G LLIFDE+ TGF R A E+
Sbjct: 205 DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEH 264
Query: 197 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV--APAGPMYQAGTLSGNPLAMTAGIH 253
GV PD+ +GK + GG L + A I + + A T NPLA
Sbjct: 265 AGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAE 324
Query: 254 TLKRLKEPGTYEYLNKITGELTQ 276
+++ L E + + +I +L Q
Sbjct: 325 SIRLLLESPWQQNIQRIEAQLKQ 347
|
Length = 429 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 73/254 (28%), Positives = 102/254 (40%), Gaps = 56/254 (22%)
Query: 54 FVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG--- 104
FVNSG+EA +++A R G+ +I+ YHG T+G
Sbjct: 96 FVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHG-------------ITMGALS 142
Query: 105 --------------LPDSPGVPKGATY---ETLTAPFNDVSA---LENLFENNKGE-IAA 143
L D P + Y P ++ LE E E IAA
Sbjct: 143 MSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAA 202
Query: 144 IILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 201
I EP++G +G + P + I+ I L I DEVMTG R A E++GV P
Sbjct: 203 FIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEP 262
Query: 202 DLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGI------- 252
D+ TLGK +G G P+ A +ME + +G TLS NPL+ +
Sbjct: 263 DIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYME 322
Query: 253 -HTL-KRLKEPGTY 264
H L ++ E G Y
Sbjct: 323 KHNLPEKAAEKGEY 336
|
Length = 447 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 3e-17
Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 38 LAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA------ 89
+AE + P IE V F SG++A +++++ T R I+ F G YHG
Sbjct: 101 VAEKLAEISP-IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSV 159
Query: 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETL------TAPFNDVSALENLFEN------- 136
F G + L +P+ +P Y P ++ + EN
Sbjct: 160 AAFQSSQKRGFSPL-MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVV 218
Query: 137 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 195
E+AA+ EP+ G++G + P +F ++++ E+G LL+ DEV TG R A E
Sbjct: 219 PPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASE 278
Query: 196 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 255
+F V PDL GK + G+ + GR+++M++ + + + T + NP+ A TL
Sbjct: 279 WFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTSGSALL----TPAANPVISAAAEATL 334
Query: 256 KRLKE 260
+ ++E
Sbjct: 335 EIIEE 339
|
Length = 457 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 75/261 (28%), Positives = 104/261 (39%), Gaps = 49/261 (18%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LA+ +++A P +E V FV+ G+EA L+LAR + R I YHG+
Sbjct: 78 LADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGN-- 135
Query: 91 PFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE--------- 140
TLG L + + L + VS E GE
Sbjct: 136 -----------TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRL 184
Query: 141 ---------------IAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
+AA + E VVG +G + P P + IR + G LLI DEVM
Sbjct: 185 ADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC 244
Query: 185 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TL 241
G R A E GV PDL T+ K +G G P+GA I + +A +Q G T
Sbjct: 245 GMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTY 304
Query: 242 SGNPLAMTAGIHTLKRLKEPG 262
G+ A A + + + E G
Sbjct: 305 LGHATACAAALAVQRVIAEDG 325
|
Length = 443 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 125 NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 183
D++ L ++ EIAA+ILEP+V G G P++L +R++ G LLI DE+
Sbjct: 189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA 248
Query: 184 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAG 239
TGF R A E+ G+ PD+ LGK + GG + + A R++ E ++ AG
Sbjct: 249 TGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 240 TLSGNPLAMTAGIHTLKRLKE 260
T GNPLA +L L+
Sbjct: 309 TFMGNPLACAVANASLSLLES 329
|
Length = 428 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 30/240 (12%)
Query: 58 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGA 115
GT A L+LAR TGR ++ F +HG L G+ G+P S
Sbjct: 108 GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSR--M 165
Query: 116 TYET-LTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITK 171
Y+ L + ++ E L E++ + AA+ILE V G G ++L + ++ +
Sbjct: 166 PYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCR 225
Query: 172 ENGALLIFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLPVGAYGGRRDI 225
+ LLI D++ G G +F G+ PD+ L K I G GLP+
Sbjct: 226 RHDILLIVDDIQAG----CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLA-------- 273
Query: 226 MEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281
+ ++ P P GT GN LA L+ +E + E+ Q +D
Sbjct: 274 LTLIKPELDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR 333
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 51 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG------- 97
++ F NSG+EA ++AR + R + I YHG++ L G
Sbjct: 107 VIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYK 166
Query: 98 -----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVG 151
G + PD +P + + V ++ + E IAA+I+EP++
Sbjct: 167 YEPLAPGFLHVPPPDCYRMPGIESEDIYDLE--CVKEIDRVMTWELSETIAAVIMEPIIT 224
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-I 209
G + P D++ A++ I +++GALLI DEV+ GF R +GV PD+ T+ K I
Sbjct: 225 GGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGI 284
Query: 210 IGGGLPVGAYGGRRDIMEMVAPAGP---MYQAGTLSGNPLA 247
LP+ A +++I E G T GNP A
Sbjct: 285 TSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAA 325
|
Length = 451 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 68/230 (29%), Positives = 95/230 (41%), Gaps = 41/230 (17%)
Query: 55 VNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGH--------ADPFLVKAGS 98
+NSG EA ++ R + G+ II +HG DP + G
Sbjct: 104 MNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDP-DARGGF 162
Query: 99 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158
G P +PG PF D ALE N A ++EP+ G +G I P
Sbjct: 163 G------PFTPGFR--------VVPFGDAEALEAAITPNT---VAFLVEPIQGEAGVIIP 205
Query: 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PV 216
+ +R + N LI DE+ TG R A+E+ G+ D+T +GK + GG PV
Sbjct: 206 PAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPV 265
Query: 217 GAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 265
A +++ ++ P Q G T GNPLA LK L E G E
Sbjct: 266 SAVLSNSEVLGVLKPG----QHGSTFGGNPLACAVARAALKVLTEEGMIE 311
|
Length = 401 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 81/273 (29%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 38 LAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAFT---GRE---RIIKFEGCYHGHA 89
LA+ ++ + +M V F NSG+EA ++L + GR + I YHG
Sbjct: 138 LAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGST 197
Query: 90 DPFLVKAG-SGVATL----GLP-------DSP-----GVPKGATYETLTAPFNDVSALEN 132
L+ A SG+ L LP D P +P G T E + D LEN
Sbjct: 198 ---LISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLP-GETEEEFSTRLAD--NLEN 251
Query: 133 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 190
L E IAA I EPV+G G I P + I+ + K+ L I DEV+ F RL
Sbjct: 252 LILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT 311
Query: 191 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNP 245
+ + + PDL +L K + +P+GA +I +++ G T SG+P
Sbjct: 312 MFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHP 371
Query: 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
++ + LK KE E++NKI GI
Sbjct: 372 VSCAVALEALKIYKERNIPEHVNKIAPRFQDGI 404
|
Length = 504 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHAD 90
LAE +I VP ++ V + +SG A +++A + ++R + + YHG
Sbjct: 104 LAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT- 162
Query: 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV-----------------SALENL 133
+ A S V + L V +E + P+ LE L
Sbjct: 163 ---IGAVS-VGAIDLFHQ--VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEEL 216
Query: 134 FENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 191
+ EIAAII+EP+V G G I +L +R + + L I DEV TGF R
Sbjct: 217 LKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276
Query: 192 GAQEYFGVTPDLTTLGK-IIGGGLPVGA 218
A E+ VTPD+ T GK + GG LP+
Sbjct: 277 FACEHENVTPDIMTAGKGLTGGYLPIAI 304
|
Length = 460 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 58 GTEACMGVLRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAGSGVATLGLPDSP 109
GT A L+LAR TGR I+ F +HG + + G+GV L +
Sbjct: 112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHK-RQGAGVP---LNNVT 167
Query: 110 GVPKGATYETLTAP-FNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNA 165
+P Y+ + ++ LE L E++ + AA+I+E V G G ++L
Sbjct: 168 RMP----YDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223
Query: 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLP 215
+ ++ +++ LLI D++ G G +F G+TPD+ TL K I G GLP
Sbjct: 224 LAKLCRKHDILLIVDDIQAG----CGRTGTFFSFERAGITPDIVTLSKSISGYGLP 275
|
Length = 425 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 30/236 (12%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPG 110
V F GT A L+LAR TG +++ +HG + + G G+ P G
Sbjct: 133 VLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAG 192
Query: 111 VPKGATYETLTAPFNDVSA--------LENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162
V + + F D LE + E +G I A I E V N+ P +
Sbjct: 193 VERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK-EGGIGAFIAEAV-RNTDVQVPSKAY 250
Query: 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYG 220
+R I ++ LLI DE+ G R + +G+ PD+ +GK +GGGL P+ A
Sbjct: 251 WKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAA-- 308
Query: 221 GRRDIMEMVAPAGPMYQAGTLS-------GNPLAMTAGIHTLKRLKEPGTYEYLNK 269
M+ A +S +PL A + T++ +++ G E +
Sbjct: 309 -------MITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKA 356
|
Length = 459 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 75/257 (29%), Positives = 110/257 (42%), Gaps = 43/257 (16%)
Query: 38 LAEMVIS-AVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LA + A P V F NSG+EA VLR+ R + ++ II + YHG
Sbjct: 99 LAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGST- 157
Query: 91 PFLVKAGS----------------GVATLGLPDSPGVPKGATYETLTAPFNDVSA--LE- 131
V S G+ + P G T E F +A LE
Sbjct: 158 ---VAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEE----FGLAAARQLEA 210
Query: 132 ---NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
L +N +AA I EP+ G G I P + I+RI ++ LL+ DEV+ GF R
Sbjct: 211 KILELGADN---VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGR 267
Query: 188 LAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNP 245
++FG+ PDL T+ K + G +P+GA G + E ++ G T SG+P
Sbjct: 268 TGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHP 327
Query: 246 LAMTAGIHTLKRLKEPG 262
+A + L+ L++ G
Sbjct: 328 VAAAVALANLRILRDEG 344
|
Length = 456 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR------ERIIKFEGCYHGHAD 90
LA + P + V G+ A LR + + II YHG
Sbjct: 100 LAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST- 158
Query: 91 PFLVKAGSGVAT--------------LGLPDSPGVPKGATYETLTAPFND--VSALENLF 134
+L + +G A L P+ P G + A F D V E+
Sbjct: 159 -YLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMS----EAAFCDFLVDEFEDKI 213
Query: 135 ENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYG 191
+ + IAA I EP++G+ G I P P + +R I + L I DEV+TGF RL +
Sbjct: 214 LSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF 273
Query: 192 GAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVA-PAGP--MYQAG-TLSGNPL 246
++ FG+ PD+ T K + G P+GA ++++++ P ++ G T SG+P+
Sbjct: 274 ASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPV 333
Query: 247 AMTAGI 252
A A +
Sbjct: 334 ACAAAL 339
|
Length = 466 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 74/277 (26%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 31 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEG 83
P ++E L+E++ S +P + NSG+EA ++R R + ++ +I
Sbjct: 98 PAVIE--LSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWN 155
Query: 84 CYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATY----ETLTAPFNDVS 128
YHG + LG +PD + + Y E A F +
Sbjct: 156 GYHG--------STLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRA 207
Query: 129 AL---ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
AL E + E +A + EP G G I P + I+RI ++ LL DEV+ G
Sbjct: 208 ALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGG 267
Query: 186 F-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TLS 242
F R A E+FG PD ++ K + G +P+G + I E + G ++ G T S
Sbjct: 268 FGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYS 327
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 279
G+P+A I LK L++ G + TG Q +
Sbjct: 328 GHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL 364
|
Length = 460 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 74/259 (28%), Positives = 101/259 (38%), Gaps = 30/259 (11%)
Query: 24 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 77
GT+ L L +M A + V F + G+++ L+LAR + R +
Sbjct: 81 DGTTHPRAIELSYELIDMF--APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTK 138
Query: 78 IIKFEGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND---------- 126
I + YHG H V + P PG T PF +
Sbjct: 139 FISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARIC 198
Query: 127 VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
LE IAA I EPV G G I P +F +R + +G LLI DEV+TG
Sbjct: 199 ARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTG 258
Query: 186 F-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA--YGGRRDIMEMVA----PAGPMYQ 237
F R +GV PD+ L K I G +P+GA R I + G +
Sbjct: 259 FGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNAR--IADAFEANADFGGAIMH 316
Query: 238 AGTLSGNPLAMTAGIHTLK 256
T SG+P+A A + TL
Sbjct: 317 GYTYSGHPVACAAALATLD 335
|
Length = 449 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 8e-13
Identities = 74/261 (28%), Positives = 108/261 (41%), Gaps = 48/261 (18%)
Query: 38 LAEMVISAVPS------IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCY 85
LAE +++ P + V + ++G+ L++A R R R I E Y
Sbjct: 112 LAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGY 171
Query: 86 HGHADPFLVKAGSGVATLGLPDSP---GVPKGATYETLTAPFNDV--------------- 127
HG + L + D P V E+L AP D
Sbjct: 172 HGET----------IGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQ 221
Query: 128 --SALENLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMT 184
AL+ LFE + GEI A+ILEP + +G + P +L R + +GA LI DE+ T
Sbjct: 222 AADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIAT 281
Query: 185 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAGPMYQAG 239
GF R A E GV PDL L K + GG LP+ A + + + + +
Sbjct: 282 GFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSH 341
Query: 240 TLSGNPLAMTAGIHTLKRLKE 260
+ +GNPLA A + TL +
Sbjct: 342 SYTGNPLACAAALATLDIFAD 362
|
Length = 472 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 30/244 (12%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LAE + + P + V F G+EA +LA+ + G+ ++I YHG
Sbjct: 100 LAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHG--T 157
Query: 91 PFLVKAGSGVATLGLPDSPGVP---------------KGATYETLTAPFNDVSALENLFE 135
A +G+ P P VP G E D +E E
Sbjct: 158 TQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAAD--RIEEAIE 215
Query: 136 NNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 193
+ +AA+ LEPV G P P + +R I LL+ DEV+ F RL
Sbjct: 216 FEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFG 275
Query: 194 QEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAG 251
E FG PD+ T K I G P+GA + E M+ G T G+P++
Sbjct: 276 CERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVA 335
Query: 252 IHTL 255
+ L
Sbjct: 336 LANL 339
|
Length = 460 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 127 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
++ FE + +IA I EP+ G G +P+F A+R + E+ ALLIFDEV TG
Sbjct: 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGV 271
Query: 187 RLAYGG---AQEYFGVTPDLTTLGK 208
L G A + GV PD+ GK
Sbjct: 272 GLT--GTAWAYQQLGVRPDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 36/267 (13%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHAD 90
L +++ ++ V + +SG+ + +++A ++ R R++ + YHG D
Sbjct: 88 LTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHG--D 145
Query: 91 PFLVKAGSGVATLGLPDSPG----VPKGATYETLTAPF--------NDVSALENLFENNK 138
F A + + D G + KG E + AP ++S E
Sbjct: 146 TF--------AAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLI 197
Query: 139 GE-IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 195
E +AAII+EP+V G G + +R + ++ LLI DE+ TGF R A
Sbjct: 198 DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATL 257
Query: 196 YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAG 251
GVTPD+ +GK + GG + A + ++++ G + T NPLA
Sbjct: 258 AAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVA 317
Query: 252 IHTLKRLKEPGTYEYLNKITGELTQGI 278
+L+ ++ + + +I EL G+
Sbjct: 318 HASLEIIETGMWRKQVKRIEAELIAGL 344
|
Length = 422 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGGAQEYFG 198
IAA I EPV+G G + P + AI+ + K+ LLI DEV+TGF RL + G+ Y G
Sbjct: 221 IAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHY-G 279
Query: 199 VTPDLTTLGKIIGGGLPVGAYG-------GRR--DIMEMVAPA-GPMYQAGTLSGNPLAM 248
+ PDL T+ K GL AY G + D++E + G + T SG+P+
Sbjct: 280 IEPDLITVAK----GL-TSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICA 334
Query: 249 TAGIHTLKRLKEPG 262
A + L L+
Sbjct: 335 AAALANLDILEREN 348
|
Length = 461 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL-AYGG 192
F +IA I EP+ G G +P+FL A+R + E+ ALLIFDEV TG L
Sbjct: 212 FAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW 271
Query: 193 AQEYFGVTPDLTTLGK 208
A + GV PD+ GK
Sbjct: 272 AYQQLGVQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 77/273 (28%), Positives = 111/273 (40%), Gaps = 43/273 (15%)
Query: 39 AEMVISAVPSIEMVRFVNSGTEACMGVLRL------ARAFTGRERIIKFEGCYHGHADPF 92
A++ A S+ V F G++A +R A +++ I E YHG +
Sbjct: 97 AKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS--- 153
Query: 93 LVKAGSGVATL-------GLP-------DSPGV---PKGATYETLTAPFNDVSALENLFE 135
G+G+ L LP SP P G + + A V+AL
Sbjct: 154 --SVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA--SVAALRAKVA 209
Query: 136 NNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 193
+ +AA EP+ G+ G I P +L A+R +E G L + DEV+TGF R A
Sbjct: 210 ELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFA 269
Query: 194 QEYFGVTPDLTTLGK-IIGGGLPVGA-------YGGRRDIMEMVAPAGPMYQAGTLSGNP 245
E GV PDL T+ K + G +P+GA Y G D AP G Y T S +P
Sbjct: 270 CEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGY---TYSAHP 326
Query: 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
++ G+ L+ E G K G+
Sbjct: 327 VSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL 359
|
Length = 459 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 28/208 (13%)
Query: 70 RAFTGRERIIKFEGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPK 113
R + + YHG DP L++ VA+ PD+ G
Sbjct: 141 RGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDP-LIRHAHVVAS---PDARGARP 196
Query: 114 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKE 172
G T + A ++ + LF G+IAA+I+EP+V +G P +L +R +
Sbjct: 197 GETAADVAA--RALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDR 254
Query: 173 NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV- 229
G LI DE+ G R A E GV PD L K I GG LP+ R I
Sbjct: 255 YGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFY 314
Query: 230 --APAGPMYQAGTLSGNPLAMTAGIHTL 255
+ + +GNPLA A + TL
Sbjct: 315 DDDVTRGFLHSHSYTGNPLACRAALATL 342
|
Length = 453 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 51/261 (19%)
Query: 38 LAEMVISAVPSIEM--VRFVNSGTEACMGVLRL------ARAFTGRERIIKFEGCYHGHA 89
LAE +++ P + M V F NSG+EA V++L A +++II + YHG
Sbjct: 97 LAEKLVAMAP-VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHG-- 153
Query: 90 DPFLVKAGSGVATLGLPDS--------PGV------------PKGATYETLTAPFNDVSA 129
V S T GLP++ + G + E +
Sbjct: 154 ----VTIASASLT-GLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLAN--E 206
Query: 130 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
LE L + IAA I EPV+G G I P + I+ + ++ LL+ DEV+ GF R
Sbjct: 207 LEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGR 266
Query: 188 LAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA-------YGGRRDIMEMVAPAGPMYQAG 239
E FG+ PD+ + K + P+ A Y D + G +
Sbjct: 267 TGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGF--- 323
Query: 240 TLSGNPLAMTAGIHTLKRLKE 260
T SG+P+A + L ++E
Sbjct: 324 TASGHPVAAAVALENLAIIEE 344
|
Length = 460 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 90 DPFLVKAGSGVATLGLP---DSPGVPKGATYETLTAPFN---DVSALENLF--------- 134
DP V +G + LP S + T+E+ F+ D + L +
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLD 574
Query: 135 ----ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 188
G IAA+I+EPV+ G G + P F A+ ++ + +IFDEV TG RL
Sbjct: 575 EYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRL 634
Query: 189 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--- 244
A E G PD+ K++ GGL P+ A ++ E A GP L G+
Sbjct: 635 GVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFE--AFRGPSKLDALLHGHSYT 692
Query: 245 --PLAMTAGIHTLKRLKEPGT 263
P+ A L+ K+P T
Sbjct: 693 AHPMGCAAAAKALQWYKDPST 713
|
Length = 817 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 106 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLN 164
PD P+G ++E + + +E + EIAA+I+EP++ G G P +L
Sbjct: 182 PDCYLRPEGMSWEEHSR--RMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLK 239
Query: 165 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGR 222
+R G LI DE+ GF R A E G+ PD L K + GG LP+ A
Sbjct: 240 LLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAA---- 295
Query: 223 RDIMEMVAPAGPMYQA-----GTL---------SGNPLAMTAGIHTLKRLKE 260
V +YQA TL +GNPLA A + TL ++
Sbjct: 296 ------VLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ 341
|
Length = 466 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 73/349 (20%), Positives = 121/349 (34%), Gaps = 72/349 (20%)
Query: 51 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSP 109
R ++ ++ + F G+E + F Y A GV +TL
Sbjct: 37 GSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYA---------ANDGVLSTLAGKGDL 87
Query: 110 -------------GVPKGATYETLTAPFNDVSALENLFENNKGEIAA--IILEPVVGNSG 154
G+ + + + ND+ LE L + I+ E V G
Sbjct: 88 IISDSLNHASIIDGI-RLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146
Query: 155 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFGVTPDLT-----TLGK 208
IAP L + + K+ GA+L DE G +G E FG D TLGK
Sbjct: 147 DIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGK 202
Query: 209 IIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEY 266
G VG Y G +++++ + + T S P A + L+ L+ P E
Sbjct: 203 AFGA---VGGYIAGSKELIDYLRSYARGFIFST-SLPPAVAAAALAALEVLQGGPERRER 258
Query: 267 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN--FEDAKKSETTKFARF 324
L + L +G+ + G G + + +D K+ F
Sbjct: 259 LQENVRYLRRGLKELGFPVGGSPS--------------HIIPPLIGDDPAKAV-----AF 299
Query: 325 YRGMLEEGVYFAPSQFEAG--------FT-SLAHSSDDIQHTITAAEKV 364
+LE G+Y ++ + S AH+ +DI + A ++V
Sbjct: 300 SDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 125 NDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181
ND+ LE L E N I+ E V G IAP L + + ++ GALL DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208
Query: 182 V-MTGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 233
G G G E+FG+ P+ + TLGK +G G Y G +++ +
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRA 265
Query: 234 PMYQAGTLSGNPLAMTAGIHTLKRLKE 260
+ T + P A + L+ L+E
Sbjct: 266 RPFIFST-ALPPAVAAAALAALRILEE 291
|
Length = 388 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 106
P + FV SGT A L + +I + AG
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAG--------A 64
Query: 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166
VP DV+ LE L K +A I++ P + G + P L I
Sbjct: 65 KPVPVPVDDAGY----GGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVP----LKEI 114
Query: 167 RRITKENGALLIFDEVMTGFRLAYGGAQEYFG 198
R+I KE G LL+ D G G G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190
E+L + +AAII+EP+ G PDF +R ITK++ I DEV TG
Sbjct: 242 EDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG----- 296
Query: 191 GG------AQEYFGVT--PDLTTLGK 208
G A E++ + PD+ T K
Sbjct: 297 VGATGKFWAHEHWNLDDPPDMVTFSK 322
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 62/242 (25%)
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTPDLT----TLG 207
G IAP L+ I + + AL++ DE TGF G G+ E GV + TLG
Sbjct: 184 GVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLG 239
Query: 208 KIIGGGLPVGAY-GGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-Y 264
K +GG G + R++++E++ + P + +L P + A I L+ L+
Sbjct: 240 KALGGAS--GGFTTARKEVVELLRQRSRPYLFSNSLP--PAVVGASIKVLEMLEASNELR 295
Query: 265 EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321
+ L T + + AG K A H I PV + DA ++
Sbjct: 296 DRLWANTRYFRERMEAAGFDIKPADHPII---------------PVMLY-DAVLAQ---- 335
Query: 322 ARFYRGMLEEGVYFAPSQFEAGF---------------TSLAHSSDDIQHTITAAEKVLR 366
RF R +LEEG+Y GF S AH+ + + + A ++ R
Sbjct: 336 -RFARRLLEEGIYV------TGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388
Query: 367 QI 368
++
Sbjct: 389 EL 390
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 67/243 (27%), Positives = 96/243 (39%), Gaps = 66/243 (27%)
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTP--DLT--TLG 207
G IAP L I + + AL++ D+ GF G G E+FGV D+ TLG
Sbjct: 188 GDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLG 243
Query: 208 KIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLA---MTAGIHTLKRLKEPGT 263
K +GG G Y GR+++++ + Y L N LA + A I L+ L+E
Sbjct: 244 KALGGA--SGGYTAGRKEVIDWLRQRSRPY----LFSNSLAPAIVAASIKVLELLEESDE 297
Query: 264 Y-EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319
+ L + +G+ AG H I I M G DAK +
Sbjct: 298 LRDRLWENARYFREGMTAAGFTLGPGEHPI----IPVMLG------------DAKLA--- 338
Query: 320 KFARFYRGMLEEGVYFAPSQFEAGFT---------------SLAHSSDDIQHTITAAEKV 364
F +LEEGVY GF+ S AH+ + + I A EKV
Sbjct: 339 --QEFADRLLEEGVYVI------GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390
Query: 365 LRQ 367
++
Sbjct: 391 GKE 393
|
Length = 397 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 123 PFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181
NDV LE L E N+GE +I+ + V G IAP L + + + GA L+ D+
Sbjct: 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDD 183
Query: 182 VM-TGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY 219
TG G G E+FG+ P+ + TL K +G GAY
Sbjct: 184 AHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAY 225
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 40/253 (15%)
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
D ALE + ++ +G +A + L + + KE+ LL+ DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185
Query: 185 GFRLAYGGAQEY---FGVTPD-----LTTLGKIIG-GGLPVGAYGGRRDIME-MVAPAGP 234
GF +G + + + K G G VG G ++ + A P
Sbjct: 186 GF--VFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 235 MYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 293
Y + A A L E + + + L G+ AG
Sbjct: 244 FY--SSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLS-----VLPS 296
Query: 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY-FAPSQFEAG----FTSL 347
+G F T + +LEE GVY S F T
Sbjct: 297 QAGF--FLLTGLDPEAALA-----------LAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 348 AHSSDDIQHTITA 360
+ ++++ + A
Sbjct: 344 GGTEEELEELLEA 356
|
Length = 357 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.98 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.97 | |
| PRK07324 | 373 | transaminase; Validated | 99.97 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.97 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.97 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.97 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.97 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| PLN02187 | 462 | rooty/superroot1 | 99.97 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.97 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.97 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.97 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.97 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.97 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.97 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.97 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.96 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.96 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.96 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.96 | |
| PLN02656 | 409 | tyrosine transaminase | 99.96 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.96 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.96 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.96 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.96 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.96 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.96 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.96 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.95 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.95 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.95 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.95 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.95 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.95 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.95 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.95 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.95 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.95 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.95 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.95 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.95 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.94 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.94 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.94 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.94 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.94 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.94 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.94 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN02231 | 534 | alanine transaminase | 99.94 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.94 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.94 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.94 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.93 | |
| PLN02397 | 423 | aspartate transaminase | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.93 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.93 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.93 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.93 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.93 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.93 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.92 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.92 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PLN02721 | 353 | threonine aldolase | 99.92 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.92 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.91 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.91 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.91 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.91 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.91 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.91 | |
| PLN02368 | 407 | alanine transaminase | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.91 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.9 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.9 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.9 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.9 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.9 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.89 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.89 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.89 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.89 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.89 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.88 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.88 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.87 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.87 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.87 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.87 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.86 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.86 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.86 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.86 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.85 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.85 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.85 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.84 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.84 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.84 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.84 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.83 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.83 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.82 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.82 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.82 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.82 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.82 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.82 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.82 | |
| PLN02651 | 364 | cysteine desulfurase | 99.82 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.81 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.81 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.81 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.81 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.81 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.81 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.81 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.8 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.8 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.8 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.8 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.8 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.8 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.8 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.79 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.79 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.79 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.79 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.78 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.78 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.77 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.77 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.76 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.76 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.75 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.75 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.75 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.75 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.74 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.73 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.73 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.73 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.73 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.73 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.73 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.73 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.72 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.72 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.71 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.71 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.71 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.71 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.7 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.7 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.7 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.69 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.69 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.69 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.68 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.68 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.66 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.65 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.65 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.63 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.63 | |
| PLN02263 | 470 | serine decarboxylase | 99.62 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.59 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.59 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.59 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.58 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.57 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.57 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.57 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.56 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.56 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.55 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.54 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.53 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.53 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.52 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.5 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.5 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.49 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.47 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.45 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.44 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.43 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.43 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.43 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.43 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.42 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.4 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.4 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.38 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.38 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.37 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.36 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.35 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.31 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.27 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.22 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.17 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.05 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.03 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.89 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.86 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.83 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.81 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.77 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.76 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.69 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.68 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.67 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.66 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.65 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.56 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.34 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.14 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.13 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.1 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.1 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.06 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.91 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.85 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.33 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.0 |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=396.71 Aligned_cols=339 Identities=32% Similarity=0.414 Sum_probs=306.1
Q ss_pred ceeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC---Cce
Q 017633 3 QLIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG---RER 77 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~---~~~ 77 (368)
+++++||.||.+++++.+++++..+ .-+.++...+|.+.|++..+..++|+|+|||+||++.|++++|.+.. +.+
T Consensus 52 av~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~ 131 (404)
T COG4992 52 AVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSK 131 (404)
T ss_pred eeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcE
Confidence 5799999999999999999998643 34678999999999999987689999999999999999999999976 678
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
||.+..+|||.+..++..++.+.....+. ...+.+.++|++|+++++++++ ++++++++||+++.+|...
T Consensus 132 Iia~~nsFHGRT~galS~t~~~ky~~~F~-------Pl~~g~~~vpfnDi~al~~ai~---~~taAvivEPIQGEgGV~~ 201 (404)
T COG4992 132 IIAFENSFHGRTLGALSATGQPKYRKGFG-------PLLPGFRHVPFNDIEALEAAID---EDTAAVIVEPIQGEGGVIP 201 (404)
T ss_pred EEEEcCCcCCccceeeeccCChhhccCCC-------CCCCCceecCCCCHHHHHHHhc---cCeEEEEEecccCCCCCCC
Confidence 99999999999999999998865433321 2223578899999999999999 4899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
++++|+++++++|++||++||.||+|+|+ |+|++|+++++++.||+++++|++|||+|+|.+++++...+.+. +..
T Consensus 202 ~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~---~G~ 278 (404)
T COG4992 202 APPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFT---PGD 278 (404)
T ss_pred CCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCC---CCc
Confidence 99999999999999999999999999999 99999999999999999999999999999999999966666666 677
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
|++||++||++++++.++++.+.++++.++.++..++++++|+++..+++....+++.|.|+++++...
T Consensus 279 HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~----------- 347 (404)
T COG4992 279 HGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEP----------- 347 (404)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCc-----------
Confidence 999999999999999999999999999999999999999999999988888889999999999998642
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+.++.+.|.++|+++.+.+...+| |++.++++|+++++++|++++..
T Consensus 348 --~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~ 398 (404)
T COG4992 348 --YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAA 398 (404)
T ss_pred --ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence 13578999999999999998877765 68999999999999999999864
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=382.01 Aligned_cols=363 Identities=57% Similarity=0.977 Sum_probs=337.5
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+.|||++|.|++++.++++++..|+.|++.+.++++.+.+.++..+.|.|++|||||...|++++|.++++++|+.|.+.
T Consensus 65 ~ilGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~ 144 (432)
T COG0001 65 LILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGC 144 (432)
T ss_pred cccCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 57999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|||+.+..+...+.+......|...+++......+..+|+||++.+++++++..+++++|++||+.+|.|.+.|+++|++
T Consensus 145 YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~ 224 (432)
T COG0001 145 YHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLE 224 (432)
T ss_pred CCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHH
Confidence 99999999998876665444588889988888899999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
+++++|++||++||.||+++|||.....+...+++.||+.+++|.+|||+|+|.+.+++++++.+...++.++.+|+++|
T Consensus 225 ~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgn 304 (432)
T COG0001 225 GLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGN 304 (432)
T ss_pred HHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCc
Confidence 99999999999999999999997666677888999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 245 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
+++++|+.++++.+.+ ++..+++.+..++|++.|++...+.+.+..+...+.++.+.+....+.++.+....+......
T Consensus 305 plamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~ 384 (432)
T COG0001 305 PLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAK 384 (432)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHH
Confidence 9999999999999977 458999999999999999999999999999999999999999887778888777666666778
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+...|+++||++.|+.....+++..+++++|++.++++++++++
T Consensus 385 ~~~~~l~~GV~l~ps~~ea~flS~ahte~di~~~~~a~~~~~~~ 428 (432)
T COG0001 385 FFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDRTLEAADEAFKE 428 (432)
T ss_pred HHHHHHhCCcccCCccccceeeecccCHHHHHHHHHHHHHHHHH
Confidence 88899999999999987777889999999999999999988865
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=376.35 Aligned_cols=357 Identities=30% Similarity=0.420 Sum_probs=303.1
Q ss_pred ceeccCCCcHHHHHHHHHHHHcCCC--C-CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 3 QLIILFPSYLQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~~~~~~~~--~-~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+.++||+||.|++++.+++++..+ + +.+.+...+++|+|.+..+ +.+.++|++||++|++.|+++++.++++..
T Consensus 66 ~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~ 145 (447)
T COG0160 66 AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPG 145 (447)
T ss_pred chhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999998542 2 2334899999999999998 478999999999999999999999999999
Q ss_pred EEEEcCCCCCCchhhhhhcCCCcccc-CCC-CCCCCCCCCCCcccccCCC---------CHHHHHHHHHc---CCCCeEE
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATL-GLP-DSPGVPKGATYETLTAPFN---------DVSALENLFEN---NKGEIAA 143 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~---------d~~~le~~~~~---~~~~~~~ 143 (368)
||.+.++|||.+..++.+++....+. .+. ...++.+...+..+..|+. ..+.+++.+.. .+.++++
T Consensus 146 viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAa 225 (447)
T COG0160 146 VIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAA 225 (447)
T ss_pred EEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeE
Confidence 99999999999999999998865442 222 2222444444444444432 24456664443 4568999
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeeh
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~ 222 (368)
+++||+++.+|.+.+|++|++++.++|++||+++|+||+|+|| |+|++|+++++++.||++|+||++++|+|+|.++.+
T Consensus 226 iI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r 305 (447)
T COG0160 226 IIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGR 305 (447)
T ss_pred EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEecc
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
+++.+ .. +..+.+||.+|+++++++++.++.++++++.++..+..++++++|.++..+++....+++.|.|+++++
T Consensus 306 ~ei~~-~~---~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~ 381 (447)
T COG0160 306 AEIMD-WP---PGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVEL 381 (447)
T ss_pred HHhcc-cC---CcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEE
Confidence 99988 44 455788999999999999999999998999999999999999999999999998889999999999999
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC--CCcc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....- .+.|+......+.+.++++|+.+..+| ...+ ++++.++++++++++++|++++.++
T Consensus 382 v~d~~-----t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 382 VKDRD-----TKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred ecCCC-----CCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 75320 011345667899999999999888877 4443 4799999999999999999998753
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=377.36 Aligned_cols=365 Identities=83% Similarity=1.318 Sum_probs=305.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|+|.+++.++++++..++.+++...+|++.+.+..++.++++|++||+||++.|+++++.++++++||.+.+
T Consensus 110 ~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g 189 (474)
T PLN02482 110 PAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEG 189 (474)
T ss_pred ccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 46899999999999999999987778888999999999999998789999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||++.......+.+......+...+++......+..++++|++++++.+.+++++++++++||+.+++|.+.++++|+
T Consensus 190 ~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl 269 (474)
T PLN02482 190 CYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFL 269 (474)
T ss_pred ccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHH
Confidence 99998765444433322111123334444444456677899999999999987767899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
+++.++|++||++||+||+++|||.|..++.+++++.||++++||++++|+++|.+++++++++.+...+...+++|+++
T Consensus 270 ~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~g 349 (474)
T PLN02482 270 EGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSG 349 (474)
T ss_pred HHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcch
Confidence 99999999999999999999999777777888899999999999999999999999999999998875445678899999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|++++++++++++.++++++.+++.++.++++++|+++..+.+.+......+.++++.+...++.++.+...++......
T Consensus 350 npl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~ 429 (474)
T PLN02482 350 NPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFAR 429 (474)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHH
Confidence 99999999999999988889999999999999999998877665544445556778877654433333322223334567
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.+.|+++||++.+.+.+...+++.++++||+++++++++++.++
T Consensus 430 ~~~~l~~~Gv~~~~~~~~~~~psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 430 FHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred HHHHHHHCCeEEeccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 899999999999987554446899999999999999999998764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=367.71 Aligned_cols=360 Identities=27% Similarity=0.317 Sum_probs=303.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|++.+++.+|+++..++ +.++++..+|+++|+++.| + .++|||++|||+|++.|+++++.|
T Consensus 55 ~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~ 134 (449)
T COG0161 55 CVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQ 134 (449)
T ss_pred HhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999996543 5567779999999999998 6 899999999999999999999877
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccc-cCC-CCCCCCCCCCCCcccccCC---------CCHHHHHHHHHcC-CCC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVAT-LGL-PDSPGVPKGATYETLTAPF---------NDVSALENLFENN-KGE 140 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~---------~d~~~le~~~~~~-~~~ 140 (368)
+++.++|....+|||.+..++..++....+ ..+ +......+...+..+..+. ...++||+.+.++ +++
T Consensus 135 p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~ 214 (449)
T COG0161 135 PQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPET 214 (449)
T ss_pred CcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCccc
Confidence 345669999999999999999999843322 222 2233332333333222221 1367888888875 489
Q ss_pred eEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccce
Q 017633 141 IAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 217 (368)
Q Consensus 141 ~~~~~~~~~~~~-~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG 217 (368)
++++++||+.+. +|++++|+.|++++.++|++||++||.||+.+|| |+|+.|+++++++.||+++++|++++| +|+|
T Consensus 215 IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~ 294 (449)
T COG0161 215 IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLS 294 (449)
T ss_pred EEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhH
Confidence 999999999988 9999999999999999999999999999999999 999999999999999999999999999 6999
Q ss_pred eeeehHHHHHHhcC--CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 218 AYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 218 ~v~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
.+++++++.+.+.. .+.+.|+.||++||++|+++++.++.++++++.++.++...++.++|..++...+.+..+++.|
T Consensus 295 a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~G 374 (449)
T COG0161 295 AVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLG 374 (449)
T ss_pred hHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccc
Confidence 99999999998775 4668999999999999999999999999999999999999999999999766667888999999
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.++++....-+- .+.+......+.+.++++|++++|.++.. +.|+++++++|++++++++++++++
T Consensus 375 li~~iElv~d~~t~----~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 375 LIGAIELVADKATK----TPFEARVGARVRAAALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred eEEEEEEecccccc----cchhhhHHHHHHHHHHHCCeEEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 99999998653211 00012235678899999999999997644 3579999999999999999999864
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=369.27 Aligned_cols=365 Identities=49% Similarity=0.876 Sum_probs=303.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++||++|+|.+++.++++++..++++++...+++++|.+..++.++++|++||++|++.|+++++.++++.+||.+.+
T Consensus 64 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~ 143 (428)
T PRK12389 64 PIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAG 143 (428)
T ss_pred ccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 56799999999999999999876667788999999999999988778999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||.+..++...+........+...++......++..++++|++.+++.+.++.++++++++||+.+++|.+.++++|+
T Consensus 144 ~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl 223 (428)
T PRK12389 144 CYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFL 223 (428)
T ss_pred CcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHH
Confidence 99999988888766432211112223333333456778888899999999987667899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||+++|+||+++|||.+..+..+++++.||++++||++++|+|+|.+++++++++.+...+...+++||++
T Consensus 224 ~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~g 303 (428)
T PRK12389 224 EAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAG 303 (428)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCcc
Confidence 99999999999999999999999666556677889999999999999999999999999999998864344567899999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|++++++++++++.++++++.++++++.+++++.|+++..+++.+..+...+.++.+.+......++...+.++......
T Consensus 304 npl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~ 383 (428)
T PRK12389 304 NPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGK 383 (428)
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHH
Confidence 99999999999999988889999999999999999998777776666644444778877643322221111122334568
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.+.|+++||.+.+.+.+.+.+++.++++|++++++++++++.++
T Consensus 384 ~~~~l~~~Gv~~~~~~~~~~~~~l~~t~e~id~~~~~l~~~l~~~ 428 (428)
T PRK12389 384 FFKLMLNQGINLAPSKYEAWFLTTAHTEEDIEETLEAVDRAFAQL 428 (428)
T ss_pred HHHHHHHCCcEeecCCCCCeeecCCCCHHHHHHHHHHHHHHHHhC
Confidence 889999999999987655567889999999999999999998764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=361.37 Aligned_cols=365 Identities=59% Similarity=0.969 Sum_probs=298.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|+|++++.+++++...++.+++...+|+++|++.++..+++++++||++|++.|+++++.++++++||.+.+
T Consensus 59 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~ 138 (423)
T TIGR00713 59 PLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEG 138 (423)
T ss_pred ccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcC
Confidence 46799999999999999999877677788889999999999998668999999999999999999999989999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||........++........+....+........+.++++|++++++.++++++++++++++|+++++|.+.++++|+
T Consensus 139 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l 218 (423)
T TIGR00713 139 CYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFL 218 (423)
T ss_pred CCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHH
Confidence 99998776666544322222223233333333445677888899999999986556899999999999999888889999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||+++|+||+|++|+.|..+..+.+++.||+++|||++++|+|+||+++++++++.+...+...+++|+++
T Consensus 219 ~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~ 298 (423)
T TIGR00713 219 AGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSG 298 (423)
T ss_pred HHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCC
Confidence 99999999999999999999999656556667788999999999999999999999999999998874334557789999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
++++++++.++++.++++++.+++++..+++++.|.+++.+++.+..+.+.|.++.+.+......++...+.++......
T Consensus 299 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 378 (423)
T TIGR00713 299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAK 378 (423)
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHH
Confidence 99999999999999987779999999999999999998888887777778899888877643221111111112223457
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.+.|+++||.+.+.+.+.+++...++++++++++++|++++.++
T Consensus 379 ~~~~l~~~Gv~v~~~~~~~~~l~~~~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 379 FFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred HHHHHHHCCeEEecCCccceeeECCCCHHHHHHHHHHHHHHHhhC
Confidence 889999999999876544556666689999999999999999764
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=355.15 Aligned_cols=362 Identities=37% Similarity=0.607 Sum_probs=296.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCC-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+++||++|+|.+++.+++++...++.+++...+|+++|.+..+. .+.++|++||++|++.|+++++.++++.+|+.+.
T Consensus 64 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~ 143 (433)
T PRK00615 64 SLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFL 143 (433)
T ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 568999999999999999998777777888999999999999874 5799999999999999999999999999999999
Q ss_pred CCCCCCc---hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 83 GCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
++|||.+ ...+...+..... .+...+ +.........++++|++++++.+.++.++++++++||+.+++|.+.++
T Consensus 144 ~~yHG~td~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~ 220 (433)
T PRK00615 144 GCYHGHADTLLQGISFSETSLDT--LTHLVD-TDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPK 220 (433)
T ss_pred CccCCCCcccCcccccCCCCcCc--CCCCCC-CCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCC
Confidence 9999987 3344333321100 000000 011122345567889999999998655679999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccc
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
++|+++|.++|++||+++|+||+|+|||.|..++.+++++.||++++||++++|+++|++++++++++.+...+..++++
T Consensus 221 ~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~ 300 (433)
T PRK00615 221 PGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAG 300 (433)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCC
Confidence 99999999999999999999999999977777888889999999999999998999999999999999886444456778
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
|++++++++++++++++.++++++.++++++.++++++|++...+.+.+......|.++.+++......++......+..
T Consensus 301 T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~ 380 (433)
T PRK00615 301 TLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIE 380 (433)
T ss_pred CCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHH
Confidence 99999999999999999998888999999999999999999877766544444578899999875433222222112233
Q ss_pred HHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 320 KFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 320 ~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....+...|.++||++.+...+...++..++++||++++++++++++++
T Consensus 381 ~~~~~~~~l~~~Gv~~~~~~~~~~~ls~~ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 381 AFQTFYQSAFSKGVYLSPSPFEASFLSSAHSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred HHHHHHHHHHHCCeeecCccccccceecCCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999988766667888999999999999999998763
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=355.72 Aligned_cols=341 Identities=26% Similarity=0.346 Sum_probs=289.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc---CCce
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRER 77 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~---~~~~ 77 (368)
++++||++|+|.+++.+++++.... +..++...+++++|++..+ +.+.++|++||+||++.|+++++.++ ++.+
T Consensus 86 ~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ 165 (442)
T TIGR03372 86 IFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFT 165 (442)
T ss_pred hhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcE
Confidence 5689999999999999999885433 3567889999999999987 45899999999999999999999884 6788
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g 154 (368)
||.+.++|||.+...+..++.......+. .....+..+|++|.+++++.+++ ++++++++++||+.+++|
T Consensus 166 ii~~~~~yHG~t~~~ls~t~~~~~~~~~~-------p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG 238 (442)
T TIGR03372 166 FIAASGAFHGKSLGALSATAKPAFRKPFM-------PLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGG 238 (442)
T ss_pred EEEECCCccCCCHHHhhccCCcccCCCCC-------CCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCC
Confidence 99999999999998888876532211111 11233567788899888888763 446799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~ 232 (368)
...+|++|+++++++|++||+++|+||+|+|| |+|..++++++++.||++++||++++| +|+|.+++++++++.+..
T Consensus 239 ~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~- 317 (442)
T TIGR03372 239 VILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFD- 317 (442)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhc-
Confidence 99999999999999999999999999999999 999988999999999999999999999 699999999999888742
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
+.+.+++||++|++++++++++++.++++++.++.++..+++++.|+++..+++ ....+++.|.++++++..
T Consensus 318 ~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~------- 390 (442)
T TIGR03372 318 NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRD------- 390 (442)
T ss_pred cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCC-------
Confidence 245678999999999999999999998888999999999999999999877776 556888999999999852
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHH
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l 365 (368)
......+.+.|+++||++.+.+. ..+ .|++.++++|+++++++|++++
T Consensus 391 ------~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 391 ------NEIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ------hHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 22346789999999999976532 233 4789999999999999999864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=355.83 Aligned_cols=343 Identities=25% Similarity=0.353 Sum_probs=291.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC---Cce
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG---RER 77 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~---~~~ 77 (368)
++++||++|+|.+++.+++++...+ +++++...+|+++|++..+ +.+.++|++||++|++.|+++++.+++ +.+
T Consensus 93 ~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ 172 (459)
T PRK11522 93 IFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFT 172 (459)
T ss_pred hhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcE
Confidence 5789999999999999999885433 3568889999999999987 478999999999999999999998874 568
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g 154 (368)
||.+.++|||.+...+..++.......+. .. .+.+..+|++|.+++++.+.. +.++++++++||+++++|
T Consensus 173 ii~~~~~yHG~t~~~ls~~~~~~~~~~~~--~~-----~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G 245 (459)
T PRK11522 173 FIATSGAFHGKSLGALSATAKSTFRKPFM--PL-----LPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGG 245 (459)
T ss_pred EEEecCCCCCCcHHHhhhcCCcccccCCC--CC-----CCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCC
Confidence 99999999999998888876543221111 11 124566788899999998863 345789999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~ 232 (368)
.+.+|++|++++.++|++||+++|+||+|+|| |+|..+.++++++.||++++||++++| +|+|.+++++++++.+..
T Consensus 246 ~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~- 324 (459)
T PRK11522 246 VILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD- 324 (459)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhcc-
Confidence 99999999999999999999999999999999 999988999999999999999999999 699999999998887652
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
+++.+++||++|++++++++++++.++++++.++++++.++++++|+++..+++ .+..+++.|.++++++..
T Consensus 325 ~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~------- 397 (459)
T PRK11522 325 NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVD------- 397 (459)
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecC-------
Confidence 245688999999999999999999998888999999999999999999877776 566888999999999852
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCC--CCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQ--FEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......+.+.|+++||.+.+.+ ... +.|++.++++|+++++++|++++.+
T Consensus 398 ------~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~ 451 (459)
T PRK11522 398 ------NEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA 451 (459)
T ss_pred ------chHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 2234678999999999998652 223 3478999999999999999998864
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=351.46 Aligned_cols=365 Identities=64% Similarity=1.034 Sum_probs=298.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
..++||++|++.+++.+++++...++++.+...+|++++++.+++.+.+++++||++|++.|+++++.++++++||.+++
T Consensus 61 ~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~ 140 (426)
T PRK00062 61 PMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEG 140 (426)
T ss_pred hhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46899999999999999998866556778889999999999887678999999999999999999998888899999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||.+.......+........+...+.........+.++++|++++++.+..++++++++++||+++++|.+.++++|+
T Consensus 141 ~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l 220 (426)
T PRK00062 141 CYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFL 220 (426)
T ss_pred ccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHH
Confidence 99999876666544322111111111111111123566778899999999976556899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||+++|+||+|+|++.|..+..+++++.||+.++||++++|+|+|++++++++++.+...+...+++|+++
T Consensus 221 ~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~ 300 (426)
T PRK00062 221 EGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG 300 (426)
T ss_pred HHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcC
Confidence 99999999999999999999998666666777889999999999999989999999999999998864444567788999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
++++++++.++++.++++++.++++++.++++++|+++..+++....+++.|.++.+.+....+......+.++......
T Consensus 301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 380 (426)
T PRK00062 301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFAR 380 (426)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHH
Confidence 99999999999999987789999999999999999998877887777889999999998753322111111122233468
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.+.|+++||.+.+.+.+.+++++.++++|+++++++|++++.++
T Consensus 381 i~~~l~~~Gv~v~~~~~~~~~~~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 381 FFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred HHHHHHHCCeEeecCCcCceeeeccCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999987666667788999999999999999998753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=354.52 Aligned_cols=364 Identities=23% Similarity=0.293 Sum_probs=291.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+++||++|+|.+++.++++++.. ..+.++...+|+++|.+..+ +.++++|++||++|++.|+++++.++++.+||.
T Consensus 64 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~ 143 (451)
T PRK06062 64 NTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLS 143 (451)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEE
Confidence 568999999999999999998543 34567889999999999997 478999999999999999999999999999999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC---CC-------HHHHHHHHHcC-CCCeEEEEEccc
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---ND-------VSALENLFENN-KGEIAAIILEPV 149 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d-------~~~le~~~~~~-~~~~~~~~~~~~ 149 (368)
+.++|||.+..++..++........+...++.....+..+..++ +| +++++++++.. +++++++++||+
T Consensus 144 ~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv 223 (451)
T PRK06062 144 AYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESV 223 (451)
T ss_pred EeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 99999999999888876543211111111221111111222222 23 67888888643 367999999999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-cceeeeehHHHHH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIME 227 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~v~~~~~~~~ 227 (368)
++++|.+.++++|+++++++|++||++||+||+++|| |+|..++++++++.||++++||++++|+ |+|.+++++++++
T Consensus 224 ~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~ 303 (451)
T PRK06062 224 PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAA 303 (451)
T ss_pred cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHH
Confidence 9999999999999999999999999999999999999 9998888999999999999999999995 9999999999998
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT-GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.+.. ..+.+++||++|++++++++++++.++++++.++..+.. +++++.|+++..+++.+..+.+.|.++++++....
T Consensus 304 ~~~~-~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~ 382 (451)
T PRK06062 304 TFAD-RPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADR 382 (451)
T ss_pred Hhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccc
Confidence 8863 234577899999999999999999998888999999998 69999999987777777789999999999986421
Q ss_pred C-cccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 307 V-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 307 ~-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
. ................+.+.|+++||++.+.+.. .+.+++.++++|++++++++++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 383 ETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred cccCCCcccchhhHHHHHHHHHHHHCCcEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 1 0000000001123567889999999998765322 234678999999999999999998653
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=323.86 Aligned_cols=352 Identities=27% Similarity=0.319 Sum_probs=305.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
..++||.+|+|.+++.+++....+ ..+.+++..++++.|.+.++ +.+.++|+|||+||+++|+++++.|++.-++|.
T Consensus 61 tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa 140 (442)
T KOG1404|consen 61 TVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIA 140 (442)
T ss_pred EEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEE
Confidence 568999999999999999977533 35678999999999999998 689999999999999999999999999999999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCC----------HHHHHHHHHc-CCCCeEEEEEcc
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFND----------VSALENLFEN-NKGEIAAIILEP 148 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----------~~~le~~~~~-~~~~~~~~~~~~ 148 (368)
+..+|||.+...+.+++.+..+..++.. .+..+...++.+..++.+ .+++++.+.. .+.+++++++|+
T Consensus 141 ~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEt 220 (442)
T KOG1404|consen 141 RRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAET 220 (442)
T ss_pred eeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeeh
Confidence 9999999999999999887776666665 366666677777766642 3566666653 456799999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+.+.+|++.+|+.|++++.++|+++|.++|.||+++|| |+|..+.++..++.||++|++|++|+|+++|.++.++++++
T Consensus 221 IqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~ 300 (442)
T KOG1404|consen 221 IQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIAD 300 (442)
T ss_pred hccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHH
Confidence 99999999999999999999999999999999999999 99998999999999999999999999999999999999999
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+.+. ..+++||++||++++++.++++.+.++.+.++......++++.|.++..+++.+-.+++.|.|+++++.+...
T Consensus 301 v~~~~--~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~ 378 (442)
T KOG1404|consen 301 VLNQK--SSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKS 378 (442)
T ss_pred HHHhc--cccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccC
Confidence 98853 2388999999999999999999999999999999999999999999999999888999999999999976543
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cc--ccccCCCHHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AG--FTSLAHSSDDIQHTITAA 361 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~--~~~~~~~~~~i~~~~~~l 361 (368)
..++|.......+-+.+++.|+.|.-++.. .+ .|++++|++|++-+++..
T Consensus 379 ----~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 379 ----EPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ----CCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 334455555677889999999999666422 23 368999999997777744
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=353.27 Aligned_cols=360 Identities=22% Similarity=0.242 Sum_probs=288.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|+|.+++.+++++... ++++++...+|+++|.+..+ +.++++|++||++|++.|+++++.+
T Consensus 57 ~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~ 136 (459)
T PRK05965 57 CVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGR 136 (459)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCC
Confidence 568999999999999999988542 24567888999999999997 6789999999999999999999987
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCC-CC--------HHHHHHHHHcC-CCCe
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF-ND--------VSALENLFENN-KGEI 141 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d--------~~~le~~~~~~-~~~~ 141 (368)
+++.+||.+.++|||.+..++..++.+.....+ +...+......+..+..+. +| ++++++.+.++ ++++
T Consensus 137 ~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~i 216 (459)
T PRK05965 137 PSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNV 216 (459)
T ss_pred CCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCce
Confidence 347789999999999998777776653222211 1111111000000111111 12 36788888753 3689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v 219 (368)
+++++||+.+++|.+.+|++|+++++++|++||++||+||+++|| |+|..++++++++.||+++++|++++| +|+|.+
T Consensus 217 AAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av 296 (459)
T PRK05965 217 AAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAV 296 (459)
T ss_pred EEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999 599999
Q ss_pred eehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 220 GGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 220 ~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
++++++++.+... +.+.+++||++|++++++++++++.++++++.++.++..+++++.|+++. +++.+..+++.|
T Consensus 297 ~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~G 375 (459)
T PRK05965 297 LMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLVGDVRGRG 375 (459)
T ss_pred EEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeecc
Confidence 9999998887532 13468899999999999999999999989999999999999999999874 567777899999
Q ss_pred ceEEEEeecCCC-cccchhcccccHHHHHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 GMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++++++..... ... ..+.......+.+.++++|+++.+.+... +.|++.++++|+++++++|++++.+
T Consensus 376 l~~gie~~~~~~~~~~---~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 376 LLGALELVADKATKTP---FDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred eEEEEEEeccccccCC---CCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999864211 000 00111235678889999999998866443 3578999999999999999999865
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=353.24 Aligned_cols=361 Identities=22% Similarity=0.290 Sum_probs=291.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc------CC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~------~~ 75 (368)
.+++||++|+|.+++.+++++...+ .++++...+|++.|.+..+..+.++|++||++|++.|+++++.++ ++
T Consensus 58 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r 137 (451)
T PRK07678 58 CVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHR 137 (451)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3679999999999999999986433 356788899999999998866799999999999999999999874 46
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCC------CC---HHHHHHHHH-cCCCCeEEE
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF------ND---VSALENLFE-NNKGEIAAI 144 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~d---~~~le~~~~-~~~~~~~~~ 144 (368)
.+||.+.++|||.+..++..++.......+ +...++.....+.....++ +| ++.+++.+. +++++++++
T Consensus 138 ~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAv 217 (451)
T PRK07678 138 YKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAV 217 (451)
T ss_pred cEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 789999999999999888887654332222 2222222222222333322 12 344677775 445789999
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeeh
Q 017633 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGR 222 (368)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~ 222 (368)
++||+.+++|.+.++++|+++++++|++||++||+||+++|| |+|+.+.++++++.||++++||++++| +|+|.++++
T Consensus 218 i~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~ 297 (451)
T PRK07678 218 IMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVK 297 (451)
T ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEc
Confidence 999999999999999999999999999999999999999999 999888889999999999999999988 699999999
Q ss_pred HHHHHHhcCC---CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 223 RDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 223 ~~~~~~~~~~---~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
+++++.+... +.+.+++||++|++++++++++++.++++++.++.++..+++++.|+++..+++.+..+.+.|.+++
T Consensus 298 ~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~ 377 (451)
T PRK07678 298 KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVG 377 (451)
T ss_pred HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEE
Confidence 9998887642 2346889999999999999999999988889999999999999999988778888888999999999
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------Cc--cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EA--GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~--~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+++...... ....+......+.+.|+++||++.+.+. .. +.+++.+|++|++++++++++++.++
T Consensus 378 i~~~~~~~~----~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 378 IELVNDKET----KEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EEEecCCcc----cCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 998643210 0011223457889999999999976431 22 34678999999999999999998764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=352.36 Aligned_cols=362 Identities=19% Similarity=0.199 Sum_probs=288.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|+|.+++.+++++..+ .+++++...+|++.|++..+ +.++++|++||++|++.|+++++.+
T Consensus 61 ~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~ 140 (461)
T PRK07482 61 CVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGR 140 (461)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999998642 24678899999999999997 5789999999999999999999866
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC----------CCCHHHHHHHHHc-CCCC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP----------FNDVSALENLFEN-NKGE 140 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~d~~~le~~~~~-~~~~ 140 (368)
+++.+||.+.++|||.+..++..++.......+ +...++.....+.....+ ..+++++++.+.+ ++++
T Consensus 141 ~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (461)
T PRK07482 141 PEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDT 220 (461)
T ss_pred CCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 246789999999999988877777653222111 111111111001110100 0146788888853 4568
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-ccee
Q 017633 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGA 218 (368)
Q Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~ 218 (368)
++++++||+.+++|.+.++++|+++|+++|++||+++|+||+++|| |+|..++++++++.||+++++|+++||+ |+|.
T Consensus 221 iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~a 300 (461)
T PRK07482 221 IAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSG 300 (461)
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccce
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999999995 9999
Q ss_pred eeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 219 YGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 219 v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
+++++++++.+... +...+++||++|++++++++++++.++++++.++.++..+++++.|+++..+++.+..+++.
T Consensus 301 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~ 380 (461)
T PRK07482 301 SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGV 380 (461)
T ss_pred eeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeec
Confidence 99999988877531 23468899999999999999999999989999999999999999999988888888899999
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC--CCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
|.++++++....... ....+.......+...|+++|+++.+. +.. .+.|++.++++|++++++++++++.+
T Consensus 381 Glm~giel~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 381 GMLAAVEFVADRDDR--TPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred eeEEEEEeccCCCcC--CCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999996422100 000011123467889999999998653 222 23468999999999999999999865
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=349.54 Aligned_cols=362 Identities=24% Similarity=0.266 Sum_probs=291.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC----CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhc----
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFT---- 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~---- 73 (368)
++++||++|+|.+++.+++++..++ +++++...+++++|.+..+ +.++++|++||++|++.|+++++.+.
T Consensus 53 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g 132 (449)
T PRK07481 53 NVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRG 132 (449)
T ss_pred hhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcC
Confidence 4679999999999999999885432 4678899999999999984 56899999999999999999999873
Q ss_pred --CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCC--CHHH--------HHHHHH-cCCC
Q 017633 74 --GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN--DVSA--------LENLFE-NNKG 139 (368)
Q Consensus 74 --~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--d~~~--------le~~~~-~~~~ 139 (368)
++.+||.+.++|||.+..++..++.......+ +...++.....+..+..+++ |.++ +|+.+. ++++
T Consensus 133 ~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~ 212 (449)
T PRK07481 133 QPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPD 212 (449)
T ss_pred CCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 56789999999999998888776654322211 22223332222233333444 4443 445554 3457
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccce
Q 017633 140 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 217 (368)
Q Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG 217 (368)
++++|++||+.+++|.+.++++|+++++++|++||+++|.||+++|| |+|..++++++++.||++++||++++| +|+|
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~ 292 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLG 292 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCce
Confidence 89999999999999999999999999999999999999999999999 999988899999999999999999999 5999
Q ss_pred eeeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 017633 218 AYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 218 ~v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
.+++++++++.+... +...+++|+++|++++++++++++.++++++.++.++..+++++.|+++..+++.+..+++
T Consensus 293 av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG 372 (449)
T PRK07481 293 ATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRG 372 (449)
T ss_pred EEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence 999999998887532 2346889999999999999999999988889999999999999999998777788889999
Q ss_pred ccceEEEEeecCC-CcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 294 ISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.|.++++++.... .... ..+.......+...|+++||++.+.+.. .+.+++.+|++|+++++++|++++.++
T Consensus 373 ~Glm~gi~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 373 KGLMLALDLVADKATREP---IDPSKGYANAVADVARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred cceEEEEEecccccccCC---CCchhHHHHHHHHHHHhCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999985321 1100 0001233567888999999999886533 245678999999999999999998764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=345.13 Aligned_cols=348 Identities=28% Similarity=0.363 Sum_probs=285.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++++.... .++++...++++++.+..++ .++++|++||++|++.|+++++.++++.+|
T Consensus 51 ~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~i 130 (425)
T PRK07495 51 VVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAV 130 (425)
T ss_pred hhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeE
Confidence 4679999999999999999885432 45678889999999999874 379999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCC----------CHHHHHHHHHc--CCCCeEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFEN--NKGEIAAII 145 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~~~~--~~~~~~~~~ 145 (368)
+.+.++|||.+...+..++.. .....+.+. ...+..+|.+ +++++++.+.+ +++++++++
T Consensus 131 i~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi 203 (425)
T PRK07495 131 IAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM-------MPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAII 203 (425)
T ss_pred EEECCCcCCccHHHhhhcCCCcccccCCCCC-------CCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEE
Confidence 999999999988777766532 111111110 0122333332 25566777763 346799999
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHH
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~ 224 (368)
+||+.+++|...+|++|+++|+++|++||+++|+||+|+|| +.|..++++.+++.||++++||++++|+|+|+++++++
T Consensus 204 ~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~ 283 (425)
T PRK07495 204 IEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAE 283 (425)
T ss_pred ECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCCccceEEEEcHH
Confidence 99999998888999999999999999999999999999999 88888888889999999999999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+++.+.. ..+++|+++++++++++.++++.++++++.++++++.++++++|+++..+++....+.+.|.++|+++..
T Consensus 284 i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~ 360 (425)
T PRK07495 284 IMDAPGP---GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFND 360 (425)
T ss_pred HHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEec
Confidence 9888763 3467899999999999999999998888999999999999999999877777777888999999999864
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
... ..++......+.+.++++|+++.+.+. .. +.|++.++++++++++++|++++.+
T Consensus 361 ~~~------~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~ 421 (425)
T PRK07495 361 ADS------GLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILE 421 (425)
T ss_pred CCC------CCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 211 112223456788999999999976432 33 3578999999999999999999865
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=345.77 Aligned_cols=340 Identities=28% Similarity=0.348 Sum_probs=285.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc------CC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~------~~ 75 (368)
++++||++|+|.+++.+++++... .+++++...+|+++|++..+ .+++++++||++|++.|+++++.+. ++
T Consensus 46 ~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~-~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r 124 (397)
T TIGR03246 46 VNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF-ADKVFFCNSGAEANEAALKLARRYALDKHGADK 124 (397)
T ss_pred hccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence 578999999999999999987432 24467888999999999874 4699999999999999999998773 67
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
++||.++++|||++...+..++.......+. .....+..++++|++++++.+. ++++++++||+++++|.
T Consensus 125 ~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epi~~~~G~ 194 (397)
T TIGR03246 125 SEIVAFKNSFHGRTLFTVSVGGQPKYSQGFA-------PLPGGIKHAPYNDLAAAKALIS---DKTCAVIVEPIQGEGGV 194 (397)
T ss_pred CEEEEECCCcCCccHHHHHhcCCcccccCCC-------CCCCceEEeCCCCHHHHHHHhc---cCeEEEEEecccCCCCC
Confidence 8899999999999887777766533221111 1123456788889999999996 47999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
..++++|+++|+++|++||+++|+||+|+|| +.|..++.+++++.||++++||++++|+|+|++++++++++.+..
T Consensus 195 ~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG~pigav~~~~~i~~~~~~--- 271 (397)
T TIGR03246 195 VPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKV--- 271 (397)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCCcceeEEEEcHHHHHhccC---
Confidence 9999999999999999999999999999999 888887778899999999999999989999999999999888863
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..+++|++++++++++++++++.++++++.++++++.++++++|+++..+.+....+++.|.++.+.+...
T Consensus 272 ~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~--------- 342 (397)
T TIGR03246 272 GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEA--------- 342 (397)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCc---------
Confidence 34678889999999999999998877889999999999999999998766666667778888888876421
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.......+++.|+++|+.+.+.+.+.++ +++.++++|+++++++|++++.++
T Consensus 343 --~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 343 --YQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred --hhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1124578999999999999887655555 589999999999999999998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=342.74 Aligned_cols=357 Identities=29% Similarity=0.409 Sum_probs=288.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|+|.+++.++++++..++.+++...+++|.+.+..+ .++++|++|||+|++.|+++++.++++++|+.+.+
T Consensus 86 ~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~-~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g 164 (453)
T PRK07046 86 GAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFG-LPYWQVATTATDANRFVLRWARAVTGRPKILVFNG 164 (453)
T ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 46799999999999999999877777889999999999999884 78999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhc--CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 84 CYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+|||.+...+... +.... .+...+.+......+..++++|++++++.+. .++++++++||+.+++|.+.++++
T Consensus 165 ~YHG~~d~~l~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~ 239 (453)
T PRK07046 165 CYHGTVDDVFVDLVDGRPVQ---RPGLLGQVHDLTATTRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPG 239 (453)
T ss_pred CCCCCcHHhHhhccCCCCCC---CCCCCCCCccccCceEeeCCCCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHH
Confidence 9999876544332 21111 1112222222234466788899999999995 357999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC------CCCc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP------AGPM 235 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~------~~~~ 235 (368)
|+++++++|++||+++|+||+++ |+.|......++++.||+++++|+++||+|+|.+++++++++.+.. .+..
T Consensus 240 fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~ 318 (453)
T PRK07046 240 FHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHS 318 (453)
T ss_pred HHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCc
Confidence 99999999999999999999998 6434334456789999999999999999999999999999888753 1234
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
.+++||++|++++++++++++.+.++++.+++.+..++++++|+++..+.+.+..+.+.|.++.+.+......++.+...
T Consensus 319 ~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~ 398 (453)
T PRK07046 319 GIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAA 398 (453)
T ss_pred eeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhc
Confidence 57789999999999999999999888899999999999999999988888888889999998888775433222222111
Q ss_pred c-ccHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 316 S-ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 316 ~-~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+ +......+...|+++||++.+.+. .++++..++++|++++++++++++.++
T Consensus 399 ~~~~~~~~~~~~~~~~~Gv~~~~~~~-~~~~~p~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 399 ALDPELEAALHLYLLNRGVLITPFHN-MMLVCPATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred ccCHHHHHHHHHHHHHCCCEEecccC-cEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 223356788889999999987542 334444699999999999999998753
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=347.72 Aligned_cols=362 Identities=18% Similarity=0.255 Sum_probs=290.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
..++||++|+|.+++.+++++... .++.++...+|+++|++..+ +.+.++|++||++|++.|+++++.+ +
T Consensus 58 ~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t 137 (466)
T PRK07030 58 VNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKP 137 (466)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 567999999999999999988532 25678899999999999987 6789999999999999999999876 4
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC---------CCCHHHHHHHHHcCCCCeEE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP---------FNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~d~~~le~~~~~~~~~~~~ 143 (368)
++.+||.+.++|||.+..++..++.......+ |...++.....+.....+ .++++++++.+.++++++++
T Consensus 138 ~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAA 217 (466)
T PRK07030 138 RKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAA 217 (466)
T ss_pred CCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 57789999999999999888877654322221 111111111111111111 12467788888876789999
Q ss_pred EEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeee
Q 017633 144 IILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYG 220 (368)
Q Consensus 144 ~~~~~-~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~ 220 (368)
+++|| +.+.+|.+.++++|+++++++|++||+++|+||+++|| |+|..++++++++.||+++++|+++|| +|+|.++
T Consensus 218 vi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~ 297 (466)
T PRK07030 218 VIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVL 297 (466)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEE
Confidence 99999 69999999999999999999999999999999999999 999999999999999999999999999 5999999
Q ss_pred ehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 221 GRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 221 ~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
+++++++.+... +...+++||++|+++++++.++++.++++++.++.++..+++++.|+++. +++.+..+++.|.
T Consensus 298 ~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl 376 (466)
T PRK07030 298 TTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-DHPHVAEVRQTGM 376 (466)
T ss_pred ecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCEEEeEecee
Confidence 999998877421 23568899999999999999999999989999999999999999999874 5677778999999
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++++++....... ............+.+.++++|+++.+.+.. .+.|++.++++|+++++++++++++++
T Consensus 377 ~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 377 ILAIEMVQDKASK--TPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEEEEeccCcccc--ccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9999986432110 000001112357889999999999886532 235689999999999999999998763
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=345.91 Aligned_cols=350 Identities=25% Similarity=0.375 Sum_probs=281.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++++..++ ..+++...++++++++.+++ .+.++|++||++|++.|+++++.++++++|
T Consensus 67 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~i 146 (443)
T PRK06058 67 VTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAV 146 (443)
T ss_pred hhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeE
Confidence 5789999999999999999875432 24578889999999999873 369999999999999999999999899999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccCCCC---------------HHHHHHHHHcCCCCe
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFND---------------VSALENLFENNKGEI 141 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d---------------~~~le~~~~~~~~~~ 141 (368)
|.+.++|||.+..++..++... ....+ +....+... ....++++ ++.+++.+ .++++
T Consensus 147 i~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i 220 (443)
T PRK06058 147 VVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRA----PMSYPYRDPKGLATDGEEAAARAITVIEKQV--GADNL 220 (443)
T ss_pred EEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEc----CCCcccccccccccchHHHHHHHHHHHHHhh--CCCce
Confidence 9999999999998888765321 11111 000111000 00011111 12233333 23689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 220 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~ 220 (368)
+++++||+++++|.+.++++|+++|+++|++||+++|+||+++|| |+|..++.+++++.||++++||++++|+|+|+++
T Consensus 221 Aavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~ 300 (443)
T PRK06058 221 AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGGLPLSAVT 300 (443)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCCCccEEEE
Confidence 999999999999999999999999999999999999999999999 9998888899999999999999999999999999
Q ss_pred ehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 221 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
+++++++.+.. ..+++|+++|+++++++.++++.+.++++.++..++.++++++|+++..+++.+..+.+.|.++++
T Consensus 301 ~~~~i~~~~~~---~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i 377 (443)
T PRK06058 301 GRAEIMDAPHP---GGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAI 377 (443)
T ss_pred EcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEE
Confidence 99999888763 347799999999999999999999888999999999999999999987777777789999999999
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++..... +.++......+.+.|+++||.+.+++. +.+ .|++.++++++++++++|++++.++
T Consensus 378 ~~~~~~~------~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 378 ELVKPGT------TEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred EEecCCC------CCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 9864311 011223456788889999999987542 233 4689999999999999999999764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=345.18 Aligned_cols=355 Identities=21% Similarity=0.241 Sum_probs=287.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCCC-CCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
.+++||++|+|.+++.+++++... .+++++...+|++.+++..++ .+.++|++||++|++.|+++++.+ +
T Consensus 65 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~ 144 (453)
T PRK06943 65 VNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRG 144 (453)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999988532 246788999999999999874 579999999999999999999654 3
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC---------CCCHHHHHHHHHcCCCCeEE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP---------FNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~d~~~le~~~~~~~~~~~~ 143 (368)
++.+||.+.++|||.+..++..++.......+ +...+......+.....+ .++++++++.+.++++++++
T Consensus 145 ~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAA 224 (453)
T PRK06943 145 DKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAA 224 (453)
T ss_pred CCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 57889999999999998888887754322222 111111111111111111 12468888888877779999
Q ss_pred EEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeee
Q 017633 144 IILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYG 220 (368)
Q Consensus 144 ~~~~~~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~ 220 (368)
+++||. .+++|.+.++++|++++.++|++||+++|.||+++|| |+|..++++++++.||+++++|++++| +|+|.++
T Consensus 225 viiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~ 304 (453)
T PRK06943 225 LIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVL 304 (453)
T ss_pred EEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEE
Confidence 999994 8999999999999999999999999999999999999 999999999999999999999999999 5999999
Q ss_pred ehHHHHHHhcCC---CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 221 GRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 221 ~~~~~~~~~~~~---~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
+++++.+.+... ..+.+++||++|++++++++++++.++++++.++..+..+++++.|+++. +.+....+++.|.+
T Consensus 305 ~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~ 383 (453)
T PRK06943 305 SRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQVRHLRQRGTI 383 (453)
T ss_pred EcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCEEeEeccccE
Confidence 999998887532 13457899999999999999999999988999999999999999999874 45555588999999
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++++.... .+.......+.+.++++||++.+.+.. .+.|++.++++|+++++++|++++.+
T Consensus 384 ~gvel~~~~--------~~~~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 384 FAFDVALDG--------DAARTFSRRFFEAALERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred EEEEEccCC--------CcchHHHHHHHHHHHHCCcEEEecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999986321 011223567889999999999876532 23468999999999999999999865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=347.70 Aligned_cols=361 Identities=23% Similarity=0.260 Sum_probs=284.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC----CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHh-----
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAF----- 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~----- 72 (368)
++++||++|+|++++.+++++...+ +.+++...+|+++|.+.++ +.+.++|++||++|++.|+++++.+
T Consensus 100 ~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g 179 (504)
T PLN02760 100 CTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALG 179 (504)
T ss_pred hcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999885432 3567889999999999864 4578999999999999999999866
Q ss_pred -cCCceEEEEcCCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccc--cCCC--------CHHHHHHHHH-cCCC
Q 017633 73 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLT--APFN--------DVSALENLFE-NNKG 139 (368)
Q Consensus 73 -~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~--------d~~~le~~~~-~~~~ 139 (368)
+++.+||.+.++|||.+..++.+++.+.....+. ....+.+...+..+. ++.. ..+++++.+. ++++
T Consensus 180 ~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~ 259 (504)
T PLN02760 180 RPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPE 259 (504)
T ss_pred CCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 2467899999999999888877776533211111 111111111111111 1111 1346777774 3456
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccce
Q 017633 140 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 217 (368)
Q Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG 217 (368)
+++++++||+.+++|.+.+|++|+++|+++|++||++||+||+++|| |+|..++++++++.||+++|||++++| +|+|
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~Pig 339 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIG 339 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccc
Confidence 89999999999999999999999999999999999999999999999 999999999999999999999999988 5999
Q ss_pred eeeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 017633 218 AYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 218 ~v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
.+++++++++.+... +...+++||++||+++++++++++.++++++.++++++.+++++.|+++ .+.+.+..+++
T Consensus 340 Av~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG 418 (504)
T PLN02760 340 AVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIGEIRG 418 (504)
T ss_pred eEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEEe
Confidence 999999999887532 2346789999999999999999999988899999999999999999987 66777778999
Q ss_pred ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.|.++++++...... .....++......+.+.|+++||.+.+.+.. .+.+++.++++|++++++++++++.+
T Consensus 419 ~Gl~~gie~~~~~~~--~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 419 TGLILGTEFVDNKSP--NDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred CceEEEEEEecCCcc--cccccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998643210 0000011223567889999999999876533 23467899999999999999999864
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=343.68 Aligned_cols=362 Identities=23% Similarity=0.266 Sum_probs=287.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--C-CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
++++||++|+|.+++.+++++... . .+.++...+|++.|++..+ +.++++|++||++|++.|+++++.+ +
T Consensus 41 ~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~ 120 (443)
T PRK07483 41 VSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQP 120 (443)
T ss_pred hhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999988532 1 2567888999999999987 5789999999999999999999987 5
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCC-C---------CHHHHHHHHH-cCCCCe
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF-N---------DVSALENLFE-NNKGEI 141 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---------d~~~le~~~~-~~~~~~ 141 (368)
++.+||.+.++|||.+..++..++.......+ +...+.........+..+. . .++++++.+. .+++++
T Consensus 121 ~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 200 (443)
T PRK07483 121 QRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTV 200 (443)
T ss_pred CCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCce
Confidence 67789999999999999888887764332222 1111111000000000000 0 1356777664 345689
Q ss_pred EEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-ccee
Q 017633 142 AAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGA 218 (368)
Q Consensus 142 ~~~~~~~~~~-~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~ 218 (368)
+++++||+.+ .+|.+.++++|+++++++|++||+++|+||+++|| |+|..++++++++.||+++++|++++|+ |+|.
T Consensus 201 AAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~a 280 (443)
T PRK07483 201 AAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGA 280 (443)
T ss_pred EEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEE
Confidence 9999999997 57999999999999999999999999999999999 9999999999999999999999999995 9999
Q ss_pred eeehHHHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 219 YGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 219 v~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
+++++++.+.+... +.+.+++||++|++++++++++++.++++++.++..+..+++++.|+++..+++.+..+++.|.+
T Consensus 281 v~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm 360 (443)
T PRK07483 281 VLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLF 360 (443)
T ss_pred EEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccE
Confidence 99999998887632 23458899999999999999999999989999999999999999999987778877899999999
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++++....... ....+.......+.+.++++|+++.+.+. .. +.|+++++++|+++++++|++++.+
T Consensus 361 ~gie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 361 VGVELVADRATK--APFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred EEEEEeeccccc--CCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999986432100 00001112356788999999999976431 22 3478999999999999999999865
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=339.73 Aligned_cols=341 Identities=25% Similarity=0.319 Sum_probs=286.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-------C
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-------G 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-------~ 74 (368)
.+++||++|+|.+++.+++++....+ +.++...++.+.|.+..+..+.++|++||++|++.|+++++.+. +
T Consensus 51 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~ 130 (408)
T PRK04612 51 VCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPAD 130 (408)
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 57899999999999999998754432 45788899999999988756899999999999999999999872 2
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+.+|+.+.++|||.+..++..++.+.....+.. ....+..++++|++.+++.+. ++++++++++|+++++|
T Consensus 131 r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~~--~~~~aavi~eP~~~~gg 201 (408)
T PRK04612 131 KRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEP-------LPGGFRYVDFNDVEALEAAMA--GGDVAAVMLEPIQGEGG 201 (408)
T ss_pred CcEEEEECCCcCCccHHHHHhcCCcccccCCCC-------CCCCceEcCCCCHHHHHHhhC--CCCEEEEEECCccCCCC
Confidence 457999999999999988887765432222211 112345567789999999886 35899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
...++++|+++|+++|++||+++|+||+|++| +.|..+....+++.||+.+|||++++|+|+|++++++++++.+..
T Consensus 202 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~-- 279 (408)
T PRK04612 202 VMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQF-- 279 (408)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcC--
Confidence 88888999999999999999999999999999 888766666778899999999999999999999999888887763
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
..+++|+++++++++++.++++.++++++.+++.++.++++++|+++..+++....+.+.|.++++++...
T Consensus 280 -~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~-------- 350 (408)
T PRK04612 280 -GAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPA-------- 350 (408)
T ss_pred -CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCc--------
Confidence 34678899999999999999999988899999999999999999998877887788999999999998521
Q ss_pred cccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......++.+.|+++|+.+.+.+...+ .+++.++++|++++++++++++.+
T Consensus 351 ---~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 351 ---HAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALAD 403 (408)
T ss_pred ---hhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 122356788999999999988764444 468899999999999999999865
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=346.01 Aligned_cols=360 Identities=23% Similarity=0.320 Sum_probs=282.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCCC----CCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS----IEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~----~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
++++||++|+|.+++.+++++... .+++++...+|+++|.+..++ ...+++++||++|++.|+++++.++++.
T Consensus 50 ~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~ 129 (442)
T TIGR00709 50 TLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRT 129 (442)
T ss_pred hhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999987432 236778899999999999873 2446667999999999999999999999
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCC-----CH----HHHHHHHH---cCCCCeEE
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN-----DV----SALENLFE---NNKGEIAA 143 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----d~----~~le~~~~---~~~~~~~~ 143 (368)
+||.+.++|||.+..++..++.......+ +...++.....+..+..+++ +. +.+++.+. +.++++++
T Consensus 130 ~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaa 209 (442)
T TIGR00709 130 NVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAA 209 (442)
T ss_pred eEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEE
Confidence 99999999999999888887642211111 11112211112222222222 11 22444443 23357999
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeeh
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~ 222 (368)
+++||+++++|.+.+|++|+++++++|++||+++|.||+|+|| |+|..++++++++.||++++||++++|+|+|+++++
T Consensus 210 vi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~ 289 (442)
T TIGR00709 210 VILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIA 289 (442)
T ss_pred EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEc
Confidence 9999999999999999999999999999999999999999999 999888888999999999999999999999999998
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
++ ++.+. ...+++|+++|+++++++.++++.++++++.++.+++.+++++.|+++..+++.+..+++.|.++++++
T Consensus 290 ~~-~~~~~---~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~ 365 (442)
T TIGR00709 290 PE-FDAWQ---PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMI 365 (442)
T ss_pred hH-HhccC---CCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEE
Confidence 87 45543 234779999999999999999999988899999999999999999998878888889999999999999
Q ss_pred ecCC-CcccchhcccccHHHHHHHHHHHHcCeeecCCCC--C--ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--E--AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~--~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.... ..+......++......+...++++|+++.+.+. . .+.|++.+|++|++++++++++++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 366 VDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred ccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6431 1111111111223456788899999999986542 2 24579999999999999999999864
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=346.03 Aligned_cols=360 Identities=26% Similarity=0.356 Sum_probs=284.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC-C--CCCCChhHHHHHHHHHhhCCCC----CeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 4 LIILFPSYLQVLAALGETMKKGT-S--FGAPCLLENVLAEMVISAVPSI----EMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~~----~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.+++||++|+|.+++.+++.+.. . .+++++...++++.+.+..++. ..+++++||++|++.|+++++.++++.
T Consensus 69 ~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~ 148 (459)
T PRK06931 69 TLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRS 148 (459)
T ss_pred hccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999998632 2 2357788999999999998732 245777999999999999999999999
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCC-----CHHHH----HHHHHc---CCCCeEE
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN-----DVSAL----ENLFEN---NKGEIAA 143 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----d~~~l----e~~~~~---~~~~~~~ 143 (368)
+||.+.++|||.+..++..++.......+ +...++.....++.+..+++ +.+.+ ++.+.. .++++++
T Consensus 149 ~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAA 228 (459)
T PRK06931 149 NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAA 228 (459)
T ss_pred eEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEE
Confidence 99999999999999988877653322212 11222222222233333332 23333 334432 3457999
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeeh
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~ 222 (368)
+++||+.+++|.+.++++|++++.++|++||+++|.||+++|| |+|..++++++++.||+++++|++++|+|+|.++.+
T Consensus 229 vI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~ 308 (459)
T PRK06931 229 VILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIK 308 (459)
T ss_pred EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCcceeeeeeH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999998888
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
+++ +.+. ...+++||++|++++++++++++.++++++.++.++..+++++.|+++..+++.+..+.+.|.++++++
T Consensus 309 ~~~-~~~~---~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel 384 (459)
T PRK06931 309 KEF-DAWQ---PGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEI 384 (459)
T ss_pred HHH-hhcc---CCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEE
Confidence 764 5553 345789999999999999999999988899999999999999999998888888889999999999999
Q ss_pred ecCC-CcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.... ..+.......+......+...++++|+++.+.+. .. +.|++.++++|++++++++++++.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 385 VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred ccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence 6431 1111111111223456788999999999987542 22 3478999999999999999999864
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=344.48 Aligned_cols=362 Identities=22% Similarity=0.280 Sum_probs=289.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC---CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
++++||++|+|.+++.+++++.. ..++.++...+|+++|++.++ +.+.++|++||++|++.|+++++.+ +
T Consensus 67 ~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~t 146 (460)
T PRK06916 67 LNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKP 146 (460)
T ss_pred HhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999843 235678889999999999997 4689999999999999999999874 4
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCC---------CCHHHHHHHHHcCCCCeEE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF---------NDVSALENLFENNKGEIAA 143 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~d~~~le~~~~~~~~~~~~ 143 (368)
++.+||.+.++|||.+..++.+++.......+ +...+......+.....+. .+++++++.+.++++++++
T Consensus 147 gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAA 226 (460)
T PRK06916 147 KKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAA 226 (460)
T ss_pred CCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 57889999999999999888887654322222 1111111111111111111 1467788888877789999
Q ss_pred EEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeee
Q 017633 144 IILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYG 220 (368)
Q Consensus 144 ~~~~~-~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~ 220 (368)
+++|| +.+++|.+.++++|+++++++|++||+++|.||+++|| |+|..++++++++.||+++++|++++| +|+|.++
T Consensus 227 vi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~ 306 (460)
T PRK06916 227 IIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITV 306 (460)
T ss_pred EEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceee
Confidence 99999 69999999999999999999999999999999999999 999999999999999999999999999 5999999
Q ss_pred ehHHHHHHhcC----CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 221 GRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 221 ~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
+++++++.+.. .....+++|+++|++++++++++++.++++++.++++++.+++++.|+++. +.+.+..+.+.|.
T Consensus 307 ~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl 385 (460)
T PRK06916 307 TTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLF-ALKHVGDIRQLGL 385 (460)
T ss_pred ecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh-cCCCeEEeecCCc
Confidence 99999887642 123557889999999999999999999888899999999999999999874 4666678999999
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++++++...... .............+...++++||++.+.+... +.|++.++++|+++++++|++++.++
T Consensus 386 m~giel~~~~~~--~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 386 MVGIELVKNKET--KEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred eeeEEeeccccc--ccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 999998643210 00000111224678899999999999865322 35689999999999999999998753
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=342.84 Aligned_cols=354 Identities=28% Similarity=0.343 Sum_probs=283.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+++||++|+|.+++.+++++.... .+..+...+|+++|++.++ +.+.++|++||++|++.|+++++.++++.+|+
T Consensus 54 ~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii 133 (433)
T PRK08117 54 VANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYII 133 (433)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 5789999999999999999875332 2467889999999999995 67899999999999999999999898899999
Q ss_pred EEcCCCCCCchhhhhhcCCC-ccccCC-CCCCCCCCCCCCccc---------ccCCCCHHHHHHHHHc--CCCCeEEEEE
Q 017633 80 KFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETL---------TAPFNDVSALENLFEN--NKGEIAAIIL 146 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~---------~~~~~d~~~le~~~~~--~~~~~~~~~~ 146 (368)
.+.++|||.+...+...+.. .....+ +...++.....+... ....++++++++.+++ .+++++++++
T Consensus 134 ~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~ 213 (433)
T PRK08117 134 SFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVII 213 (433)
T ss_pred EECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 99999999998887665431 111111 111111100000000 0111256778888764 3467999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHH
Q 017633 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 147 ~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~ 225 (368)
||+.+++|.+.++++|+++++++|++||++||+||+|+|| +.|..+..+++++.||+.++||++++|+|+|++++++++
T Consensus 214 Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i 293 (433)
T PRK08117 214 EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKEL 293 (433)
T ss_pred CCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHH
Confidence 9999999999999999999999999999999999999999 888877778889999999999999999999999999999
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
++.+.. ..+++|+++|+++++++.++++.++++++.++++++.++++++|.++..+++....+++.|.++++++...
T Consensus 294 ~~~~~~---~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~ 370 (433)
T PRK08117 294 MEQWPL---GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDP 370 (433)
T ss_pred HhhccC---CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecC
Confidence 888752 34778899999999999999999977889999999999999999998777776678889999999988643
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. ..++......+.+.|+++||.+.+.+. ..++ +++.++++++++++++|++++.+
T Consensus 371 ~-------~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 371 D-------GEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred C-------CCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 1 011233456788999999999876432 3333 56899999999999999999865
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=342.23 Aligned_cols=356 Identities=22% Similarity=0.299 Sum_probs=284.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCCCC--CeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++++.... +++++...++++.|++.+++. +.|+|++||++|++.|+++++.++++.+|
T Consensus 53 ~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~i 132 (445)
T PRK08593 53 SQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYI 132 (445)
T ss_pred hhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeE
Confidence 4679999999999999999885443 246788999999999999743 79999999999999999999999899999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccC--CCC-------HHHHHHHHHc--CCCCeEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP--FND-------VSALENLFEN--NKGEIAAII 145 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~--~~d-------~~~le~~~~~--~~~~~~~~~ 145 (368)
|.+.++|||.+..++..++... ....+ +...++.....++....+ .++ ++++++.+.+ .++++++++
T Consensus 133 i~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI 212 (445)
T PRK08593 133 ISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIV 212 (445)
T ss_pred EEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 9999999999988887776421 11111 111111110111111100 011 2455555543 236899999
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHH
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~ 224 (368)
+||+.+++|.+.++++|+++++++|++||+++|+||+|+|| +.|..+..+++++.||++++||++++|+|+|+++++++
T Consensus 213 ~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~ 292 (445)
T PRK08593 213 IETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKE 292 (445)
T ss_pred EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEEEEEcHH
Confidence 99999999999999999999999999999999999999999 88887788889999999999999998999999999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+++.+.. ..+.+|++++++++++++++++.++++++.++.+++.+++++.|+++..+++.+..+++.|.++++++..
T Consensus 293 i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~ 369 (445)
T PRK08593 293 IMESLEA---PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVS 369 (445)
T ss_pred HHhhhcc---CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEec
Confidence 9988862 2356799999999999999999998888999999999999999999877788888999999999998864
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.... ..++......+...|+++||.+.+.+.+.+ .+++.++++|++++++++++++.+
T Consensus 370 ~~~~-----~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 370 DKKL-----KTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred CCCc-----CCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 2210 012233457789999999999977543443 478999999999999999998865
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=342.58 Aligned_cols=350 Identities=22% Similarity=0.282 Sum_probs=284.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh-----cC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----TG 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~-----~~ 74 (368)
++++||++|+|.+++.+++++.... .++++...+|+++|++..+ +.+.++|++||++|++.|+++++.+ ++
T Consensus 54 ~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~ 133 (428)
T PRK07986 54 AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEP 133 (428)
T ss_pred hhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999885432 3467889999999999997 4689999999999999999999987 46
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCc-cccCCCC-CCCCCCCCCCccc---ccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPD-SPGVPKGATYETL---TAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~---~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
+.+||.+.++|||.+..++...+... ....+.. ..+......+... ..+++|++++++.+++++++++++++||+
T Consensus 134 r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi 213 (428)
T PRK07986 134 RQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPI 213 (428)
T ss_pred CcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEech
Confidence 78899999999999988887755321 1111111 1111000000000 01235788999999876678999999996
Q ss_pred -CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHH
Q 017633 150 -VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 226 (368)
Q Consensus 150 -~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~ 226 (368)
.+.+|.+.++++|+++|+++|++||++||+||+|+|| +.|..++++++++.||++++||+++|| +++|.++++++++
T Consensus 214 ~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~ 293 (428)
T PRK07986 214 VQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVA 293 (428)
T ss_pred hcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHH
Confidence 7778888999999999999999999999999999999 999888899999999999999999999 6999999999999
Q ss_pred HHhcCCC--CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 227 EMVAPAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 227 ~~~~~~~--~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+.+.... .+.+++||++|++++++++++++.++++++.++..++.+++++.|+++. +++....+++.|.++.+++..
T Consensus 294 ~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~-~~~~i~~vRg~Gl~~~ve~~~ 372 (428)
T PRK07986 294 ETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLR-DAPMVADVRVLGAIGVVETTR 372 (428)
T ss_pred HHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-cCCCEEeEeccceEEEEEeCC
Confidence 9886421 2457889999999999999999999888899999999999999999864 355566788999999998742
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. .....+.+.|+++|+++.+.+.. .+.|++.++++|+++++++|++++.+
T Consensus 373 ~-------------~~~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 373 P-------------VNMAALQRFFVEQGVWIRPFGKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred c-------------ccHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 12467889999999999886532 23468999999999999999999853
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=342.44 Aligned_cols=361 Identities=23% Similarity=0.266 Sum_probs=285.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCCC------CCeEEEeCChHHHHHHHHHHHHHh--
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS------IEMVRFVNSGTEACMGVLRLARAF-- 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~------~~~v~~~~~gt~a~~~al~~~~~~-- 72 (368)
++++||++|+|.+++.+++++... .+++++...+|++.+.+..+. .+.++|++||++|++.|+++++.+
T Consensus 75 ~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~ 154 (472)
T PRK08742 75 TNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFH 154 (472)
T ss_pred hccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHH
Confidence 568999999999999999986432 246778899999999998863 579999999999999999999987
Q ss_pred ----cCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCC---------CHHHHHHHHHcCC
Q 017633 73 ----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN---------DVSALENLFENNK 138 (368)
Q Consensus 73 ----~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------d~~~le~~~~~~~ 138 (368)
+++.+||.+.++|||.+..++..++.......+ |...++.....++....+.. +++.+++.+.+++
T Consensus 155 ~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (472)
T PRK08742 155 NRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSP 234 (472)
T ss_pred hcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 346789999999999999888887654322222 11111111111111111111 3577788887666
Q ss_pred CCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-cc
Q 017633 139 GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LP 215 (368)
Q Consensus 139 ~~~~~~~~~~-~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~ 215 (368)
++++++++|| +.+.+|.+.+|++|+++++++|++||++||.||+++|| |+|..++++++++.||+++++|+++|| +|
T Consensus 235 ~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~P 314 (472)
T PRK08742 235 GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLP 314 (472)
T ss_pred CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCC
Confidence 7899999999 58889999999999999999999999999999999999 999999999999999999999999999 49
Q ss_pred ceeeeehHHHHHHhcCC---CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 017633 216 VGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 292 (368)
Q Consensus 216 iG~v~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 292 (368)
+|.+++++++++.+... +...+++||++|+++++++.++++.++++++.++.++..+++++.++.+ .+++.+..++
T Consensus 315 laav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~dvR 393 (472)
T PRK08742 315 LSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVADVR 393 (472)
T ss_pred cceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEe
Confidence 99999999998877531 2345789999999999999999999998999999999999998766654 5567777999
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.|.++++++....... ....++......+.+.++++||++.+.++. .+.|++.++++|+++++++|++++.+
T Consensus 394 G~Gl~~giel~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 394 QAGMVVAFELTRGGNKR--TPFPPAARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred ccceEEEEEeccCcccc--ccCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999986421100 000011122467888899999999886532 23478999999999999999999875
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=338.97 Aligned_cols=354 Identities=28% Similarity=0.413 Sum_probs=282.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC---CCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||++|++.+++.+++++..... ++++...++++++.+..+ +.+.++|++||++|++.|+++++.++++.+|
T Consensus 51 ~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~i 130 (421)
T PRK06777 51 VLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGV 130 (421)
T ss_pred hhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeE
Confidence 46799999999999999999864432 357788999999999986 3679999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccc-cC-CCCHHHHHHHHHc--CCCCeEEEEEcccCCC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT-AP-FNDVSALENLFEN--NKGEIAAIILEPVVGN 152 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-~~-~~d~~~le~~~~~--~~~~~~~~~~~~~~~~ 152 (368)
+.+.++|||.+..++.+++... ....+ +...++.....++... .+ ..+++.+++.+.+ ++++++++++||+.++
T Consensus 131 i~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~ 210 (421)
T PRK06777 131 IAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGE 210 (421)
T ss_pred EEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCC
Confidence 9999999999998888766421 11111 1111111000000000 00 0136778888864 4568999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
+|...++++|+++|.++|++||+++|+||+|+|| +.|..++..++++.||++++||++++|+|+||+++++++++.+..
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~ 290 (421)
T PRK06777 211 GGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAP 290 (421)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCC
Confidence 9998999999999999999999999999999999 888877888889999999999999999999999999999888763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+++|+++|+++++++.++++.++++++.++++++.++++++|+++..+.+.+..+.+.|.++.+++..+...
T Consensus 291 ---~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~--- 364 (421)
T PRK06777 291 ---GGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTG--- 364 (421)
T ss_pred ---CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccC---
Confidence 34678999999999999999999988889999999999999999998777777778899999998877532100
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.......+.+.++++||.+.+++. ..+ .+++.++++++++++++|++++.
T Consensus 365 ---~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 365 ---KPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred ---CccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 01223356677778999999998652 233 35778999999999999999875
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=341.93 Aligned_cols=360 Identities=25% Similarity=0.316 Sum_probs=284.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC-C--CCCCChhHHHHHHHHHhhCCC-C---CeEEEe-CChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFPSYLQVLAALGETMKKGT-S--FGAPCLLENVLAEMVISAVPS-I---EMVRFV-NSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~-~---~~v~~~-~~gt~a~~~al~~~~~~~~~ 75 (368)
.+++||++|+|.+++.+++++.. . .+++++...+|++++.+..++ . +.++|+ +||++|++.|+++++.++++
T Consensus 74 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr 153 (464)
T PRK06938 74 TLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGR 153 (464)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCC
Confidence 57899999999999999997532 2 245788899999999998873 2 367665 79999999999999999999
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCC---------CCHHHHHHHHHcC---CCCeE
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPF---------NDVSALENLFENN---KGEIA 142 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~d~~~le~~~~~~---~~~~~ 142 (368)
.+||.+.++|||.+..++..++.......+... .++.....+.....+. .+++.+++.+.+. +++++
T Consensus 154 ~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iA 233 (464)
T PRK06938 154 STVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPA 233 (464)
T ss_pred CeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceE
Confidence 999999999999999888877653222111111 1110000000000110 1267788888642 24799
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeee
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~ 221 (368)
++++||+.+++|.+.++++|+++++++|++||+++|.||+++|| |+|..++++++++.||++++||+++||+|+|.+++
T Consensus 234 AvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~ 313 (464)
T PRK06938 234 AVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVY 313 (464)
T ss_pred EEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCCceEEEee
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 222 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
++++ +.+. ...+++||++|++++++++++++.++++++.++.++..+++++.|+++..+++.+..+++.|.+++++
T Consensus 314 ~~~~-~~~~---~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie 389 (464)
T PRK06938 314 REWL-DTWQ---PGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVE 389 (464)
T ss_pred hhHh-hccC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEE
Confidence 8875 5443 34578999999999999999999998888999999999999999999888888888999999999999
Q ss_pred eecCC-CcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 302 FTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 302 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.... ..+..............+...++++|+.+.+.+. .. +.|++.+|++|++++++++++++.+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 390 IVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred eccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 86431 1111111111123356788899999999987542 22 3468999999999999999999865
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=338.93 Aligned_cols=339 Identities=24% Similarity=0.300 Sum_probs=282.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc------CC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~------~~ 75 (368)
++++||++|+|.+++.+++.+.... ++.++...++++++++..+ .+++++++||++|++.|+++++.+. ++
T Consensus 50 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r 128 (406)
T PRK12381 50 VNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF-ADRVFFCNSGAEANEAALKLARKYAHDRYGSHK 128 (406)
T ss_pred hccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC-CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4689999999999999999874322 3456778999999999874 5799999999999999999998773 67
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
.+|+.+.++|||.+...+..++.+.....+ .. ....+..++++|++++++.+. ++++++++||+++++|.
T Consensus 129 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~d~~~l~~~l~---~~~aaviiEPv~~~gg~ 198 (406)
T PRK12381 129 SGIVAFKNAFHGRTLFTVSAGGQPKYSQDF---AP----LPPDIRHAAYNDLNSASALID---DQTCAVIVEPIQGEGGV 198 (406)
T ss_pred CeEEEECCCcCCcchhHHhhcCCcccccCC---CC----CCCCeeEeCCCCHHHHHHhcc---CCeeEEEEeCCcCCCCC
Confidence 789999999999998888777654322111 11 112346678889999999886 47999999999999998
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
..++.+|+++|+++|++||+++|+||+|+|+ +.|..+..+.+++.||++++||++++|+|+|++++++++++.+..
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG~~ig~~~~~~~~~~~~~~--- 275 (406)
T PRK12381 199 IPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTV--- 275 (406)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCCCceEEEEEcHHHHhhcCC---
Confidence 8889999999999999999999999999999 888777777889999999999999999999999999999988863
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..+++|+++++++++++.++++.+.++++.++++++.+++++.|+++..+.+....+++.|.++++++...
T Consensus 276 ~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~--------- 346 (406)
T PRK12381 276 GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAE--------- 346 (406)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCc---------
Confidence 34668899999999999999999877789999999999999999998666665567778888888887421
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.......+.+.|+++||.+.+.+.+.++ +++.++++++++++++|++++.+
T Consensus 347 --~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 399 (406)
T PRK12381 347 --YAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACER 399 (406)
T ss_pred --hhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 0123578889999999999876645554 57779999999999999998864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=339.36 Aligned_cols=361 Identities=22% Similarity=0.245 Sum_probs=283.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
.+++||++|+|.+++.++++++.. +++.++...+|+++|++..+ +.++++|++||++|++.|+++++.+
T Consensus 61 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~ 140 (456)
T PRK07480 61 CVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGK 140 (456)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 367999999999999999998532 24578899999999999997 5789999999999999999999987
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC-CCCCCCCCCCccccc-------CCCC--HHHHHHHHH-cCCCCe
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTA-------PFND--VSALENLFE-NNKGEI 141 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~d--~~~le~~~~-~~~~~~ 141 (368)
+++.+||.+.++|||.+...+..++.......++. ..++.+...+..+.. ++++ ++.+++.+. ++++++
T Consensus 141 ~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 220 (456)
T PRK07480 141 PQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNV 220 (456)
T ss_pred CCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcE
Confidence 34678999999999999887777665322111111 111111111111100 0111 366665554 345689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v 219 (368)
+++++||+.+++|.+.++++|+++++++|++||+++|+||+++|| |+|..++++++++.||++++||++++| +|+|.+
T Consensus 221 AAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av 300 (456)
T PRK07480 221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAV 300 (456)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999 499999
Q ss_pred eehHHHHHHhc-CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH-HHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 220 GGRRDIMEMVA-PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL-NKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
++++++++.+. ..+.+.+++||++|+++++++.++++.++++++.++. .+..++++++|+++ .+++.+..+++.|.+
T Consensus 301 ~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~~vrG~Glm 379 (456)
T PRK07480 301 GVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVGEVRGVGLV 379 (456)
T ss_pred EEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCeeeEEeecce
Confidence 99999988873 2234568899999999999999999999888899999 59999999999984 567777789999999
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++++....... .. ..........+...++++||.+.+.+.. .+.|++.++++|+++++++|++++.+
T Consensus 380 ~gie~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 380 GAIELVKDKATR-ER-FEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDELVEKARKALDA 448 (456)
T ss_pred EEEEEecccccc-cc-CcchhhHHHHHHHHHHHCCcEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999996432100 00 0000112356778899999999875432 24578999999999999999999865
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=339.06 Aligned_cols=356 Identities=26% Similarity=0.345 Sum_probs=284.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
++++||++|+|.+++.+++.+.... +..++...++++.|.+..+ +.+.++|++||++|++.|+++++.++++..|+
T Consensus 52 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii 131 (443)
T PRK08360 52 VQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKIL 131 (443)
T ss_pred hcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 5789999999999999999986443 2347788999999999997 45899999999999999999999999999999
Q ss_pred EEcCCCCCCchhhhhhcCCCc-cccCCCCCCCCCCCCCCcccccCC---------CCHHHHHHHHHc--CCCCeEEEEEc
Q 017633 80 KFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF---------NDVSALENLFEN--NKGEIAAIILE 147 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~le~~~~~--~~~~~~~~~~~ 147 (368)
.+.++|||.+..++...+... ....+....++.....++....+. ++++.+++.+.+ ++++++++++|
T Consensus 132 ~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~e 211 (443)
T PRK08360 132 SYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAE 211 (443)
T ss_pred EEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 999999999988877765321 111111111111111111111111 234566777754 34689999999
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHH
Q 017633 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 148 ~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
|+++++|.+.++++|++++.++|++||+++|+||+|++| +.|..++..++++.||++++||++++|+|+|+++++++++
T Consensus 212 P~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~ 291 (443)
T PRK08360 212 PIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIM 291 (443)
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHH
Confidence 999999999999999999999999999999999999999 8887777777899999999999999999999999999998
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
+.+.. ..+.+|+++++++++++.++++.+.++++.++++++.+++++.|+++..+++.+..+++.|.++++++....
T Consensus 292 ~~~~~---~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~ 368 (443)
T PRK08360 292 DSLPP---LAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDR 368 (443)
T ss_pred hhhcC---CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCC
Confidence 88863 346789999999999999999999888899999999999999999987777777789999999999886421
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. +.+.......+...|+++|+.+.+.+...+ .|++.++++|++++++++++++.+
T Consensus 369 ~~-----~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 369 ET-----KERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred cc-----cCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 10 011223456788999999999976544443 458999999999999999999864
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=340.48 Aligned_cols=361 Identities=20% Similarity=0.263 Sum_probs=284.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC---CCC-CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGT---SFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~---~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
.+++||++|+|.+++.+++.+.. .++ .+++...+++++|.+..+ +.+.++|++||++|++.|+++++.+
T Consensus 62 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~ 141 (466)
T PRK07036 62 CVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGR 141 (466)
T ss_pred hhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999998743 232 678889999999999987 4789999999999999999999877
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCC---------CHHHHHHHHHc-CCCCe
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFN---------DVSALENLFEN-NKGEI 141 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------d~~~le~~~~~-~~~~~ 141 (368)
+++.+||.+.++|||.+..++..++.......+... .++.....+..+..+.+ .++.+++.+.. +++++
T Consensus 142 t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 221 (466)
T PRK07036 142 PAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNI 221 (466)
T ss_pred CCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCce
Confidence 246789999999999998877776654322222111 11111111111111111 13456666653 45789
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccc-ccCCCcchhhhhhhccCC-cccee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGA 218 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~-~~~~~~di~s~sK~~~~G-~~iG~ 218 (368)
+++++||+.+++|.+.++++|+++++++|++||+++|+||+++|| |+|..+.++ ++++.||++++||++++| +|+|.
T Consensus 222 Aavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~a 301 (466)
T PRK07036 222 AAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGA 301 (466)
T ss_pred EEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEE
Confidence 999999999999999999999999999999999999999999999 999888887 789999999999999999 59999
Q ss_pred eeehHHHHHHhcCC---C-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 219 YGGRRDIMEMVAPA---G-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 219 v~~~~~~~~~~~~~---~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
+++++++++.+... + .+.+++||++|++++++++++++.++++++.++..++.+++++.|+++ .+++.+..+++.
T Consensus 302 v~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~ 380 (466)
T PRK07036 302 VIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLVGDVRGD 380 (466)
T ss_pred EEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCEEEEEee
Confidence 99999999887532 1 246778999999999999999999988899999999999999999875 567778899999
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
|.++++++...... ......+......+...++++||.+.+.+.. .+.|++.+|++|++++++++++++.+
T Consensus 381 Gl~~~ve~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~ 452 (466)
T PRK07036 381 HLMACVECVADKGS--KALLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEE 452 (466)
T ss_pred ceEEEEEEccCccc--cCCCCchhHHHHHHHHHHHHCCcEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 99999998643211 0000111223567889999999999876532 24578999999999999999998864
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=338.75 Aligned_cols=362 Identities=21% Similarity=0.254 Sum_probs=287.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCCC-CCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
.+++||++|+|.+++.+++++.... .+.++...+|+++|++.+++ .+.++|++||++|++.|+++++.+ +
T Consensus 42 ~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t 121 (447)
T PRK06917 42 TAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQ 121 (447)
T ss_pred hccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999875322 35678899999999999984 589999999999999999999765 4
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC---------CCCHHHHHHHHHcC-CCCeE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP---------FNDVSALENLFENN-KGEIA 142 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~d~~~le~~~~~~-~~~~~ 142 (368)
++.+|+.+.++|||.+..++..++.......+ +...++.....+.....+ .++++.+++.++++ +++++
T Consensus 122 ~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iA 201 (447)
T PRK06917 122 GKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIA 201 (447)
T ss_pred CCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceE
Confidence 57889999999999999888876643221111 111111111111111111 12457788888754 35799
Q ss_pred EEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-cceee
Q 017633 143 AIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAY 219 (368)
Q Consensus 143 ~~~~~~~~~~-~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~v 219 (368)
++++||+.++ +|.+.++++|++++.++|++||+++|+||+++|| |+|..++++++++.||++++||++++|+ |+|.+
T Consensus 202 Avi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~ 281 (447)
T PRK06917 202 AFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAAT 281 (447)
T ss_pred EEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEE
Confidence 9999999985 6789999999999999999999999999999999 9999888999999999999999999995 99999
Q ss_pred eehHHHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceE
Q 017633 220 GGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 298 (368)
Q Consensus 220 ~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 298 (368)
++++++++.+... +...+++|+++|++++++++++++.++++++.+++.++.+++++.|+++..+++.+..+++.|.++
T Consensus 282 ~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~ 361 (447)
T PRK06917 282 VVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLI 361 (447)
T ss_pred EEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEE
Confidence 9999998887642 234567899999999999999999998888999999999999999999887788888999999999
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-------CCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++++...... .....++......+...|+++||.+.+.+ ... +.|++.++++|++++++++++++.+
T Consensus 362 ~ie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 362 GVEFVADKKT--KQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred EEEEeccCCc--CCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 9998643210 00000112345778899999999998752 122 3468999999999999999999865
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=338.79 Aligned_cols=353 Identities=21% Similarity=0.262 Sum_probs=281.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
++++||++|+|.+++.+++++.... ..+++...+|++.|++..+ +.+.++|++||++|++.|+++++.++++.+||
T Consensus 64 ~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii 143 (457)
T PRK05639 64 AASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWIL 143 (457)
T ss_pred hhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEE
Confidence 5789999999999999999875332 2346788899999999987 35899999999999999999999999999999
Q ss_pred EEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccCC-----CC--------HHHHHHHHHc---CCCCe
Q 017633 80 KFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPF-----ND--------VSALENLFEN---NKGEI 141 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-----~d--------~~~le~~~~~---~~~~~ 141 (368)
.+.++|||.+..++...+... ....+ +...++.....++....++ .| ++.+++.+.. +++++
T Consensus 144 ~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~i 223 (457)
T PRK05639 144 AFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEV 223 (457)
T ss_pred EECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCce
Confidence 999999999988887765311 11111 1111111111111111110 12 2345555432 34689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 220 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~ 220 (368)
+++++||+.+++|.+.++++|++++.++|++||+++|+||+++|| ++|..++.+++++.||++++||++++|+++|+++
T Consensus 224 AAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~ 303 (457)
T PRK05639 224 AALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSGVI 303 (457)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCCCcceeEE
Confidence 999999999999999999999999999999999999999999999 8998888899999999999999999999999999
Q ss_pred ehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 221 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
+++++++... ..+.+|+++|++++++++++++.++++++.++..++.++++++|+++..+++.+..+++.|.++++
T Consensus 304 ~~~~i~~~~~----~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gv 379 (457)
T PRK05639 304 GRKELMDLTS----GSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGV 379 (457)
T ss_pred ehHHHHhhcC----CCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEE
Confidence 9999988322 124578999999999999999999888999999999999999999988778888899999999999
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++..... .++......+.+.|+++|+++.+.+. ..+ .|++.++++|+++++++|++++.+
T Consensus 380 e~~~~~~-------~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 380 EIVKENG-------KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred EEecCCC-------CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 9854211 01233457789999999999987542 333 468999999999999999999854
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=340.01 Aligned_cols=361 Identities=21% Similarity=0.197 Sum_probs=285.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---C-CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---F-GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~-~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||+||+|.+++.+++++... . .+.++...+++++|++.++ +.+.++|++||++|++.|+++++.+
T Consensus 59 ~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~ 138 (460)
T PRK06105 59 SVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGR 138 (460)
T ss_pred hccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999988532 2 2467888999999999997 4689999999999999999998765
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC--C--------CCHHHHHHHHHc-CCCC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP--F--------NDVSALENLFEN-NKGE 140 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~--------~d~~~le~~~~~-~~~~ 140 (368)
+++.+||.+.++|||.+..++..++.......+ +...++.+...+.....+ . ..++++|+.+.. ++++
T Consensus 139 t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 218 (460)
T PRK06105 139 PEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDT 218 (460)
T ss_pred CCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCc
Confidence 347789999999999998877766543221111 111111111111111110 0 024677888753 4468
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-cccee
Q 017633 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA 218 (368)
Q Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~ 218 (368)
++++++||+.+++|.+.++++|+++++++|++||+++|+||+++|| |+|..+.++++++.||++++||++++| +|+|+
T Consensus 219 iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~a 298 (460)
T PRK06105 219 IAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSA 298 (460)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceE
Confidence 9999999999999999999999999999999999999999999999 999988899999999999999999988 69999
Q ss_pred eeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 219 YGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 219 v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
+++++++++.+... +...+++|+++|++++++++++++.++++++.++.+++.+++++.|+++ .+++.+..+++.
T Consensus 299 v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~ 377 (460)
T PRK06105 299 VLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGV 377 (460)
T ss_pred EEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEec
Confidence 99999998877532 2244789999999999999999999998899999999999999999998 777878899999
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
|.++++++....... ....+....+..+...++++||.+.+.+.. .+.|++.++++|++++++++++++.+
T Consensus 378 Gl~~gie~~~~~~~~--~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 378 GLIAAVELVADKATK--TPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred ceEEEEEEecCcccC--CCCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 999999986421100 000001223467889999999999886532 23578899999999999999999865
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=334.31 Aligned_cols=337 Identities=23% Similarity=0.335 Sum_probs=283.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC-------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG------- 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~------- 74 (368)
..++||++|+|.+++.+++++..... +.++...++++.+.+.. +.++++|++||++|++.|+++++.+++
T Consensus 26 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~ 104 (382)
T PLN00144 26 VNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASS-FADRVFFCNSGTEANEAAIKFARKYQRVRAPDKK 104 (382)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcC-CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 56899999999999999998754332 34778899999999876 457999999999999999999988753
Q ss_pred ------CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 75 ------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 75 ------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
+.+||.+.++|||.+..++...+.......+. .....+..++++|++++++.+.. +++++++++|
T Consensus 105 ~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~~~~--~~~aavi~eP 175 (382)
T PLN00144 105 DPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFE-------PLMPGVTFVEYGNLEAARKLIQK--GKTAAVFVEP 175 (382)
T ss_pred cccccccceEEEECCCcccccHHHHhcCCCccccccCC-------CCCCCeEEeCCCCHHHHHHhcCC--CCeEEEEEcc
Confidence 36799999999999998888776543221111 11123566788899999998863 4799999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+++++|...++.+|+++|+++|++||+++|+||+|++| +.|..+..+.+++.||+.+|||++++|+|+|++++++++++
T Consensus 176 ~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G~pig~v~~~~~~~~ 255 (382)
T PLN00144 176 VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVAS 255 (382)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCCcceEEEEEcHHHHh
Confidence 98888888889999999999999999999999999999 88877777788999999999999999999999999999998
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+.. ..+.+|+++|+++++++.++++.++++++.+++++.++++++.+.+++.+++....+.+.|.++|+.+..
T Consensus 256 ~~~~---~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--- 329 (382)
T PLN00144 256 AINP---GDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDV--- 329 (382)
T ss_pred ccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEEEecC---
Confidence 8863 3467899999999999999999998888999999999999999999887776666777899999998821
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC-Ccc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....+...++++||.+.+++. ..+ .+++.++++++++++++|++++.++
T Consensus 330 ------------~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 330 ------------PAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred ------------ccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 125788999999999998753 333 3577789999999999999998753
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=337.35 Aligned_cols=354 Identities=24% Similarity=0.327 Sum_probs=282.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC---CCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++++..... .+.+...+++++|.+..+ +.+.++|++||++|++.|+++++.++++.+|
T Consensus 44 ~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~i 123 (420)
T TIGR00700 44 VLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGV 123 (420)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcE
Confidence 57899999999999999998854332 456778899999999987 3579999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccc-------cCCC-CHHHHHHHHH--cCCCCeEEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT-------APFN-DVSALENLFE--NNKGEIAAIIL 146 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-------~~~~-d~~~le~~~~--~~~~~~~~~~~ 146 (368)
|.+.++|||.+..++..++... ....+ +...++.....+.... .+.+ +++.+++.+. +++++++++++
T Consensus 124 i~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~ 203 (420)
T TIGR00700 124 VAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVI 203 (420)
T ss_pred EEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEE
Confidence 9999999999998887765421 11111 1011111000000000 1111 2567777764 34578999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHH
Q 017633 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 147 ~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~ 225 (368)
||+.+++|.+.++++|+++|+++|++||+++|+||+|++| +.|..++++++++.||++++||++++|+|+||+++++++
T Consensus 204 Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i 283 (420)
T TIGR00700 204 EPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEI 283 (420)
T ss_pred CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCCcceEEEEecHHH
Confidence 9999999999999999999999999999999999999999 888877888889999999999999999999999999999
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
++.+.. ..+.+|+++|+++++++.++++.++++++.++..+..++++++|+++...++....+.+.|.++++.+...
T Consensus 284 ~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~ 360 (420)
T TIGR00700 284 MDAPAP---GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDP 360 (420)
T ss_pred HhhcCC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecC
Confidence 888863 34778999999999999999999888889999999999999999998777776667888999999988532
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. . ..++......+.+.++++||.+.+++. ..++ +++.++++++++++++|++++.
T Consensus 361 ~--~----~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 361 G--T----TEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred C--C----CCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 1 0 012233457788888999999998642 3333 4667899999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=338.80 Aligned_cols=362 Identities=21% Similarity=0.280 Sum_probs=286.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------ 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------ 73 (368)
++++||++|+|.+++.+++++... +.+.++...++++++.+..+ +.++++|++||++|++.|+++++.+.
T Consensus 63 ~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~ 142 (460)
T PRK06541 63 VVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP 142 (460)
T ss_pred hccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 467999999999999999998532 35678889999999999987 47899999999999999999999872
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccC-C-CC--------HHHHHHHHHc-CCCCe
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP-F-ND--------VSALENLFEN-NKGEI 141 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~d--------~~~le~~~~~-~~~~~ 141 (368)
++.+||.+.++|||.+..++..++.......+ +...++........+..+ + ++ ++.+++.+++ +++++
T Consensus 143 ~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 222 (460)
T PRK06541 143 GKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTV 222 (460)
T ss_pred CccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 46889999999999999888877654322111 212222222222222222 2 12 3678888874 35689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-cceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~v 219 (368)
+++++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| +.|..+..+++++.||++++||++++|+ |+|++
T Consensus 223 Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav 302 (460)
T PRK06541 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAM 302 (460)
T ss_pred EEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEE
Confidence 999999999999999999999999999999999999999999999 9999888889999999999999999997 99999
Q ss_pred eehHHHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceE
Q 017633 220 GGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 298 (368)
Q Consensus 220 ~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 298 (368)
++++++++.+... ..+.+++|+++|++++++++++++.+.++++.+++.++.+++++.|+++.. .+.+..+.+.|.++
T Consensus 303 ~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~ 381 (460)
T PRK06541 303 IASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFY 381 (460)
T ss_pred EEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEE
Confidence 9999998877643 334567899999999999999999998888999999999999999998754 66666788999999
Q ss_pred EEEeecCCCc--ccchhcccccHHHHHHHHHHHHcCeeecCC--CCCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVY--NFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++++...... ++... .........+.+.|+++||++.+. +... +.+++.++++|+++++++|++++.+
T Consensus 382 ~ie~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 382 GIELVKDKATKETFTDD-ESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred EEEEecCcccccCCcch-hhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998642210 00000 000011236788999999999874 3333 3568899999999999999999865
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=337.05 Aligned_cols=347 Identities=26% Similarity=0.392 Sum_probs=283.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||++|++.+++.+++++.... ..+++...++++.+++..+ +.+.++|++||++|++.|+++++.++++.+|
T Consensus 51 ~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~i 130 (421)
T PRK09792 51 VLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGV 130 (421)
T ss_pred hhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeE
Confidence 4679999999999999999985433 2367888999999999886 3479999999999999999999999899999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCCCCCCCCCCCCCCcccccCC----------CCHHHHHHHHHc--CCCCeEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF----------NDVSALENLFEN--NKGEIAAII 145 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~le~~~~~--~~~~~~~~~ 145 (368)
+.+.++|||.+...+..++... ....+.... ..+..+|. ++++.+++.+.+ +++++++++
T Consensus 131 i~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~-------~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi 203 (421)
T PRK09792 131 IAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP-------GSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAII 203 (421)
T ss_pred EEECCCcCCccHHHHhhcCCCcccccCCCCCC-------CCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEE
Confidence 9999999999998888766421 111111110 11222222 245788888874 246799999
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHH
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~ 224 (368)
+||+++++|...++++|+++|.++|++||+++|+||+|++| +.|..+++++++..||+++|||++++|+|+|+++++++
T Consensus 204 ~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~ 283 (421)
T PRK09792 204 FEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNAN 283 (421)
T ss_pred EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHH
Confidence 99999889988999999999999999999999999999999 88888888888999999999999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+++.+.. ..+.+|+++|++++++++++++.++++++.+++++..+++++.|+.+..+++....+.+.|.++|+++..
T Consensus 284 i~~~~~~---~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~ 360 (421)
T PRK09792 284 IMDAPAP---GGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFND 360 (421)
T ss_pred HHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecC
Confidence 9888763 3477899999999999999999998888999999999999999999877788777888989999999853
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
... +.+.......+...++++||.+.+.+. .. +.+++.++++|+++++++|++++.
T Consensus 361 ~~~------~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 361 PQT------GEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred Ccc------CCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 210 011223467889999999999975332 23 345788999999999999999875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=338.25 Aligned_cols=350 Identities=23% Similarity=0.284 Sum_probs=280.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
+.++||++|+|.+++.+++++..+. +++++...+|++.+++..+ +.++++|++||++|++.|+++++.+ +
T Consensus 55 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~ 134 (429)
T PRK06173 55 AALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEV 134 (429)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999885432 4578899999999999987 5789999999999999999999987 3
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCc-cccCCC-CCCCCCCCCCCcccc-cC--CCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLP-DSPGVPKGATYETLT-AP--FNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~--~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
++.+||.+.++|||.+..++..++... ....+. ..........+.... .+ ..+++.+++.+.+++++++++++||
T Consensus 135 ~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EP 214 (429)
T PRK06173 135 QRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEP 214 (429)
T ss_pred CCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcc
Confidence 577899999999999877777654311 111111 011110000000000 00 0146778888876667899999999
Q ss_pred c-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHH
Q 017633 149 V-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI 225 (368)
Q Consensus 149 ~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~ 225 (368)
+ .+.+|...++++|+++++++|++||+++|+||+|+|| ++|..++++++++.||+++|||+++|| +++|.+++++++
T Consensus 215 i~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i 294 (429)
T PRK06173 215 VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAI 294 (429)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHH
Confidence 7 8999999999999999999999999999999999999 889888888999999999999999999 599999999999
Q ss_pred HHHhcCC--CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 226 MEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 226 ~~~~~~~--~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
++.+... +.+.+++|++++++++++++++++.+.++++.++++++.+++++.|+++ ...+....+++.|.++.+.+.
T Consensus 295 ~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~ 373 (429)
T PRK06173 295 AQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMK 373 (429)
T ss_pred HHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeC
Confidence 8887531 2356778999999999999999999988889999999999999999875 334444567788999999884
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. +.....+++.|+++||.+.+.+.. .+.|++.++++|+++++++|++++.+
T Consensus 374 ~-------------~~~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 374 E-------------PVNMATLQPRFVEHGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred C-------------cccHHHHHHHHHHCCeEEEecCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 2 122467899999999999887632 23579999999999999999999865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=338.15 Aligned_cols=362 Identities=22% Similarity=0.214 Sum_probs=281.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCCC-CCeEEEeCChHHHHHHHHHHHHHhc---C-
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT---G- 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~gt~a~~~al~~~~~~~---~- 74 (368)
..++||++|+|.+++.+++++... ++.+++...+|++++++.+++ .++++|++||++|++.|+++++.+. +
T Consensus 65 ~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~ 144 (460)
T PRK12403 65 CTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGK 144 (460)
T ss_pred hhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCC
Confidence 457999999999999999988532 234678899999999999974 5899999999999999999998772 2
Q ss_pred --CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCccccc-------CCC--CHHHHHHHHH-cCCCCeE
Q 017633 75 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-------PFN--DVSALENLFE-NNKGEIA 142 (368)
Q Consensus 75 --~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--d~~~le~~~~-~~~~~~~ 142 (368)
+..|+.+..+|||++...+.+++........+...++.+...+..+.. +++ +++++++.+. +++++++
T Consensus 145 ~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ia 224 (460)
T PRK12403 145 PQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVA 224 (460)
T ss_pred CCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceE
Confidence 345777899999999888888765432211111111111000101110 011 1356766654 3446899
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-cceeee
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYG 220 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~v~ 220 (368)
++++||+.+++|.+.++++|+++++++|++||++||+||+++|| |+|..++++++++.||++++||++++|+ ++|.++
T Consensus 225 avI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v 304 (460)
T PRK12403 225 GFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLV 304 (460)
T ss_pred EEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEE
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999995 999999
Q ss_pred ehHHHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHHhcCCceEEeeccceE
Q 017633 221 GRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMF 298 (368)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 298 (368)
+++++++.+... +.+.+++|+++|++++++++++++.++++++.++++ ++.+++++.|+++..+++.+..+++.|.++
T Consensus 305 ~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~ 384 (460)
T PRK12403 305 LSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVA 384 (460)
T ss_pred ECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEE
Confidence 999998887532 234578999999999999999999998888999996 999999999999888888888999999999
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++++......... ..........+...++++|+.+.+.+.. .+.|++.++++|++++++++++++.+
T Consensus 385 gie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~ 452 (460)
T PRK12403 385 ALQFAEDKATRKR--FANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDR 452 (460)
T ss_pred EEEEccCcccccc--ccchhHHHHHHHHHHHhCCEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998643211000 0001112345677789999999865432 34578999999999999999999865
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=338.32 Aligned_cols=354 Identities=21% Similarity=0.259 Sum_probs=284.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCC-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+++||++|+|++++.+++++.... .++++...+|+++|++.+++ .+.++|++||++|++.|+++++.++++.+|+.
T Consensus 82 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~ 161 (459)
T PRK06082 82 VHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVS 161 (459)
T ss_pred hcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 5679999999999999999875432 35688999999999999974 58999999999999999999999989999999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCC--------HHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND--------VSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d--------~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+.++|||.+..++..++.......+ +...++.....+.....++++ ++.+++.+.+. ++++++++||+.+
T Consensus 162 ~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g 240 (459)
T PRK06082 162 LWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRN 240 (459)
T ss_pred EeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-CCEEEEEECCccC
Confidence 9999999998888777654332222 111222211112222223322 35678888653 5799999999988
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV 229 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~ 229 (368)
+ |...++++|+++++++|++||+++|+||+++|| |+|..++++++++.||++++||++++| +++|.+++++++....
T Consensus 241 ~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~ 319 (459)
T PRK06082 241 T-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAA 319 (459)
T ss_pred C-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhc
Confidence 7 577899999999999999999999999999999 999988999999999999999999988 5999999998876544
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
. ....+ +|+++|++++++++++++.++++++.++..++.+++++.|+++..+++.+..+++.|.++++++......
T Consensus 320 ~--~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~- 395 (459)
T PRK06082 320 Q--ISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHT- 395 (459)
T ss_pred c--CCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccc-
Confidence 3 12234 7999999999999999999988889999999999999999998888888889999999999998642110
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+.......+...++++|+.+.+.+... +.++++++++|++++++++++++.+
T Consensus 396 ----~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~ 451 (459)
T PRK06082 396 ----KERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAK 451 (459)
T ss_pred ----cCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 01112335678888999999998764343 3467899999999999999999865
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=337.36 Aligned_cols=353 Identities=29% Similarity=0.411 Sum_probs=285.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++++.... .++++...+|++.|.+..+ ..+.++|++||++|++.|+++++.++++++|
T Consensus 65 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~I 144 (441)
T PRK05769 65 VTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYI 144 (441)
T ss_pred hcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeE
Confidence 5789999999999999999885443 3457889999999999987 3589999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccCCC--C--------HHHHHH-HHHc--CCCCeEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFN--D--------VSALEN-LFEN--NKGEIAA 143 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--d--------~~~le~-~~~~--~~~~~~~ 143 (368)
+.+.++|||.+..++..++... ....+ +...++.....+..+..|++ | ++.+++ .+++ +++++++
T Consensus 145 i~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaa 224 (441)
T PRK05769 145 IAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAA 224 (441)
T ss_pred EEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 9999999999998887765421 11111 22233332222233333332 1 344666 3332 3568999
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeeh
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~ 222 (368)
+++||+++++|.+.++++|++++.++|++||+++|+||+|+|| +.|..++++++++.||++++||++++|+|+|+++++
T Consensus 225 vi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~ 304 (441)
T PRK05769 225 IIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGR 304 (441)
T ss_pred EEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCcccEEEEEe
Confidence 9999999999999999999999999999999999999999999 888888888899999999999999989999999999
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
+++++... ..+++|+++++++++++.++++.+++ ++.++++++.+++++.|+++..+++.+..+.+.|.++.+.+
T Consensus 305 ~~i~~~~~----~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~ 379 (441)
T PRK05769 305 AELMFLPP----GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVEL 379 (441)
T ss_pred hhhhhcCC----CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEe
Confidence 88875432 34678999999999999999999988 89999999999999999998877787778899999999988
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.... ..+.......+.+.|+++||.+.+.+...+ .+++.++++|++++++++++++.++
T Consensus 380 ~~~~-------~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 380 VKDR-------KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred ccCC-------ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5421 011223456788999999999987654443 4688899999999999999998753
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=337.43 Aligned_cols=349 Identities=25% Similarity=0.331 Sum_probs=285.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--C-CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
.+++||++|+|.+++.+++++... + +++++...++++.|++..+ +.++++|++||++|++.|+++++.+ +
T Consensus 53 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~ 132 (423)
T PRK05964 53 VATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEP 132 (423)
T ss_pred hccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999988542 2 4677889999999999997 5789999999999999999999987 4
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCC-----HHHHHHHHHcCCCCeEEEEEcc
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-----VSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~~~~~~~~~~~~~~~~ 148 (368)
++.+||.+.++|||.+..++...+.......+ .... .....+..|.+| ++++++.+.+++++++++++||
T Consensus 133 ~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~---~~~~--~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep 207 (423)
T PRK05964 133 GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALY---TPLL--FEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEP 207 (423)
T ss_pred CCcEEEEEcCCcCCccHHHHhcCCCccccccc---cCcC--CCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 67899999999999998888877654322211 1111 112334444455 8889999987667899999999
Q ss_pred -cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHH
Q 017633 149 -VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI 225 (368)
Q Consensus 149 -~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~ 225 (368)
+.+++|...++++|+++|+++|++||+++|+||+|+|| ++|..++++.+++.||++++||++++| +|+|++++++++
T Consensus 208 ~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i 287 (423)
T PRK05964 208 LVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEI 287 (423)
T ss_pred ccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHH
Confidence 57888999999999999999999999999999999999 888877788899999999999999987 899999999999
Q ss_pred HHHhcCC---CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 226 MEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 226 ~~~~~~~---~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
++.+... +...+++|+++|+++++++.++++.++++++.+++.++.+++++.|+++. ..+....+.+.|.++.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l 366 (423)
T PRK05964 288 FEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFR-DLPGVADVRVLGAIGAVEL 366 (423)
T ss_pred HHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc-cCCCeEEeecccEEEEEEe
Confidence 8887531 23457789999999999999999999888899999999999999998863 3444445677888888887
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.... .......+.+.|.++||.+.+.+.. .+.+++.++++|++++++++++++.++
T Consensus 367 ~~~~----------~~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 367 DRPV----------LERDGPALRAFALERGVLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred ccCc----------chhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 4311 0023568899999999999886532 234678899999999999999999875
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=333.74 Aligned_cols=356 Identities=25% Similarity=0.317 Sum_probs=282.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC---CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------
Q 017633 4 LIILFPSYLQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------ 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------ 73 (368)
.+++||++|++.+++.+++++.. .+..+++...++++++++..+ +.++++|++||++|++.|+++++.+.
T Consensus 57 ~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~ 136 (442)
T PRK13360 57 CVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEG 136 (442)
T ss_pred HhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 36799999999999999998743 234567888999999999997 57899999999999999999999873
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCC-cccccCCC---------CHHHHHHHHHcC-CCCe
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATY-ETLTAPFN---------DVSALENLFENN-KGEI 141 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~---------d~~~le~~~~~~-~~~~ 141 (368)
++.+||.+.++|||.+..++..++.......+. ...++.+.... .....++. .++++++.+..+ ++++
T Consensus 137 ~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 216 (442)
T PRK13360 137 SRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTI 216 (442)
T ss_pred CCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcE
Confidence 467899999999999988888776543322221 11111100000 00110110 256788888643 4689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v 219 (368)
+++++||+++++|.+.++++|+++|+++|++||+++|+||+|+|| ++|..+.++++++.||++++||++++| +|+|.+
T Consensus 217 aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav 296 (442)
T PRK13360 217 AAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAV 296 (442)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccceEEE
Confidence 999999999999999999999999999999999999999999999 999988889999999999999999988 799999
Q ss_pred eehHHHHHHhcCCC----CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 220 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 220 ~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
++++++++.+.... .+.+++||++++++++++.++++.++++++.++..++.+++++.|+++. +.+....+++.|
T Consensus 297 ~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~G 375 (442)
T PRK13360 297 FVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLR-DAPHVIDIRNLG 375 (442)
T ss_pred EEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cCCCeeeeeccc
Confidence 99999988775321 2357789999999999999999999888899999999999999998863 355555778888
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.+..+.+..... .......++.+.|+++||++.+.+.. .+.+++.+|++|+++++++|++++.++
T Consensus 376 l~~~~~l~~~~~--------~~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 376 LVGAVELAPRDG--------KPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred eEEEEEEecCCC--------CcchhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 888888753211 01123467888999999999876542 244679999999999999999998764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=332.55 Aligned_cols=336 Identities=27% Similarity=0.360 Sum_probs=277.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh------cCC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~------~~~ 75 (368)
++++||++|++.+++.+++++....+ +.++...++++++++.. +.+++++++||++|++.++++++.+ +++
T Consensus 42 ~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r 120 (389)
T PRK01278 42 VNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENS-FADKVFFTNSGAEAVECAIKTARRYHYGKGHPER 120 (389)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhC-CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999998743322 35778899999999987 4579999999999999999998766 345
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
++||+++++|||++...+..++.+.....+.. ....+..++++|++++++.++ +++++++++|+++++|.
T Consensus 121 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~G~ 190 (389)
T PRK01278 121 YRIITFEGAFHGRTLATIAAGGQEKYLEGFGP-------LVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEGGI 190 (389)
T ss_pred CEEEEECCCcCCCcHHHHhccCChhhcccCCC-------CCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCCCC
Confidence 68999999999999888877765432221111 012234566779999999997 47999999999998888
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
..++.+++++|+++|++||+++|+||+|+|| +.|..+..+.+++.||+++|||++++|+|+||+++++++++.+..
T Consensus 191 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~--- 267 (389)
T PRK01278 191 RPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTP--- 267 (389)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCCcceEEEEEcHHHHhccCC---
Confidence 8889999999999999999999999999999 877766667778999999999999999999999999998887763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchh
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
..+++|+++|+++++++.++++.++++++.++++++.++++++|+++....+ ....+.+.|.++++.+..
T Consensus 268 ~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~--------- 338 (389)
T PRK01278 268 GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV--------- 338 (389)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEec---------
Confidence 3467888999999999999999887677889999999999999998766555 445667777888876621
Q ss_pred cccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+..++++.|+++||.+.|++...+|+ ++.++++++++++++|++++.++
T Consensus 339 ------~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 339 ------PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAESL 389 (389)
T ss_pred ------CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence 24689999999999999987666554 57789999999999999998764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=335.44 Aligned_cols=356 Identities=26% Similarity=0.361 Sum_probs=279.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCCC-C-CeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~-~-~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||++|+|.+++.+++++.... .+.++...++++.|.+..++ . ++++|++||++|++.|+++++.++++.+|
T Consensus 65 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~i 144 (451)
T PRK06918 65 TINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGI 144 (451)
T ss_pred hcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcE
Confidence 4679999999999999999986443 23478899999999999974 3 69999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccCCC-------C--HHHHHHHHHc--CCCCeEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFN-------D--VSALENLFEN--NKGEIAAII 145 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-------d--~~~le~~~~~--~~~~~~~~~ 145 (368)
|.+.++|||.+..++...+... ....+ +...++.....+.....+.. + ++.+++.+.. +++++++++
T Consensus 145 i~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi 224 (451)
T PRK06918 145 ISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVV 224 (451)
T ss_pred EEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 9999999999998887765321 11111 11111111100111111110 1 2345554431 346899999
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHH
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~ 224 (368)
+||+++++|.++++++|+++|+++|++||+++|+||+|++| +.|..+++..+++.||++++||++++|+|+||++++++
T Consensus 225 ~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~ 304 (451)
T PRK06918 225 MEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKE 304 (451)
T ss_pred ECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHH
Confidence 99999999999999999999999999999999999999999 88877777888889999999999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+++.+.. ..+++|+++++++++++.++++.+.++++.+++++..++++++|+++..+++.+..+.+.|.++.+.+..
T Consensus 305 i~~~~~~---~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~ 381 (451)
T PRK06918 305 IMDESAP---GELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQ 381 (451)
T ss_pred HHhccCC---CCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEcc
Confidence 9888763 3477899999999999999999998888999999999999999999876666666778888888887742
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
... ...++......+.+.++++||.+.+++. ..++ +++.++++++++++++|++++.+
T Consensus 382 ~~~-----~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 382 DRK-----TKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQA 443 (451)
T ss_pred CCC-----cCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 110 0112334467788899999999998642 3333 56678999999999999999865
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=331.97 Aligned_cols=340 Identities=27% Similarity=0.353 Sum_probs=279.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc------CC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~------~~ 75 (368)
++++||++|+|.+++.+++++....+ ..++...++++.+++.. +.+.+++++||++|++.|+++++.+. ++
T Consensus 51 ~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~ 129 (403)
T PRK05093 51 VTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-FAERVFFANSGAEANEAAFKLARRYACDRHGPEK 129 (403)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 47899999999999999998743322 35677889999999987 44799999999999999999998773 57
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+.||.++++|||.+..++...+.......+. ....++..++++|++++++.+. ++++++++||+++++|.
T Consensus 130 ~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~---~~~aaiiiep~~~~gg~ 199 (403)
T PRK05093 130 TEIIAFHNSFHGRTLFTVSVGGQPKYSDGFG-------PKPADITHVPFNDLAAVKAVID---DHTCAVVVEPIQGEGGV 199 (403)
T ss_pred CeEEEEcCCcCCchhhhHhhcCChhhhhcCC-------CCCCCcEEeCCCCHHHHHHHhc---CCeEEEEEecccCCCCC
Confidence 7899999999999887777655432111111 1123567788899999999886 47999999999999998
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
..++++|+++|+++|++||+++|+||+|+++ +.|..++...+++.||+.||||++++|+|+||+++++++++.+..
T Consensus 200 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~vv~~~~i~~~l~~--- 276 (403)
T PRK05093 200 IPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPIGAMLTTAEIASHFKV--- 276 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCCcceEEEEEcHHHHhhcCC---
Confidence 8889999999999999999999999999999 777666666788899999999999999999999999999888863
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..+..+++++++.++++.++++.+.++++.++++++++++++.|+++....+....+++.|.++|+.+...
T Consensus 277 ~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~--------- 347 (403)
T PRK05093 277 GTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQ--------- 347 (403)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCc---------
Confidence 34557888999999999999998877788999999999999999987655555556667788888887321
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
......+++..|+++||.+.+.+...+|+ ++.++++++++++++|++++.++
T Consensus 348 --~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 348 --YKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred --chhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 01245789999999999999876566654 77889999999999999998653
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=331.92 Aligned_cols=340 Identities=20% Similarity=0.281 Sum_probs=276.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhC--C-CC-CeEEE-eCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAV--P-SI-EMVRF-VNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~--~-~~-~~v~~-~~~gt~a~~~al~~~~~~~~~ 75 (368)
++++||++|+|.+++.+++++... ....++...+|+++|++.. + +. +.++| ++||++|++.|+++++.++++
T Consensus 46 ~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr 125 (412)
T TIGR02407 46 ALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGR 125 (412)
T ss_pred hccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCC
Confidence 467999999999999999986322 1235788899999999975 3 22 35655 589999999999999999889
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC--------CCHHHHHHHHHcCC---CCeEEE
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--------NDVSALENLFENNK---GEIAAI 144 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~~~~~~---~~~~~~ 144 (368)
.+||.+.++|||.+..++..++.......+... ...+..+|. ++++.+++.+.++. ++++++
T Consensus 126 ~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aav 198 (412)
T TIGR02407 126 SNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVP-------LSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAV 198 (412)
T ss_pred CeEEEECCCcCCchHHHHHhcCCcccccCCCCC-------CCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEE
Confidence 999999999999999888887654322211100 012233333 34778888887532 468999
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccC-Cccceeeeeh
Q 017633 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGGR 222 (368)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~~ 222 (368)
++||+.+++|.+.++++|+++|+++|++||+++|+||+|+|| |+|..++++++++.||++++||++++ |+|+|+++++
T Consensus 199 i~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~pigav~~~ 278 (412)
T TIGR02407 199 ILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIK 278 (412)
T ss_pred EeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCccceeEEEEc
Confidence 999999999999999999999999999999999999999999 99988888889999999999999997 9999999998
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEE
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGF 300 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~ 300 (368)
+++ +.+. ...+++|+++|+++++++.++++. +.++++.+++.+..++++++++.+...++ ....+++.|.++|+
T Consensus 279 ~~~-~~~~---~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l 354 (412)
T TIGR02407 279 PEL-DVWK---PGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGI 354 (412)
T ss_pred hhh-hccC---CCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEE
Confidence 876 5443 345778999999999999999995 77777999999999999999999877776 55678888999999
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+. +.....++.+.++++||.+.+.+. .. +.+++.++++|+++++++|++++++
T Consensus 355 ~l~-------------~~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 355 ECG-------------DGDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred Eec-------------ChHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 883 233457889999999999987542 23 3478999999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=360.15 Aligned_cols=358 Identities=23% Similarity=0.261 Sum_probs=291.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcC-CCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+++||++|+|.+++.+++++. ....+.++...+++++|++.++ +.+.++|++||+||++.|+++++.++++.+||.+
T Consensus 633 ~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~ 712 (1013)
T PRK06148 633 VCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVL 712 (1013)
T ss_pred hhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4689999999999999999875 3345678889999999999998 4689999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCC-CCCCCCCCCCcccccCCC--C-------HHHHHHHHH---cCCCCeEEEEEcc
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFN--D-------VSALENLFE---NNKGEIAAIILEP 148 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--d-------~~~le~~~~---~~~~~~~~~~~~~ 148 (368)
.++|||.+..++..++........+. ..++.....+..+..+++ + .+++++.+. .+++.++++++||
T Consensus 713 ~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EP 792 (1013)
T PRK06148 713 DHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAES 792 (1013)
T ss_pred cCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcC
Confidence 99999999888877653221111111 011111111222333443 2 245666664 2346799999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
+.+++|.+.+|++|+++++++|++||+++|.||+++|| |+|. .++++++++.||+++++|++++|+++|.++++++++
T Consensus 793 v~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~ 872 (1013)
T PRK06148 793 IPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIA 872 (1013)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHH
Confidence 99999999999999999999999999999999999999 9996 788999999999999999999999999999999999
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
+.+... ..+++||++|++++++++++++.++++++.++.++..++++++|+++..+++.+..+.+.|.++++++....
T Consensus 873 ~~~~~g--~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~ 950 (1013)
T PRK06148 873 DSFDNG--MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDR 950 (1013)
T ss_pred hhccCC--CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCc
Confidence 888632 236799999999999999999999889999999999999999999998888888899999999999986422
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.. +.+.......+.+.|+++||++.+.+. .. +.+++.++++++++++++|++++.++
T Consensus 951 ~~-----~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 951 KT-----KAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred cc-----cCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 10 112233457789999999999987643 22 35789999999999999999998753
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=331.02 Aligned_cols=356 Identities=27% Similarity=0.338 Sum_probs=281.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------ 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------ 73 (368)
++++||++|+|.+++.+++++... +.+.++...+|+++|++..+ +.+.++|++||++|++.|+++++.+.
T Consensus 60 ~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~ 139 (445)
T PRK09221 60 CCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQG 139 (445)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 467999999999999999987432 24567888999999999987 57899999999999999999999773
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCc-ccccCCC---------CHHHHHHHHHcC-CCCe
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYE-TLTAPFN---------DVSALENLFENN-KGEI 141 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---------d~~~le~~~~~~-~~~~ 141 (368)
++.+||.+.++|||.+..++..++.......+ +...++....... ....++. ..+++++.+... .+++
T Consensus 140 ~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~i 219 (445)
T PRK09221 140 TRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTI 219 (445)
T ss_pred CCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcE
Confidence 36789999999999998888777654322211 1111111000000 0000000 146788888754 3689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v 219 (368)
+++++||+++++|.+.++++|+++++++|++||+++|+||+++|| |+|..+.++++++.||++++||++++| +++|.+
T Consensus 220 Aavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av 299 (445)
T PRK09221 220 AAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAV 299 (445)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceee
Confidence 999999999999999999999999999999999999999999999 999988899999999999999999988 799999
Q ss_pred eehHHHHHHhcCCC----CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 220 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 220 ~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
++++++++.+.... ...+++|++++++++++++++++.++++++.++..++.+++++.|+++ .+++....+++.|
T Consensus 300 ~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l-~~~~~v~~vrg~G 378 (445)
T PRK09221 300 IASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSL-KGLPHVIDIRNIG 378 (445)
T ss_pred EEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh-ccCCCEEEEecCc
Confidence 99999988775321 234678999999999999999999988889999999999999999986 3455556788888
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.+..+++..... .......++.+.|+++||.+.+.+.. .+.|++.++++|+++++++|++++.++
T Consensus 379 l~~~v~~~~~~~--------~~~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 379 LVAGIELAPRPG--------APGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred eEEEEEEecccc--------cccchHHHHHHHHHHCCeEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 888888853210 01122457889999999999876532 234689999999999999999998764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=306.11 Aligned_cols=353 Identities=42% Similarity=0.624 Sum_probs=286.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCce--
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRER-- 77 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~-- 77 (368)
...+||++|++.+++.+++.+..+ .++.+....++++.+.+..+ +.++|+|++|||+|++.|++.+++....+.
T Consensus 67 ~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~ 146 (433)
T KOG1401|consen 67 VTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPE 146 (433)
T ss_pred ccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCc
Confidence 567999999999999999988522 23333448889999988875 689999999999999999999998754444
Q ss_pred ----EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 78 ----IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 78 ----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+|.+.++|||.+.+++...+...+..++. ..-+++...+++|..++++.+..+.+.++++++||+.+.+
T Consensus 147 ~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~-------p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaG 219 (433)
T KOG1401|consen 147 KKTKFIAFENSYHGRTLGALSVTGNSKYGLPFD-------PIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAG 219 (433)
T ss_pred cceeEEEEecCcCCcchhHHHhhcccccCCCCC-------CCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCC
Confidence 99999999999999999876544332221 1445788888999999999999987789999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~ 232 (368)
|..+..+||+..|..+|+++|++||.||+++|| |.|..++.+++++.||+.|++|.++||+|+|++.+++++++.+...
T Consensus 220 G~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~ 299 (433)
T KOG1401|consen 220 GIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPG 299 (433)
T ss_pred CcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999987
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCCCcccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (368)
...+|++||++|++++.++..+++.+.+.++++++.+..+.+++++.+...+.+..... .+.+.++++....+.... .
T Consensus 300 ~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~-~ 378 (433)
T KOG1401|consen 300 DHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKF-A 378 (433)
T ss_pred CccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeechhhh-h
Confidence 77889999999999999999999999999999999999999999999988777654443 566677777665432111 1
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+...........+...+++.|+.+.|- ..+...+++|.++++++.+.+.+.++
T Consensus 379 d~~~~~~ll~~~~~~~~~~~gv~i~P~----~~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 379 DAAREQGLLILTLGKGLLEEGVRIAPI----YLLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred hhhhhhhHHHHHHhcccccceEEEecc----ccccccCcHHHHHHHHHHHHHHHHHh
Confidence 100001111122333344557888771 22344556899999999999988653
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=322.56 Aligned_cols=322 Identities=27% Similarity=0.346 Sum_probs=269.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+++||+||++++++.+++++.... .++++...+++++++++. +.+.+++++||++|++.|+++++.++++++||.+
T Consensus 35 ~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~ 113 (364)
T PRK04013 35 VNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV-NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAM 113 (364)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc-CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5789999999999999999985332 356788999999999987 4579999999999999999999998888999999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
..+|||.+..++..++.+.....+. ....++..++++|++++++.+. ++++++++||+.+++|...++++
T Consensus 114 ~~syHG~t~~~ls~~~~~~~~~~~~-------p~~~~~~~~~~~d~~~l~~~i~---~~~aAvivEpi~g~gG~~~~~~~ 183 (364)
T PRK04013 114 TNAFHGRTMGALSATWKPKYREDFE-------PLVPGFKHIPFNDVEAAKEAIT---KETAAVIFEPIQGEGGIVPAKEE 183 (364)
T ss_pred CCccccCchhhccCCCCcccccCCC-------CCCCCcEEecCCCHHHHHHHhc---CCcEEEEEcCCcCCCCCcCCCHH
Confidence 9999999988887766533222111 1123455677789999999886 57999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 241 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~ 241 (368)
|++++.++|++||+++|+||+++|+|+|..+.++++++.||+++++|++++|+++|.++.++++ . ...+++||
T Consensus 184 yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lggG~P~~a~~~~~~~----~---~~~~~~T~ 256 (364)
T PRK04013 184 FVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNGVPVSLTLTNFDV----E---RGKHGSTF 256 (364)
T ss_pred HHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEecccccCCceeEEEEecccc----c---CCCcCCCC
Confidence 9999999999999999999999999888888999999999999999999999999999888765 1 23478999
Q ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 242 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
++|+++++++.++++.++++++.++.++. +.++. .+....+++.|.++++++.. + .
T Consensus 257 ~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~--~~~v~~vRG~Gl~~gve~~~-------------~--~ 312 (364)
T PRK04013 257 GGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK--GERVVTTRGRGLMIGIVLKK-------------P--V 312 (364)
T ss_pred CcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc--cCcceeeeeCcEEEEEEeCC-------------c--H
Confidence 99999999999999999888887776654 22221 14456899999999999842 1 3
Q ss_pred HHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 322 ARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+.+.++++|+.+.+.+.+. +.|++.++++|+++++++|++++++
T Consensus 313 ~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~ 360 (364)
T PRK04013 313 GKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVIND 360 (364)
T ss_pred HHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence 568899999999998876444 4578999999999999999999875
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=326.53 Aligned_cols=334 Identities=26% Similarity=0.377 Sum_probs=272.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-----CCc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRE 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-----~~~ 76 (368)
++++||++|+|.+++.+++.+.... ...+++..+|++.+.+.. +.++++|++||++|++.|+++++.+. ++.
T Consensus 47 ~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~ 125 (395)
T PRK03715 47 VNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS-CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAY 125 (395)
T ss_pred hccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc-CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCc
Confidence 6789999999999999998874322 245678888999988764 45799999999999999999998662 457
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+||.+.++|||.+...+..++.......+ |... .+...+++|++++++.+. ++++++++||+++++|.
T Consensus 126 ~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~ 194 (395)
T PRK03715 126 EIITFDHSFHGRTLATMSASGKPGWDTIFAPQVP--------GFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGV 194 (395)
T ss_pred EEEEECCCcCCChHHHHhhcCCcccccCCCCCCC--------CceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCC
Confidence 89999999999999888887654221111 1111 223345678999999886 47899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+.++++|+++|+++|++||+++|+||+|+|| |+|..++++++++.||++++||++++|+++|.+++++++.. +. .
T Consensus 195 ~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G~p~~av~~~~~i~~-~~---~ 270 (395)
T PRK03715 195 IPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGGVPLAALLAKAEVAV-FE---A 270 (395)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCCcceEEEEEcccccc-cc---C
Confidence 9999999999999999999999999999999 99998888999999999999999999999999999888752 22 2
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..+++||+++++++++++++++.++++++.++++++.++++++|+++..+.++ ..+++.|.++.+++...
T Consensus 271 ~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~i-~~vrG~Glm~~i~l~~~--------- 340 (395)
T PRK03715 271 GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGL-EGERGEGLLRALLLGKD--------- 340 (395)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCCc-CeEEcceeEEEEEecCc---------
Confidence 34678999999999999999999988889999999999999999988766663 35778899999988421
Q ss_pred ccccHHHHHHHHHHHHc---CeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGMLEE---GVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~---Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....+.+.+.+. ||.+.+...+.+ .+++.++++|+++++++|++++.++
T Consensus 341 -----~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 341 -----IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred -----hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 123344444444 999976544444 4689999999999999999998764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=329.14 Aligned_cols=347 Identities=18% Similarity=0.241 Sum_probs=275.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------ 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------ 73 (368)
++++||++|++.+++.+++++..+. +.+++...+|+++|++..+ +.++++|++||++|++.|+++++.+.
T Consensus 51 ~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~ 130 (422)
T PRK05630 51 SAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHP 130 (422)
T ss_pred HhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 5689999999999999999885432 3567888999999999987 57899999999999999999999873
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccCCCC----HHHHHHHHHcCCCCeEEEEEc
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPFND----VSALENLFENNKGEIAAIILE 147 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d----~~~le~~~~~~~~~~~~~~~~ 147 (368)
++.+|+.+.++|||.+..++..++... ....+ +..........+.....+.++ .+.+++.+. ++++++++|
T Consensus 131 ~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~iAAvi~E 207 (422)
T PRK05630 131 ERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---ETVAAIIIE 207 (422)
T ss_pred CCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---hceEEEEEe
Confidence 467899999999999988887765311 11111 111111100001000111112 345555554 489999999
Q ss_pred cc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHH
Q 017633 148 PV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRD 224 (368)
Q Consensus 148 ~~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~ 224 (368)
|. .+.+|...++++|+++++++|++||+++|+||+++|| ++|..++++++++.||+++++|+++|| +++|+++++++
T Consensus 208 Pi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~ 287 (422)
T PRK05630 208 PIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDK 287 (422)
T ss_pred chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHH
Confidence 96 8889999999999999999999999999999999999 889888889999999999999999999 59999999999
Q ss_pred HHHHhcCC---CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 225 IMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 225 ~~~~~~~~---~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
+.+.+... +.+.+++||++|+++++++.++++.+.++++.+++.++.+++++.|+.+ .+.+....+++.|.++.++
T Consensus 288 i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l-~~~~~v~~vRg~Gl~~~ie 366 (422)
T PRK05630 288 VAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPL-AHLPGVADVRVLGAIGVVE 366 (422)
T ss_pred HHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccccEEEEE
Confidence 98887532 2346789999999999999999999988889999999999999999875 3455556788999999999
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+... .....+.+.++++|+++.+.+.. .+.|++.++++|+++++++|++++..
T Consensus 367 ~~~~-------------~~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 367 MEQP-------------VDMEEATQAAVDHGVWLRPFGRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred ECCc-------------ccHHHHHHHHHHCCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 8521 12357888999999999876532 23478999999999999999999853
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=330.20 Aligned_cols=340 Identities=21% Similarity=0.296 Sum_probs=272.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC---CCCCCChhHHHHHHHHHhhCC---CCC-eEEE-eCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFPSYLQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP---SIE-MVRF-VNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~---~~~-~v~~-~~~gt~a~~~al~~~~~~~~~ 75 (368)
++++||++|+|.+++.+++++.. .....++...+|++++++... +.+ .++| ++||++|++.|+++++.++++
T Consensus 50 ~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr 129 (425)
T PRK09264 50 ALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGR 129 (425)
T ss_pred hccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999998632 123457788899999999752 233 5656 589999999999999999999
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC--------CCHHHHHHHHHcCC---CCeEEE
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--------NDVSALENLFENNK---GEIAAI 144 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~~~~~~---~~~~~~ 144 (368)
.+||.+.++|||.+..++..++.......+... ...+..+|+ +|++++++.+.++. ++++++
T Consensus 130 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aav 202 (425)
T PRK09264 130 TNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVP-------LNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAV 202 (425)
T ss_pred CeEEEECCccCCccHHHHHhcCCcccccCCCCC-------CCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEE
Confidence 999999999999999888887654322111000 012233333 36788999987532 468999
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccC-Cccceeeeeh
Q 017633 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGGR 222 (368)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~~ 222 (368)
++||+.+++|.+.++++|+++|+++|++||+++|+||+|+|| |+|..+.++++++.||++++||++++ |+|+|+++++
T Consensus 203 i~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~ 282 (425)
T PRK09264 203 IVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIK 282 (425)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEc
Confidence 999999999999999999999999999999999999999999 88888888889999999999999997 8999999998
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHH-HHHccCCHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeccceEEE
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGF 300 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~ 300 (368)
+++ ..+. ...+++|+++|+++++++++++ +.+.++++.++++++.++++++|+++..+++. ...+++.|.++++
T Consensus 283 ~~i-~~~~---~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i 358 (425)
T PRK09264 283 PEL-DVWK---PGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGI 358 (425)
T ss_pred hhh-hccC---CCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEE
Confidence 886 3443 3346789999999999999999 66666679999999999999999988766653 3467778889898
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+. +......+.+.++++||.+.+.+.. .+ .+++.++++++++++++|++++.+
T Consensus 359 ~l~-------------~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 359 DFG-------------DGELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred Eec-------------ChHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 873 2334578899999999999876532 22 357889999999999999998864
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=300.71 Aligned_cols=342 Identities=26% Similarity=0.311 Sum_probs=291.7
Q ss_pred ceeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh-------c
Q 017633 3 QLIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-------T 73 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~-------~ 73 (368)
+..+.||.||.+++++.++.++++.. -+.++...++.+.+.++++ .+.++-.++|.||++.|++++|.+ +
T Consensus 69 saVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~-~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip 147 (427)
T KOG1402|consen 69 SAVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFG-YDKVLPMNTGAEAVETACKLARKWGYRKKNIP 147 (427)
T ss_pred hhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcC-cceeeecccchhHHHHHHHHHHHHHHhhccCC
Confidence 45788999999999999999985432 2345677788888888874 467888999999999999999855 1
Q ss_pred -CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 74 -GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 74 -~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
....|+...++|||.+.++..++..+.-+..+ |...+ .+..+|++|.++|+.+++. ++.+++++||+++
T Consensus 148 ~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~-------~~~~v~Y~d~eale~~l~~--~~vaaFivEPIQG 218 (427)
T KOG1402|consen 148 KNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPG-------VVDKVPYGDAEALEVALKS--PNVAAFIVEPIQG 218 (427)
T ss_pred ccceeEEEecccccCceeeeEEecCCcchhhccCCCCCC-------cceeeccCCHHHHHHHhcC--CCeeEEEeecccc
Confidence 23456667999999999999998886433333 22222 2567889999999999996 6899999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV 229 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~ 229 (368)
..|.+.||++|+++.+++|.+|++++|.||+|+|+ |+|++.++++.++.||++.++|+++|| +|++.++++++++..+
T Consensus 219 EaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~ 298 (427)
T KOG1402|consen 219 EAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNI 298 (427)
T ss_pred ccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhcc
Confidence 99999999999999999999999999999999999 999999999999999999999999999 6999999999999887
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
. +.-|++||++|+++++++.++++.+.++.+.++.....+.++.+|+++..+.+ ....+++.|.+..+.+...+
T Consensus 299 ~---pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~-- 373 (427)
T KOG1402|consen 299 K---PGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSK-- 373 (427)
T ss_pred C---CCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEecccc--
Confidence 7 55699999999999999999999999999999999999999999999876654 45688999999999887543
Q ss_pred ccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 309 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
....++.+++-.|.++|+...|-....+| +++.++++|+++.+++|++.+.
T Consensus 374 -------~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 374 -------TSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred -------ccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 13456778899999999999987655554 6899999999999999998874
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=326.92 Aligned_cols=343 Identities=26% Similarity=0.331 Sum_probs=281.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc--------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-------- 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-------- 73 (368)
.+++||++|+|++++.+++++.... .+.++...+|++.++++++ .+.+++++||++|++.|+++++.+.
T Consensus 86 ~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~-~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~ 164 (474)
T PLN02624 86 AVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFG-YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPK 164 (474)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcC-CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4579999999999999999985433 2567888999999999884 5799999999999999999998752
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++..|+.+.++|||.+..++...+.......+. ...+.+..++++|++.+++.++.++++++++++||+++++
T Consensus 165 ~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~ 237 (474)
T PLN02624 165 NEAIIVSCCGCFHGRTLAAISMSCDNEATRGFG-------PLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEA 237 (474)
T ss_pred CCcEEEEECCCcCCCCHHHhhcCCCccccccCC-------CCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCC
Confidence 234688899999999998888776532221110 1112355678889999999998766789999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++|+++|.++|++||+++|+||+|+|| +.|..+..+..++.||++++||++++| +|+|++++++++++.+.
T Consensus 238 G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~- 316 (474)
T PLN02624 238 GVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIK- 316 (474)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhc-
Confidence 999999999999999999999999999999999 888777777788999999999999966 89999999988887775
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeccceEEEEeecCCCccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
...+++|+++++++++++.++++.+.++++.++..++.++++++|.++..+++. ...+.+.|.++.+.+....
T Consensus 317 --~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~---- 390 (474)
T PLN02624 317 --PGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK---- 390 (474)
T ss_pred --cCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC----
Confidence 334678889999999999999999877788889999999999999997666652 3346677888887764211
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+.+....++++.|+++||.+.+.+...++ +++.++++++++++++|++++.
T Consensus 391 -----~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~ 443 (474)
T PLN02624 391 -----LGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLE 443 (474)
T ss_pred -----cChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 01234578999999999999987655554 4688999999999999998874
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=324.33 Aligned_cols=331 Identities=24% Similarity=0.303 Sum_probs=269.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~ 73 (368)
.+++||++|+|.+++.+++++.... ...++...+|+++++++.+ .+++++++||++|++.|+++++.+ +
T Consensus 51 ~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~ 129 (396)
T PRK04073 51 AVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTG-KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEP 129 (396)
T ss_pred hccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCC-CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCC
Confidence 3579999999999999999875332 3466788999999999875 469999999999999999999876 4
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++||.++++|||.+..++.+.+.+.....+ . ...+.+..++++|++++++.+. +++++++++|+++++
T Consensus 130 ~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~d~~~l~~~i~---~~~~~viiep~~~~~ 199 (396)
T PRK04073 130 NKAEIIACEGNFHGRTMAAVSLSSEEEYKRGF---G----PMLPGIKKIPYGDLEALKAAIT---PNTAAFLVEPIQGEA 199 (396)
T ss_pred CCCEEEEECCCcCCCCHHHHhhcCCcccccCC---C----CCCCCceEeCCCCHHHHHHhcc---cCeEEEEEcCccCCC
Confidence 56889999999999998888776643211111 0 0112345677779999999886 478999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccC-CccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++|+++|.++|++||+++|+||+|++| +.|..+..+..++.||++++||++++ |+|+|++++++++++.+..
T Consensus 200 G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~ 279 (396)
T PRK04073 200 GINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTP 279 (396)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcC
Confidence 999999999999999999999999999999999 77766666777889999999999995 5999999999999988863
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+.+|+++++++++++.++++.+.++++.++..++++++++.|+++. .+....+.+.|.++++++..
T Consensus 280 ---~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~--~~~i~~~~~~g~~~~~~~~~------- 347 (396)
T PRK04073 280 ---GSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEID--NPMIKEVRGRGLFIGVELNE------- 347 (396)
T ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc--CCcccceecceEEEEEEecc-------
Confidence 346688899999999999999988777888899999999999988752 22233556677887877621
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHH
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
...++++.|+++||.+.+.+...+| +++.++++++++++++|++++
T Consensus 348 --------~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 348 --------PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred --------hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 2468899999999999876544554 468899999999999999876
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=322.02 Aligned_cols=335 Identities=27% Similarity=0.351 Sum_probs=274.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+++||++|++.+++.+++++... ..+++....++++++++.++. .+++++++||++|++.++++++. .++++++
T Consensus 54 ~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii 132 (398)
T PRK03244 54 VNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIV 132 (398)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEE
Confidence 578999999999999999987422 235667788999999999872 47999999999999999998876 4667888
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
.++++|||+....+...+.......+. ....++..+|++|++++++.+. +++++++++|+++++|.+.++
T Consensus 133 ~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~ 202 (398)
T PRK03244 133 AAEGGFHGRTMGALALTGQPAKRAPFE-------PLPGGVEHVPYGDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPP 202 (398)
T ss_pred EECCCcCCccHHHHhccCCcccccCCC-------CCCCCceEeCCCCHHHHHHhhc---CCeEEEEEecccCCCCCcCCC
Confidence 888999999888777765432211111 1123456677779999999885 478999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcccc
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
++|+++|.++|++||+++|+||+|++| +.|..+.++..++.||+++|||++++|+|+|++++++++++.+.. ..+.
T Consensus 203 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G~~ig~~~~~~~~~~~~~~---~~~~ 279 (398)
T PRK03244 203 AGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGGLPIGACLAFGPAADLLTP---GLHG 279 (398)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCCcccEEEEEcHHHHhhccC---CCCc
Confidence 999999999999999999999999999 877766667788999999999999999999999999988888763 3466
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
+|++.|+++++++.++++.+.++++.+++.++.+++++.|+++. ++....+.+.|.++++.+..
T Consensus 280 ~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~v~g~g~~~~i~~~~-------------- 343 (398)
T PRK03244 280 STFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEALG--HPLVDHVRGRGLLLGIVLTA-------------- 343 (398)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC--CCceeeEeeccEEEEEEEec--------------
Confidence 88999999999999999988777889999999999999988752 33334566788898988731
Q ss_pred HHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhhC
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....++.+.|+++||.+.+.+...+| +++.++++|+++++++|++++.++
T Consensus 344 ~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 344 PVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAA 395 (398)
T ss_pred cHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 13567899999999999886545544 467789999999999999998653
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=349.58 Aligned_cols=357 Identities=24% Similarity=0.280 Sum_probs=285.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..++||++|+|.+++.+++.+.... .+..+...+++++|++.++ +.+.++|++||++|++.|+++++.++++.+||.+
T Consensus 594 ~~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~ 673 (972)
T PRK06149 594 VTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSV 673 (972)
T ss_pred ccccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEE
Confidence 3479999999999999999875433 2456788999999999997 5789999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhhcCCCccccCC-CC-CCCCCCCCCCcccccCCC--C-----HHHHHHHHH---cCCCCeEEEEEccc
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGL-PD-SPGVPKGATYETLTAPFN--D-----VSALENLFE---NNKGEIAAIILEPV 149 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--d-----~~~le~~~~---~~~~~~~~~~~~~~ 149 (368)
..+|||.+..+...++........ .. ..++.....++.+..++. + .+++++.+. ++.++++++++||+
T Consensus 674 ~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv 753 (972)
T PRK06149 674 LEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPV 753 (972)
T ss_pred eCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEccc
Confidence 999999988776654431111000 00 011111112222332221 2 244444443 34468999999999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
.+++|.+.++++|++++.++|++||+++|+||+++|| ++|. ++.++++++.||++++||++++|+++|++++++++++
T Consensus 754 ~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~ 833 (972)
T PRK06149 754 YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAE 833 (972)
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHh
Confidence 9999999999999999999999999999999999999 9987 5688899999999999999999999999999999998
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+...+ .+++|+++|++++++++++++.++++++.++.++..++++++|+++..+++.+..+++.|.++++++.....
T Consensus 834 ~~~~~~--~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~ 911 (972)
T PRK06149 834 ALEAEG--YFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQ 911 (972)
T ss_pred hhccCC--cccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcc
Confidence 886422 345778999999999999999998899999999999999999999988888888999999999999853211
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. +.+.......+.+.|+++||.+.+.+. ..+ .++++++++++++++++|++++.+
T Consensus 912 ~-----~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 912 T-----LEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred c-----CCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 0 012233457899999999999998753 333 378999999999999999999865
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=321.66 Aligned_cols=348 Identities=20% Similarity=0.251 Sum_probs=272.6
Q ss_pred eeccCCCcHHHHH--HHHHHHHcCC-----CCCCCChhHHHHHHHHHhhC-C-CCCeEEEeCChHHHHHHHHHHHHHhc-
Q 017633 4 LIILFPSYLQVLA--ALGETMKKGT-----SFGAPCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACMGVLRLARAFT- 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~--a~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~-~-~~~~v~~~~~gt~a~~~al~~~~~~~- 73 (368)
++++||++|+|.+ ++.+++.+.. ...+.++...++.+.+++.. + +.++++|++||+||++.|+++++.+.
T Consensus 56 ~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~ 135 (443)
T PRK08297 56 SSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKS 135 (443)
T ss_pred hhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhh
Confidence 5789999999999 9999997632 22456788899999999987 4 57899999999999999999998762
Q ss_pred -----------CCceEEEEcCCCCCCchhhhhhcCCCc-cccCCCCCCC--CCCCCC-----C-c---ccccCCCCHHHH
Q 017633 74 -----------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPG--VPKGAT-----Y-E---TLTAPFNDVSAL 130 (368)
Q Consensus 74 -----------~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~-----~-~---~~~~~~~d~~~l 130 (368)
++.+||.+.++|||.+..++..++... ....++.... ++.... . . ....+.++++++
T Consensus 136 ~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (443)
T PRK08297 136 RKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQA 215 (443)
T ss_pred ccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHH
Confidence 246799999999999998888876422 1111111100 100000 0 0 111112246777
Q ss_pred HHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhh
Q 017633 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 209 (368)
Q Consensus 131 e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~ 209 (368)
++.+.+++++++++++||+.+++|.+.+|++|+++++++|++||+++|+||+++|| |+|..++++++++.||++++||+
T Consensus 216 ~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~ 295 (443)
T PRK08297 216 RAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKK 295 (443)
T ss_pred HHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccc
Confidence 88888777899999999999999999999999999999999999999999999999 99988889999999999999999
Q ss_pred ccCCccceeeeehHHHHHHhcC--CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 210 IGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 210 ~~~G~~iG~v~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
++ +|.+++.+++.+.... .....+++|+++|+++++++.++++.+.++++.++..++.++++++|+++..+++.
T Consensus 296 l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 371 (443)
T PRK08297 296 TQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPA 371 (443)
T ss_pred cc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 84 4445454443322210 01234789999999999999999999988899999999999999999998777764
Q ss_pred ce-EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHH
Q 017633 288 AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~ 364 (368)
.. .+++.|.++++++. +......+.+.|+++||.+.+.+...+ +|++.++++|+++++++|+++
T Consensus 372 ~~~~vrg~G~~~~i~~~-------------~~~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~ 438 (443)
T PRK08297 372 VVSNVRGRGLMCAFDLP-------------TTADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRA 438 (443)
T ss_pred cceeeeccceEEEEEec-------------CHHHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHH
Confidence 43 77888999999873 223356789999999999988764443 468999999999999999999
Q ss_pred HhhC
Q 017633 365 LRQI 368 (368)
Q Consensus 365 l~~~ 368 (368)
+.++
T Consensus 439 l~~~ 442 (443)
T PRK08297 439 LPEV 442 (443)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=315.01 Aligned_cols=333 Identities=29% Similarity=0.391 Sum_probs=271.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
++++||++|++++++.+++++.... ....+...++++.+.+..+ .+.+++++||++|++.|+++++.++++++|+++
T Consensus 40 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~ 118 (377)
T PRK02936 40 VCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA-GDLVFFCNSGAEANEAALKLARKHTGKSKIVTF 118 (377)
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC-CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4589999999999999999874222 2346777888888887664 368999999999999999988877788889999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|||.+...+...+.......+. .....+..++++|++++++.+. ++++++++||+++++|...++++
T Consensus 119 ~~~~Hg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~ 188 (377)
T PRK02936 119 EQSFHGRTFGTMSATGQEKIKEGFG-------PLLPGFTHVPFNDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPA 188 (377)
T ss_pred CCCcCCCcHHhhhccCCccccccCC-------CCCCCceEeCCCCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHH
Confidence 9999999887777665422111111 1112345677789999999886 47899999999998888888999
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcccccc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t 240 (368)
++++|+++|++||+++|+||+|++| +.|..+..+.+++.||++++||++++|+|+||+++++++++.+.. ..+.+|
T Consensus 189 ~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~ig~v~~~~~~~~~~~~---~~~~~t 265 (377)
T PRK02936 189 FLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNGIPVGAMIGKKELGTAFGP---GSHGST 265 (377)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCCCccEEEEEcHHHHhhccC---CCCCCC
Confidence 9999999999999999999999999 777665666778889999999999999999999999999888863 345678
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
+++++++++++.++++.+..+++.++++++.+++++.|++.....+....+.+.|.++|+.+.. .
T Consensus 266 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~---------------~ 330 (377)
T PRK02936 266 FGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE---------------E 330 (377)
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc---------------h
Confidence 8899999999999999886678899999999999999998765555544556677888888631 1
Q ss_pred HHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 321 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
..++.+.|.++||.+.+.+...+|+ ++.++++++++++++|++++
T Consensus 331 ~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 331 VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 4678899999999999887665654 47899999999999998864
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=318.23 Aligned_cols=349 Identities=36% Similarity=0.512 Sum_probs=282.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCC---CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+++||++|++++++.+++.....+.. ..+...++++.+++.++ +.+++++++||++|++.++++++.+.++++|+
T Consensus 47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii 126 (413)
T cd00610 47 VLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKII 126 (413)
T ss_pred hhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 457999999999999999977555433 37789999999999998 68999999999999999999988777889999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC-----------CHHHHHHHHHcCCCCeEEEEEcc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----------DVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
+++++||++....+...+... ..........++..+|++ |++++++.++++++++++++++|
T Consensus 127 ~~~~~yhg~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p 199 (413)
T cd00610 127 SFEGAYHGRTLGALSLTGSKK-------YRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEP 199 (413)
T ss_pred EECCCcCCccHHHHHhcCCcc-------ccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 999999999888777765431 111111222345556665 78999999987656899999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+++++|...++++|+++|+++|++||+++|+||+|+++ +.|..+..+.+++.||++++||++++|+|+||+++++++++
T Consensus 200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~ 279 (413)
T cd00610 200 IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMD 279 (413)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCccccEEEEEcHHHHH
Confidence 99999999999999999999999999999999999998 77766667778889999999999998899999999999988
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+. .....+.+|++.++++++++.++++.+.++++.+++.++.+++++.|+++....+.+....+.+.++++.+.....
T Consensus 280 ~~~-~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 358 (413)
T cd00610 280 AFP-AGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRA 358 (413)
T ss_pred hhc-cCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCC
Confidence 862 1234566888999999999999999987778899999999999999998765544444556778888888753211
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
.. .++.....++++.|+++||.+.+++...++ +++.++++++++++++|++++
T Consensus 359 ~~-----~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 359 TK-----PPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred cC-----CcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 00 012245678999999999999998544444 577889999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=315.60 Aligned_cols=342 Identities=19% Similarity=0.181 Sum_probs=263.5
Q ss_pred ceeccCCCcHHHHHHHHHH--HHcCC-CCCCCChhHHHHHHHHHh----hCC-CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFPSYLQVLAALGET--MKKGT-SFGAPCLLENVLAEMVIS----AVP-SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~~--~~~~~-~~~~~~~~~~~l~~~l~~----~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.++++||++|+|.+++.++ ..... ...++++...++++.+.+ ..+ +.++++|++||++|++.|+++++.+.+
T Consensus 68 ~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~ 147 (464)
T TIGR00699 68 SSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYR 147 (464)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3578999999999999984 33321 123456677778888754 566 578999999999999999999987621
Q ss_pred ---------------------------CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcc-----c--
Q 017633 75 ---------------------------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYET-----L-- 120 (368)
Q Consensus 75 ---------------------------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 120 (368)
+.+||.+.++|||.+..++..++........+......+...+.. .
T Consensus 148 ~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~ 227 (464)
T TIGR00699 148 SKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHV 227 (464)
T ss_pred hcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCccccccccc
Confidence 237999999999999999988765321110110011111000000 0
Q ss_pred ----ccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccc
Q 017633 121 ----TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 195 (368)
Q Consensus 121 ----~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~ 195 (368)
....++++++++++.++.++++++++||+.+++|.+.++++|+++++++|++||++||+||+++|| ++|..++++
T Consensus 228 ~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e 307 (464)
T TIGR00699 228 KENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHE 307 (464)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHH
Confidence 001124677888887666789999999999999999999999999999999999999999999999 889888999
Q ss_pred ccCCC--cchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 017633 196 YFGVT--PDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272 (368)
Q Consensus 196 ~~~~~--~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 272 (368)
++++. ||++++||+++ +|+ ++.++ .+.......+++|+++|+++++++.++++.++++++.++..+..+
T Consensus 308 ~~gv~~~PDi~t~gK~lg~gG~----~~~~~----~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~ 379 (464)
T TIGR00699 308 HWNLDDPPDMVTFSKKFQTAGY----FFHDP----AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGD 379 (464)
T ss_pred hcCCCCCCCEEEehhhhccCCc----cccch----hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99997 99999999996 564 22222 222223456889999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhcC-CceEEe--eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--cccc
Q 017633 273 ELTQGIIDAGKKAG-HAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSL 347 (368)
Q Consensus 273 ~l~~~l~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~ 347 (368)
++++.|+++..+++ ....++ +.|.++++++. +......+.+.++++|+++.+.+...+ .|++
T Consensus 380 ~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~-------------~~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl 446 (464)
T TIGR00699 380 YLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP-------------DEAKRDKLLKKARNNGVNIGGCGVKAIRLRPML 446 (464)
T ss_pred HHHHHHHHHHHhCCCceeeecccCeEEEEEEecC-------------CHHHHHHHHHHHHHCCcEEecCCCCeEEEeCCC
Confidence 99999999877777 555776 88999998862 223357889999999999988764443 4689
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 017633 348 AHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 348 ~~~~~~i~~~~~~l~~~l 365 (368)
.++++|+++++++|++++
T Consensus 447 ~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 447 VFQKHHADIFLEIISKII 464 (464)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=314.96 Aligned_cols=350 Identities=21% Similarity=0.269 Sum_probs=277.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------ 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------ 73 (368)
..++||++|++.+++.+++++.... +.+++...++.+.+++..+ +.++++|++||++|++.|+++++.+.
T Consensus 56 ~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~ 135 (427)
T TIGR00508 56 AAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEK 135 (427)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCC
Confidence 4589999999999999999875322 3467788999999999987 56899999999999999999998763
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcc-cccCC--CCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYET-LTAPF--NDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~--~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
++.+||.+.++|||.+...+...+... ....+ +..........+.. ...++ +|++++++.+.++.+++++|++||
T Consensus 136 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEP 215 (427)
T TIGR00508 136 NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEP 215 (427)
T ss_pred CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 467899999999999888777765421 11101 10111100000001 11112 257888888876556899999999
Q ss_pred c-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCc-cceeeeehHHH
Q 017633 149 V-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDI 225 (368)
Q Consensus 149 ~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~-~iG~v~~~~~~ 225 (368)
+ .+.+|...++.+|+++|+++|++||+++|+||+|+|| ++|..+..+++++.||++++||+++||+ +++.++.++++
T Consensus 216 v~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~ 295 (427)
T TIGR00508 216 IVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKV 295 (427)
T ss_pred hhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHH
Confidence 7 7778899999999999999999999999999999999 8888888888999999999999999994 99999999999
Q ss_pred HHHhcCC--CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 226 MEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 226 ~~~~~~~--~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
++.+... ..+.+++|+.+|++++++++++++.+.++++.++++++.+++++.|+++. ..+....+.+.|.++.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~vrg~G~~~~i~~~ 374 (427)
T TIGR00508 296 AQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLR-KNPVVKDVRVLGAIGVVEMY 374 (427)
T ss_pred HHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cCCCEEeEeccccEEEEEEC
Confidence 8888642 23457789999999999999999999888899999999999999999864 33334467788999999884
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. +.....+.+.|+++||.+.+.+.. .+.+++.++++|++++++++++++.+
T Consensus 375 ~-------------~~~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 375 K-------------PVNVEELQKKFVEQGVWIRPFGKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred C-------------ccCHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 2 112367899999999999876432 12468889999999999999999865
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=309.28 Aligned_cols=335 Identities=27% Similarity=0.376 Sum_probs=273.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC-----c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR-----E 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~-----~ 76 (368)
.+++||++|++.+++.+++.+... ..++++...++++++++.. +.+++++++||++|++.++++++.+.++ +
T Consensus 50 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~ 128 (396)
T PRK02627 50 VNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS-GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKP 128 (396)
T ss_pred hccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc-CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCC
Confidence 568999999999999999876421 2346788999999999986 4589999999999999999988776554 7
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.++++.++|||.........+.......+.. .......++++|++++++++. +++++++++|+++++|..
T Consensus 129 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~ 198 (396)
T PRK02627 129 EIITAENSFHGRTLATLSATGQPKYQEGFEP-------LVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVN 198 (396)
T ss_pred eEEEECCCcCcccHHHHHhcCCccccccCCC-------CCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCc
Confidence 8999999999998887777655332111110 012234566779999999985 579999999998888877
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
.++++++++|.++|++||++||+||+|++| +.|..+..+..++.||+++|||++++|+|+||+++++++++.+.. .
T Consensus 199 ~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G~rig~~~~~~~~~~~~~~---~ 275 (396)
T PRK02627 199 PADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTP---G 275 (396)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCCcccEEEEEcHHHHhccCC---C
Confidence 888889999999999999999999999999 777666666778889999999999999999999999998888763 3
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
.+..+++.++++++++.++++.+.++++.++++++.++++++|.++...++....+.+.|.++|+.+.
T Consensus 276 ~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~------------ 343 (396)
T PRK02627 276 DHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELD------------ 343 (396)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEec------------
Confidence 35678899999999999999988777888999999999999999887666544456667788888761
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..++++.|+++||.+.+++...+++ ++.++++++++++++|++++++
T Consensus 344 ---~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 344 ---RPAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred ---CcHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence 124789999999999999976555554 5688999999999999999865
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=309.69 Aligned_cols=342 Identities=19% Similarity=0.235 Sum_probs=264.3
Q ss_pred eeccCCCcHHHH--HHHHHHHHcCCC-----CCCCChhHHHHHHHHHhhC-C-CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 4 LIILFPSYLQVL--AALGETMKKGTS-----FGAPCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 4 ~~~~g~~~~~v~--~a~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~-~-~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+++||++|+|. +++.+++.+... .....+...++.+.|++.. + +.+.++|++||++|++.|+++++.+++
T Consensus 49 ~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~ 128 (431)
T TIGR03251 49 SMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKS 128 (431)
T ss_pred hcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhh
Confidence 578999999999 999999887421 1345677788888888886 3 578999999999999999999987741
Q ss_pred ------------CceEEEEcCCCCCCchhhhhhcCCCccccC-CCCCCCCCCCCCCc------------ccccCCCCHHH
Q 017633 75 ------------RERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYE------------TLTAPFNDVSA 129 (368)
Q Consensus 75 ------------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~d~~~ 129 (368)
+.+||.+.++|||.+..++..++....... .+.... .+...+. ......+++++
T Consensus 129 ~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 207 (431)
T TIGR03251 129 RHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDW-PRIDNPKLTFPLDAPNLDQVIALEEEALRQ 207 (431)
T ss_pred cchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCC-ccCCCCcccCCccccccchhhHHHHHHHHH
Confidence 367999999999999998888765322111 111100 0000000 01111124667
Q ss_pred HHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhh
Q 017633 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 208 (368)
Q Consensus 130 le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK 208 (368)
+++.+.+++++++++++||+++++|.+.++++|+++|.++|++||++||+||+++|| ++|..++++++++.||++++||
T Consensus 208 ~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK 287 (431)
T TIGR03251 208 ARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287 (431)
T ss_pred HHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecc
Confidence 777887777899999999999999999999999999999999999999999999999 8888888899999999999999
Q ss_pred hccCCccceeeeehHHHHHHhc--CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 209 IIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 209 ~~~~G~~iG~v~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
++. +|.++..+++.+... ......+++|+++|+++++++.++++.+.++++.+++.++.+++++.|+++..+.+
T Consensus 288 ~~~----~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 363 (431)
T TIGR03251 288 KTQ----VCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFP 363 (431)
T ss_pred cCc----cceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 973 344444443322111 00123467899999999999999999998888899999999999999999877666
Q ss_pred -CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHH
Q 017633 287 -HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~ 363 (368)
.+..+++.|.++.+++. +......+.+.|+++||++.+.+...+ ++++.++++|+++++++|++
T Consensus 364 ~~i~~vrg~G~~~~i~~~-------------~~~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 364 HLVSNPRGRGLMCAFDLP-------------STADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred cceecccccceeEEEEeC-------------CHHHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 66677788888888873 223356789999999999988764444 47899999999999999976
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=306.10 Aligned_cols=290 Identities=36% Similarity=0.517 Sum_probs=245.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHH------Hhc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR------AFT 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~------~~~ 73 (368)
.++|||++|++.+++.+++.+... ..++++...+|.+.|.+..| +.+++++++||++|++.|+++++ ..+
T Consensus 27 ~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~ 106 (339)
T PF00202_consen 27 SVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYT 106 (339)
T ss_dssp TTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhccccccccc
Confidence 478999999999999999988644 34677889999999999997 68999999999999999999999 667
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHH----------HHHHHH-cCCCCeE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA----------LENLFE-NNKGEIA 142 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----------le~~~~-~~~~~~~ 142 (368)
++.+|+.+.++|||.+..++..++.+.....+.. ....+..+|+.++.. +++.+. .+.++++
T Consensus 107 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia 179 (339)
T PF00202_consen 107 GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGP-------LYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIA 179 (339)
T ss_dssp TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCS-------SSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred CCceEEEeeeeeeccCcccccccCCccccccccc-------cccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEE
Confidence 8999999999999999988888666443322211 112235566666544 444443 2346899
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeee
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~ 221 (368)
++++||+.+++|...++++|+++|+++|++||+++|+||+++|| |+|..+.++++++.||++++||++++|+++|.+++
T Consensus 180 avivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG~p~sav~~ 259 (339)
T PF00202_consen 180 AVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGGLPISAVLG 259 (339)
T ss_dssp EEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTTSSEEEEEE
T ss_pred EEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999998899999999
Q ss_pred hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 222 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
++++.+.+.. ..+++|++.+++++++++++++.++++++.+++.++.++++++|+++..+++.+..+++.|.+++++
T Consensus 260 ~~~i~~~~~~---~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~~ie 336 (339)
T PF00202_consen 260 SEEIMEAFQP---GSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYPLIGEVRGIGLMIGIE 336 (339)
T ss_dssp EHHHHTTSCT---TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEE
T ss_pred cchhhccccc---cccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeCeEEEEE
Confidence 9999988863 3388999999999999999999999999999999999999999998887778889999999999998
Q ss_pred ee
Q 017633 302 FT 303 (368)
Q Consensus 302 ~~ 303 (368)
+.
T Consensus 337 ~~ 338 (339)
T PF00202_consen 337 LV 338 (339)
T ss_dssp ES
T ss_pred EE
Confidence 74
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=306.28 Aligned_cols=339 Identities=22% Similarity=0.278 Sum_probs=272.3
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------cC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TG 74 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~~ 74 (368)
.++||++|+|++++.+++++.... .+..+...+++++++++++ .+.+++++||++|++.|+++++.+ ++
T Consensus 49 ~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~ 127 (401)
T TIGR01885 49 VNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFG-YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPEN 127 (401)
T ss_pred ccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcC-CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 469999999999999998874322 2356788999999999985 479999999999999999998765 24
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
++.|+.+..+|||.+...+..++.......+ .. ....+..++++|++++++.+++++++++++++||+++++|
T Consensus 128 ~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G 200 (401)
T TIGR01885 128 QAIIVSAKGNFHGRTLGAISMSTDPDSRTNF---GP----YVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAG 200 (401)
T ss_pred CCEEEEECCCcCcccHHHHhCcCCccccccc---CC----CCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCC
Confidence 6788899999999988888776543211111 10 1123566788899999999976556789999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~ 232 (368)
.+.++++|+++|+++|++||+++|+||+|+++ +.|..+..+..++.||++++||++++| +|+|++++++++++.+..
T Consensus 201 ~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~- 279 (401)
T TIGR01885 201 VVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKP- 279 (401)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccC-
Confidence 99999999999999999999999999999999 777766666678889999999999965 899999999999888763
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
..+.+|++.++++++++.++++.+.++++.++..++.+++++.|+++. .+....+.+.|.++.+.+....
T Consensus 280 --~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l~--~~~~~~~~g~g~~~~i~~~~~~------ 349 (401)
T TIGR01885 280 --GEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP--KPIITEVRGRGLLNAIVIDESK------ 349 (401)
T ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcc--CCceeEEeecCeeEEEEeccCc------
Confidence 235578889999999999999999777788888888888888888763 2333456678888887764211
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
......++++.|.++||.+.+.+...+| +++.++++++++++++|+++++
T Consensus 350 ----~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 350 ----TGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred ----chhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 0124578999999999999987655554 4678999999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=304.00 Aligned_cols=356 Identities=26% Similarity=0.352 Sum_probs=277.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC---CCChhHHHHHHHHHhhCC-CC-CeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||++|++.+++.+++++..+.. ..++...++++.+++..+ +. ++++|++||++|++.|+++++.++++..|
T Consensus 52 ~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~i 131 (425)
T PRK08088 52 VLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGV 131 (425)
T ss_pred hcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeE
Confidence 46799999999999999998753221 235677899999999886 33 69999999999999999999999888899
Q ss_pred EEEcCCCCCCchhhhhhcCCCc-cccCCCC-CCCCCCCCCC-cccccCCC-CHHHHHHHHH--cCCCCeEEEEEcccCCC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV-ATLGLPD-SPGVPKGATY-ETLTAPFN-DVSALENLFE--NNKGEIAAIILEPVVGN 152 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~-d~~~le~~~~--~~~~~~~~~~~~~~~~~ 152 (368)
|.+.++|||.+..+...++... ....+.. ..++.....+ +......+ +++++++.+. +++++.+++++||+.++
T Consensus 132 v~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~ 211 (425)
T PRK08088 132 IAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGE 211 (425)
T ss_pred EEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCC
Confidence 9999999999988887765321 1111100 0111000000 00000000 1567888886 33468999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
+|.+.++++++++|.++|++||+++|+||+|+++ +.|..+.++..++.||+.+|||++++|+|+||+++++++++.+..
T Consensus 212 ~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~ 291 (425)
T PRK08088 212 GGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAP 291 (425)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCC
Confidence 9999999999999999999999999999999999 777766677788899999999999999999999999999988873
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+.+|++++++.++++.+.++.+..+++.+++++..+++++.+.++....+....+.+.|.++|+.+.....
T Consensus 292 ---~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~---- 364 (425)
T PRK08088 292 ---GGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD---- 364 (425)
T ss_pred ---CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCC----
Confidence 3467889999999999999999887788999999999999999999877777656677779999999853210
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCC--Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.|+.....++...++++||.+.+.+. +.++ +++.++++++++++++|++++.+
T Consensus 365 -~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 365 -HSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred -CCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 0112344568899999999998876542 3334 45678999999999999999865
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=306.10 Aligned_cols=335 Identities=24% Similarity=0.288 Sum_probs=267.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~ 73 (368)
.+++||++|++.+++.+++++.... ....+...++.++++++.+. +++++++||++|++.|+++++.+ +
T Consensus 52 ~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~ 130 (401)
T PRK00854 52 AVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGS-HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPE 130 (401)
T ss_pred hccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCC
Confidence 3579999999999999999885332 24567888999999998864 68999999999999999999765 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++||++..+|||.+...+..++.+.....+ ......+..++++|++++++.+. +++++++++|+++++
T Consensus 131 ~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~le~~i~---~~~~aii~e~~~~~~ 200 (401)
T PRK00854 131 GQAEIIVCADNFHGRTLSIVGFSTDPDARGGF-------GPFTPGFRVVPFGDAEALEAAIT---PNTVAFLVEPIQGEA 200 (401)
T ss_pred CCceEEEECCCcCCccHHHHhccCCccccccC-------CCCCCCeEEeCCCCHHHHHHHhC---CCeEEEEEccccCCC
Confidence 45789999999999987777665443211111 11123456678889999999996 478999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++|+++|+++|++||+++|+||+|+|+ +.|..+..+..++.||++++||++++| +|+|++++++++++.+..
T Consensus 201 G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~ 280 (401)
T PRK00854 201 GVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKP 280 (401)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccC
Confidence 999999999999999999999999999999988 766655556678889999999999977 799999999999887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..++.+++.++++++++.++++.+.++++.++++++.+++++.|+++.. .......+.+.++.+.+..
T Consensus 281 ---~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~g~g~~~~i~~~~------- 348 (401)
T PRK00854 281 ---GQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRS--NIVREVRGRGLMLAVELEP------- 348 (401)
T ss_pred ---CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhcc--CceEEEeccceEEEEEEec-------
Confidence 3356788889999999999999887677889999999999999987632 2223445667777776532
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+.....++++.|+++||.+.+.+...+| +++.++++++++++++|++++.
T Consensus 349 -----~~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 349 -----EAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred -----CchhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 1223578999999999999876545555 4578899999999999998874
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=303.51 Aligned_cols=340 Identities=30% Similarity=0.505 Sum_probs=262.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE-c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-E 82 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~-~ 82 (368)
++++||++|+|.+++.+++++...+..++....++++.|.+.+++.+.++|++||++|++.|+++++.++++..|+.+ .
T Consensus 59 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~ 138 (431)
T PRK06209 59 AVGLGHAYPPVVEAVREALQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCAD 138 (431)
T ss_pred chhcCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 467999999999999999998766666666677899999999876689999999999999999999999888888888 6
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
.+||+...... +. .+...+...........++++|++++++++.+++++++++++||+.++ .++.+|
T Consensus 139 ~~~h~~~~~~~---g~------~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~ 205 (431)
T PRK06209 139 HPFFSTDDWFI---GT------TPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGF 205 (431)
T ss_pred Ccccccccccc---cc------CCCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHH
Confidence 77776321110 00 000011110111224556788999999999876668999999998765 778899
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHH--hcC---CCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM--VAP---AGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~--~~~---~~~~~ 236 (368)
+++|.++|++||+++|+||+|+|| +. ..+...++++.||++++||++++|+++|++++++++++. +.. .+.+.
T Consensus 206 l~~l~~lc~~~g~lLI~DEv~tG~~~~-~~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~ 284 (431)
T PRK06209 206 LHEVRRLCHENGALFILDEMITGFRWH-MRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFL 284 (431)
T ss_pred HHHHHHHHHHcCCEEEEEcccccCCcC-cchhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCcee
Confidence 999999999999999999999998 42 223333579999999999999999999999999998886 321 12345
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
+++|+++|++++++++++++.++++++.+++.++.+++++.|+++..+++....+.+.|.+..+.+...... ..+
T Consensus 285 ~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~-----~~~ 359 (431)
T PRK06209 285 LSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGN-----GQP 359 (431)
T ss_pred eccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcc-----cCC
Confidence 788999999999999999999988889999999999999999998777777666666666656555321100 001
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.......+.+.|+++|+.+. .++++..++++|++++++++++++.+
T Consensus 360 ~~~~~~~~~~~l~~~Gi~~p-----~l~is~~ht~~dId~~l~~l~~~l~~ 405 (431)
T PRK06209 360 SQAFRTLFLQETIRRGVLMP-----SLVVSYAHGDADIERTIDAVHGALGV 405 (431)
T ss_pred cHHHHHHHHHHHHHCCcccc-----cccccccCCHHHHHHHHHHHHHHHHH
Confidence 12223478888999999873 34566788999999999999998864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=304.30 Aligned_cols=341 Identities=24% Similarity=0.304 Sum_probs=270.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~ 73 (368)
..++||++|+|++++.+++++..... +.++...++++.+++.. +.+.+++++||++|++.++++++.+ .
T Consensus 42 ~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~ 120 (400)
T PTZ00125 42 AVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF-GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPE 120 (400)
T ss_pred hccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC-CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCC
Confidence 45799999999999999988743221 23566777777777765 4579999999999999999988643 1
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++|++++++|||.....+...+.......+ ... ...+..++++|++++++.++ .+++++++++|+++++
T Consensus 121 ~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~d~~~le~~l~--~~~~~~v~~ep~~~~~ 191 (400)
T PTZ00125 121 NQAKIIFCNGNFSGRTIGACSASTDPKCYNNF---GPF----VPGFELVDYNDVEALEKLLQ--DPNVAAFIVEPIQGEA 191 (400)
T ss_pred CCCeEEEECCCcCCccHHHHhhcCCcchhccC---CCC----CCCceEeCCCCHHHHHHHhC--CCCeEEEEEcCccCCC
Confidence 35789999999999998888776542211111 110 11244566679999999996 2479999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++|+++|+++|++||+++|+||+|+++ +.|..+..+.+++.||++++||++++| +|+||+++++++++.+..
T Consensus 192 G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~ 271 (400)
T PTZ00125 192 GVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKP 271 (400)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccC
Confidence 999999999999999999999999999999988 777666666788899999999999977 599999999999888763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+..+++.+++.++++.++++.+.++++.++..++.++++++|+++....+....+.+.|.++++.+...
T Consensus 272 ---~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~------ 342 (400)
T PTZ00125 272 ---GEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHS------ 342 (400)
T ss_pred ---CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccC------
Confidence 23557788999999999999998877788889999999999999887555555445667788888876321
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.....++++.|+++||.+.+++...+|+ ++.++++++++++++|++++.++
T Consensus 343 -----~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 343 -----DGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred -----cchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 12346789999999999999876666665 47799999999999999988653
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=318.06 Aligned_cols=357 Identities=19% Similarity=0.227 Sum_probs=273.1
Q ss_pred eeccC-CCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHH-hc---
Q 017633 4 LIILF-PSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARA-FT--- 73 (368)
Q Consensus 4 ~~~~g-~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~-~~--- 73 (368)
++++| |++|++.+++.+++.+..+. ++.+++..+|+++|.+..+ + .++|+|++||++|++.|+++++. +.
T Consensus 376 ~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~ 455 (817)
T PLN02974 376 TQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDH 455 (817)
T ss_pred HhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhc
Confidence 45788 58999999999999986543 3568899999999999655 3 58999999999999999999953 41
Q ss_pred ---------------CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CC-CC-CCCCCCCCc--------ccccCCC--
Q 017633 74 ---------------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PD-SP-GVPKGATYE--------TLTAPFN-- 125 (368)
Q Consensus 74 ---------------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~--------~~~~~~~-- 125 (368)
++.+||.+.++|||.+..++..++.......+ .. .. ...+...+. .+.+|..
T Consensus 456 G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~ 535 (817)
T PLN02974 456 GFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFS 535 (817)
T ss_pred CCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccc
Confidence 35679999999999999999988753222111 00 00 000000000 0000100
Q ss_pred -----------------------------CHHHHHHHHHc-----CCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHH
Q 017633 126 -----------------------------DVSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT 170 (368)
Q Consensus 126 -----------------------------d~~~le~~~~~-----~~~~~~~~~~~~~-~~~~g~~~~~~~~l~~i~~l~ 170 (368)
..+.+++.+.+ ++++++++++||+ .+.+|++.++++|+++++++|
T Consensus 536 ~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc 615 (817)
T PLN02974 536 SGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVC 615 (817)
T ss_pred ccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHH
Confidence 02567777753 3468999999996 788999999999999999999
Q ss_pred HHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC---CCccccccCCCCH
Q 017633 171 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNP 245 (368)
Q Consensus 171 ~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~---~~~~~~~t~~~~~ 245 (368)
++||++||.||+++|| |+|..++++++++.||+++++|+++|| +|+|.+++++++.+.+... ..+.+++||++|+
T Consensus 616 ~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnp 695 (817)
T PLN02974 616 RSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHP 695 (817)
T ss_pred HHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCH
Confidence 9999999999999999 999999999999999999999999999 6999999999999988531 2456899999999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHH----HHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKIT----GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
+++++++++++.++++++.+++.++. +++.+.|.+.+.+++.+..+++.|.++++++....... ......+
T Consensus 696 l~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~-----~~~~~~a 770 (817)
T PLN02974 696 MGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGS-----GYSSLYA 770 (817)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCccc-----ccchHHH
Confidence 99999999999998876555555555 44455554444557777899999999999997532110 0011235
Q ss_pred HHHHHHHH-HcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHH
Q 017633 322 ARFYRGML-EEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 322 ~~~~~~l~-~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
..+.+.++ ++|+++++.++.. +.+++.++++++++++++|.+.|
T Consensus 771 ~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 771 RSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHhCCEEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 67888899 9999999876432 24688999999999999999876
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=292.91 Aligned_cols=331 Identities=27% Similarity=0.330 Sum_probs=260.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..++|| +|++++++.+++.....+ ++....++++.+++.+. . ...+++++||++|++.|+++++.+.++++|+++
T Consensus 40 ~~~lG~-~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~ 116 (375)
T PRK04260 40 VTNLGF-HPQVQQALQKQAGLIWHS--PNLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITF 116 (375)
T ss_pred cccCCC-CHHHHHHHHHHHHhcCcc--cCccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEE
Confidence 467999 899999999999864322 11222344444444332 2 235789999999999999999888788899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+.+|||+....+..++.......+.. .+ ..+...+++|++++++.+. +++++++++|+++++|.+.++.+
T Consensus 117 ~~~yHg~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~dl~~l~~~l~---~~~a~vi~e~v~~~~G~~~~~~~ 186 (375)
T PRK04260 117 QNSFHGRTFGSMSATGQDKIKDGFGD--GV-----PHFSYAIFNDLNSVKALVN---KNTAAVMLELVQGESGVLPADKD 186 (375)
T ss_pred CCCcCcccHHHHhccCCcccCCCCCC--CC-----CCeEEeCCCCHHHHHHhcC---CCeEEEEECCeECCCCCcCCCHH
Confidence 99999998877766654322111110 00 1122234568999998885 46899999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcccccc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t 240 (368)
|++++.++|+++|+++|+||+|+++ +.|..+....+++.||++||||++++|+|+|++++++++.+.+.. ..+.+|
T Consensus 187 ~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~---~~~~~t 263 (375)
T PRK04260 187 FVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANGVPVGAMLAKSSLGGAFGY---GSHGST 263 (375)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCCcceEEEEEcHHHHhhcCC---CCCCCC
Confidence 9999999999999999999999998 766655666778899999999999999999999999998888763 346688
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
+++++++++++.++++.+..+++.++++++.+++++.+.+.+.+.+....+.+.+.++|+++.. .
T Consensus 264 ~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~ 328 (375)
T PRK04260 264 FGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTA---------------D 328 (375)
T ss_pred CCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecC---------------c
Confidence 9999999999999999887778899999999999999999877766555666788898988621 1
Q ss_pred HHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHH
Q 017633 321 FARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
..++.+.|+++||.+.+.+...++ +++.++++|+++++++|++++
T Consensus 329 ~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 329 LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 367899999999999887655444 468889999999999998763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=287.77 Aligned_cols=332 Identities=29% Similarity=0.396 Sum_probs=261.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC-----Cc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-----RE 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~-----~~ 76 (368)
.+++||.+|.+.+++.+++.+... ..++.+...+|+++++++++ .+++++++||++|+..++++++.+.+ ++
T Consensus 38 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00707 38 VNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG-ADRVFFCNSGAEANEAALKLARKYTGDKGKEKK 116 (379)
T ss_pred hccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC-CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCC
Confidence 579999999999999999887421 23467889999999999995 45999999999999999988765443 68
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++++++||++...+...++....... .. ....+...++++|++++++.++ +++++++++|+++++|..
T Consensus 117 ~vi~~~~~yh~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~ 186 (379)
T TIGR00707 117 KIIAFENSFHGRTMGALSATGQPKYQKG-----FE--PLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVN 186 (379)
T ss_pred eEEEECCCcCCccHHHHHhcCChhhhcc-----CC--CCCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCc
Confidence 9999999999998777766554321100 00 1112334456668999999987 368899999998888877
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
.++.+++++|.++|++||+++|+||+|++| +.|........+..||+++|||++++|+|+||+++++++++.+.. .
T Consensus 187 ~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G~riG~~~~~~~~~~~~~~---~ 263 (379)
T TIGR00707 187 PASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTP---G 263 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCCcccEEEEEcHHHHhhhcC---C
Confidence 678888999999999999999999999988 655544445567788999999999999999999999999888874 2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
....+++.++++++++.++++.+..+++.+++++++++++++|++.+...+. ....+.+.++++.+..
T Consensus 264 ~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~g~~~~~~~~~----------- 331 (379)
T TIGR00707 264 DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPN-KEVRGKGLMLGIELEA----------- 331 (379)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCCC-CccccCceEEEEEecC-----------
Confidence 2446678899999999999998866678899999999999999987655443 2333456777876521
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
+..++++.|.++||.+.+.+...+|+ ++..+++++++++++|++++
T Consensus 332 ----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 332 ----PCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred ----cHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 14788999999999999976555665 45789999999999998764
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=253.67 Aligned_cols=354 Identities=20% Similarity=0.266 Sum_probs=282.2
Q ss_pred cCCCcHHHHHHHHHHHHcC-CCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 7 LFPSYLQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
-||.+|+|+++...++... .+..+...-..+.++.|...+++.+-++|++||++|+.+|+++++.++++.++|..+..|
T Consensus 59 vghchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAY 138 (452)
T KOG1403|consen 59 VGHCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAY 138 (452)
T ss_pred cccCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechh
Confidence 4789999999999988874 344455566678888888888889999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCC-------C-----HHHHHHHHHc---CCCCeEEEEEccc
Q 017633 86 HGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFN-------D-----VSALENLFEN---NKGEIAAIILEPV 149 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------d-----~~~le~~~~~---~~~~~~~~~~~~~ 149 (368)
||+....+..+..++........ +.+.-...++++...+. | .+.+++.+.. ....+++++.|..
T Consensus 139 HGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEsl 218 (452)
T KOG1403|consen 139 HGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESL 218 (452)
T ss_pred ccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99988777766443322111111 11111122223322221 1 3455665542 2245789999999
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
.+-+|.+.||++|++++++..+.+|.+.|.||++.|| |.|.. ++++.++..||+++++|.+|.|.|++.++..+++.+
T Consensus 219 QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~ 298 (452)
T KOG1403|consen 219 QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQ 298 (452)
T ss_pred HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHH
Confidence 9999999999999999999999999999999999999 88874 888999999999999999999999999999999999
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+...+.. .++||++||++++++++.++.++++++.++..+..+++.+.|+++..++...-.+++.|.|+++++.+..
T Consensus 299 Af~atgv~-YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~- 376 (452)
T KOG1403|consen 299 AFHATGVE-YFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDR- 376 (452)
T ss_pred Hhccccce-ehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeeccc-
Confidence 99865433 4589999999999999999999999999999999999999999998888888899999999999997532
Q ss_pred cccchhcccccHHHHHHHHHHHHc-CeeecCCCCCc----cccccCCCHHHHHHHHHHHHHHHh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEA----GFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~~----~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ..|+...+..+..+|++. ||.++..|... +-++.+.++++.++++..|+++|.
T Consensus 377 ---~t-RtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 377 ---KT-RTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred ---cc-CCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 11 113444566677788775 79998876443 236888899999999999998874
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=258.32 Aligned_cols=326 Identities=18% Similarity=0.176 Sum_probs=230.6
Q ss_pred eeccCCC------cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-------CCC-eEEEeCChHHHHHHHHHHH
Q 017633 4 LIILFPS------YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-------SIE-MVRFVNSGTEACMGVLRLA 69 (368)
Q Consensus 4 ~~~~g~~------~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~-~v~~~~~gt~a~~~al~~~ 69 (368)
++.|+.+ ++++++++.+++.+...++++.....+|++++++++. .++ +|++|+|+++|+..++...
T Consensus 30 vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~ 109 (393)
T COG0436 30 VIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLAL 109 (393)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHh
Confidence 4556554 4579999999888753144477778888888887663 234 4999999999999999766
Q ss_pred HHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 70 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
..++|.||+++|.|..+.......++..+.........++.. |+++++++++ +++++++++..
T Consensus 110 --~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~------------d~~~l~~~i~---~ktk~i~ln~P 172 (393)
T COG0436 110 --LNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKP------------DLEDLEAAIT---PKTKAIILNSP 172 (393)
T ss_pred --cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcC------------CHHHHHhhcC---ccceEEEEeCC
Confidence 357889999999998875555555555443322111122221 8999999999 47888888777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccc-cccC---CCcchhhhhhhcc-CCccceeeeeh
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQ-EYFG---VTPDLTTLGKIIG-GGLPVGAYGGR 222 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~-~~~~---~~~di~s~sK~~~-~G~~iG~v~~~ 222 (368)
+|++|.+.++++ +++|+++|++||+++|+||+|.++ +.+. ..+. +..+ ....+.||||.++ +|||+||++++
T Consensus 173 ~NPTGav~~~~~-l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~ 251 (393)
T COG0436 173 NNPTGAVYSKEE-LKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGP 251 (393)
T ss_pred CCCcCcCCCHHH-HHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecC
Confidence 777777666555 999999999999999999999999 6663 2222 2222 2344669999999 99999999988
Q ss_pred -HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH----HHHHHHHHHHHHHHHHHHhcC-CceEE-eecc
Q 017633 223 -RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE----YLNKITGELTQGIIDAGKKAG-HAICG-GYIS 295 (368)
Q Consensus 223 -~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~-~~~~~-~~~~ 295 (368)
+++++.+. ......+++++.++|.++.++++.-.+.++.+ .++++++.+.+.|.+ .+ +.... +..+
T Consensus 252 ~~~l~~~~~---~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~----~~g~~~~~~p~Ga 324 (393)
T COG0436 252 PEELIAALR---KLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE----IGGLSVVKPPEGA 324 (393)
T ss_pred hHHHHHHHH---HHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh----cCCeeeccCCCee
Confidence 77877776 23455666889999999999997332112333 345555555555544 33 33333 3345
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC---C----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ---F----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~---~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++|.++. ...++.+|+..|+++ ||.+.||. . .++|+++..++++++++++++++.+.+
T Consensus 325 ~Y~~~~i~-------------~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 325 FYLFPKIP-------------ELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAE 391 (393)
T ss_pred EEEEeecC-------------CCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 56666553 224568999998876 89999972 2 357889999999999999999998864
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=225.00 Aligned_cols=344 Identities=19% Similarity=0.180 Sum_probs=273.5
Q ss_pred ceeccCCCcHHHHHHHHH-HHHc----CC--CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-
Q 017633 3 QLIILFPSYLQVLAALGE-TMKK----GT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT- 73 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~-~~~~----~~--~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~- 73 (368)
+.+++|+++|.++.+..+ +... -. ....+.++.+.+.+.+....+ +.++|..-.+|+.|++.|++++..+.
T Consensus 86 sSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~ 165 (484)
T KOG1405|consen 86 SSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYR 165 (484)
T ss_pred cccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHH
Confidence 568999999999988753 2222 11 223456778888888888888 78899999999999999998876441
Q ss_pred -------------------------CCceEEEEcCCCCCCchhhhhhcCC-CccccCCCCCCCCCCCCCCcccccC----
Q 017633 74 -------------------------GRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAP---- 123 (368)
Q Consensus 74 -------------------------~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 123 (368)
+.-.|+.|.++|||.+...+..+.. +++....|.+++.......-.+.++
T Consensus 166 ~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~ykYPLdenv~ 245 (484)
T KOG1405|consen 166 AKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLDENVA 245 (484)
T ss_pred hhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCccccCChhhhhh
Confidence 1234899999999999988888755 4566666766665432222222222
Q ss_pred CC------CHHHHHHHHHcCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcc
Q 017633 124 FN------DVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 193 (368)
Q Consensus 124 ~~------d~~~le~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~ 193 (368)
.| .++++|++|.++. ..++++++||+++.+|.-..+++|++.+.++|+|||+.+|+||+|+|. .+|.+++
T Consensus 246 ~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~Wa 325 (484)
T KOG1405|consen 246 ENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWA 325 (484)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceee
Confidence 12 4889999998753 468999999999999999999999999999999999999999999998 7889999
Q ss_pred ccccCCC--cchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Q 017633 194 QEYFGVT--PDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 270 (368)
Q Consensus 194 ~~~~~~~--~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 270 (368)
.++|++. ||++||||-|- || | .-.+ .++...++.+.+||.+.|.-...+.+.++.+.++++.+.....
T Consensus 326 Hehw~l~~PpD~vTFSKK~q~gG----f-fh~~----~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~v 396 (484)
T KOG1405|consen 326 HEHWNLDSPPDVVTFSKKFQTGG----F-FHDE----EFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHV 396 (484)
T ss_pred ehhcCCCCCccceehhhhhhcCc----c-ccCc----ccCCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999985 79999999887 44 2 2232 3344445678899999999999988999999889999999999
Q ss_pred HHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--cccc
Q 017633 271 TGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSL 347 (368)
Q Consensus 271 ~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~ 347 (368)
.+.+..+|.++..+++ .....++.|.+..+++ |.+.....+...++-+|+.++.++...+ |+++
T Consensus 397 G~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~-------------ps~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsL 463 (484)
T KOG1405|consen 397 GKALLKGLLELQAKYPGKINNLRGRGTFIAWDC-------------PSGSIRDKLILIARLNGVNLGGCGDKSIRFRPSL 463 (484)
T ss_pred HHHHHHHHHHHHHhCchhhhcccccceEEEEeC-------------CChHHHHHHHHHHHHcCceecccccceeeeccce
Confidence 9999999999988876 4557888999999988 3455567889999999999999987665 4678
Q ss_pred CCCHHHHHHHHHHHHHHHhhC
Q 017633 348 AHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 348 ~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.-.+-+.+-++++++++++.+
T Consensus 464 vf~~~Ha~i~l~~~~k~l~~l 484 (484)
T KOG1405|consen 464 VFRKHHADIFLDIFDKILAGL 484 (484)
T ss_pred eehhhhHHHHHHHHHHHhccC
Confidence 889999999999999998753
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=240.85 Aligned_cols=322 Identities=19% Similarity=0.214 Sum_probs=230.3
Q ss_pred eeccCC-CcHHHHHHHHHHHHcC-C------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFP-SYLQVLAALGETMKKG-T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~-~~~~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
.+++|. ++|++++++.+++++. . .++.+.+.+.+|+++++++++..+.+++++|++ ++..+++.. .++
T Consensus 117 ~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~a~---~~~ 192 (481)
T PLN02822 117 ANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIPAF---CKK 192 (481)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHHHh---CCC
Confidence 345565 7999999999999882 2 134567889999999999999778899986555 777777644 344
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC------CC-eEEEEEcc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK------GE-IAAIILEP 148 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~------~~-~~~~~~~~ 148 (368)
.++|++++.+|......+.+.+. +++.++++|.++++..+.+.. ++ ++++++++
T Consensus 193 gd~Ii~d~~~H~s~~~~~~ls~~-------------------~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~ 253 (481)
T PLN02822 193 GDIIVADEGVHWGIQNGLYLSRS-------------------TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEA 253 (481)
T ss_pred CCEEEEeCCccHHHHHHHHHcCC-------------------eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEec
Confidence 45666788899776555544432 345566778888887776411 23 38999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc-h--hcccCccccccCC---Ccchh--hhhhhcc-CCccceee
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F--RLAYGGAQEYFGV---TPDLT--TLGKIIG-GGLPVGAY 219 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~--~~g~~~~~~~~~~---~~di~--s~sK~~~-~G~~iG~v 219 (368)
+++++|.+.+ +++|+++|++||++||+||+|+. . +.|. +..+++++ .+|++ +|||+++ .| ||+
T Consensus 254 i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~-G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i 325 (481)
T PLN02822 254 IYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR-GLSEHFGVPIEKIDIITAAMGHALATEG---GFC 325 (481)
T ss_pred CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ChHHHcCCCCCCCeEEEecchhhhhhCC---eEE
Confidence 9999999999 99999999999999999999962 2 2233 34566776 56765 5899998 33 788
Q ss_pred eehHHHHHHhcCCCCccccccCCCC--HHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 220 GGRRDIMEMVAPAGPMYQAGTLSGN--PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
++++++++.++.. .++.+|+.+ +..++++.++++.++. +++.++++++++++++.|++.. ++.......++
T Consensus 326 ~g~~~ii~~~~~~---~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~~sp 399 (481)
T PLN02822 326 TGSARVVDHQRLS---SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIP---GLSIGSNTLSP 399 (481)
T ss_pred EcCHHHHHHHHhc---CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCCC
Confidence 9999999887742 244455544 7788888889987755 4577889999999988888741 33323335567
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC---------Cccc--cccCCCHHHHHHHHHHHHHH
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF---------EAGF--TSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~---------~~~~--~~~~~~~~~i~~~~~~l~~~ 364 (368)
++++.+.... ... ..+.....++++.|+ ++||.+.++.. +.+| ++..++++||++++++|+++
T Consensus 400 i~~l~l~~~~-~~~----~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~ 474 (481)
T PLN02822 400 IVFLHLEKST-GSA----KEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRV 474 (481)
T ss_pred EEEEEeCCCc-ccc----cchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7777774210 000 001123578999998 78999997532 1244 35678999999999999998
Q ss_pred Hhh
Q 017633 365 LRQ 367 (368)
Q Consensus 365 l~~ 367 (368)
+.+
T Consensus 475 ~~~ 477 (481)
T PLN02822 475 AAS 477 (481)
T ss_pred HHH
Confidence 865
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=217.74 Aligned_cols=324 Identities=15% Similarity=0.090 Sum_probs=222.3
Q ss_pred CcHHHHHHHHHHHHcC-CCCCCCC-hhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 10 SYLQVLAALGETMKKG-TSFGAPC-LLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
.+|+|++|+.+.++.+ .+|.+.+ +...++.++..+.++ .++.++++++...++..+++... .++|.|++..|.
T Consensus 39 ~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T--~~gd~Vvi~tPv 116 (388)
T COG1168 39 TPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT--KPGDGVVIQTPV 116 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC--cCCCeeEecCCC
Confidence 6899999999999875 3343333 367788888888776 58899999999999999998773 468899999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCC-eEEEEEcccCCCCCcccCCHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
|+... .+....+.++...++...+ ..+.+ |+++||+.+... + +..++|+|.|+ +|. ..++|+|
T Consensus 117 Y~PF~-~~i~~n~R~~i~~pL~~~~--------~~y~i---D~~~LE~~~~~~--~vkl~iLCnPHNP-~Gr-vwt~eeL 180 (388)
T COG1168 117 YPPFY-NAIKLNGRKVIENPLVEDD--------GRYEI---DFDALEKAFVDE--RVKLFILCNPHNP-TGR-VWTKEEL 180 (388)
T ss_pred chHHH-HHHhhcCcEEEeccccccC--------CcEEe---cHHHHHHHHhcC--CccEEEEeCCCCC-CCc-cccHHHH
Confidence 98752 3333344443322221111 01111 899999999853 4 44566666543 444 4555669
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcc-cCccccccC-----CCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFG-----VTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGP 234 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g-~~~~~~~~~-----~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~ 234 (368)
++|+++|.+||++||+||+|+++ ..| .++.+...+ ...-+.+-||+|+ +|+.+++++. ++++..++.. .
T Consensus 181 ~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~--~ 258 (388)
T COG1168 181 RKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLK--R 258 (388)
T ss_pred HHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHH--H
Confidence 99999999999999999999999 666 333332221 1112345689999 8999999855 6666444332 1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
....+...+|.+++.|..++++..+. +++.+.++.+++++.+.+++.... .....+..+.+.|++++.-...
T Consensus 259 l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~--v~v~~p~gTYL~WLD~r~l~l~---- 332 (388)
T COG1168 259 LKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPG--VKVTEPQGTYLAWLDCRELGLD---- 332 (388)
T ss_pred HHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCC--cEEecCCCceeeeeeccccCCC----
Confidence 22234446789999999999986543 445666777777777777765322 3334455566889999764322
Q ss_pred hcccccHHHHHHHHHHHHc-CeeecCC------CCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 313 AKKSETTKFARFYRGMLEE-GVYFAPS------QFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~-Gi~~~~~------~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..++.+.|+++ +|.+.+| |...+|+.+.++++.+++++++|++++..
T Consensus 333 --------d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 333 --------DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK 386 (388)
T ss_pred --------hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence 25677777765 5555554 55677899999999999999999998864
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=232.60 Aligned_cols=319 Identities=14% Similarity=0.098 Sum_probs=211.7
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
++.+ +++.+++......+.+.....+|++.+++++. ++++|++|+|+++|+..++..+ ..++|.|++..++|...
T Consensus 41 ~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~ 117 (373)
T PRK07324 41 GKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYAL--VEPGDHVISVYPTYQQL 117 (373)
T ss_pred Ccch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCchhH
Confidence 3456 77777776643333345667899999999875 5789999999999999998766 35678899988888665
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
.. .....|..+...+.....++. .|++++++.++ +++++++++..+|++|.+.++++ +++|++
T Consensus 118 ~~-~~~~~g~~v~~v~~~~~~~~~------------~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~~~~~-l~~i~~ 180 (373)
T PRK07324 118 YD-IPESLGAEVDYWQLKEENGWL------------PDLDELRRLVR---PNTKLICINNANNPTGALMDRAY-LEEIVE 180 (373)
T ss_pred HH-HHHHcCCEEEEEecccccCCC------------CCHHHHHHhCC---CCCcEEEEeCCCCCCCCCCCHHH-HHHHHH
Confidence 33 333334333222221111111 17899988776 46677777666666776665444 999999
Q ss_pred HHHHhCCEEEEehhhhch-hcccCc-cccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 169 ITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~-~~g~~~-~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|++||+++|+||+|.++ ..+... ..+..+....+.||||.++ +|+|+||+++++++++.+.. .....+++.+.
T Consensus 181 ~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~---~~~~~~~~~~~ 257 (373)
T PRK07324 181 IARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRK---YRDYTMICAGV 257 (373)
T ss_pred HHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHH---HhCcEEecCCh
Confidence 999999999999999887 433221 1122223344679999999 89999999999988888774 22334566788
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
+++.++..+++.. +.+.++.++..+..++.+.+.+...+ .....+..+.+.++.+.. ..+..++
T Consensus 258 ~~q~~a~~~l~~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~-------------~~~~~~~ 322 (373)
T PRK07324 258 FDDMLASLALEHR--DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDV-------------DMPSEDF 322 (373)
T ss_pred HHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCC-------------CCCHHHH
Confidence 8888877766521 23334444444444444444444443 222223333444555531 1235788
Q ss_pred HHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 325 YRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 325 ~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.|+ ++||.+.|+.. .++|+++..+++.+.+++++|++++.+
T Consensus 323 ~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 323 CLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred HHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 88876 67999999853 356778888899999999999999865
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=231.57 Aligned_cols=321 Identities=17% Similarity=0.109 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+++++.+.+......|.+.....+|++.+++++ + +++ ++++|+|+++|+..++... ..++|.|++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l--~~~gd~Vlv~~ 146 (413)
T PLN00175 69 PDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGL--INPGDEVILFA 146 (413)
T ss_pred CHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHh--CCCCCEEEEeC
Confidence 556888888887753223334445566777776654 2 344 6999999999999988755 35788999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
+.|..+... +...|.++....+.....-. |++++++.+. ++++++++++.+|++|.+++ .+.
T Consensus 147 P~y~~~~~~-~~~~g~~~~~v~~~~~~~~~-------------~~~~l~~~~~---~~~k~i~i~~p~NPtG~~~s-~~~ 208 (413)
T PLN00175 147 PFYDSYEAT-LSMAGAKIKTVTLRPPDFAV-------------PEDELKAAFT---SKTRAILINTPHNPTGKMFT-REE 208 (413)
T ss_pred CCchhHHHH-HHHcCCEEEEEECCcccCCC-------------CHHHHHHhcC---cCceEEEecCCCCCCCcCCC-HHH
Confidence 888765433 33334433222221111111 7899999886 35677777666666776665 555
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCcccc-cc---CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~-~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
+++|+++|++||+++|+||+|.++ ..+...... .. +....+.||||.++ +|+|+||+++++++++.+.. ..
T Consensus 209 l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~---~~ 285 (413)
T PLN00175 209 LELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ---AH 285 (413)
T ss_pred HHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHH---HH
Confidence 999999999999999999999887 433221111 11 22334569999999 89999999999999888763 22
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
...+++.+.+.+.++.++++.. +.+.++.++..+..++.+.+.+.+.+.....+..+.++|+.+...
T Consensus 286 ~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~----------- 352 (413)
T PLN00175 286 SFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPF----------- 352 (413)
T ss_pred hhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccc-----------
Confidence 3345678888888887777521 223333333333333334444333443333334455677765210
Q ss_pred ccHHHHHHHHHHH-HcCeeecCCC---------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~-~~Gi~~~~~~---------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+ ++||.+.|+. ..++|+++..+++++++++++|++.+++
T Consensus 353 ~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 353 GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLKR 413 (413)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence 1112478888887 5699999863 1245777778999999999999998763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=230.60 Aligned_cols=320 Identities=13% Similarity=0.046 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+++++.+.+......+.+.....++++++++++ + .+ +++++|+|+++|+..+++.+ ..+++.|++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~vl~~~ 112 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAI--INPGDEVLIVE 112 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh--CCCCCEEEEeC
Confidence 335688888777643222333445566666666655 2 23 47999999999999998766 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|+.....+.. .+...........+.. . -|++++++++.. +++++++...+|++|.+++ .+.
T Consensus 113 p~y~~~~~~~~~-~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~---~~~~v~~~~p~NPtG~~~s-~~~ 175 (378)
T PRK07682 113 PSFVSYAPLVTL-AGGVPVPVATTLENEF---------K---VQPAQIEAAITA---KTKAILLCSPNNPTGAVLN-KSE 175 (378)
T ss_pred CCchhhHHHHHH-cCCEEEEeecCCccCC---------C---CCHHHHHhhcCc---ccEEEEEECCCCCcCcCcC-HHH
Confidence 999865433333 3333221111100000 0 178999988863 4565544444555666554 555
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccc-c---CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY-F---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~-~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
+++|+++|++|++++|+||+|.++ +.+....... . .....+.||||.++ +|+|+||+++++++++.+... .
T Consensus 176 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~---~ 252 (378)
T PRK07682 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKI---H 252 (378)
T ss_pred HHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHH---H
Confidence 999999999999999999999888 5433211111 1 12233679999999 899999999999998887632 2
Q ss_pred ccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
....++.+.+++.++.++++.... +..++.++++++.+.+.|++ .+.....+..+.++|..+..
T Consensus 253 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~p~g~~~~~~~~~~---------- 318 (378)
T PRK07682 253 QYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE----IGLTCHVPGGAFYAFPSISS---------- 318 (378)
T ss_pred HhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----CCCccCCCCeeEEEEEeccC----------
Confidence 234456788888888777752111 11233344455555555544 44332233344555655421
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|+ ++||.+.++. ..++|+++..+++++++++++|+++++++
T Consensus 319 --~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 319 --TGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred --CCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 1123477888876 6799999863 23467777888999999999999998764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=225.01 Aligned_cols=318 Identities=17% Similarity=0.149 Sum_probs=233.6
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC-C------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH--
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG-T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-- 71 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~-- 71 (368)
.++++||. .+|+++++..+++++. . ........+.+|.+.++++++. +..++.+||..|+..++.....
T Consensus 108 sSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~-e~all~sSGy~AN~~~i~aL~~~~ 186 (476)
T PLN02955 108 SGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK-EDCLVCPTGFAANMAAMVAIGSVA 186 (476)
T ss_pred eccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC-CcEEEECChHHHHHHHHHHHhhcc
Confidence 46788888 8999999999998883 1 1233457888999999999954 4566667899999999965420
Q ss_pred ---------hcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeE
Q 017633 72 ---------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 142 (368)
Q Consensus 72 ---------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~ 142 (368)
..+++.+|+.+...|.+..-.+.+... ..+.+++.+++||+++|++++++..++.+
T Consensus 187 ~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~---------------~~~a~~~~f~HND~~~Le~~L~~~~~~~~ 251 (476)
T PLN02955 187 SLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER---------------QGNVEVFVYRHCDMYHLNSLLSSCKMKRK 251 (476)
T ss_pred ccccccccccCCCCcEEEEeccchHHHHHHHHhccc---------------cCCceEEEeCCCCHHHHHHHHHhCCCCce
Confidence 023455777788888876555544321 00234566788899999999987656678
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc--cCccccccCCCcch----hhhhhhccCCccc
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGAQEYFGVTPDL----TTLGKIIGGGLPV 216 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g--~~~~~~~~~~~~di----~s~sK~~~~G~~i 216 (368)
+++++++++|.|.+.+ +++|.++|++||++||+||+|+.+..| ..+...++++.+|+ .||||++|. +.
T Consensus 252 ~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~--~G 325 (476)
T PLN02955 252 VVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC--HG 325 (476)
T ss_pred EEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc--cC
Confidence 9999999999999999 999999999999999999999644222 24556677776654 689999973 45
Q ss_pred eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 217 G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
|++++++++++.++..+..+.++| +.++..+++++++++.+.++ ..++++.++.+++++. .+... ..
T Consensus 326 Gfi~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~-------~G~~~----~s 393 (476)
T PLN02955 326 GFIACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL-------SGVDI----SS 393 (476)
T ss_pred ceeecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-------cCCCC----CC
Confidence 678889989898886555555555 55667777788888887543 3456677777777653 13221 24
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------cc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+++.+.+. ++....++++.|+++||++.+...|. +| ++..++++||+++++.|.++.+
T Consensus 394 PI~pI~ig-------------~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~ 460 (476)
T PLN02955 394 PIISLVVG-------------NQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLD 460 (476)
T ss_pred CEEEEEeC-------------CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHh
Confidence 55555552 45667889999999999998876553 23 4678899999999999998764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=218.23 Aligned_cols=329 Identities=18% Similarity=0.160 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHcC-CCCC----CCChhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 13 QVLAALGETMKKG-TSFG----APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 13 ~v~~a~~~~~~~~-~~~~----~~~~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
-+.+++++.+... .+.| .-+++...|++.+++.++ ..++|++|.|+.+++..++... ..++|.||++++
T Consensus 48 fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l--~~~GDeVii~eP 125 (420)
T KOG0257|consen 48 FVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGL--LNPGDEVIVFEP 125 (420)
T ss_pred HHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHH--cCCCCEEEEecC
Confidence 5888888877763 2212 234667777777777665 3678999999999999888655 368999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-CCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
.|..+.......++.++.+..-+.+ +. +..-++ .|.+++|.+++ ++++++++++.+|++|.+.+.++
T Consensus 126 ~fd~Y~~~~~maG~tpv~v~~~~~~-------g~-~~s~~~~~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsRee- 193 (420)
T KOG0257|consen 126 FFDCYIPQVVMAGGTPVFVPLKPKE-------GN-VSSSDWTLDPEELESKIT---EKTKAIILNTPHNPTGKVFSREE- 193 (420)
T ss_pred cchhhhhHHhhcCCcceeecccccc-------cc-ccCccccCChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHH-
Confidence 9998877777777776543322111 11 111111 28999999999 57888888888888887776655
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hccc---Cccc--cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQ--EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~---~~~~--~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
|++|+++|++||+++|.||+|..+ ..+. .++. ..+.+...+.|+||+|+ .|||+||+++++++...... .
T Consensus 194 Le~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~---v 270 (420)
T KOG0257|consen 194 LERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFP---V 270 (420)
T ss_pred HHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHH---H
Confidence 999999999999999999999777 5553 1222 23445566789999999 89999999999888887773 3
Q ss_pred cccccCCCCHHHHHHHHHHHHHHc---c-C------CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLK---E-P------GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~---~-~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
.+...+..++..+.|..+++..-. + + ++.+.++++++.+.+.|.+ .++....+..+.++|.++...
T Consensus 271 h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~----lg~~v~~p~gayyl~adfs~~ 346 (420)
T KOG0257|consen 271 HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEE----LGLKVTGPEGAYYLWADFSLA 346 (420)
T ss_pred hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHh----cCCccccCCCceEEEEecccc
Confidence 344555666666666666654322 1 1 1445566666666666655 455555666677888887622
Q ss_pred CCcccchhcccccHHHHHHHHHHHHc-CeeecCCCCCc-----------cccccCCCHHHHHHHHHHHHH
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEA-----------GFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~l~~ 363 (368)
..-++..... +..+.-.++.+|.++ |+.+-|..... .++.++-+++.++.+.++|++
T Consensus 347 ~~~~~~~~~~-~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 347 KSWPFFEEIL-EKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred ccCCcchhhc-cCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 1111110000 111235677888754 77777753221 234556678888888888873
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=227.22 Aligned_cols=319 Identities=21% Similarity=0.197 Sum_probs=223.0
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcCCC-------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.+++++|. .+|++++++.+++++... .+...+...+|++.++++++. +..++++||++|++.+++++....
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~-~~~l~~~sG~~an~~ai~~l~~~~ 129 (402)
T TIGR01821 51 CSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK-ESALVFTSGYVANDATLATLAKII 129 (402)
T ss_pred EccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC-CeEEEECchHHHHHHHHHHhhCCC
Confidence 36778888 788999999999987321 123467789999999999974 456777789999999998774332
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~ 152 (368)
++.+++.+..+|+.....+...+.+ ...++++|+++++++++... ++++++++++++++
T Consensus 130 -~~~~v~~~~~~h~s~~~~~~~~g~~-------------------~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~ 189 (402)
T TIGR01821 130 -PGCVIFSDELNHASMIEGIRHSGAE-------------------KFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSM 189 (402)
T ss_pred -CCCEEEEcchHhHHHHHHHHHcCCe-------------------EEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 3456666777887655444433321 12234458899999887532 36789999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCC--Ccchh--hhhhhccCCccceeeeehHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~~ 225 (368)
+|.+.+ +++|.++|++||++||+||+|+ |+ ..|. +.....++ .+|++ ||||+++. ..||+++++++
T Consensus 190 ~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~--~GG~i~~~~~~ 262 (402)
T TIGR01821 190 DGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-GIAERDGLMHRIDIIEGTLAKAFGV--VGGYIAASRKL 262 (402)
T ss_pred CCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-ccchhccCCCCCeEEEEechhhhcc--CCceeecCHHH
Confidence 999988 9999999999999999999996 44 2222 22334443 35665 99999983 12788889888
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
++.+......+ ..+.+.++.+++++.++++.+.+.+ +.++..++++++++.|++. ++. ...+.++++.+.+.
T Consensus 263 ~~~l~~~~~~~-~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~i~~i~~~- 335 (402)
T TIGR01821 263 IDAIRSYAPGF-IFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL----GIP-VIPNPSHIVPVIIG- 335 (402)
T ss_pred HHHHHHhCcCc-eecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc----CCC-cCCCCCCEEEEEeC-
Confidence 88876432221 2344678889999999999876542 3445566777777777653 322 12234566555441
Q ss_pred CCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
....+.++++.|++ +||.+.+... ..+| ++..++++|+++++++|++++++
T Consensus 336 ------------~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 336 ------------DAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred ------------CHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 22345788999875 5999987422 2333 46789999999999999998865
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=230.39 Aligned_cols=318 Identities=12% Similarity=0.052 Sum_probs=209.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+++++.+.+.....++++.....+|++.+++++ + ++ ++|++|+|+++++..++.++ ..++|.|++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~--~~~Gd~Vlv~ 123 (399)
T PRK07681 46 PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVY--ANPGDIILVP 123 (399)
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHh--CCCCCEEEEC
Confidence 3556888888776554445444455666777777665 2 45 78999999999999988766 3467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|.+....+. ..|..+...+.....++. .|++++++.+. +++++++++..+|++|.+++.++
T Consensus 124 ~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~~~ 187 (399)
T PRK07681 124 DPGYTAYETGIQ-MAGATSYYMPLKKENDFL------------PDLELIPEEIA---DKAKMMILNFPGNPVPAMAHEDF 187 (399)
T ss_pred CCCccchHHHHH-hcCCEEEEEecCCCCCCc------------CCHHHHHHhcc---ccceEEEEeCCCCCcCcCCCHHH
Confidence 999987654443 334433222221111111 17888988875 35666666633555666665444
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++||+++|+||+|.++ ..+.. ..... .+....+.||||.++ +|+|+||+++++++++.+..
T Consensus 188 -~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~--- 263 (399)
T PRK07681 188 -FKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQ--- 263 (399)
T ss_pred -HHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHH---
Confidence 999999999999999999999888 43321 11111 122334669999998 89999999999999888763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
......++.+.+++.++.++++.. +.+.++.++..+..++.+.+.+.+.+.....+..+.++|+.+.
T Consensus 264 ~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~----------- 330 (399)
T PRK07681 264 FKSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIP----------- 330 (399)
T ss_pred HHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECC-----------
Confidence 222345577888888877777521 2343443433344444444444444543223445777787763
Q ss_pred ccccHHHHHHHHHHHH-cCeeecCCC------CCccccccCCCHHHHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
...+..++++.|++ +||.+.++. ..++|+++..+++++++++++|+++
T Consensus 331 --~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 331 --KGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRNS 385 (399)
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 22235788888887 899999873 2346777777889999999999873
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=218.49 Aligned_cols=315 Identities=23% Similarity=0.263 Sum_probs=238.1
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC-CC------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~-~~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||. .+|++++++.+.+++. .. .....+.+.+|.+.++++++..+.++|+ ||-.|+..++... .
T Consensus 45 ~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~-SGy~AN~~~i~~l---~ 120 (388)
T COG0156 45 CSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFS-SGFVANLGLLSAL---L 120 (388)
T ss_pred eccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEc-ccchhHHHHHHHh---c
Confidence 46788998 8999999999999882 11 2345689999999999999755555555 7999999999766 3
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCC---CeEEEEEcccC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG---EIAAIILEPVV 150 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~---~~~~~~~~~~~ 150 (368)
+++.+|+.+.-.|.+..-.+.++ +.+++.+.++|+++||+.+++... +.+.|+++.++
T Consensus 121 ~~~dli~~D~lnHASiidG~rls-------------------~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVf 181 (388)
T COG0156 121 KKGDLIFSDELNHASIIDGIRLS-------------------RAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVF 181 (388)
T ss_pred CCCcEEEEechhhhhHHHHHHhC-------------------CCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccc
Confidence 45678888888888765544443 345666777899999999986211 47899999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCc---c--hhhhhhhccCCccceeeeehH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP---D--LTTLGKIIGGGLPVGAYGGRR 223 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~---d--i~s~sK~~~~G~~iG~v~~~~ 223 (368)
+|.|.+.| +++|++++++|+.+|++||+| .|+ .....+..+++|+.+ | +.||||+||+ -.|++.+++
T Consensus 182 SMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs--~Gg~v~g~~ 255 (388)
T COG0156 182 SMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS--SGGYIAGSA 255 (388)
T ss_pred cCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc--cCceeeCcH
Confidence 99999999 999999999999999999999 666 322234556667653 3 3589999993 245788899
Q ss_pred HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
.+++.+....+.+.++| +.+|..++++.++++.+.+ .+.++++.++..++++.++.. ++. ..+...+++.+.+
T Consensus 256 ~~~d~L~~~ar~~ifSt-alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~----~~~-~~~s~s~I~pv~~ 329 (388)
T COG0156 256 ALIDYLRNRARPFIFST-ALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL----GLV-LLPSESPIIPVIL 329 (388)
T ss_pred HHHHHHHHhCCceeccC-CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCc-cCCCCCCeeeeEe
Confidence 99999987665555454 6788888899999998875 456777888888887444442 222 1334455666665
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc---------ccccCCCHHHHHHHHHHHHHH
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~---------~~~~~~~~~~i~~~~~~l~~~ 364 (368)
. ++....+++..|+++||++.+...|.+ +++..++++||+++++.|.++
T Consensus 330 g-------------d~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 330 G-------------DEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred C-------------CHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 3 556678999999999999998765543 357788999999999998865
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=225.01 Aligned_cols=323 Identities=16% Similarity=0.113 Sum_probs=216.8
Q ss_pred CCcHHHHHHHHHHHHcCCC-CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 9 PSYLQVLAALGETMKKGTS-FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
+.+|.+++++.+++..... .+.+.....+++++++++++ +++++++++|+++++..++..+. .+++.|++.+++|+
T Consensus 41 ~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~p~y~ 118 (380)
T PRK06225 41 GPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL--SPGDNAVTPDPGYL 118 (380)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc--CCCCEEEEcCCCCc
Confidence 3678899999998875322 23344567899999999998 67899999999999999997652 45678999888887
Q ss_pred CCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
... ..+...|..+...... ...+. .-|++++++.++ ++++++++...++++|.+++ .+.+++
T Consensus 119 ~~~-~~~~~~g~~~~~v~~~~~~~~~------------~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~-~~~~~~ 181 (380)
T PRK06225 119 IID-NFASRFGAEVIEVPIYSEECNY------------KLTPELVKENMD---ENTRLIYLIDPLNPLGSSYT-EEEIKE 181 (380)
T ss_pred chH-HHHHHhCceEEeeccccccCCc------------cCCHHHHHhhcC---CCceEEEEeCCCCCCCcCCC-HHHHHH
Confidence 543 3333344433221111 00010 017899998886 35666554444445666554 445999
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCcccc-ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~-~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
|+++|++||+++|+||+|.+|..+...... ......++.||||.++ +|+|+||+++++++++.+... ...+++.
T Consensus 182 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~----~~~~~~~ 257 (380)
T PRK06225 182 FAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSI----VINDLGT 257 (380)
T ss_pred HHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHH----HhcccCC
Confidence 999999999999999999877222211111 1123345679999998 799999999999988887631 2245677
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CC-ceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
+.+++.++.++++.. +.+.+++++..+..++.+.+.+.+. +. ....+..+.++|+.+... ..+.
T Consensus 258 ~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~ 323 (380)
T PRK06225 258 NVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA------------GIDP 323 (380)
T ss_pred CHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc------------cCCH
Confidence 888888877776532 3455555555555555555555443 22 112344566777776321 1235
Q ss_pred HHHHHHHHHcCeeecCCC-------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 322 ARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~-------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.++++.|.++||.+.++. ...+|+++..+++++++++++|+++++++
T Consensus 324 ~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~ 377 (380)
T PRK06225 324 EDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETL 377 (380)
T ss_pred HHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999998862 22467777788999999999999998653
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=226.56 Aligned_cols=319 Identities=19% Similarity=0.177 Sum_probs=225.8
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcCCC-------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||. .+|+|++++.+++++... .....+.+.+|+++++++++. +.+++++||++|++.++++.....
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~-~~~~~~~SG~~An~~ai~~l~~~~ 129 (406)
T PRK13393 51 CSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK-EAALLFTSGYVSNWAALSTLGSRL 129 (406)
T ss_pred ecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC-CcEEEeCCcHHHHHHHHHHhhcCC
Confidence 36779999 899999999999987421 112345789999999999975 567777789999999998542221
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~ 152 (368)
++.+|+.+..+|++........+. ++..++++|++++++.++.. +++++++++++++++
T Consensus 130 -~g~~I~~~~~~H~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~ 189 (406)
T PRK13393 130 -PGCVILSDELNHASMIEGIRHSRA-------------------EKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSM 189 (406)
T ss_pred -CCCEEEEccchhHHHHHHHHHcCC-------------------eEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCC
Confidence 235778888899876655543322 22344556889999888753 236789999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCCC--cchh--hhhhhccCCccceeeeehHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT--PDLT--TLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~~--~di~--s~sK~~~~G~~iG~v~~~~~~ 225 (368)
+|.+.+ +++|.++|++||+++|+||+|+ |+ +.|..+ ....++. +|++ ||||+++. ..||+++++++
T Consensus 190 ~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~--~GG~~~~~~~~ 262 (406)
T PRK13393 190 DGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV--MGGYITGSAAL 262 (406)
T ss_pred CCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc--cCceeeCCHHH
Confidence 999999 9999999999999999999995 55 333322 3444543 4655 99999983 12788888888
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
++.+...... ...+.+.++.+++++.++++.+.+.. ...++.++.+++++.|++. +.. .+.+.++++.+.+.
T Consensus 263 ~~~l~~~~~~-~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~i~~v~~~- 335 (406)
T PRK13393 263 CDFIRSFASG-FIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA----GIP-HLPNPSHIVPVMVG- 335 (406)
T ss_pred HHHHHHhCcC-ceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc----CCC-cCCCCCCeEEEEeC-
Confidence 8877643221 11355678888999999998775432 2345567777777777663 222 22345666665431
Q ss_pred CCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++....++++.|++ +||.+.+... ..+| +++.++++|+++++++|++++.+
T Consensus 336 ------------~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 336 ------------DPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred ------------CHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 22345789999987 5999976421 2344 47788999999999999998764
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=226.62 Aligned_cols=318 Identities=21% Similarity=0.212 Sum_probs=221.9
Q ss_pred ceeccCCC-cHHHHHHHHHHHHcCCC-------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFPS-YLQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~~-~~~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+++++|++ +|++++++.+++++... .+.+.+...+|++.++++++. +..++.+||++|+..++.++....+
T Consensus 53 s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~-~~~~~~~sG~~an~~ai~~l~~~~~ 131 (407)
T PRK09064 53 SNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK-EAALVFTSGYVSNDATLSTLAKLIP 131 (407)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC-CcEEEECcHHHHHHHHHHHHhCCCC
Confidence 67789995 99999999998887421 123577899999999999874 4556666799999999987644323
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNS 153 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~ 153 (368)
+.+++.+..+|++....+...+. +...++++|++++++.+++.. +++++++++++++++
T Consensus 132 -~~~i~~~~~~h~s~~~~~~~~~~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~ 191 (407)
T PRK09064 132 -DCVIFSDELNHASMIEGIRRSRC-------------------EKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMD 191 (407)
T ss_pred -CCEEEEeCcchHHHHHHHHHcCC-------------------cEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCC
Confidence 45566565556654333332221 123344558999999987532 467899999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCC--Ccchh--hhhhhccCCccceeeeehHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
|.+.+ +++|.++|++||++||+||+|+ |+ ..|..+ ....++ .+|++ ||||+++. ..||++++++++
T Consensus 192 G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--~GG~~~~~~~~~ 264 (407)
T PRK09064 192 GDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--MGGYIAGSAALV 264 (407)
T ss_pred ccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--cCceEecCHHHH
Confidence 99888 9999999999999999999996 54 333332 334444 35665 99999982 127888898888
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
+.+......+ ..+.+.++.+++++.++++.+.+.+ ..+++.++++++++.|++. ++. .....++++.+.+.
T Consensus 265 ~~l~~~~~~~-~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~iv~i~~~-- 336 (407)
T PRK09064 265 DAVRSYAPGF-IFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA----GIP-VMPNESHIVPVMVG-- 336 (407)
T ss_pred HHHHHhCccc-cccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCC-CCCCCCCEEEEEeC--
Confidence 8776432221 2344678888899999999886543 3466777888888877764 322 12233556555542
Q ss_pred CCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......++++.|++ +||.+.+... ..+| +++.++++|++++++.|++++.+
T Consensus 337 -----------~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 337 -----------DPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred -----------CHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 22345789999875 5999986422 2234 46778999999999999998765
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=228.87 Aligned_cols=336 Identities=13% Similarity=0.070 Sum_probs=208.3
Q ss_pred ceeccCCCcH----------HHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHH
Q 017633 3 QLIILFPSYL----------QVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMG 64 (368)
Q Consensus 3 ~~~~~g~~~~----------~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~ 64 (368)
.+++|++++| ++.+++.+.+.....+ +.+.....++++++++++ + ++++|++|+|+++++..
T Consensus 67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~ 146 (462)
T PLN02187 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146 (462)
T ss_pred CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHH
Confidence 4677787754 4788888877654333 335556677888887765 2 57899999999999999
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEE
Q 017633 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 144 (368)
Q Consensus 65 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~ 144 (368)
++..+. .++|.|++.+++|..+... ....|.++........+.+. -|+++++++++. ....++
T Consensus 147 ~~~~l~--~pGd~Vlv~~P~y~~y~~~-~~~~g~~~~~~~l~~~~~~~------------~d~~~l~~~~~~--~~~~v~ 209 (462)
T PLN02187 147 VFESLA--RPNANILLPRPGFPHYDAR-AAYSGLEVRKFDLLPEKEWE------------IDLEGIEAIADE--NTVAMV 209 (462)
T ss_pred HHHHhc--CCCCEEEEeCCCCccHHHH-HHHcCCEEEEEeCccccCCc------------cCHHHHHHhcCC--CcEEEE
Confidence 998663 5778999999999876433 33344433322221111110 079999988863 244566
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-ccccc-CC--Ccchhhhhhhcc-CCcccee
Q 017633 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-GV--TPDLTTLGKIIG-GGLPVGA 218 (368)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~~~-~~--~~di~s~sK~~~-~G~~iG~ 218 (368)
+++|+ |++|.+++ .+.+++|+++|++||+++|+||+|.++ +.+..+ ....+ +. ...+.||||.|+ +|||+||
T Consensus 210 i~nP~-NPTG~v~s-~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~ 287 (462)
T PLN02187 210 VINPN-NPCGNVYS-HDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGW 287 (462)
T ss_pred EeCCC-CCCCCccC-HHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEE
Confidence 66664 55666555 445999999999999999999999987 444321 22111 11 233468999988 8999999
Q ss_pred eeeh-H-HH---HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce--EE
Q 017633 219 YGGR-R-DI---MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CG 291 (368)
Q Consensus 219 v~~~-~-~~---~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~ 291 (368)
++++ + .+ ++.+...... ...+.+++.+.+.++.++++.- .+.+.++.++..+.-++.+.+.+...+... ..
T Consensus 288 ~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~s~~~Q~a~~~~L~~~-~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~ 365 (462)
T PLN02187 288 IALNDPEGVFETTKVLQSIKQN-LDVTPDPATIIQAALPAILEKA-DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKK 365 (462)
T ss_pred EEecCchhHHHHHHHHHHHHHh-ccccCCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCC
Confidence 9873 3 22 2333311111 1122245788888888777521 123444433333333444444444443221 12
Q ss_pred eeccceEEEEeecCCCcccchhcccccHHHHHHH-HHHHHcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 292 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+..+.++|+.+..... ....+..+++ ..+.++||.+.|+. ..++|+++..+++++++++++|.++++
T Consensus 366 P~gg~fl~~~l~~~~~--------~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 366 PESCTYLLTKLELSLM--------DNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCT 437 (462)
T ss_pred CCEeEEEEeecChhhC--------CCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 3446777776632110 0001234555 44578899999974 235678888899999999999999885
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 438 ~ 438 (462)
T PLN02187 438 R 438 (462)
T ss_pred H
Confidence 4
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=224.52 Aligned_cols=328 Identities=13% Similarity=0.056 Sum_probs=205.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C----CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P----SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+++++.+.+......+|+.....+|++++++++ + +++ +|++|+|+++++..++.+. ..+++.|++
T Consensus 58 ~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~--~~~gd~Vlv 135 (410)
T PRK06290 58 ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCF--INPGDVTLM 135 (410)
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHh--CCCCCEEEE
Confidence 4566888887766543233345566778888888774 2 234 7999999999999888766 356789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|......+ ...|.++...+.....++. .|++++++.+. +++++++++..+|++|.+++.
T Consensus 136 ~~P~y~~~~~~~-~~~g~~v~~v~~~~~~~~~------------~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~s~- 198 (410)
T PRK06290 136 TVPGYPVTGTHT-KYYGGEVYNLPLLEENNFL------------PDLDSIPKDIK---EKAKLLYLNYPNNPTGAVATK- 198 (410)
T ss_pred eCCCCccHHHHH-HHcCCEEEEEecCCCcCCc------------CCHHHHHHhhc---ccceEEEEECCCCCCCcCCCH-
Confidence 999998764433 3334433222221111111 17888888876 356666666445556666654
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+.+++|+++|++||++||+||+|.++ ..+....+.. .+....+.||||.++ +|+|+||+++++++++.+....
T Consensus 199 e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~- 277 (410)
T PRK06290 199 EFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVK- 277 (410)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHH-
Confidence 44999999999999999999999887 4332211111 122234569999997 8999999999999888776322
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....+.+.+++.++..+++ +.++.++.++..+..++.+.+.+.+.+.....+..+.++|+.+........
T Consensus 278 --~~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~---- 348 (410)
T PRK06290 278 --DNNDSGQFIAIQKAGIYALD---HPEITEKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGI---- 348 (410)
T ss_pred --hccccCCcHHHHHHHHHHhh---CcHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccccCC----
Confidence 22333445677777666664 334444444444444444444444444332223345566666532110000
Q ss_pred ccccHHHHHHHHHHHHcC-eeecCCCCC--ccccccC---CCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGMLEEG-VYFAPSQFE--AGFTSLA---HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~G-i~~~~~~~~--~~~~~~~---~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|+++| +.+.|+... ++|+.++ .++++.++++++|++.|.++
T Consensus 349 --~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 349 --KFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred --CCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 0013578999999885 555565432 4566554 48899999999999998764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=223.25 Aligned_cols=325 Identities=9% Similarity=0.077 Sum_probs=204.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-Ch----hHHHHHHHHHhhCC---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAP-CL----LENVLAEMVISAVP---SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~-~~----~~~~l~~~l~~~~~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+.+++.+.+......+|+ .. +.+.+++++++.++ .+ +++++|+|+++++..++..+ ..++|.|++
T Consensus 54 p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l--~~~Gd~Vlv 131 (405)
T PRK06207 54 PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAAT--VARGDKVAI 131 (405)
T ss_pred CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh--cCCCCEEEE
Confidence 4467888888877653222222 23 34444444555444 34 78999999999999998766 356889999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|++....+ ...|.++.......... .+-.. -|+++++++++. +++++++...+|++|.+++.+
T Consensus 132 ~~P~y~~~~~~~-~~~g~~v~~v~~~~~~~------~~~~~---~d~~~l~~~~~~---~~k~v~l~~P~NPTG~~~s~e 198 (405)
T PRK06207 132 VQPDYFANRKLV-EFFEGEMVPVQLDYLSA------DKRAG---LDLDQLEEAFKA---GVRVFLFSNPNNPAGVVYSAE 198 (405)
T ss_pred eCCCchhHHHHH-HHcCCEEEEEeccccCc------ccCCC---cCHHHHHHhhhh---cCeEEEECCCCCCCCcCCCHH
Confidence 999998764333 33344332211110000 00000 179999998873 455554444455667666655
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-ccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+ +++|+++|++||+++|+||+|.++ ..+... ....+ +....+.||||.++ +|+|+||+++++++++.+....
T Consensus 199 ~-l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~ 277 (405)
T PRK06207 199 E-IAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQ 277 (405)
T ss_pred H-HHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHH
Confidence 4 999999999999999999999987 444321 11111 12234568999999 9999999999999888876322
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccch
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
.....+.+.+.+.++..+++. ..++.++..+.....++.+.+.+.+. +.....+..+.++|+.+...
T Consensus 278 ---~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~------- 345 (405)
T PRK06207 278 ---AIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRL------- 345 (405)
T ss_pred ---hHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCccc-------
Confidence 223344566777777666641 11233333333333344454444444 33222344567888876310
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+ ++||.+.|+.. .++|+++..+++++++++++|++++++
T Consensus 346 -----~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 346 -----AVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIER 402 (405)
T ss_pred -----CCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 123467889887 67999999742 346777778899999999999998865
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=218.32 Aligned_cols=315 Identities=17% Similarity=0.138 Sum_probs=218.7
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
|++| .+|.+++++.+.++.. +.||+....++++.++++++ ..+.|++++|+++.++..++++. .++|.|++..
T Consensus 32 nP~g-p~~~~~~~~~~~~~~~--~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~--~~gd~vl~~~ 106 (356)
T COG0079 32 NPYG-PPPKVIEAIRAALDKL--NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV--EPGDTVLIPE 106 (356)
T ss_pred CCCC-CCHHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh--cCCCEEEEcC
Confidence 5666 5588999998887753 34566688999999999997 46899999999999999888774 3568999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|.-+...+... |.++...+... +. .|++.+.+.+.. +++++++...||++|...+.++
T Consensus 107 Ptf~~Y~~~a~~~-g~~~~~v~~~~---~~------------~d~~~~~~~~~~---~~~lv~i~nPNNPTG~~~~~~~- 166 (356)
T COG0079 107 PTFSMYEIAAQLA-GAEVVKVPLKE---FR------------LDLDAILAAIRD---KTKLVFLCNPNNPTGTLLPREE- 166 (356)
T ss_pred CChHHHHHHHHhc-CCeEEEecccc---cc------------cCHHHHHHhhhc---CCCEEEEeCCCCCCCCCCCHHH-
Confidence 9987664443333 32222211111 11 178888888873 4554444444445666666554
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t 240 (368)
++++.+.+.+ +.+||+||+|.+| ...........+...-+-||||+|| +|+|+||+++++++++.+...+ ..
T Consensus 167 l~~l~~~~~~-~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr-----~p 240 (356)
T COG0079 167 LRALLEALPE-GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVR-----PP 240 (356)
T ss_pred HHHHHHhCCC-CcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhc-----CC
Confidence 8888888877 9999999999998 4111110111111122459999999 9999999999999999998543 77
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
|+.|.++++++.++++ +.++.+...++...-|++|.+.+...++....++.++|+.+.+. +..
T Consensus 241 ~~v~~~a~~aa~aal~---~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~~-------------~~~- 303 (356)
T COG0079 241 FNVSSPALAAAIAALR---DADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRVP-------------DAE- 303 (356)
T ss_pred CCCCHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEECC-------------Ccc-
Confidence 8889999999988876 33556666666666667777766666633245555788787762 222
Q ss_pred HHHHHHHHHHcCeeecCCCC-C--cccccc-CCCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLEEGVYFAPSQF-E--AGFTSL-AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~-~--~~~~~~-~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+.+.|.++||.++.... + ..+++. .-++++.++++++|++++..
T Consensus 304 ~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 304 AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 46899999999999999854 1 113332 34778889999999988753
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=226.45 Aligned_cols=313 Identities=12% Similarity=0.076 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
|.+.+++.+.......|+ +.....+|++.++++++ ..++|++|+|+++++..++..+. .++|.|++.+++|..
T Consensus 101 p~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~--~pgd~Vlv~~P~y~~ 177 (431)
T PRK15481 101 PDLSRYFARLSRTPRLYG-DAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL--LPGDSVAVEDPCFLS 177 (431)
T ss_pred HHHHHHHHHhhhhhhhcC-CcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC--CCCCEEEEeCCCcHH
Confidence 456666666544322333 33445678888888764 24699999999999999997663 467899999999987
Q ss_pred CchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 88 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
+...+.. .|..+...+.. ..++ |+++++++++. +++++++.|+++|++....+.+.+++|.
T Consensus 178 ~~~~~~~-~g~~~~~v~~~-~~g~--------------~~~~l~~~~~~---~~k~i~~~p~p~NPTG~~~s~~~~~~l~ 238 (431)
T PRK15481 178 SINMLRY-AGFSASPVSVD-AEGM--------------QPEKLERALAQ---GARAVILTPRAHNPTGCSLSARRAAALR 238 (431)
T ss_pred HHHHHHH-cCCeEEeeccC-CCCC--------------CHHHHHHHHhc---CCCEEEECCCCCCCCCccCCHHHHHHHH
Confidence 7544443 33333222121 1122 78999999873 5677777765555433444566699999
Q ss_pred HHHHHh-CCEEEEehhhhch-hcccCcccc-ccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 168 RITKEN-GALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 168 ~l~~~~-~~~li~De~~~~~-~~g~~~~~~-~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
++|++| ++++|+||+|.+| ..+...... .......+.||||.+++|+|+||+++++++++.+... ....+++.|
T Consensus 239 ~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~---~~~~~~~~s 315 (431)
T PRK15481 239 NLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSARLRLR---LNSGTQWVS 315 (431)
T ss_pred HHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHH---HhccccCCC
Confidence 999999 9999999999888 332111111 1122234569999999999999999999888877521 122334578
Q ss_pred HHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
.+++.++.++++ +.++ .+..++..+..++.+.+.+...+.....+..|.++|+.+. . +.
T Consensus 316 ~~~q~a~~~~l~---~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~-------------~--~~ 377 (431)
T PRK15481 316 HLLQDLVYACLT---DPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLD-------------T--DS 377 (431)
T ss_pred HHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECC-------------C--CH
Confidence 888888887776 3333 2223333333333333444444443334566778888762 1 24
Q ss_pred HHHHHHHHHcCeeecCCCCC-------ccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 322 ARFYRGMLEEGVYFAPSQFE-------AGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~~-------~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
.++++.|.++||.+.++..+ .+|+++. .+++++++++++|++++++
T Consensus 378 ~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~~ 431 (431)
T PRK15481 378 QATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALNR 431 (431)
T ss_pred HHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 67888999999999997422 3466655 4789999999999998753
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=222.12 Aligned_cols=322 Identities=15% Similarity=0.080 Sum_probs=200.7
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
+....+|.+.+++.+.+.......| +.....+|++++++++ + .++ ++++|+|+++++..++..+ ..+++
T Consensus 42 p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~--~~~gd 119 (389)
T PRK08068 42 PDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCL--MNPGD 119 (389)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh--CCCCC
Confidence 3333456788888887765322223 4455677888888775 3 345 7999999999999887655 24678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++..++|..+...+ ...|..+...+.....++. -|++++++.+.. +++++++...+|++|.+
T Consensus 120 ~vlv~~P~y~~~~~~~-~~~g~~~~~i~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~l~~P~NPTG~~ 183 (389)
T PRK08068 120 TILVPDPGYPDYLSGV-ALARAQFETMPLIAENNFL------------PDYTKIPEEVAE---KAKLMYLNYPNNPTGAV 183 (389)
T ss_pred EEEEcCCCCcchHHHH-HhcCCEEEEeecccccCCC------------CCHHHHHHhccc---cceEEEEECCCCCCCCc
Confidence 8999999998764443 3344433222221111211 178888888762 45555555334556665
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-Ccc-cccc---CCCcchhhhhhhcc-CCccceeeeehHHHHHHh
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEYF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~-~~~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~ 229 (368)
++.+ .+++|+++|++|++++|+||+|.++ ..+. ... .... +....+.||||.|+ +|+|+||+++++++++.+
T Consensus 184 ~s~~-~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l 262 (389)
T PRK08068 184 ATKA-FFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAI 262 (389)
T ss_pred CCHH-HHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHH
Confidence 5544 4999999999999999999999877 4432 111 1111 12234569999998 899999999999988887
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.... .....+.+++.+.++..++. ..+.+.++.++..+..++.+.+.+...+.....+..+.++|+.+.
T Consensus 263 ~~~~---~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~g~~~~~v~~~------ 331 (389)
T PRK08068 263 NLLQ---DHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVP------ 331 (389)
T ss_pred HHHH---hhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECC------
Confidence 6322 11222344455566555553 112333333333333333444433344433222333455677662
Q ss_pred cchhcccccHHHHHHHHHHHH-cCeeecCCC------CCccccccCCCHHHHHHHHHHHHHH
Q 017633 310 FEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
...++.++++.|++ +||.+.++. ..++|+++..+++.+.+++++|+++
T Consensus 332 -------~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 332 -------KGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred -------CCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 22235789999986 599999863 2356777777888888888888764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-28 Score=219.81 Aligned_cols=327 Identities=16% Similarity=0.168 Sum_probs=218.5
Q ss_pred CceeccCC-CcHHHHHHHHHHHHc-------CCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKK-------GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||. .+|++++++.+++++ ...++.....+.+|+++++++++..+.++++ ||+.++..++..+ ..
T Consensus 4 ~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~-sG~~a~~~~i~~l--~~ 80 (392)
T PLN03227 4 ATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYS-DGASTTSSTVAAF--AK 80 (392)
T ss_pred cCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEec-CcHHHHHHHHHHh--CC
Confidence 46788888 889999999999987 2233444568999999999999765555554 6888888777655 35
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-----------CCCeE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-----------KGEIA 142 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-----------~~~~~ 142 (368)
++|.|++.+..|... ...+.+.+ .++..++++|.+++++.+... .++++
T Consensus 81 ~GD~Vl~~~~~h~s~-~~~~~l~~-------------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~ 140 (392)
T PLN03227 81 RGDLLVVDRGVNEAL-LVGVSLSR-------------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRR 140 (392)
T ss_pred CCCEEEEeccccHHH-HHHHHHcC-------------------CeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcE
Confidence 778888777655433 22222221 123334555666666544321 13678
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc--CccccccCCCc----chhh--hhhhccCC
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYFGVTP----DLTT--LGKIIGGG 213 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~~~~~~~~~----di~s--~sK~~~~G 213 (368)
++++|++++++|.+.+ +++++++|++||+++|+||+|+ + ..|. .+..+++++.| |+++ +||+++
T Consensus 141 ~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-- 213 (392)
T PLN03227 141 FLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-- 213 (392)
T ss_pred EEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh--
Confidence 9999999999999999 9999999999999999999995 4 2222 25677888877 8765 556554
Q ss_pred ccceeeeehHHHHHHhcCCCCccccccCCCC--HHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 214 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--PLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 214 ~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
++.|++++++++++.++. ..+..+++.+ +..+.++.+++.. +..+++.++++++.+++++.|++. ..+....
T Consensus 214 ~~gg~v~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~~~~~~~ 288 (392)
T PLN03227 214 SVGGMTVGSEEVVDHQRL---SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--SHPYALK 288 (392)
T ss_pred ccCcEEecCHHHHHHHHH---hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCccccc
Confidence 566778888888877652 2233455554 7677777777754 444568889999999999999862 2222112
Q ss_pred Ee--------eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-----cc--------ccccCC
Q 017633 291 GG--------YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-----AG--------FTSLAH 349 (368)
Q Consensus 291 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~~--------~~~~~~ 349 (368)
++ ..++++.+.+....... ...+.....++++.|+++|+.+.+.+.. .. +++..+
T Consensus 289 ~rg~~~~~~~~~~~i~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~ 364 (392)
T PLN03227 289 LRNRLVITSDPISPIIYLRLSDQEATR----RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASH 364 (392)
T ss_pred cccccccCCCCCCCEEEEEeCCHHHhh----hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCC
Confidence 22 23567777773211000 0000112358899999999998653211 11 124556
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 017633 350 SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~~ 367 (368)
|++|+++++++|++++.+
T Consensus 365 t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 365 TREDIDKLLTVLGEAVEA 382 (392)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=222.53 Aligned_cols=309 Identities=14% Similarity=0.102 Sum_probs=215.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
|+|| .+|++++++.+.+.... .++.....+|++.++++++ ++++|++++|+++++..++.++. .+++.|++.++
T Consensus 39 n~~~-~~~~v~~a~~~~~~~~~--~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~--~~gd~vlv~~P 113 (366)
T PRK01533 39 NPFG-CSPRVLDELQKSWLDHA--LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL--KAGDNIVTAGA 113 (366)
T ss_pred CCCC-CCHHHHHHHHHHHHhcC--cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc--CCCCEEEEcCC
Confidence 3444 67789999988765532 3466677899999999998 78999999999999999987662 46788999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|......+ ...|..+...+. ..+.. |+++++++++. +++++++...+|++|.+++.++ +
T Consensus 114 ~y~~~~~~~-~~~g~~v~~v~~--~~~~~-------------d~~~l~~~~~~---~~~~v~i~~P~NPTG~~~~~~~-l 173 (366)
T PRK01533 114 TFPQYRHHA-IIEGCEVKEVAL--NNGVY-------------DLDEISSVVDN---DTKIVWICNPNNPTGTYVNDRK-L 173 (366)
T ss_pred cHHHHHHHH-HHcCCEEEEeec--CCCCc-------------CHHHHHHHhCc---CCcEEEEeCCCCCCCCCcCHHH-H
Confidence 887765443 333433322111 11111 89999988863 4555555544555676666444 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccC-ccc---cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~---~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
++|+++|++++ ++|+||+|.+| ..+.. ... +..+....+.||||.++ +|+|+||+++++++++.+....
T Consensus 174 ~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~---- 248 (366)
T PRK01533 174 TQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR---- 248 (366)
T ss_pred HHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc----
Confidence 99999998876 57789999887 33211 111 11122334569999999 9999999999999988887422
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+++.|.+++.++.++++ ++++.+++.+..+..++++.+.+...+.. ...+.++++|+.+.
T Consensus 249 -~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~nf~~~~~~-------------- 309 (366)
T PRK01533 249 -LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIP-FYQSQTNFIFLPVE-------------- 309 (366)
T ss_pred -CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCCCcCcEEEEeCC--------------
Confidence 346789999999888875 44566666666666666666666555543 33456778888651
Q ss_pred cHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+..++.+.|+++||.|++. ...+|++ ..+.+++++++++|+++++
T Consensus 310 --~~~~~~~~l~~~GI~Vr~~-~~~iRis-~~~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 310 --NGGEIYEACAHAGFIIRPF-PNGVRIT-VGTREQNEGVISVLQQHFE 354 (366)
T ss_pred --CHHHHHHHHHHCCcEEccC-CCceEEe-CCCHHHHHHHHHHHHHHHH
Confidence 1367899999999999985 2344554 4477999999999998874
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-28 Score=219.85 Aligned_cols=321 Identities=14% Similarity=0.092 Sum_probs=204.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhh----CC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISA----VP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+++++.+.+.+....+.+.....++++.++++ ++ .++++++++|+++++..++.... .+++.|++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--~~gd~vl~~~ 115 (382)
T PRK06108 38 TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV--GPGDEVVAVT 115 (382)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc--CCCCEEEEeC
Confidence 366899999888766433233334445566655554 34 46899999999999999987663 4678899988
Q ss_pred CCCCCCchhhhhhcCCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+.|...... ....|..+...+... ..++. .|++++++.++ +++++++++..+|++|.++ +.+
T Consensus 116 p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~------------~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~-~~~ 178 (382)
T PRK06108 116 PLWPNLVAA-PKILGARVVCVPLDFGGGGWT------------LDLDRLLAAIT---PRTRALFINSPNNPTGWTA-SRD 178 (382)
T ss_pred CCccchHHH-HHHCCCEEEEeeCCCCCCCcc------------CCHHHHHHhcC---ccceEEEEECCCCCCCccc-CHH
Confidence 888765433 333343332221111 01110 17899998886 3566666655555567665 455
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hc-ccC-cc-cccc---CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RL-AYG-GA-QEYF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~-g~~-~~-~~~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
.+++|+++|++||+++|+||+|.++ .. +.. .. .+.. +...-+.||||.++ +|+|+||+++++++++.+..
T Consensus 179 ~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~-- 256 (382)
T PRK06108 179 DLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEK-- 256 (382)
T ss_pred HHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHH--
Confidence 5999999999999999999999888 43 211 11 1111 11122568999998 79999999999988887763
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccch
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
.....+.+++.+.+.++..+++.. +++.+.++++.+..++.+.+.+.+. +.....+..+.++|+.+..
T Consensus 257 -~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~-------- 325 (382)
T PRK06108 257 -LIEYNTSCVAQFVQRAAVAALDEG--EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPG-------- 325 (382)
T ss_pred -HHHhcccCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCC--------
Confidence 222344567888888887777521 2333444444444444554444433 2222222335556766521
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+ ++||.+.++. ..++|+++..+++++++++++|++++++
T Consensus 326 -----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 382 (382)
T PRK06108 326 -----VTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLAR 382 (382)
T ss_pred -----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 123467888886 5799998863 2346777777999999999999998753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-28 Score=220.55 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=200.6
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+.+++.+.+.....+ +.+.....+|++++++++ + +++ +|++|+|+++++..++.++. .++|.|++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~--~~gd~Vlv 121 (388)
T PRK07366 44 APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL--NPGDFALL 121 (388)
T ss_pred CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC--CCCCEEEE
Confidence 3678899998877543222 223345567777777765 3 356 69999999999999887652 46789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|..+...+.. .|..+.........++. .|++++++.+. ++++++++.+.+|++|.+.+.
T Consensus 122 ~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~s~- 184 (388)
T PRK07366 122 LDPGYPSHAGGVYL-AGGQIYPMPLRAENDFL------------PVFADIPTEVL---AQARLMVLSYPHNPTTAIAPL- 184 (388)
T ss_pred cCCCCcchHHHHHh-cCCEEEEEECCCccCCC------------CCHHHHHHhhc---ccceEEEEeCCCCCCCccCCH-
Confidence 99999887544433 33333222221111111 16778877665 245666666655666766654
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC--cccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~--~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
+.+++|+++|++||++||+||+|.++ ..+.. ...... .....+.||||.++ +|+|+||+++++++++.+...
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~ 264 (388)
T PRK07366 185 SFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQV 264 (388)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHH
Confidence 44999999999999999999999988 43321 111111 11233469999998 899999999999998887632
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
. ....++..+..+.++.+++. ..+++.++.++..+..++.+.+.+.+.+.....+..+.++|+.+....
T Consensus 265 ~---~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~------ 333 (388)
T PRK07366 265 K---AVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPW------ 333 (388)
T ss_pred H---hhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCccc------
Confidence 2 11222222333344444442 123344444444444444444444444443334556778888763210
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
..+..++++.|+ ++||.+.|+. ..++|+++..+++++++++++|++++
T Consensus 334 -----~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 334 -----QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred -----CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 012467777774 6799999973 23467777778999999999998764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=220.10 Aligned_cols=322 Identities=15% Similarity=0.102 Sum_probs=207.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+++++.+.+......+.+.....++++.+++++ + +++++++|+|+++++..++... ..+++.|++.+
T Consensus 46 ~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~--~~~gd~vlv~~ 123 (387)
T PRK08960 46 TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL--VDPGKHWLLAD 123 (387)
T ss_pred CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh--cCCCCEEEEcC
Confidence 3668999998888753222334455667777777765 2 5789999999999999998766 35788999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..+...+. ..+.++...++....++. .|++++++.+++ ....+++++| +|++|.+++. +.
T Consensus 124 p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~--~~~~i~i~~p-~NPtG~~~~~-~~ 186 (387)
T PRK08960 124 PGYPCNRHFLR-LVEGAAQLVPVGPDSRYQ------------LTPALVERHWNA--DTVGALVASP-ANPTGTLLSR-DE 186 (387)
T ss_pred CCCcchHHHHH-hcCCeEEEEecCcccCCC------------CCHHHHHHHhCc--cceEEEEECC-CCCCCcCcCH-HH
Confidence 99988754433 334333222221111110 178999988873 2334455554 4556666654 44
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCcc-ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
+++|+++|++||+++|+||+|.++ ..+.... .........+.||||.++ +|+|+||+++++++++.+.. .....
T Consensus 187 ~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~---~~~~~ 263 (387)
T PRK08960 187 LAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEK---LAQNL 263 (387)
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHH---HHhhh
Confidence 999999999999999999999887 4322111 111111223458999998 89999999999988887763 22334
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhccccc
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
+.+.+.+.+.++.++++. ..+.+.++.++..+..++.+.+.+...+... ..+..+.++|+++... .
T Consensus 264 ~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~------------~ 330 (387)
T PRK08960 264 YISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAF------------G 330 (387)
T ss_pred ccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEecccc------------C
Confidence 456688888887777641 1123333333333444444545444444332 2344566777765310 1
Q ss_pred HHHHHHHHHHH-HcCeeecCCCC-------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 319 TKFARFYRGML-EEGVYFAPSQF-------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 319 ~~~~~~~~~l~-~~Gi~~~~~~~-------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+..++++.|+ ++||.+.|+.. .++|+++..+.+++.+++++|++++.
T Consensus 331 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 331 GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 22467888876 57999998721 24567777788899999999988764
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=218.92 Aligned_cols=314 Identities=18% Similarity=0.110 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++++++.+........+.+.....+|++.+++++ + +++++++|+|+++++..++.++ ..+++.|++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~--~~~gd~vlv~~p 121 (384)
T PRK06348 44 DESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSI--LDPGDEVIIHEP 121 (384)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCC
Confidence 355666555544432222233344456777777665 2 5789999999999999998766 346789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|.+....+... |..+...+....+++. .|++++++.++. ++++++++..+|++|.++ +.+.+
T Consensus 122 ~y~~~~~~~~~~-g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~l~~p~NPtG~~~-s~~~~ 184 (384)
T PRK06348 122 YFTPYKDQIEMV-GGKPIILETYEEDGFQ------------INVKKLEALITS---KTKAIILNSPNNPTGAVF-SKETL 184 (384)
T ss_pred CCcchHHHHHHc-CCEEEEecCCcCcCCc------------CCHHHHHHhhCc---CccEEEEeCCCCCCCcCC-CHHHH
Confidence 988765444433 3332221111111210 178999998863 455555554445566655 45559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
++|.++|++||+++|+||+|.++ ..+........ +....+.||||.++ +|+|+||+++++++++.+.. ...
T Consensus 185 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~---~~~ 261 (384)
T PRK06348 185 EEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKI---INE 261 (384)
T ss_pred HHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHH---HHH
Confidence 99999999999999999999988 43322111111 12233569999999 89999999999988887762 223
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccch
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGT----YEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
..+++.+.+++.++..+++.. +.+ .+.++++++.+++.|.+ .+ .....+..+.++|+.+..
T Consensus 262 ~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~~~~~~L~~----~~~~~~~~p~gg~~~~~~~~~-------- 327 (384)
T PRK06348 262 GICFSAPTISQRAAIYALKHR--DTIVPLIKEEFQKRLEYAYKRIES----IPNLSLHPPKGSIYAFINIKK-------- 327 (384)
T ss_pred hccCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHhc----CCCceeccCCeeEEEEEeccc--------
Confidence 345677888888887777521 223 33344444444444433 32 222223345566776521
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
...+..+++..|+ ++||.+.|+.. ..+|+++..+++++++++++|++.
T Consensus 328 ----~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 328 ----TGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred ----CCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 1123577888887 46999998742 346677778899999999998764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=218.58 Aligned_cols=312 Identities=14% Similarity=0.094 Sum_probs=209.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|++++++.+.+.....| +.....+|++.++++++ +++++++++|+++++..++.++. .+++.|++.+++|...
T Consensus 46 ~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~--~~gd~vlv~~p~y~~~ 121 (369)
T PRK08153 46 PSPSVIAAMREAAAEIWKY--GDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV--EPGDPVVTSLGAYPTF 121 (369)
T ss_pred CCHHHHHHHHHHHHHhhcC--CCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEECCCcchHH
Confidence 6778999998876543333 33347899999999997 77899999999999999887652 4678899988888776
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
...+.. .|..+...++ .... .|++++++.+.. ++++++++...+|++|.+.+.++ ++++++
T Consensus 122 ~~~~~~-~g~~~~~vp~--~~~~-------------~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~~~~~-l~~l~~ 182 (369)
T PRK08153 122 NYHVAG-FGGRLVTVPY--RDDR-------------EDLDALLDAARR--ENAPLVYLANPDNPMGSWHPAAD-IVAFIE 182 (369)
T ss_pred HHHHHH-cCCeEEEeeC--CCCC-------------CCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCCCHHH-HHHHHH
Confidence 433332 2332222111 1111 167887766653 24555555333444566665444 888888
Q ss_pred HHHHhCCEEEEehhhhch-hcccCccccc-cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 169 ITKENGALLIFDEVMTGF-RLAYGGAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~-~~g~~~~~~~-~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|+ ++++||+||+|.++ ..+....... ......+.||||.++ +|+|+||+++++++++.+.... .+++.++
T Consensus 183 ~~~-~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~-----~~~~~s~ 256 (369)
T PRK08153 183 ALP-ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVR-----NHFGMNR 256 (369)
T ss_pred hCC-CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhh-----cCCCCCH
Confidence 777 49999999999887 4332211111 111122569999999 8999999999999988876422 3457889
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
+++.++.++++ ++++.++.++..+..++.+.+.+...+.. ..+..++++++.+.. +...+.++.
T Consensus 257 ~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~~-~~p~~~~f~~~~~~~------------~~~~a~~l~ 320 (369)
T PRK08153 257 IAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGLT-PLPSATNFVAIDCGR------------DGAFARAVL 320 (369)
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cCCCcCcEEEEECCC------------CcccHHHHH
Confidence 99999888875 44566666766667777776666555543 234556666665421 123457899
Q ss_pred HHHHHcCeeec-CCC---CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 326 RGMLEEGVYFA-PSQ---FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 326 ~~l~~~Gi~~~-~~~---~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.|+++||.++ ++. ..++|+++. +++++++++++|++++..
T Consensus 321 ~~l~~~Gi~v~~p~~~~~~~~iRis~~-~~~~~~~~~~al~~~~~~ 365 (369)
T PRK08153 321 DGLIARDIFVRMPGVAPLDRCIRVSCG-PDEELDLFAEALPEALEA 365 (369)
T ss_pred HHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 99999999996 442 234566655 789999999999998753
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=218.24 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=207.7
Q ss_pred ceeccC-CCcHHHHHHHHHHHHcCC--CCC-----CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH--h
Q 017633 3 QLIILF-PSYLQVLAALGETMKKGT--SFG-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA--F 72 (368)
Q Consensus 3 ~~~~~g-~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~--~ 72 (368)
+.+++| |++|+|++++.+++++.. .++ ...+...++++.+++.++. ..++.+||++|++.+++++.. .
T Consensus 53 s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~~ 130 (402)
T PRK07505 53 SCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGHL 130 (402)
T ss_pred cCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhccc
Confidence 457888 999999999999998631 211 2356789999999999865 556566899999999987643 1
Q ss_pred c-CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 73 T-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 73 ~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+ ++..+|+++.+||++..... .... .+.+++.+|++|+++++++++. +...+++++|+++
T Consensus 131 ~~~~~~vi~~~~~~H~s~~~~~----------------~~~~-~~~~v~~~~~~d~~~l~~~~~~--~~~~~vl~~p~~~ 191 (402)
T PRK07505 131 TGGVPPHMVFDKNAHASLNILK----------------GICA-DETEVETIDHNDLDALEDICKT--NKTVAYVADGVYS 191 (402)
T ss_pred CCCCCCEEEEchhhhHhHHhhh----------------hhhh-cCCeEEEeCCCCHHHHHHHHhc--CCCEEEEEecccc
Confidence 2 34568888999998431100 0000 1134666777899999999864 2567888889876
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhh--hch-hcccCccccccCC-Ccchh----hhhhhccCCccceeeee-h
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM--TGF-RLAYGGAQEYFGV-TPDLT----TLGKIIGGGLPVGAYGG-R 222 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~--~~~-~~g~~~~~~~~~~-~~di~----s~sK~~~~G~~iG~v~~-~ 222 (368)
+ |.+.+ +++|.++|++||++||+||+| .++ +.|..+..+.++. .+|.. |+||+++++ .|+++. +
T Consensus 192 ~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~ 264 (402)
T PRK07505 192 M-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGD 264 (402)
T ss_pred c-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCC
Confidence 6 55677 899999999999999999999 344 4555444556665 56643 899999843 377754 7
Q ss_pred HHHHHHhcCCCCccccccCC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceE-E
Q 017633 223 RDIMEMVAPAGPMYQAGTLS--GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF-G 299 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~ 299 (368)
+++++.+.... +..+++ .++++++++.++++.+.++.+.+ +.+++++++........ ....+.+.++ +
T Consensus 265 ~~~~~~~~~~~---~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~----~~~~l~~~~~~~~~~~~--~~~~g~~~~i~~ 335 (402)
T PRK07505 265 AEQIELILRYA---GPLAFSQSLNVAALGAILASAEIHLSEELDQ----LQQKLQNNIALFDSLIP--TEQSGSFLPIRL 335 (402)
T ss_pred HHHHHHHHHhC---CCceeCCCCCHHHHHHHHHHHHHHhccCcHH----HHHHHHHHHHHHHHHHH--hcCCCCCCCEEE
Confidence 78888776322 233333 45678888888888665444332 22333333322111000 0112222222 2
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+ ++.....++.+.|+++||.+++... ..+| +++.++++|+++++++|++++.+
T Consensus 336 ~~~-------------~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 336 IYI-------------GDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred EEe-------------CCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 222 1223457899999999999987521 2334 45668999999999999998754
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=216.67 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=202.4
Q ss_pred CcHHHHHHHHHHHHcC--CCCCCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+++++.+.+... ...+|+.....+|++.+++++ + ++++|++|+|+++++..++.++. .+++.|++
T Consensus 40 ~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~--~~gd~v~v 117 (368)
T PRK03317 40 PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFG--GPGRTALG 117 (368)
T ss_pred CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhc--CCCCEEEE
Confidence 7778999998876531 123345555678888888887 2 57899999999999999997663 46788999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|+.+..... ..+..+.. ++..++.. -|+++++++++++ ++++++++..+|++|.+.+
T Consensus 118 ~~P~y~~~~~~~~-~~g~~~~~--~~~~~~~~------------~d~~~l~~~~~~~--~~~~i~l~~p~NPtG~~~~-- 178 (368)
T PRK03317 118 FVPSYSMHPIIAR-GTHTEWVE--GPRAADFT------------LDVDAAVAAIAEH--RPDVVFLTSPNNPTGTALP-- 178 (368)
T ss_pred eCCChHHHHHHHH-hcCCeeEE--cccCCCCC------------CCHHHHHHHHhcc--CCCEEEEeCCCCCCCCCCC--
Confidence 9999987654332 22222211 11111110 1789999998743 4455555555666788887
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchh---hhhhhcc-CCccceeeeehHHHHHHhcCCCCc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~---s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
.+++.++++.+++++|+||+|.+| +.+........+..++++ ||||.++ +|+|+||+++++++++.+....
T Consensus 179 --~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~-- 254 (368)
T PRK03317 179 --LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR-- 254 (368)
T ss_pred --HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcC--
Confidence 667777777778999999999988 444332233333334443 9999998 8999999999999998887422
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE-EeecCCCcccchhc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF-FFTEGPVYNFEDAK 314 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (368)
.+++.++++++++.++++.. +.+.++.+ ..+..++.+.+.+...+.. ...+.++++.+ .+
T Consensus 255 ---~~~~~s~~~~~a~~~~l~~~--~~~~~~~~-~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~------------ 315 (368)
T PRK03317 255 ---LPYHLSAVTQAAARAALRHA--DELLASVA-ALRAERDRVVAWLRELGLR-VAPSDANFVLFGRF------------ 315 (368)
T ss_pred ---CCCCCCHHHHHHHHHHhhCH--HHHHHHHH-HHHHHHHHHHHHHHHCCCE-eCCCCCcEEEEecc------------
Confidence 35677889999888887632 22222221 1222333344444444432 22233444333 21
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCC-CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+..++.+.|+++||.+.+.+. .++|+++. +.+++++++++|++++.
T Consensus 316 ----~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~-~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 316 ----ADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG-TPEENDAFLAALAEVLA 363 (368)
T ss_pred ----CCHHHHHHHHHHCCEEEEeCCCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 1246789999999999998653 44566644 67889999999998874
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=218.47 Aligned_cols=317 Identities=14% Similarity=0.086 Sum_probs=200.4
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+++++.+.+...... +.+.....+|++++++++ + +.+ .+++|+|+++++..++..+ ..++|.|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~--~~~gd~Vl~ 122 (385)
T PRK09276 45 TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAF--VNPGDVVLV 122 (385)
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh--CCCCCEEEE
Confidence 4567888888877643222 222334566777777665 3 344 5888999999999998766 356789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++|......+. ..|.++...+.....++. .|++++++.+. ++++++++++.+|++|.+++ .
T Consensus 123 ~~P~y~~~~~~~~-~~g~~~~~v~~~~~~g~~------------~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~-~ 185 (385)
T PRK09276 123 PDPGYPVYKIGTI-FAGGEPYFMPLKEENGFL------------PDLDAIPEDVA---KKAKLMFINYPNNPTGAVAD-L 185 (385)
T ss_pred cCCCCcChHHHHH-HcCCEEEEEecCCCCCCc------------CCHHHHHHhcc---ccceEEEEeCCCCCCCCCCC-H
Confidence 9999987644333 334433322221111211 17888888776 35666666644555676655 4
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc---cc-cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~---~~-~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+.+++|+++|++||+++|+||+|.++ ..+.. ... +. .+....+.||||.++ +|+|+||+++++++++.+....
T Consensus 186 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~ 265 (385)
T PRK09276 186 EFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVK 265 (385)
T ss_pred HHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHH
Confidence 44999999999999999999999877 43321 111 11 123345679999998 8999999999999888876322
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+.+.+.+.++..+++. .+.+.++.++..+..++.+.+.+.+.+.....+..+.++|+.+.
T Consensus 266 ---~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~---------- 330 (385)
T PRK09276 266 ---SNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVP---------- 330 (385)
T ss_pred ---hhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECC----------
Confidence 122234566677776666641 13344444444444444454444444433222334455677652
Q ss_pred cccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
+..+..++++.|+ ++||.+.++. ..++|+++..+++++.+++++|.+
T Consensus 331 ---~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 331 ---KGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred ---CCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 2223577888887 4799999973 234677777888889888888864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=216.07 Aligned_cols=322 Identities=15% Similarity=0.106 Sum_probs=205.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+.+++.+.+......+.+.....++++.+++++ + ..++|++|+|+++++..++..+ ..+++.|++.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~--~~~gd~vl~~~ 122 (391)
T PRK07309 45 PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI--LEPGDKVLLPA 122 (391)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCEEEEeC
Confidence 566888888877653222334444566777777755 2 1368999999999999998765 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|.+.. ......|.++............ |++++++++++..++++++++...+|++|.+.+.++
T Consensus 123 p~y~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~- 187 (391)
T PRK07309 123 PAYPGYE-PIVNLVGAEIVEIDTTENDFVL-------------TPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQ- 187 (391)
T ss_pred CCCcchH-HHHHHcCCEEEEEecCCcCCcC-------------CHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHH-
Confidence 9988864 3334444433221111100011 789999998764346777776644555676665554
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc--CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF--GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~--~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
+++|+++|++||+++|+||+|.++ ..+.. ...... +....+.||||.++ +|+|+||+++++++++.+... ..
T Consensus 188 ~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~---~~ 264 (391)
T PRK07309 188 IKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKS---HQ 264 (391)
T ss_pred HHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHH---Hh
Confidence 999999999999999999999887 43322 121111 22233568999998 899999999999988887632 12
Q ss_pred cccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
....+++.+++.++...++.... ..+.+.+.++++.+.+.|+ +.+.....+..+.++|+.+...
T Consensus 265 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~p~gg~~~~~~l~~~---------- 330 (391)
T PRK07309 265 YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMT----DLGFKIIKPDGAFYIFAKIPAG---------- 330 (391)
T ss_pred hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH----HCCCeecCCCeeEEEEEECCCC----------
Confidence 23346677888887766652110 1123344444444444443 3443323333455566655211
Q ss_pred cccHHHHHHHHHH-HHcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l-~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.+ .++||.+.|+. ..++|+++..+.+++++++++|++++++
T Consensus 331 -~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 331 -YNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEE 388 (391)
T ss_pred -CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 011246778765 46899999874 2345777777889999999999999865
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=227.25 Aligned_cols=324 Identities=10% Similarity=0.026 Sum_probs=198.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++++++++.+++..... |.+.....+|++++++++ + .+++|++++|+++++..++..+ ..++|.|++..
T Consensus 163 ~p~~~~~~~~~~~~~~~~-Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l--~~~Gd~Vli~~ 239 (517)
T PRK13355 163 TPDEVVYDMAQQLTDTEG-YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSAL--LDDGDEVLIPS 239 (517)
T ss_pred CCHHHHHHHHHHhhcCCC-CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHh--CCCCCEEEEcC
Confidence 356788888887765333 334455788888888877 3 5789999999999999998766 35788999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..+..... ..|..+.........++. .|+++++++++ ++++++++...+|++|.+.+ .+.
T Consensus 240 P~y~~y~~~~~-~~g~~~v~~~~~~~~~~~------------~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~-~~~ 302 (517)
T PRK13355 240 PDYPLWTACVN-LAGGTAVHYRCDEQSEWY------------PDIDDIRSKIT---SRTKAIVIINPNNPTGALYP-REV 302 (517)
T ss_pred CCCcCHHHHHH-HCCCEEEEeecCcccCCC------------CCHHHHHHhcC---cCceEEEEECCCCCCCcCcC-HHH
Confidence 99987654433 333332221111111111 18999999886 35565544444555676665 555
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc--CC-Ccchhhhhhhcc-CCccceeeee--hHHH----HHHhc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF--GV-TPDLTTLGKIIG-GGLPVGAYGG--RRDI----MEMVA 230 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~--~~-~~di~s~sK~~~-~G~~iG~v~~--~~~~----~~~~~ 230 (368)
+++|+++|++||++||+||+|.+| +.+.. .....+ +. ...+.||||.++ +|||+||+++ ++++ ++.+.
T Consensus 303 l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~ 382 (517)
T PRK13355 303 LQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLN 382 (517)
T ss_pred HHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHH
Confidence 999999999999999999999888 44421 111111 11 112358999998 8999999984 3433 33332
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
. .....++.+.+++.++.++++.... +.+.+..++..+ .++.+.+.+.+. ++....+..++++|+.+.....
T Consensus 383 ~----~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~-~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~- 456 (517)
T PRK13355 383 M----LANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYE-QRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF- 456 (517)
T ss_pred H----HhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccC-
Confidence 1 1112345677888888777741100 112222111111 233344444444 3322333334455555532100
Q ss_pred ccchhcccccHHHHHHH-HHHHHcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 309 NFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..+++ +.|.++||.+.|+. ..++|+++..+++++++++++|++++.+
T Consensus 457 --------~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 457 --------NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred --------CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 001124444 55677899999873 2346788888999999999999999864
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=216.16 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=197.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCh----hHHHHHHHHHhhCC-C---CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCL----LENVLAEMVISAVP-S---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~-~---~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+.+++.+.+......+.+.. +.+++++++++.++ . .+++++|+|+++++..++... ..++|.|++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l--~~~gd~Vlv~ 120 (384)
T PRK12414 43 PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL--VHPGDEVIYF 120 (384)
T ss_pred CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh--cCCCCEEEEe
Confidence 367788888877664322222333 34444444445455 2 257999999999999988765 3577899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|...... ....|..+............ |++++++.++ +++++++++..+|++|.++++ +
T Consensus 121 ~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~l~---~~~~~v~i~~p~NPTG~~~s~-~ 182 (384)
T PRK12414 121 EPSFDSYAPI-VRLQGATPVAIKLSPEDFRV-------------NWDEVAAAIT---PRTRMIIVNTPHNPSATVFSA-A 182 (384)
T ss_pred CCCccchHHH-HHHcCCEEEEEecCcccccc-------------CHHHHHhhcC---cccEEEEEcCCCCCCCcCCCH-H
Confidence 9998764333 33334332221111111111 7899998886 356767666555667776654 4
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCc-ccc-ccC---CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQE-YFG---VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~-~~~---~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+++|+++|++||+++|+||+|.++ ..+... ... ..+ ....+.||||.++ +|+|+||+++++++++.+..
T Consensus 183 ~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~--- 259 (384)
T PRK12414 183 DLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRK--- 259 (384)
T ss_pred HHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHH---
Confidence 4999999999999999999999887 443221 111 111 2234568999998 89999999999998887763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.....+++.+.+++.++...++ +.. ..+.++++++.+.+.|++ .+.....+..+.++|+.+....
T Consensus 260 ~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~~~~~~gg~~~~~~~~~~~---- 328 (384)
T PRK12414 260 VHQFMVFSADTPMQHAFAEALA---EPASYLGLGAFYQRKRDLLARELAG----SRFELLPSEGSFFMLARFRHFS---- 328 (384)
T ss_pred HHhheecCCCcHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHh----CCCeecCCCcceEEEEcccccC----
Confidence 2233456778888888776664 222 234444555544444444 3432222334456565553110
Q ss_pred chhcccccHHHHHHH-HHHHHcCeeecCCC--------CCccccccCCCHHHHHHHHHHHHH
Q 017633 311 EDAKKSETTKFARFY-RGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~--------~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
+. ...+++ +.|.++||.+.|+. .+++|+++..+++++++++++|.+
T Consensus 329 ------~~-~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 329 ------DE-SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred ------CC-CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 11 124555 55667899999973 234677777889999999999875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=216.19 Aligned_cols=320 Identities=15% Similarity=0.065 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+++++.+.+.+....+.+.....+|++.+++++ + +++ ++++|+|+++|+..++... ..+++.|++..
T Consensus 43 ~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l--~~~gd~Vl~~~ 120 (387)
T PRK07683 43 PSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTI--LEPGTEVILPA 120 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh--CCCCCEEEEcC
Confidence 467889998888753222334455667777777765 2 355 8999999999999998765 34678899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
+.|.++.... ...|..+...... ..++. .|.+++++.++. +++++++...+|++|.++++.+
T Consensus 121 p~y~~~~~~~-~~~g~~~~~~~~~-~~~~~------------~~~~~l~~~~~~---~~~~i~i~~p~NPtG~~~s~~~- 182 (387)
T PRK07683 121 PIYPGYEPII-RLCGAKPVFIDTR-STGFR------------LTAEALENAITE---KTRCVVLPYPSNPTGVTLSKEE- 182 (387)
T ss_pred CCccchHHHH-HHcCCEEEEeecC-cccCC------------CCHHHHHHhcCc---CceEEEEeCCCCCCCcCCCHHH-
Confidence 8888764443 3334433221111 11110 067888888863 4566666555555676665444
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
+++|+++|+++|+++|+||+|.++ ..+.......+ +....+.||||.++ +|+|+||+++++++++.+... .
T Consensus 183 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~---~ 259 (387)
T PRK07683 183 LQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKV---H 259 (387)
T ss_pred HHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHH---H
Confidence 999999999999999999999887 43322121111 12233568999999 999999999999988887632 1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.....+.+.+++.++...++.. +.+.++.++..+..++.+.+.+...+.....+..+.++|..+...
T Consensus 260 ~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------- 326 (387)
T PRK07683 260 QYNVTCASSISQYAALEALTAG--KDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFPSIGHF----------- 326 (387)
T ss_pred HhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEEEEecccC-----------
Confidence 2223345677777776666421 222333333333333333333333343222233344555443210
Q ss_pred ccHHHHHHHHHH-HHcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l-~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..+++..+ .++||.+.++. ..++|+++..+++++.+++++|.+++.+
T Consensus 327 -~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 327 -TMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred -CCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 11235677664 56799999974 2346777777899999999999998753
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=213.12 Aligned_cols=317 Identities=15% Similarity=0.099 Sum_probs=202.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhc-CCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFT-GRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~-~~~~vi~ 80 (368)
.+|++++++.+.......|. ......+|++.+++++ + +.+ +|++|+|+++++..++..+.... ++|.|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~ 92 (350)
T TIGR03537 14 TPPFIRKALIDAVPEVSQYP-SALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF 92 (350)
T ss_pred CCHHHHHHHHHHHhccCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE
Confidence 46789999888765433332 2334567777777664 3 355 89999999999998887653311 1268999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|..+...+. ..|.++.........++. -|++++++++.+ +++++++++.+|++|.+.+ .
T Consensus 93 ~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~---~~~~i~i~~p~NPtG~~~~-~ 155 (350)
T TIGR03537 93 GTPGYPVYERGAL-FAGGEPTAVKLKKEDGFL------------LRLEKVEKSILE---ETKIVWINYPHNPTGATAP-R 155 (350)
T ss_pred cCCCCcchHHHHH-hcCCEEEEcccCcccCCc------------cCHHHHHHhhhh---ccEEEEEeCCCCCcCcccC-H
Confidence 9999987755443 344433322221111210 179999998873 5676766665566676555 4
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccC--CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~--~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
+.+++|+++|++||+++|+||+|..+ ..+........+ ...-+.||||.++ +|+|+||+++++++.+.+....
T Consensus 156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~--- 232 (350)
T TIGR03537 156 SYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLR--- 232 (350)
T ss_pred HHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHH---
Confidence 44999999999999999999999876 322221111111 2233458999997 8999999999988888776321
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
...+.+.+.+++.++.+++. .+++.++.+++.+..++.+.+.+...+.....+..+.++|+.+.
T Consensus 233 ~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~------------- 296 (350)
T TIGR03537 233 ANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVP------------- 296 (350)
T ss_pred HhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECC-------------
Confidence 22233455566666665553 34444444444444444555544444443233334556677652
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHH
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
......++++.|.++||.+.++.. .++|+++..+++++++++++|++
T Consensus 297 ~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 297 SGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred CCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 222347899999999999998632 33567766788999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=213.52 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=203.7
Q ss_pred CcHHHHHHHHHHHHcCCC--CCC---CChhHHHHHHHHHhhCC---C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTS--FGA---PCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~--~~~---~~~~~~~l~~~l~~~~~---~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+++++.+.+..... |.. ..+....+++.+++.++ + .+++++++|+++++..++..+ ..++|.|++
T Consensus 41 ~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~--~~~gd~Vlv 118 (389)
T PRK05957 41 PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI--TDPGDEIIL 118 (389)
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCEEEE
Confidence 456788999887765322 221 12455666677766655 2 568999999999998888655 246788999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++.|..+.. .....|..+.........++ |++++++.++ ++++++++.+.+|++|.+.+..
T Consensus 119 ~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~klv~~~~p~NPtG~~~~~~ 180 (389)
T PRK05957 119 NTPYYFNHEM-AITMAGCQPILVPTDDNYQL--------------QPEAIEQAIT---PKTRAIVTISPNNPTGVVYPEA 180 (389)
T ss_pred eCCCCcCHHH-HHHhcCCEEEEeecCCCCCc--------------CHHHHHHhcC---cCceEEEEeCCCCCCCcCcCHH
Confidence 8888866533 23333443322211111111 7999999886 3566666666666677766655
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc----cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ----EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~----~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+ +++|+++|++||+++|+||+|.++ ..+.. ... +.......+.||||.++ +|+|+||+++++++++.+...
T Consensus 181 ~-~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~- 258 (389)
T PRK05957 181 L-LRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKI- 258 (389)
T ss_pred H-HHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHH-
Confidence 5 999999999999999999999887 43221 111 11112344679999998 899999999999998888732
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEeeccceEEEEeecCCCcccc
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH--AICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
......+.+.+++.++..+++. .+++.++..+..+..++.+.+.+...+. ....+..+.++|+.+.
T Consensus 259 --~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~-------- 326 (389)
T PRK05957 259 --QDTILICPPVVSQYAALGALQV--GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVN-------- 326 (389)
T ss_pred --HhhcccCCCcHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCC--------
Confidence 2222334566777777666641 1223333333333334444444433321 2122333556677652
Q ss_pred hhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+ ++||.+.|+.. .++|+++. .+++++++++++|.+.+.+
T Consensus 327 -----~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 327 -----TDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred -----CCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 1223578999987 57999999742 24667664 5889999999999988764
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=216.51 Aligned_cols=324 Identities=14% Similarity=0.069 Sum_probs=206.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++.+++++.+.+......+.+.....+|++.+++++ + +++++++|+|+++++..++..+ ..+++.|++.++
T Consensus 48 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~~g~~Vlv~~p 125 (391)
T PRK08361 48 PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESL--LEEGDEVIIPDP 125 (391)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHh--cCCCCEEEEcCC
Confidence 456788888776653333335556678888888765 2 4689999999999999988765 346788999998
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|..... .....|..+...+.....+.. .|++++++.++. +++++++...+|++|.+++ .+.+
T Consensus 126 ~y~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~i~~---~~~~v~i~~p~NPtG~~~~-~~~~ 188 (391)
T PRK08361 126 AFVCYVE-DAKIAEAKPIRIPLREENEFQ------------PDPDELLELITK---RTRMIVINYPNNPTGATLD-KEVA 188 (391)
T ss_pred CCcccHH-HHHHcCCEEEEEecCCccCCC------------CCHHHHHHhccc---ccEEEEEeCCCCCCCcCcC-HHHH
Confidence 8877543 333444433322221111110 189999998873 4565655544555676665 4459
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc--CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF--GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~--~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
++|+++|+++++++|+||+|.++ ..+.. ...... ....-+.||||.++ +|+|+||+++++++++.+.. ....
T Consensus 189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~---~~~~ 265 (391)
T PRK08361 189 KAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIK---LHAY 265 (391)
T ss_pred HHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHH---HHhh
Confidence 99999999999999999999877 43321 111111 12223458999999 89999999999888877652 1122
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+++.+.+.+.++..+++.-...++.++.++..+..++.+.+.+... +.....+..+.++|+.+.. .
T Consensus 266 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~------------~ 333 (391)
T PRK08361 266 IIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDE------------T 333 (391)
T ss_pred hccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCC------------C
Confidence 34466777777776666421111233444444444444444444443 2222222334566766531 1
Q ss_pred cHHHHHHHHHHHH-cCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 318 TTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 318 ~~~~~~~~~~l~~-~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..+..++++.|++ +||.+.|+. ..++|+++..+++++++++++|+++++++
T Consensus 334 ~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~~ 391 (391)
T PRK08361 334 GMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEEL 391 (391)
T ss_pred CCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhcC
Confidence 1234678888875 799999863 13467777788999999999999998764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=216.13 Aligned_cols=327 Identities=15% Similarity=0.107 Sum_probs=203.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+.+++.+.+......+| +.....+|++.+++++ + ..+ ++++|+|+++++..++.+.. .++|.|++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--~~gd~Vlv 124 (403)
T PRK08636 47 TPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT--NPGDVAIV 124 (403)
T ss_pred CCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC--CCCCEEEE
Confidence 345677777776654222222 3345556666666654 3 345 79999999999999997663 46889999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHH----HHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----ALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.+++|.+....+.. .|.++...+.....+. .+ |++ .++++++++..++++++++..+|++|.+
T Consensus 125 ~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~---------~~---d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~ 191 (403)
T PRK08636 125 PDPAYPIHSQAFIL-AGGNVHKMPLEYNEDF---------EL---DEDQFFENLEKALRESSPKPKYVVVNFPHNPTTAT 191 (403)
T ss_pred cCCCCcchHHHHHh-cCCEEEEEeccccccC---------cc---ChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCcc
Confidence 99999886544333 3443322111111110 01 444 5677776544466666666445556665
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHh
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~ 229 (368)
++.++ +++|+++|++|++++|+||+|.++ ..+.. .....+ +....+.||||.++ +|+|+||+++++++++.+
T Consensus 192 ~s~~~-~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~ 270 (403)
T PRK08636 192 VEKSF-YERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGAL 270 (403)
T ss_pred CCHHH-HHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHH
Confidence 55555 999999999999999999999887 44321 111111 12233568999997 899999999999988877
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
... .....++.+.+++.++..+++. .+.+.+++++..+..++.+.+.+...+.....+..|.++|+.+....
T Consensus 271 ~~~---~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~--- 342 (403)
T PRK08636 271 KKI---KSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPA--- 342 (403)
T ss_pred HHH---HHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCcc---
Confidence 631 1222345556666665544431 12344444444344444444444444433233456778888763210
Q ss_pred cchhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 310 FEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..+++..++ ++||.+.|+. ..++|+++..+++++++++++|++++..
T Consensus 343 -------~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 343 -------RHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKE 400 (403)
T ss_pred -------CCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 0112467887755 6799999973 2346777778999999999999998864
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=216.32 Aligned_cols=317 Identities=15% Similarity=0.095 Sum_probs=201.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+.+++.+.+.......| +.....+|++.+++++ + ..+ ++++|+|+++++..++.++ ..++|.|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~--~~~gd~vlv 120 (383)
T TIGR03540 43 TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF--VNPGDIVLV 120 (383)
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh--CCCCCEEEE
Confidence 355688888887654322222 2334566777766654 2 234 6899999999999998766 356789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++|...... ....|.++...+.....++. -|++++++.+. ++++++++++.+|++|.+++ .
T Consensus 121 ~~P~y~~~~~~-~~~~G~~v~~v~~~~~~g~~------------~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~~-~ 183 (383)
T TIGR03540 121 PDPGYPVYRIG-TLFAGGEPYEMPLKEENGFL------------PDFDAIPEDIA---KKAKLMFINYPNNPTGAVAP-L 183 (383)
T ss_pred eCCCCcchHHH-HHhcCCEEEEEecCcccCCc------------cCHHHHHhhcc---ccceEEEEeCCCCCcCccCC-H
Confidence 99999876544 33344433322221111211 17888888876 35666666644555666554 5
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+.+++|+++|++||+++|+||+|.++ ..+. ...... ......+.||||.++ +|+|+||+++++++++.+....
T Consensus 184 ~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~ 263 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVK 263 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHH
Confidence 55999999999999999999999877 4331 111111 122344679999998 8999999999999888776322
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+.+.+.+.++..+++.. +.+.+.+++..+..++.+.+.+.+.+.....+..+.++|+.+.
T Consensus 264 ---~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~---------- 328 (383)
T TIGR03540 264 ---TNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVP---------- 328 (383)
T ss_pred ---HhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECC----------
Confidence 2223345667777766666421 3344444444444444455544445543233334556777762
Q ss_pred cccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
+..+..++++.|+ ++||.+.++. ...+|+++..+++++.+++++|++
T Consensus 329 ---~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 329 ---EGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred ---CCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 2223578888876 6799999873 234677777888889998888864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=216.17 Aligned_cols=323 Identities=17% Similarity=0.139 Sum_probs=203.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+.+++.+.+......+.+.....+|++.+++++ + .++ ++++|+|+++++..++... ..+++.|++.
T Consensus 40 ~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~--~~~gd~Vlv~ 117 (387)
T PRK08912 40 GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLAL--VEPGDEVVLF 117 (387)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHh--cCCCCEEEEe
Confidence 4567888887776543222223344566666666654 2 355 8999999999998888655 2467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|...... ....|..+...+........ |++++++.+. ++++++++...+|++|.+.+.++
T Consensus 118 ~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~-------------~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~ 180 (387)
T PRK08912 118 QPLYDAYLPL-IRRAGGVPRLVRLEPPHWRL-------------PRAALAAAFS---PRTKAVLLNNPLNPAGKVFPREE 180 (387)
T ss_pred CCCchhhHHH-HHHcCCEEEEEecCcccCcC-------------CHHHHHHHhC---ccceEEEEeCCCCCcCcccCHHH
Confidence 9888765433 33444433222221111111 7899998886 35565655544555676666544
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-cc-cccc---CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~-~~~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++|++++|+||+|.++ ..+.. .. .... +....+.||||.++ +|+|+||+++++++++.+...
T Consensus 181 -~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~-- 257 (387)
T PRK08912 181 -LALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKA-- 257 (387)
T ss_pred -HHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHH--
Confidence 999999999999999999999877 43321 11 1111 12234568999999 999999999999988877632
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....++.++..+.++..++. ..+++.+..++..+..++.+.+.+...+.....+..+.++|+.+....
T Consensus 258 -~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~-------- 326 (387)
T PRK08912 258 -HQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLG-------- 326 (387)
T ss_pred -HhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccC--------
Confidence 122335556666666665553 123333344444444444444444444433223334556777663210
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCCC--------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQF--------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~~--------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+ ++||.+.++.. .++|+++..+++++++++++|++++.+
T Consensus 327 --~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 327 --LAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred --CCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 0123577888886 57999998632 346777777899999999999998764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=216.27 Aligned_cols=318 Identities=14% Similarity=0.103 Sum_probs=204.3
Q ss_pred CcHHHHHHHHHHHHcCC-CCCCCChhHHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 10 SYLQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+|.+++++.+.+.... ...|+.....+|+++++++++ ++++|++|+|+++++..++.... .++++.|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~-~~g~~~Vl 120 (374)
T PRK02610 42 LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC-LGGEGSIL 120 (374)
T ss_pred CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc-CCCCCeEE
Confidence 66789999988776532 123455667889999988874 35789999999999987765432 23334799
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCCCcccC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 158 (368)
+..++|..+...+ ...|..+...........+ |++++++++++. .++++++++.+.+|++|.+++
T Consensus 121 v~~P~y~~~~~~~-~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s 186 (374)
T PRK02610 121 VAEPTFSMYGILA-QTLGIPVVRVGRDPETFEI-------------DLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT 186 (374)
T ss_pred EcCCChHHHHHHH-HHcCCEEEEecCCcccCCC-------------CHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC
Confidence 9999987764433 3334433222211111111 799999988741 125676666555666777666
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
.++ ++++.++| +++++|+||+|.+| ...............-+.||||.++ +|+|+||+++++++++.+....
T Consensus 187 ~~~-l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~--- 260 (374)
T PRK02610 187 AAE-LEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR--- 260 (374)
T ss_pred HHH-HHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc---
Confidence 554 88888887 49999999999887 3211111111111223569999997 8999999999999988887422
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
..++.+.+++.++..+++.. +.+.+.+++..+. ++.+.+.+...+.....+..++++|+.+.
T Consensus 261 --~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g~f~~~~l~------------- 322 (374)
T PRK02610 261 --LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPSAANFLYLRLS------------- 322 (374)
T ss_pred --CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcceEEEEeCC-------------
Confidence 23456788888877666521 2333343433333 44444444444222233556677777652
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|.++||.++++. ..+|+++.. .+++++++++|++++..+
T Consensus 323 ~~~~~~~~~~~l~~~gi~v~~~~-~~lRls~~~-~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 323 QDAALAALHQALKAQGTLVRHTG-GGLRITIGT-PEENQRTLERLQAALTQL 372 (374)
T ss_pred CCCCHHHHHHHHHHCCEEEEeCC-CeEEEeCCC-HHHHHHHHHHHHHHHhhc
Confidence 22235788899999999998653 456777654 567899999999988653
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=216.51 Aligned_cols=313 Identities=12% Similarity=0.029 Sum_probs=197.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C-C---C-CeEEEeCChHHHHHHHHHHHHHh-cCCceEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P-S---I-EMVRFVNSGTEACMGVLRLARAF-TGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-~---~-~~v~~~~~gt~a~~~al~~~~~~-~~~~~vi 79 (368)
.++.+++++.+.+.....|+ ......+|++.+++++ + . + +++++|+|+++++..++++.... ..++.|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vl 121 (396)
T PRK09147 43 TPAFIKDALAANLDGLASYP-TTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVV 121 (396)
T ss_pred CCHHHHHHHHHHhhhhcCCC-CCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEE
Confidence 35678888877665433332 2233455666666543 4 2 3 48999999999999998866331 1167899
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|....... ...|.++...+.....++. -|++++++.+.. +++++++...+|++|.+++
T Consensus 122 v~~P~y~~~~~~~-~~~g~~~~~vp~~~~~~~~------------~d~~~l~~~~~~---~~k~i~l~nP~NPTG~~~s- 184 (396)
T PRK09147 122 CPNPFYQIYEGAA-LLAGAEPYFLNCDPANNFA------------PDFDAVPAEVWA---RTQLLFVCSPGNPTGAVLP- 184 (396)
T ss_pred EcCCCccchHHHH-HhcCCEEEEeccCccccCc------------cCHHHHHHHHhh---ccEEEEEcCCCCCcCccCC-
Confidence 9999887764443 3334433322221111110 178899887752 5666666544555666555
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hccc--Ccc-c---cc-----cCCCcchhhhhhhcc-CCccceeeeehHHHH
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA-Q---EY-----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 226 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~-~---~~-----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~ 226 (368)
.+.+++|+++|++|+++||+||+|.++ ..+. ... . .. .+....+.||||.++ +|+|+||++++++++
T Consensus 185 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~ 264 (396)
T PRK09147 185 LDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALL 264 (396)
T ss_pred HHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHH
Confidence 555999999999999999999999887 4332 110 1 01 122234569999987 899999999999988
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH----HHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
+.+... ....+++.+.+.+.++.+++. .+.+. +.++++++.+.+.|.+ . .....+..+.++|+++
T Consensus 265 ~~~~~~---~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~----~-~~~~~p~~g~f~~~~~ 333 (396)
T PRK09147 265 KKFLLY---RTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAP----V-LDVQLPDAGFYLWAKV 333 (396)
T ss_pred HHHHHH---hhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHH----h-cCCCCCCeeEEEEEEC
Confidence 877632 122345677788877666653 22333 3334444444444433 2 2223345677888876
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC------------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. ....++++.|+ ++||.+.|+.. .++|+++..+++++++++++|++++.
T Consensus 334 ~---------------~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 334 P---------------GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred C---------------CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 2 11367888876 57999988731 23567777889999999999998874
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=215.91 Aligned_cols=323 Identities=14% Similarity=0.091 Sum_probs=202.7
Q ss_pred cHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 11 YLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
++.+++++.+.+.......| +.....+|++.+++++ + .++ +|++|+|+++++..++.... .++|.|++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~--~~gd~Vl~~ 122 (405)
T PRK09148 45 PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT--APGDVILCP 122 (405)
T ss_pred CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc--CCCCEEEEc
Confidence 56788888777644222222 3344567777777655 3 345 89999999999999987663 467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|......+.. .|..+...+...... .++++++.+..+.+++++++++..+|++|.+++ .+
T Consensus 123 ~P~y~~~~~~~~~-~g~~v~~v~~~~~~~---------------~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s-~~ 185 (405)
T PRK09148 123 NPSYPIHAFGFIM-AGGVIRSVPAEPDEE---------------FFPALERAVRHSIPKPIALIVNYPSNPTAYVAD-LD 185 (405)
T ss_pred CCCCcccHHHHHh-cCCEEEEEeCCCCCC---------------CccCHHHHHhhccccceEEEEeCCCCCCCcCCC-HH
Confidence 9999887544433 333322211110000 234455555543345565555544555666665 44
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCc-ccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+++|.++|++||+++|+||+|.++ ..+... ..... +....+.||||.++ +|+|+||+++++++++.+..
T Consensus 186 ~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~--- 262 (405)
T PRK09148 186 FYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTR--- 262 (405)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHH---
Confidence 4999999999999999999999887 433211 11111 12234579999999 89999999999999888863
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....+++.+.+++.++...++. .+.+.++.++..+..++.+.+.+.+.+.....+..+.++|+.+....
T Consensus 263 ~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~-------- 332 (405)
T PRK09148 263 VKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAF-------- 332 (405)
T ss_pred HHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCcc--------
Confidence 22333456677888887766641 13344444444444444444444444443223445667777753210
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......+++..|+ ++||.+.|+. ..++|+++..+.+++.+++++|.+++.+
T Consensus 333 --~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 333 --RHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSS 390 (405)
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 0112467888776 6899999973 2345677777899999999999988753
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=215.44 Aligned_cols=318 Identities=12% Similarity=0.054 Sum_probs=198.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++++.+++.+.+.....+.| +.....+|++++++++ + .++ .+++|+|+++++..++..+ ..++|.|++
T Consensus 49 ~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~--~~~gd~Vlv 126 (394)
T PRK05942 49 APQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY--VNPGDVVLV 126 (394)
T ss_pred CCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh--CCCCCEEEE
Confidence 345678877776654322222 3344567777777765 3 355 5889999999999998765 357889999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|.+..... ...|..+.........++. -|++++++.+. +++++++++..+|++|.+++.+
T Consensus 127 ~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~s~~ 190 (394)
T PRK05942 127 PSPAYPAHFRGP-LIAGAQIYPIILKPENDWL------------IDLSSIPEEVA---QQAKILYFNYPSNPTTATAPRE 190 (394)
T ss_pred cCCCCcchHHHH-HHcCCEEEEeecCCccCCc------------cCHHHHHHhcc---ccceEEEEcCCCCCCCCcCCHH
Confidence 999998764443 3333333221111111110 17899988886 3677777664455566655544
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cc---cc-ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA---QE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~---~~-~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+ +++|+++|++||+++|+||+|.++ ..+.. .. .. ..+....+.||||.|+ +|+|+||+++++++++.+....
T Consensus 191 ~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~ 269 (394)
T PRK05942 191 F-FEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLK 269 (394)
T ss_pred H-HHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHH
Confidence 4 999999999999999999999877 43321 11 11 1123345679999997 8999999999999988887322
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
....++.+.+++.++..+++.. +.+.++.++..+..++.+.+.+...+.....+..+.++|+.+..
T Consensus 270 ---~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~~~~~~--------- 335 (394)
T PRK05942 270 ---TNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLWVPCPV--------- 335 (394)
T ss_pred ---hhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeeEEEEECCC---------
Confidence 2234456777777777777522 22333333333333444444443344332233344477777631
Q ss_pred cccccHHHHHHHHHH-HHcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGM-LEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l-~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
..+..+++..+ .++||.+.++. ..++|+++..+.+.+.+++++|.++
T Consensus 336 ----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 336 ----GMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred ----CCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 11235666655 47899998863 2345666666677777888777765
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=216.05 Aligned_cols=316 Identities=17% Similarity=0.144 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 13 QVLAALGETMKKG----TSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 13 ~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+.+.+.+.+... ..++.+......|++.+++++ + .+++|++|+|+.+|++++++++ ..++|.|++-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l--~~pGd~v~vE 185 (459)
T COG1167 108 ALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL--LDPGDTVLVE 185 (459)
T ss_pred HHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh--CCCCCEEEEc
Confidence 3555555554331 123344466777777777765 2 4679999999999999988877 3478999999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|++....+ ...|.++...+.. .+++ |+++||+.++++ +++++++.|..+|++....+.+
T Consensus 186 ~PtY~~~~~~~-~~~g~~~~~vp~d-~~G~--------------~~e~le~~~~~~--~~k~~y~~P~~qNPtG~tms~~ 247 (459)
T COG1167 186 DPTYPGALQAL-EALGARVIPVPVD-EDGI--------------DPEALEEALAQW--KPKAVYVTPTFQNPTGVTMSLE 247 (459)
T ss_pred CCCcHHHHHHH-HHcCCcEEecCCC-CCCC--------------CHHHHHHHHhhc--CCcEEEECCCCCCCCCCccCHH
Confidence 99999864333 3333333222111 3333 899999999975 7899999999988655666667
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-C---ccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-G---GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~---~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
..++|.++|++||+++|+||.|..+ ..+. . .+.+..+....+.||||.+.+|+|+||+++++++++.+.. ..
T Consensus 248 rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~---~k 324 (459)
T COG1167 248 RRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLR---LK 324 (459)
T ss_pred HHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHH---HH
Confidence 7999999999999999999999988 4433 2 3334445566788999999999999999999998888873 33
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH---HHHhcC---CceEEeeccceEEEEeecCCCccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID---AGKKAG---HAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
+..+.+++.+.+.+...-+. +..+.+++++.++.++++..- .+.++. ..+..+..|.++|+.+.
T Consensus 325 ~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~------- 394 (459)
T COG1167 325 QAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELP------- 394 (459)
T ss_pred HHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcC-------
Confidence 55666778888777554444 344555555555444444333 333331 23344455778888873
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecC-CCCC--------cccccc-CCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAP-SQFE--------AGFTSL-AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~~~~--------~~~~~~-~~~~~~i~~~~~~l~~~l~~ 367 (368)
+..+..++...++++|+.+.+ +..+ .+++++ ..+++++++++.+|.+++.+
T Consensus 395 ------~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 395 ------EGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455 (459)
T ss_pred ------CCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 445578999999999999998 4211 234544 44799999999999998864
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=217.20 Aligned_cols=333 Identities=14% Similarity=0.070 Sum_probs=204.3
Q ss_pred ceeccCCCc----------HHHHHHHHHHHHcCCC-CCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHH
Q 017633 3 QLIILFPSY----------LQVLAALGETMKKGTS-FGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMG 64 (368)
Q Consensus 3 ~~~~~g~~~----------~~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~ 64 (368)
.++++|+++ +++++++.+++..... .+.+.....++++.+++++. ++++|++|+|+++|+..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 456677664 4688998888875322 22334456777777777752 46899999999999999
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEE
Q 017633 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 144 (368)
Q Consensus 65 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~ 144 (368)
++.... .++|+|++..++|+.+... ....+..+....+....++. -|+++++++++. +...++
T Consensus 133 ~~~~l~--~~Gd~Vlv~~P~y~~y~~~-~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~--~~~~i~ 195 (430)
T PLN00145 133 IMSVLA--QPGANILLPRPGYPLYEAR-AVFSGLEVRHFDLLPERGWE------------VDLEGVEALADE--NTVAMV 195 (430)
T ss_pred HHHHhc--CCCCEEEEcCCCCccHHHH-HHHcCCEEEEeeCCcccCCc------------CCHHHHHHHhCc--CceEEE
Confidence 997662 4678999999998875433 33333333222111111111 189999988873 234455
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc---CCCcchhhhhhhcc-CCcccee
Q 017633 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG-GGLPVGA 218 (368)
Q Consensus 145 ~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~---~~~~di~s~sK~~~-~G~~iG~ 218 (368)
+++| +|++|.+.+.++ +++|+++|++||+++|+||+|.++ +.+.. .....+ .....+.||||.++ +|||+||
T Consensus 196 i~~P-~NPtG~v~~~~~-l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~ 273 (430)
T PLN00145 196 IINP-NNPCGSVYSYEH-LAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGW 273 (430)
T ss_pred EeCC-CCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEE
Confidence 5555 555676555444 999999999999999999999887 44322 111111 12234568999987 8999999
Q ss_pred eee--hHHHHH------HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q 017633 219 YGG--RRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 289 (368)
Q Consensus 219 v~~--~~~~~~------~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~ 289 (368)
+++ ++.+++ .+.. . .....+.+.+.+.++..+++.- .+++.++..+..+..++.+.+.+...+ ...
T Consensus 274 iv~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~ 348 (430)
T PLN00145 274 IATCDPNGILKETKVVDSIRN---Y-LNISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIKEIKCITC 348 (430)
T ss_pred EEEecchhhhhhhHHHHHHHH---H-hcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 986 333332 2221 1 1122245678888877776521 123333333333333333444443332 221
Q ss_pred -EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCC----CCccccccCCCHHHHHHHHHHHHH
Q 017633 290 -CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 290 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
..+..+.++|+.+..... +...+..+++..|+ ++||.+.|+. .+++|+++..+++++++++++|++
T Consensus 349 ~~~P~ga~y~~v~l~~~~~--------~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~ 420 (430)
T PLN00145 349 PHKPEGSMFVMVKLDLSCL--------SGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKS 420 (430)
T ss_pred CcCCCeeeEEEeccChhhc--------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 234556677776532100 00112456776565 6699999974 235677888899999999999999
Q ss_pred HHhh
Q 017633 364 VLRQ 367 (368)
Q Consensus 364 ~l~~ 367 (368)
++.+
T Consensus 421 ~~~~ 424 (430)
T PLN00145 421 FCLR 424 (430)
T ss_pred HHHH
Confidence 8864
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=213.71 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=204.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.+.+... .+|+.....+|++.++++++ .++++++|+|+++++..+++++ ..+++.|++.+++|...
T Consensus 44 ~~~~~~~~~~~~~~~~--~~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~--~~~gd~V~v~~P~y~~~ 119 (357)
T PRK14809 44 PSPAAVEAIREAAERV--HSYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM--LDPGDTVLVPDPGFAYY 119 (357)
T ss_pred CCHHHHHHHHHHHhhh--hcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCChHHH
Confidence 5667889998877643 33455567899999999998 7899999999999999998766 34678999999988644
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
.. .....+.++...+++...++. .+.+++++... +++++++++.+|++|.+++.+ .++++++
T Consensus 120 ~~-~~~~~g~~~~~~~l~~~~~~~------------~~~~~~~~~~~----~~k~i~l~~p~NPTG~~~s~~-~~~~l~~ 181 (357)
T PRK14809 120 GM-SARYHHGEVREYPVSKADDFE------------QTADTVLDAYD----GERIVYLTSPHNPTGSEIPLD-EVEALAE 181 (357)
T ss_pred HH-HHHHcCCeEEEEecccCcCCC------------cCHHHHHHhhc----CCcEEEEeCCCCCCCcCCCHH-HHHHHHH
Confidence 33 233334333222221111110 15666655442 355555555556667666544 4888888
Q ss_pred HHHHhCCEEEEehhhhch-hcccCc-cccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 169 ITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~-~~g~~~-~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|++ ++++|+||+|.+| ..+... ..+..+....+.||||.++ +|+|+||+++++++++.+... ..+++.+.
T Consensus 182 ~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~-----~~~~~~~~ 255 (357)
T PRK14809 182 RTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARV-----NTPFAASE 255 (357)
T ss_pred hCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHh-----CCCCCCCH
Confidence 8865 7899999999888 432211 1122223345679999998 899999999999998888742 23566788
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
+++.++.++++ ++++.++.++..+..++.+.+.+.... .+..+.++|+.+. +..++.
T Consensus 256 ~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~----------------~~~~~~ 312 (357)
T PRK14809 256 LACRAGLAALD---DDEHVERTVETARWAREYIREELDAPT----WESAGNFVLAEVG----------------DASAVA 312 (357)
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCCCEEEEECC----------------CHHHHH
Confidence 88888777764 344555555555555555555443322 2355777787652 136788
Q ss_pred HHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 326 RGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 326 ~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+.|.++||.+.++.. .++|+++. +++++++++++|+++++
T Consensus 313 ~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 313 EAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred HHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 899999999998753 24566644 57899999999999875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=216.03 Aligned_cols=317 Identities=19% Similarity=0.194 Sum_probs=211.9
Q ss_pred ceeccCC-CcHHHHHHHHHHHHcCC-------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFP-SYLQVLAALGETMKKGT-------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~-~~~~v~~a~~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+++++|. .+|.+++++.+++++.. .++...+...+|++.++++++..+. ++.+||++|+..++.+.....+
T Consensus 53 sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~-i~~~sG~~a~~~~i~~l~~~~~ 131 (410)
T PRK13392 53 SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESA-LLFTSGYVSNDAALSTLGKLLP 131 (410)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHHHhcCCC
Confidence 4567777 68999999999988742 1122334688999999999986554 5555689999999975532223
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNS 153 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~ 153 (368)
++ +++.+..+|+.....+...|..+ ..++++|.+++++.+.+. .+++++++++++++++
T Consensus 132 g~-~vi~~~~~h~s~~~~~~~~g~~~-------------------~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~t 191 (410)
T PRK13392 132 GC-VILSDALNHASMIEGIRRSGAEK-------------------QVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMD 191 (410)
T ss_pred CC-EEEEehhhhHHHHHHHHHcCCeE-------------------EEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCC
Confidence 44 44555567776544444333322 222334777788877643 2468899999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCC--Ccchh--hhhhhcc-CCccceeeeehHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIG-GGLPVGAYGGRRDI 225 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~--~~di~--s~sK~~~-~G~~iG~v~~~~~~ 225 (368)
|.+.+ +++|.++|++||+++|+||+|+ ++ ..|... ....+. .+|++ ||||+++ .| ||+++++++
T Consensus 192 G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~~~ 263 (410)
T PRK13392 192 GDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGCLG---GYIAASADL 263 (410)
T ss_pred ccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhccc---chhhcCHHH
Confidence 99888 9999999999999999999996 44 222221 223333 24554 8999998 33 788888888
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
++.++.....+. .+.+.++++++++.++++.+... ...+++.++++++++.|++. ++. ...+.++++.+.+.
T Consensus 264 ~~~l~~~~~~~~-~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~i~~~- 336 (410)
T PRK13392 264 IDFVRSFAPGFI-FTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN----GIP-VMPSPSHIVPVMVG- 336 (410)
T ss_pred HHHHHHhCcchh-ccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCC-CCCCCCCEEEEEeC-
Confidence 887764332222 24456778888888999876543 23455667777777777663 322 12234455444431
Q ss_pred CCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC-------Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~-------~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+....++++.|+ ++||.+.+... ..+|+ +...+++|+++++++|++++++
T Consensus 337 ------------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 337 ------------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred ------------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2234578999987 57999987532 23443 4578999999999999998765
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=215.52 Aligned_cols=326 Identities=16% Similarity=0.049 Sum_probs=200.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+++++.+.+......+.+.....+|++.+++++ + +++++++|+|+++++..++..+ ..++|.|++..
T Consensus 47 p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~--~~~gd~Vl~~~ 124 (398)
T PRK08363 47 PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGAL--LDPGDEILIPG 124 (398)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh--CCCCCEEEEcC
Confidence 4667888888877653333334566778888888875 2 4679999999999999998766 35778999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|......+...++..+...... ..++. .|++++++.++ ++++++++...+|++|.+.+.++
T Consensus 125 p~y~~~~~~~~~~g~~~v~~~~~~-~~~~~------------~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~- 187 (398)
T PRK08363 125 PSYPPYTGLVKFYGGVPVEYRTIE-EEGWQ------------PDIDDIRKKIT---EKTKAIAVINPNNPTGALYEKKT- 187 (398)
T ss_pred CCCcchHHHHHHcCCEEEEecccc-ccCCc------------CCHHHHHhhCC---cceEEEEEECCCCCCCcCcCHHH-
Confidence 888876544333332222110111 11110 17888988886 34565555544555676665454
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccC---CCcchhhhhhhcc-CCccceeeee--hHHHHHHhcCCCCc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGG--RRDIMEMVAPAGPM 235 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~--~~~~~~~~~~~~~~ 235 (368)
+++|+++|++||+++|+||+|.++ ..+.......+. ...-+.||||.++ +|+|+||+++ ++++++.+......
T Consensus 188 ~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~ 267 (398)
T PRK08363 188 LKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDK 267 (398)
T ss_pred HHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHH
Confidence 999999999999999999999877 433221111111 1223469999987 8999999986 66655554321101
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccceEEEEeecCCCcccchhc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....++.+.+++.++.+++.. .+++.+..++..+..++.+.+.+...+......+ .+.++|+.+....
T Consensus 268 ~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~-------- 337 (398)
T PRK08363 268 LARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGP-------- 337 (398)
T ss_pred HhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCC--------
Confidence 1112356788888887777752 1334434333333444444444433322112223 3444554542100
Q ss_pred ccccHHHHHHH-HHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFY-RGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~-~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..+++ ..|.++||.+.++.. .++|+++..+++++++++++|++++.+
T Consensus 338 ---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 338 ---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred ---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 01124454 556788999998742 245777777899999999999998754
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=214.47 Aligned_cols=326 Identities=16% Similarity=0.124 Sum_probs=206.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+.+++.+.+......+.+.....+|++.+++++ + ..+++++++|+++++..++..+ ..+++.|++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~--~~~gd~vl~~~ 122 (393)
T PRK05764 45 TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL--LDPGDEVIIPA 122 (393)
T ss_pred CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh--cCCCCEEEecC
Confidence 4678889888877653222334455677777777765 2 4578999999999999988765 34678899998
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|.+.... ....|.++.........++. -|++++++.++ ++++++++...+|++|.+.+.. .
T Consensus 123 p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~-~ 185 (393)
T PRK05764 123 PYWVSYPEM-VKLAGGVPVFVPTGEENGFK------------LTVEQLEAAIT---PKTKALILNSPSNPTGAVYSPE-E 185 (393)
T ss_pred CCCcchHHH-HHHcCCEEEEEecCcccCCc------------CCHHHHHHhhC---ccceEEEEECCCCCCCcccCHH-H
Confidence 888765433 33334433221111111110 17899999886 3455555544455566665544 4
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc-----cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-----EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~-----~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++||+++|+||+|.++ ..+.. ... +..+....+.||||.++ +|+|+||+++++++++.+..
T Consensus 186 ~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~--- 262 (393)
T PRK05764 186 LEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSK--- 262 (393)
T ss_pred HHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHH---
Confidence 999999999999999999999877 43321 111 11222334568999999 89999999999998888763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchh
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+...+++++.++...++. .+++.++.++..+..++.+.+.+.+. +.....+..+.++|+.+.....
T Consensus 263 ~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~------ 334 (393)
T PRK05764 263 LQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------ 334 (393)
T ss_pred HHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc------
Confidence 22223446678888887777651 22333334443333344444444444 3322223334566666532110
Q ss_pred cccccHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.......++...|+ ++||.+.++.. .++|+++..+++++++++++|.+++.+
T Consensus 335 --~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 335 --KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred --cccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 00012467888776 47999998743 346778888999999999999998864
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=213.92 Aligned_cols=326 Identities=14% Similarity=0.035 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+++++.+++...... +.+.....++++++++++. +++++++|+|+++++..++.... .++|.|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vlv~ 126 (409)
T PLN02656 49 TTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA--RPGANILLP 126 (409)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh--CCCCeEEEe
Confidence 4567888888877763322 3344556677777777652 46899999999999999987653 467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|.... ......|..+...+.....+.. -|++++++.++. +...+++++| +|++|.+.+.+
T Consensus 127 ~p~y~~~~-~~~~~~g~~~~~i~~~~~~~~~------------~d~~~l~~~~~~--~~~~v~l~~P-~NPtG~~~s~~- 189 (409)
T PLN02656 127 RPGFPIYE-LCAAFRHLEVRYVDLLPEKGWE------------VDLDAVEALADQ--NTVALVIINP-GNPCGNVYSYQ- 189 (409)
T ss_pred CCCCCcHH-HHHHHcCCEEEEEeCCCcCCCC------------CCHHHHHHHhcc--CceEEEEECC-CCCCCCCCCHH-
Confidence 98886543 2233334333222111111110 178999888863 2444555555 45566665544
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc---cccCCCcchhhhhhhcc-CCccceeeeeh--------HHHHH
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGGR--------RDIME 227 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~---~~~~~~~di~s~sK~~~-~G~~iG~v~~~--------~~~~~ 227 (368)
.+++|+++|++||+++|+||+|.++ ..+.. ... +.......+.||||.|+ +|+|+||++++ +++++
T Consensus 190 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~ 269 (409)
T PLN02656 190 HLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVE 269 (409)
T ss_pred HHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHH
Confidence 4999999999999999999999987 54422 111 11122334679999977 89999999883 56777
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeccceEEEEeecC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEG 305 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 305 (368)
.+.... . ...+.+.+++.++..+++.. .+.+.++.++..+..++.+.+.+...+... ..+..+.++|+.+...
T Consensus 270 ~~~~~~---~-~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~ 344 (409)
T PLN02656 270 RIKKYF---D-ILGGPATFIQAAVPTILEQT-DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLS 344 (409)
T ss_pred HHHHHH---h-hhcCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchh
Confidence 665211 1 12346788888887777521 122333333333333444444444433211 1234456777776321
Q ss_pred CCcccchhcccccHHHHH-HHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFAR-FYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~-~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. ....+..+ +.+.|.++||.+.|+.. +++|+++..+++++++++++|++++.+
T Consensus 345 ~~--------~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 345 LL--------EDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLR 403 (409)
T ss_pred hc--------CCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 00 00011234 44667788999999742 356778888999999999999998754
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=216.21 Aligned_cols=327 Identities=14% Similarity=0.050 Sum_probs=208.0
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+++++.+.+...... +.+.....+|+++++++++ +.+++++|+|+++++..++..+. .+++.|++..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~v~i~~ 126 (401)
T TIGR01264 49 TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA--NAGQNILVPR 126 (401)
T ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC--CCCCEEEEeC
Confidence 4567888888877653222 3355566778888888774 46789999999999999997663 4678899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..... .....|..+............ -|++++++.++. +++++++...+|++|.+++ .+.
T Consensus 127 P~y~~~~~-~~~~~g~~v~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~~~~p~NPtG~~~~-~~~ 189 (401)
T TIGR01264 127 PGFPLYET-LAESMGIEVKLYNLLPDKSWE------------IDLKQLESLIDE---KTAALIVNNPSNPCGSVFS-RQH 189 (401)
T ss_pred CCChhHHH-HHHHcCCEEEEeecCCccCCC------------CCHHHHHHHhcc---CceEEEEcCCCCCCCCCCC-HHH
Confidence 88876543 333334433222111111110 178999988863 4455555444555666555 444
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-C--CCcchhhhhhhcc-CCccceeeeehH------HHHHHhc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-G--VTPDLTTLGKIIG-GGLPVGAYGGRR------DIMEMVA 230 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-~--~~~di~s~sK~~~-~G~~iG~v~~~~------~~~~~~~ 230 (368)
+++|+++|+++|+++|+||+|.+| ..+.. .....+ . ....+.||||.++ +|+|+||+++++ ++++.+.
T Consensus 190 ~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~ 269 (401)
T TIGR01264 190 LEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLV 269 (401)
T ss_pred HHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHH
Confidence 999999999999999999999988 54421 111111 1 1233569999987 899999998763 3444433
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
. ... ..++.+.+++.++...++.. .+++.++.++..+..++.+.+.+... +.....+..|.++|+.+.....
T Consensus 270 ~---~~~-~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~-- 342 (401)
T TIGR01264 270 K---LSQ-RILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHF-- 342 (401)
T ss_pred H---Hhh-ccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEeccccc--
Confidence 1 111 23456778888877777521 13444444444444444555544444 3322345567788887642100
Q ss_pred cchhcccccHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 310 FEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++.....++++.|+ ++||.+.++.. .++|+++..+++++++++++|.+.+.++
T Consensus 343 ------~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 343 ------PEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred ------CCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 01112467888876 68999998742 3456777778999999999999988753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=212.53 Aligned_cols=321 Identities=17% Similarity=0.110 Sum_probs=200.1
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhh----CC---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISA----VP---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+.+++.+.+......+.+.....++++.++++ ++ .++ ++++|+|+++|+..++... ..++|.|++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~--~~~gd~vli~~ 116 (387)
T PRK07777 39 PPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL--VEPGDEVLLIE 116 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--cCCCCEEEEeC
Confidence 45677877776654322233334456667766664 44 233 7999999999999888655 34678899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+.|+... ......+......++... .++. .|++++++.++ ++++++++++.+|++|.+++ .+
T Consensus 117 p~y~~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~-~~ 179 (387)
T PRK07777 117 PYYDSYA-AVIAMAGAHRVPVPLVPDGRGFA------------LDLDALRAAVT---PRTRALIVNSPHNPTGTVLT-AA 179 (387)
T ss_pred CCchhhH-HHHHHCCCEEEEeecCCccCCCc------------CCHHHHHHhcC---cccEEEEEcCCCCCCCccCC-HH
Confidence 8887754 333333433222111111 0110 17899998886 35677777666666776664 45
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+++|+++|++|++++|+||+|.++ ..+. ...... .+....+.||||.|+ +|+|+||+++++++++.+..
T Consensus 180 ~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~--- 256 (387)
T PRK07777 180 ELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRA--- 256 (387)
T ss_pred HHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHH---
Confidence 5999999999999999999999877 4332 111211 112233568999999 89999999999988887763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....++..+.+.+.++..+++. .+.+.+.+++..+..++.+.+.+...+.....+..+.++|+.+...
T Consensus 257 ~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~--------- 325 (387)
T PRK07777 257 AKQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPL--------- 325 (387)
T ss_pred HHhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEeccccc---------
Confidence 12223445566666665555542 1333333333333333334333333343322333455666665310
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCCC---------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQF---------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~~---------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...++.++++.|+ ++||.+.|+.. ..+|+++..+++++++++++|+++..
T Consensus 326 --~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 326 --GYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 0113578999997 57999988731 23677777889999999999998754
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=214.12 Aligned_cols=309 Identities=13% Similarity=0.072 Sum_probs=207.1
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
+++| .+|.+++++.+.+... .+++.....+++++++++++ +++++++|+|+++++..+++... .+++.|++..+
T Consensus 39 ~~~~-~~~~v~~a~~~~~~~~--~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~--~~gd~v~~~~p 113 (359)
T PRK03158 39 NPYG-PSPKVKEAIAAHLDEL--ALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL--NPGTNTVMAEP 113 (359)
T ss_pred CCCC-CCHHHHHHHHHHHHHh--hcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh--CCCCEEEEcCC
Confidence 3455 5788999998877652 23456678899999999997 67899999999999988876552 46789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|+.....+ ...|.++...... ++. .|++++++.++ +++++++++..+|++|.+.+.++ +
T Consensus 114 ~y~~~~~~~-~~~g~~~~~~~~~--~~~-------------~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~-l 173 (359)
T PRK03158 114 TFSQYRHNA-IIEGAEVREVPLK--DGG-------------HDLEAMLKAID---EQTKIVWICNPNNPTGTYVNHEE-L 173 (359)
T ss_pred CHHHHHHHH-HHcCCeEEEEecC--CCC-------------cCHHHHHHhcC---CCCCEEEEeCCCCCCCCCCCHHH-H
Confidence 998754332 2333333221111 111 17888888775 35566665555666787777333 5
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hccc-Ccc---ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAY-GGA---QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~---~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
.++++.|+ +|+++|+||+|.++ ..+. ... .+..+...-+.||||.++ +|+|+||+++++++++.+....
T Consensus 174 ~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~---- 248 (359)
T PRK03158 174 LSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIAR---- 248 (359)
T ss_pred HHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhc----
Confidence 55555543 69999999999887 4322 111 112222333469999999 8999999999999888876422
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+++.+.+++.++.++++ ++++.+++.+..+..++.+.+.+.+.+.. ..++.+.++|+.+.
T Consensus 249 -~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~~i~~~~~-------------- 309 (359)
T PRK03158 249 -PPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGLF-YYPSQTNFIFVDTG-------------- 309 (359)
T ss_pred -CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCe-eCCCcCcEEEEECC--------------
Confidence 245778999999888775 33455555444444455555555444432 23455677777652
Q ss_pred cHHHHHHHHHHHHcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHH
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
.+..++++.|+++||.+.++. ..++|+++. +.+++++++++|+++
T Consensus 310 -~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 310 -RDANELFEALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred -CCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 124788999999999999973 223455533 789999999999886
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=214.26 Aligned_cols=326 Identities=13% Similarity=0.048 Sum_probs=199.1
Q ss_pred CcHHHHHHHHHHHHcCC-CCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|.+++++.+.+.... ..+.+.....+|++.+++++ + .++++++|+|+++++..+++.+. .+++.|++.
T Consensus 50 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~--~~gd~v~v~ 127 (409)
T PLN00143 50 TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA--RPEANILLP 127 (409)
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc--CCCCEEEEc
Confidence 45568888988877532 22335555667777777765 2 46899999999999999997663 567899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|+...... ...|..+........+++. -|+++++++++. +...+++++| +|++|.+++ .+
T Consensus 128 ~P~y~~~~~~~-~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~--~~~~~~~~nP-~NPTG~~~s-~~ 190 (409)
T PLN00143 128 RPGFPDVETYA-IFHHLEIRHFDLLPEKGWE------------VDLDAVEAIADE--NTIAMVIINP-GNPCGSVYS-YE 190 (409)
T ss_pred CCCCcCHHHHH-HHcCCEEEEEeccCCCCCc------------CCHHHHHHhccc--CCEEEEEECC-CCCCCCccC-HH
Confidence 99988764333 3333333221111111110 178999988763 2455666666 445566555 44
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccC---CCcchhhhhhhcc-CCccceeeeeh--HHHH------H
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGGR--RDIM------E 227 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~~--~~~~------~ 227 (368)
.+++|+++|++|++++|+||+|.++ ..+.. .....+. ....+.||||.|+ +|+|+||++++ +.+. +
T Consensus 191 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~ 270 (409)
T PLN00143 191 HLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIAD 270 (409)
T ss_pred HHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHH
Confidence 4999999999999999999999987 54332 1111111 2234569999988 89999999883 3332 2
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeccceEEEEeecC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEG 305 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 305 (368)
.+.. ...... ..+.+++.++.++++.. .+++.++..+..+..++.+.+.+.+.+... ..+..+.++|+.+...
T Consensus 271 ~~~~---~~~~~~-~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~ 345 (409)
T PLN00143 271 SIKK---ALNPAP-FPPTFIQAAIPEILEKT-TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLL 345 (409)
T ss_pred HHHH---HHhccC-CCCchHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchh
Confidence 2221 111122 23667777777666411 122333333333333333434333333221 2234577888877321
Q ss_pred CCcccchhcccccHHHHHHHH-HHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYR-GMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. +...+..+++. .+.++||.+.|+.. .++|+++..+++++++++++|++++.+
T Consensus 346 ~~--------~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~ 404 (409)
T PLN00143 346 LL--------EDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGR 404 (409)
T ss_pred hc--------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 00 00112355654 44678999999742 356788888899999999999998854
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=212.40 Aligned_cols=329 Identities=14% Similarity=0.079 Sum_probs=205.8
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
++.+..++.+.+++.+.+.....+ +.+.....+|++.+++++ + .++ ++++|+|+++++..++..+ ..++
T Consensus 38 ~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~--~~~g 115 (395)
T PRK08175 38 NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLAT--LDHG 115 (395)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh--CCCC
Confidence 344445566888887776543222 223344566666666653 3 345 7999999999999887655 3567
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+.|++..++|......+. ..|..+...+... .+ .+.++++++++...+++++++++..+|++|.
T Consensus 116 d~Vlv~~P~y~~~~~~~~-~~g~~~~~v~~~~-~~--------------~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~ 179 (395)
T PRK08175 116 DTVLVPNPSYPIHIYGAV-IAGAQVRSVPLVE-GV--------------DFFNELERAIRESYPKPKMMILGFPSNPTAQ 179 (395)
T ss_pred CEEEEcCCCCcchHHHHH-HcCCeEEEEeccc-CC--------------CcHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 899999998887654443 3333222111110 11 1478888888754346777777644555666
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~ 228 (368)
+.+ .+.+++|+++|++||+++|+||+|.++ ..+.. ..... .+....+.||||.|+ +|+|+||+++++++++.
T Consensus 180 ~~~-~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~ 258 (395)
T PRK08175 180 CVE-LEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSA 258 (395)
T ss_pred CCC-HHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHH
Confidence 555 444999999999999999999999887 43321 11111 122233568999997 89999999999999887
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCc
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
+... .....++.+.+++.++..+++. .+.+.+++++..+..++.+.+.+...+.....+..+.++|+.+....
T Consensus 259 ~~~~---~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~-- 331 (395)
T PRK08175 259 LARI---KSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPY-- 331 (395)
T ss_pred HHHH---HhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCccc--
Confidence 7632 1223445566677776666642 12233333333333334444444444443233445778888774211
Q ss_pred ccchhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 309 NFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......+++..|+ ++||.+.++.. .++|+++..+++.+.+++++|++++.+
T Consensus 332 --------~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 332 --------AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred --------CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 0112477887776 57999999732 246677667899999999999998865
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=214.59 Aligned_cols=324 Identities=14% Similarity=0.048 Sum_probs=205.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCC-ChhHHHHHHHHHhhCC-------------CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 11 YLQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAVP-------------SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~-------------~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
++.+++++.+.+.......|+ .....+|++.++++++ +++++++|+|+++++..++.++. .+++
T Consensus 52 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--~~gd 129 (412)
T PTZ00433 52 PAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC--DEGD 129 (412)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc--CCCC
Confidence 456888887776642222233 3346677777777652 36899999999999999997663 4678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
.|++..++|...... ....|..+........ .... |++++++.++. +++++++...+|++|.
T Consensus 130 ~vlv~~P~y~~~~~~-~~~~g~~~~~i~~~~~~~~~~-------------d~~~l~~~~~~---~~~~i~~~~p~NPtG~ 192 (412)
T PTZ00433 130 NILVPAPGFPHYETV-CKAYGIEMRFYNCRPEKDWEA-------------DLDEIRRLVDD---RTKALIMTNPSNPCGS 192 (412)
T ss_pred EEEEccCCcccHHHH-HHHcCCEEEEEecCccccCcC-------------CHHHHHHHhcc---CceEEEEeCCCCCCCc
Confidence 899999988876433 3333433322222111 1111 78999888863 4565555444555676
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccC---CCcchhhhhhhcc-CCccceeeee------hH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGG------RR 223 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~------~~ 223 (368)
+++.++ +++|+++|++||+++|+||+|.+| ..+.. .....+. ...-+.||||.++ +|+|+||+++ .+
T Consensus 193 ~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~ 271 (412)
T PTZ00433 193 NFSRKH-VEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGG 271 (412)
T ss_pred ccCHHH-HHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHH
Confidence 665555 999999999999999999999887 44322 1111111 1223568999997 8999999986 24
Q ss_pred HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEe
Q 017633 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFF 302 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 302 (368)
++++.+... ....++.+.+++.++.+++..- .+.+.++.++..+..++.+.+.+... +.....+..+.++|+.+
T Consensus 272 ~~~~~~~~~----~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l 346 (412)
T PTZ00433 272 DFLDGMKRL----GMLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRL 346 (412)
T ss_pred HHHHHHHHH----hhccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEe
Confidence 566665521 1123467888888877776521 12344444444444444454444433 33223344566778776
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..... +...+..++++.|++ +||.+.++.. .++|+++...++++++++++|.+++..
T Consensus 347 ~~~~~--------~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 347 DLEKF--------RDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCER 408 (412)
T ss_pred chhhc--------CCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 32100 000124688999884 7999999753 346777778899999999999998864
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=207.51 Aligned_cols=307 Identities=16% Similarity=0.129 Sum_probs=202.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.++.+++++.+.+.......++.+...++++.++++++ .++++++++|+++++..++... ..++|.|++.+++|...
T Consensus 36 ~p~~~~~a~~~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l--~~~gd~Vlv~~p~y~~~ 113 (351)
T PRK14807 36 LPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF--INKGDVVIYPHPSFAMY 113 (351)
T ss_pred CCHHHHHHHHHHhhcCcccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh--cCCCCEEEEeCCChHHH
Confidence 56789999988776432233444557899999999987 6789999999999999888765 35678999999988754
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
. ......|.++.........++ |++++++.++.. ++++++++..+|++|.+.+ .+++.+
T Consensus 114 ~-~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~~~--~~k~v~l~~p~NPtG~~~~----~~~l~~ 172 (351)
T PRK14807 114 S-VYSKIAGAVEIPVKLKEDYTY--------------DVGSFIKVIEKY--QPKLVFLCNPNNPTGSVIE----REDIIK 172 (351)
T ss_pred H-HHHHHcCCeEEEeecCCCCCC--------------CHHHHHHHhhcc--CCCEEEEeCCCCCCCCCCC----HHHHHH
Confidence 3 333334443332221111111 789999988742 5676666666666788888 778888
Q ss_pred HHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHH
Q 017633 169 ITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 246 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~ 246 (368)
+|++++.++|+||+|.++..... ...+..+....+.||||.++ +|+|+||+++++++++.+.... ..+..+.+
T Consensus 173 l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~-----~~~~~~~~ 247 (351)
T PRK14807 173 IIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVK-----SPYNINSL 247 (351)
T ss_pred HHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHcc-----CCCCcCHH
Confidence 88888889999999987721111 11122223344679999998 9999999999999988887422 23456788
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 247 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 247 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
++.++...++.-.-++..+.+.++++.+.+.|++. .+.. ..+..++++|+.+. +..++++
T Consensus 248 ~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~---~g~~-~~~~~~~~~~i~~~----------------~~~~~~~ 307 (351)
T PRK14807 248 SQVIALKVLRTGVLKERVNYILNERERLIKELSKI---PGIK-VYPSKTNFILVKFK----------------DADYVYQ 307 (351)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---CCcE-ECcCCccEEEEEcC----------------CHHHHHH
Confidence 88887777652100122333444444444444321 1322 23445667776552 1367889
Q ss_pred HHHHcCeeecCCCC-----CccccccCCCHHHHHHHHHHHHHHH
Q 017633 327 GMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 327 ~l~~~Gi~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.|+++||.+.+++. ..+|+++. +.++.+++++.|++++
T Consensus 308 ~l~~~gV~v~~~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 308 GLLERGILVRDFSKVEGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred HHHHCCEEEEECCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 99999999977532 23556544 5678899999998764
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=215.24 Aligned_cols=318 Identities=16% Similarity=0.101 Sum_probs=200.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCC----hhHHHHHHHHHhhCC---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPC----LLENVLAEMVISAVP---SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+.+++.+.+......+.+. +....+++++.+.++ +. +++++|+|+++++..++... ..+++.|++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~--~~~gd~Vli~ 121 (386)
T PRK09082 44 GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL--VRPGDEVIVF 121 (386)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH--cCCCCEEEEe
Confidence 35678888888776532222222 344455555555544 23 37999999999999999765 2467889998
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|...... ....|..+............ |++++++.++ ++++++++++.+|++|.+.++++
T Consensus 122 ~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~ 184 (386)
T PRK09082 122 DPSYDSYAPA-IELAGGRAVRVALQPPDFRV-------------DWQRFAAAIS---PRTRLIILNTPHNPSGTVWSAAD 184 (386)
T ss_pred CCCchhhHHH-HHHcCCEEEEEecCcccccC-------------CHHHHHHhcC---ccceEEEEeCCCCCCCcCCCHHH
Confidence 8887765333 33334433222211111111 7899998886 35666666655566776665554
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccc-cccC---CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQ-EYFG---VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~-~~~~---~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|.++|++||+++|+||+|.++ ..+. .... ...+ ....+.||||.++ +|+|+||+++++++++.+..
T Consensus 185 -~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~--- 260 (386)
T PRK09082 185 -MRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRK--- 260 (386)
T ss_pred -HHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHH---
Confidence 999999999999999999999877 4332 1111 1111 2233568999998 89999999999999888763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
......++.+.+++.++...++. .+.+.+++++..+..++.+.+.+.+.+.....+..+.++|+.+...
T Consensus 261 ~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~--------- 329 (386)
T PRK09082 261 VHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAI--------- 329 (386)
T ss_pred HHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEecccc---------
Confidence 22334556788888776655542 2333444433333333444444433443323334455677776310
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCCC--------CccccccCCCHHHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQF--------EAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~~--------~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
...+..++++.|+ ++||.+.|+.. .++|+++..+++++++++++|++
T Consensus 330 --~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 330 --SDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 1123478888874 67999988741 24677777889999999999875
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=217.73 Aligned_cols=336 Identities=15% Similarity=0.111 Sum_probs=195.9
Q ss_pred CcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+++++.+.+.+...+ +.+.....+|++.+++++ + ++++|++|+|+++++..++.+ ..++|.|++.
T Consensus 49 ~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l---~~~Gd~Vlv~ 125 (433)
T PRK06855 49 IPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGL---LRREARVIGP 125 (433)
T ss_pred CCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHh---cCCCCeEEEe
Confidence 3456777888776543222 334455667777777764 2 468999999999999888753 3568899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|+++........+......+.....++. -|+++|++.++++++...+++++| +|++|.+++ .+
T Consensus 126 ~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~------------~d~~~l~~~~~~~~~~~~i~l~~P-~NPTG~~~s-~~ 191 (433)
T PRK06855 126 SPAYSTHSSAEAAHAGYPPVTYRLDPENNWY------------PDLDDLENKVKYNPSIAGILLINP-DNPTGAVYP-KE 191 (433)
T ss_pred CCCCchHHHHHHHhcCCeEEEEecccccCCC------------CCHHHHHHHHhcCCCceEEEEECC-CCCCCcCCC-HH
Confidence 9999985432222223322211111111110 189999999975422334455555 444565555 55
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc--C-CCcchhhhhhhcc-CCccceeeeeh-----H---HHHH
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF--G-VTPDLTTLGKIIG-GGLPVGAYGGR-----R---DIME 227 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~--~-~~~di~s~sK~~~-~G~~iG~v~~~-----~---~~~~ 227 (368)
.+++|+++|++||+++|+||+|.++ +.+.. ...... + ....+.||||.++ +|||+||++++ + ++++
T Consensus 192 ~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~ 271 (433)
T PRK06855 192 ILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYIN 271 (433)
T ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHH
Confidence 5999999999999999999999888 54421 111111 1 1234579999998 99999999862 2 2333
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.+.. ... ...+++.+++.++.++++.-.-+.+.++.++..+..++.+.+.+... +.....+..+.++|+.+....
T Consensus 272 ~~~~---~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~ 347 (433)
T PRK06855 272 SILN---AKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGV 347 (433)
T ss_pred HHHH---hhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeecccccc
Confidence 3321 111 23356778888877666411001233333333333333343434333 222233445667788774311
Q ss_pred Ccc-----cc----------hhcccccHHHHHHHHH-HHHcCeeecCCCCC-----ccccccC-CCHHHHHHHHHHHHHH
Q 017633 307 VYN-----FE----------DAKKSETTKFARFYRG-MLEEGVYFAPSQFE-----AGFTSLA-HSSDDIQHTITAAEKV 364 (368)
Q Consensus 307 ~~~-----~~----------~~~~~~~~~~~~~~~~-l~~~Gi~~~~~~~~-----~~~~~~~-~~~~~i~~~~~~l~~~ 364 (368)
... +. +...+ ..+..+++.. +.++||.+.|+..+ .+|+++. .+++++++++++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~ 426 (433)
T PRK06855 348 LNNKQSLPIENPEVKEYVEGLVKGP-VSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEK 426 (433)
T ss_pred ccccccCCcchhhhHHHHHHHHhcC-CCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHH
Confidence 000 00 00000 0023566655 45779999998422 3567666 4999999999999998
Q ss_pred Hhh
Q 017633 365 LRQ 367 (368)
Q Consensus 365 l~~ 367 (368)
+.+
T Consensus 427 ~~~ 429 (433)
T PRK06855 427 IEE 429 (433)
T ss_pred HHH
Confidence 864
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=212.50 Aligned_cols=309 Identities=14% Similarity=0.067 Sum_probs=195.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C-----CC-CeEEEeCChHHHHHHHHHHHHHhcCCce--
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P-----SI-EMVRFVNSGTEACMGVLRLARAFTGRER-- 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-----~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~-- 77 (368)
.++.+++++.+.+.....| .+.....+|++.+++++ + +. +++++|+|+++++..++++.. .+++.
T Consensus 42 ~~~~~~~a~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~--~~gd~~~ 118 (393)
T TIGR03538 42 TPAFVLEALRENLHGLSTY-PTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI--NPGQAPL 118 (393)
T ss_pred CCHHHHHHHHHHhhccCCC-CCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc--CCCCcce
Confidence 4667889888876543333 23344566666666654 2 34 479999999999999987663 34443
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++..++|.+.... ....|.++.........++. .|++++++.+.+ +++++++...+|++|.++
T Consensus 119 vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~---~~k~i~l~~p~NPtG~~~ 182 (393)
T TIGR03538 119 VVMPNPFYQIYEGA-ALLAGAEPYFLNCTAENGFL------------PDFDAVPESVWR---RCQLLFVCSPGNPTGAVL 182 (393)
T ss_pred EEecCCCCcchHHH-HHhcCCeEEEeeccccCCCC------------CCHHHHHHHHhh---cceEEEEeCCCCCcCccc
Confidence 77778888765433 33334433222221111111 178899888863 566666554455566655
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc--Ccc----ccccC-----CCcchhhhhhhcc-CCccceeeeehHH
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA----QEYFG-----VTPDLTTLGKIIG-GGLPVGAYGGRRD 224 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~----~~~~~-----~~~di~s~sK~~~-~G~~iG~v~~~~~ 224 (368)
+ .+.+++|+++|++||++||+||+|.++ ..+. ... ....+ ....+.||||.++ +|+|+||++++++
T Consensus 183 s-~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~ 261 (393)
T TIGR03538 183 S-LDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAE 261 (393)
T ss_pred C-HHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHH
Confidence 5 555999999999999999999999887 4321 111 11111 1233569999987 8999999999998
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH----HHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY----EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
+++.+.. .....+++.+.+.+.++.+++. .+++. +.++++++.+.+.|++. .....+..+.++|+
T Consensus 262 l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~p~gg~f~~~ 330 (393)
T TIGR03538 262 ILKAFLR---YRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEILGQV-----LDLELPDAGFYLWP 330 (393)
T ss_pred HHHHHHH---HHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHhh-----CcccCCCeeEEEEE
Confidence 8887763 2222344667788877766653 23333 33444444444444332 12233455777788
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC------------CccccccCCCHHHHHHHHHHHHHH
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------------EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------------~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
.+. .+..++++.|+ ++||.+.|+.. .++|+++..+++++++++++|++.
T Consensus 331 ~~~---------------~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 331 KVP---------------GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF 392 (393)
T ss_pred ECC---------------CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence 762 11367888886 57999988742 235677777899999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=210.40 Aligned_cols=309 Identities=16% Similarity=0.070 Sum_probs=199.4
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+++ .+|.+++++.+. ... ..++.....+|+++++++++ ++++|++++|+++++..++... ..+++.|++.++.
T Consensus 63 p~~-~~~~v~~a~~~~-~~~--~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~--~~~gd~Vlv~~P~ 136 (380)
T PLN03026 63 PYG-PPPEVLEALGNM-KFP--YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV--LDPGDKIIDCPPT 136 (380)
T ss_pred CCC-CCHHHHHHHHhh-Hhh--ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCC
Confidence 444 566788887642 221 22345557899999999998 7889999999999999888765 2467889999988
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|..+.. .....|.++........... |++++++.+.. ++++++++++.+|++|.+.+ .+
T Consensus 137 y~~y~~-~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~~----~~ 195 (380)
T PLN03026 137 FGMYVF-DAAVNGAEVIKVPRTPDFSL--------------DVPRIVEAVET--HKPKLLFLTSPNNPDGSIIS----DD 195 (380)
T ss_pred hHHHHH-HHHHcCCEEEEeecCCCCCc--------------CHHHHHHHHhc--cCCcEEEEeCCCCCCCCCCC----HH
Confidence 864332 22333433322111110111 78999988842 35676666666677788777 56
Q ss_pred HHHHHHHHhCCEEEEehhhhch-hcccCcc-ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccC
Q 017633 165 AIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 241 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~ 241 (368)
++.++++.. +++|+||+|.+| ..+.... .+..+...-+.||||.++ +|+|+||+++++++++.+.... ..+
T Consensus 196 ~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~-----~~~ 269 (380)
T PLN03026 196 DLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAK-----QPY 269 (380)
T ss_pred HHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhc-----CCC
Confidence 666666544 899999999887 4332111 111222233569999999 9999999999999988876422 235
Q ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 242 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
+.+.+++.++.++++ +.++.++.++.....++.+.+.+...+.....+..++++|+.+. ...+.
T Consensus 270 ~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~-------------~~~~~ 333 (380)
T PLN03026 270 NVSVAAEVAACAALS---NPKYLEDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVT-------------SGRDA 333 (380)
T ss_pred CCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECC-------------CCCCH
Confidence 678888888887775 22333343333333344444444444432234456777777652 11235
Q ss_pred HHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHH
Q 017633 322 ARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
.++++.|+++||.++++.. .++|+++. +.+++++++++|+++
T Consensus 334 ~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 334 KKLKEDLAKMGVMVRHYNSKELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred HHHHHHHHHCCeEEEECCCCCCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 7899999999999988642 23456544 667888999888764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=210.97 Aligned_cols=330 Identities=11% Similarity=0.026 Sum_probs=203.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCh----hHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCL----LENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+.+++.+.+......+.+.. +.+++++.+.+.++ .++++++|+|+++|+..++... ..+++.|++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~--~~~gd~vl~~~ 124 (402)
T PRK06107 47 TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT--LEAGDEVIIPA 124 (402)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh--cCCCCEEEEec
Confidence 356788888888765332223333 44445555554444 4678999999999999998654 35678899988
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
+.|.++..... ..+........+...++. -|++++++.++ ++++++++...+|++|.+.+ .+.
T Consensus 125 p~y~~y~~~~~-~~~~~~~~v~~~~~~~~~------------~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s-~~~ 187 (402)
T PRK06107 125 PYWVSYPDMVL-ANDGTPVIVACPEEQGFK------------LTPEALEAAIT---PRTRWLILNAPSNPTGAVYS-RAE 187 (402)
T ss_pred CCCcCHHHHHH-HcCCEEEEecCCcccCCC------------CCHHHHHhhcC---cCceEEEEECCCCCCCcCcC-HHH
Confidence 87776643333 333222111111111110 16889988886 34555544444455665555 444
Q ss_pred HHHHHHHHHHh-CCEEEEehhhhch-hcccC-cccccc-----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 163 LNAIRRITKEN-GALLIFDEVMTGF-RLAYG-GAQEYF-----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 163 l~~i~~l~~~~-~~~li~De~~~~~-~~g~~-~~~~~~-----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+++++++|++| ++++|+||+|.++ ..+.. ...... +....+.||||.|+ +|+|+||+++++++++.+..
T Consensus 188 ~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~-- 265 (402)
T PRK06107 188 LRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINK-- 265 (402)
T ss_pred HHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHH--
Confidence 99999999998 9999999999876 43321 111111 12233568999998 89999999999999888773
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccch
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
.....+++++.+++.++..+++. .+.+.++.++..+..++.+.+.+.+. +.....+..+.++|+.+......
T Consensus 266 -~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~---- 338 (402)
T PRK06107 266 -LQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGK---- 338 (402)
T ss_pred -HHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeeccccccc----
Confidence 23334557788888888777741 13344443333333344444444333 32222334566677766321000
Q ss_pred hccccc---HHHHHHHHHH-HHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 313 AKKSET---TKFARFYRGM-LEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 313 ~~~~~~---~~~~~~~~~l-~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..+.. .+..+++..| .++||.+.++.. +++|+++..+++++++++++|++.++++
T Consensus 339 -~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 339 -TTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred -ccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 00011 1345677655 467999999843 3467888889999999999999998764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=210.33 Aligned_cols=325 Identities=14% Similarity=0.082 Sum_probs=199.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|.+.+++.+.+......+.+.....+|++.+++++ + .++++++|+|+++|+..++... ..++|.|++.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~ 121 (388)
T PRK07337 44 APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLAL--VERGDEVLMPD 121 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHh--cCCCCEEEEeC
Confidence 3567888888877643222223344566777777764 3 4688999999999999888765 35678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|........ ..+..+...+.....++. -|++++++.++ ++++++++...+|++|.+++.+ .
T Consensus 122 p~y~~~~~~~~-~~g~~~~~~~~~~~~~~~------------~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~-~ 184 (388)
T PRK07337 122 PSYPCNRHFVA-AAEGRPVLVPSGPAERFQ------------LTAADVEAAWG---ERTRGVLLASPSNPTGTSIAPD-E 184 (388)
T ss_pred CCchhhHHHHH-HcCCEEEEeecCCccCCc------------CCHHHHHhhcC---ccceEEEEECCCCCCCcCcCHH-H
Confidence 99987654333 333333222111111110 17899998886 3455555444445566656544 4
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccC-CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG-VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~-~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
+++|+++|++|++++|+||+|.++ ..+.......++ ....+.||||.++ +|+|+||+++++++++.+.. .....
T Consensus 185 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~---~~~~~ 261 (388)
T PRK07337 185 LRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEK---LAQNL 261 (388)
T ss_pred HHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHH---HHHHh
Confidence 999999999999999999999877 433221111111 1122458999998 89999999999888887763 11222
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhccccc
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
..+.+.+++.++..+++.- .....++.++..+..++.+.+.+.+.+... ..+..+.++|+++....- ++.
T Consensus 262 ~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~--------~~~ 332 (388)
T PRK07337 262 FICASALAQHAALACFEPD-TLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAH--------PAA 332 (388)
T ss_pred ccCCChHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccC--------CCC
Confidence 3356778888877666410 011122222222223333333333334322 234557788888742100 011
Q ss_pred HHHHHHHHHHH-HcCeeecCCCC-------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGML-EEGVYFAPSQF-------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 319 ~~~~~~~~~l~-~~Gi~~~~~~~-------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+..+++..|+ ++||.+.|+.. .++|+++..+++++.+++++|.+++
T Consensus 333 ~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 333 GDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 23467887754 67999988631 3456777778999999999998865
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=209.93 Aligned_cols=314 Identities=15% Similarity=0.146 Sum_probs=206.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
+++| .+|.+++++.+.+.....| +.....++++.++++++ +++++++++|+++++..++... ..+++.|++..+
T Consensus 42 ~~~~-~~~~~~~a~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l--~~~gd~vl~~~p 116 (367)
T PRK02731 42 NPLG-PSPKAIEAIRAAADELHRY--PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAY--LGPGDEVIYSEH 116 (367)
T ss_pred CCCC-CCHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEecC
Confidence 4566 4778999998887653333 44445789999999997 6789999999898888777655 346788999988
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|...... ....|..+.. ++..... .|++++++.++ +++++++++..++++|.+.+.++ +
T Consensus 117 ~y~~~~~~-~~~~g~~~~~--~~~~~~~-------------~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~-l 176 (367)
T PRK02731 117 GFAVYPIA-AQAVGAKPVE--VPAKDYG-------------HDLDAMLAAVT---PRTRLVFIANPNNPTGTYLPAEE-V 176 (367)
T ss_pred CHHHHHHH-HHHcCCeEEE--ecccCCC-------------CCHHHHHHHhC---CCCcEEEEeCCCCCCCcCCCHHH-H
Confidence 88654332 2333333322 1111111 17899998886 35666666666666787777322 5
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hccc-CccccccCCCcc---hhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~~~d---i~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
+++++.|+ +|+++|+||+|.++ ..+. ..........++ +.||||.++ +|+|+||+++++++++.+....
T Consensus 177 ~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~---- 251 (367)
T PRK02731 177 ERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVR---- 251 (367)
T ss_pred HHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHcc----
Confidence 55555443 49999999999877 4322 111222222222 348999998 8999999999999888876422
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.++..+.+++.++.+.++ ++.+.++.++..+..++.+.+.+.+.+... .+..++++|+.+. .
T Consensus 252 -~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~g~~~~i~~~-------------~ 313 (367)
T PRK02731 252 -QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGLEY-IPSVGNFILVDFD-------------D 313 (367)
T ss_pred -CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCCceEEEEECC-------------C
Confidence 234567788887766664 334445555555555555555555555432 2445778888762 2
Q ss_pred cHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|.++||.+.++.. ..+|+++. +.+++++++++|+++++.
T Consensus 314 ~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 314 GKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLAA 366 (367)
T ss_pred CCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 22357899999999999998743 24566654 678999999999998753
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=209.76 Aligned_cols=308 Identities=15% Similarity=0.048 Sum_probs=202.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEE-eCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~-~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++++ .+|.+++++.+.+.... .++.....++++.++++++ ..+++++ ++|+++++..+++.. ..+++.|++..
T Consensus 44 ~~~~-~~~~~~~~~~~~~~~~~--~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~--~~~gd~vlv~~ 118 (361)
T PRK00950 44 NPLG-PSPKAVEAIEKELSKIH--RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTF--IDPGDEVIIPT 118 (361)
T ss_pred CCCC-CCHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHh--cCCCCEEEEcC
Confidence 3455 57788999888776532 3344456899999999997 6788988 566667777777655 34677899888
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..... .....|..+...... ..+.. |++++++.++ ++++++++...++++|.+.+
T Consensus 119 p~y~~~~~-~~~~~g~~~~~~~~~-~~~~~-------------~~~~l~~~~~---~~~~~v~~~~p~nptG~~~~---- 176 (361)
T PRK00950 119 PTFSYYEI-SAKAHGAKPVYAKRE-EDFSL-------------DVDSVLNAIT---EKTKVIFLCTPNNPTGNLIP---- 176 (361)
T ss_pred CChHHHHH-HHHHcCCEEEEeecC-CCCCc-------------CHHHHHHHhc---cCCCEEEEeCCCCCCCCCcC----
Confidence 87765432 233334333221111 11111 7899998886 35666665555667788888
Q ss_pred HHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t 240 (368)
.+++.++|+++|+++|+||+|.+|..... ......+....+.||||.++ +|+|+||+++++++++.+.... ..
T Consensus 177 ~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~-----~~ 251 (361)
T PRK00950 177 EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAK-----TP 251 (361)
T ss_pred HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhc-----CC
Confidence 78899999999999999999987721111 11112222234569999999 8999999999999888776422 23
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
++.+.+++.++..+++ +.++.++..++.+..++.+.+.+. .. ..+..++++|+.+. ..+
T Consensus 252 ~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~---~~-~~~~~~~~i~~~~~--------------~~~ 310 (361)
T PRK00950 252 FSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP---FK-VYPSEANFVLVDVT--------------PMT 310 (361)
T ss_pred CCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC---ee-ECCCcceEEEEECC--------------CCC
Confidence 4567778777766664 334455555555555555544332 11 22344567777661 123
Q ss_pred HHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 321 FARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..++++.|.++||.+.++.. ..+|+++. +.+++++++++|+++++
T Consensus 311 ~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 311 AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIVE 361 (361)
T ss_pred HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHhC
Confidence 57899999999999987532 23566655 67899999999998763
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=208.00 Aligned_cols=313 Identities=15% Similarity=0.088 Sum_probs=197.6
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
+++| .++.+++++.+.+..... ++.....++++.++++++ +++++++++|+++++..+++.+ .++ .+++..+
T Consensus 30 ~~~~-~p~~~~~a~~~~~~~~~~--y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l---~~g-~viv~~P 102 (356)
T PRK08056 30 NPLG-MPVSLKRAIIDNLDCAER--YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL---KPR-RAMIVTP 102 (356)
T ss_pred CCCC-CCHHHHHHHHHHHHhccc--CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh---CCC-CEEEeCC
Confidence 3444 677899999887765433 344457899999999997 7889999999999999888754 344 4677777
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|..+. ......|..+...+.....++. . | +++.+.++ ++++++++...+|++|.+ .+++.+
T Consensus 103 ~y~~~~-~~~~~~g~~~~~v~~~~~~~~~-----------~-~-~~~~~~~~---~~~k~v~l~~p~NPTG~~-~~~~~~ 164 (356)
T PRK08056 103 GFAEYR-RALQQVGCEIRRYSLREADGWQ-----------L-T-DAILEALT---PDLDCLFLCTPNNPTGLL-PERQLL 164 (356)
T ss_pred CcHHHH-HHHHHcCCeEEEEecccccCCC-----------c-c-HHHHHhcc---CCCCEEEEeCCcCCCCCC-CCHHHH
Confidence 776543 2333334433222221111110 0 3 34444454 356666654445556664 456669
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccC--ccccccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCcccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~--~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~ 238 (368)
++|+++|++|++++|+||+|.+| ..+.. ...........+.||||.++ +|+|+||+++ ++++++.+... .
T Consensus 165 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~-----~ 239 (356)
T PRK08056 165 QAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQ-----Q 239 (356)
T ss_pred HHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh-----C
Confidence 99999999999999999999887 43321 11122222334568999999 9999999987 46677766531 1
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
..++.+.+++.++..+++ ++.+.++.++..+..++.+.+.+...+.....+..++++|+.+. .
T Consensus 240 ~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~-------------~- 302 (356)
T PRK08056 240 MPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRANYLFLRCE-------------R- 302 (356)
T ss_pred CCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCCcEEEEEcC-------------C-
Confidence 345667777777666653 33333343333344444444444333222223445677777652 1
Q ss_pred HHHHHHHHHHHHcCeeecCCCCC------ccccccCCCHHHHHHHHHHHHHHHh
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFE------AGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~------~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+..++++.|+++||.++++..+ ++|+++ .+.++.+.+++.|+++++
T Consensus 303 -~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~-~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 303 -PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI-RSAAENERLLAALRNVLT 354 (356)
T ss_pred -ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE-cCHHHHHHHHHHHHHHHc
Confidence 1367899999999999987432 344543 367899999999998764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=209.46 Aligned_cols=319 Identities=19% Similarity=0.184 Sum_probs=210.4
Q ss_pred CCceeccCCC--cHHHHHHHHHHHHcCC------C-CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH
Q 017633 1 MPQLIILFPS--YLQVLAALGETMKKGT------S-FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 71 (368)
Q Consensus 1 ~~~~~~~g~~--~~~v~~a~~~~~~~~~------~-~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~ 71 (368)
+.+.|+||.+ ++...+++.+++.+.. . .+.+.+...++++.++++++..+.++++ +|+.++..++...
T Consensus 105 ~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~-~G~~an~~~i~al-- 181 (489)
T PLN02483 105 LGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFG-MGYATNSTIIPAL-- 181 (489)
T ss_pred eecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHh--
Confidence 3578899996 4566677766666621 1 1235788999999999999866666665 5888887766554
Q ss_pred hcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-----C-----CCe
Q 017633 72 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-----K-----GEI 141 (368)
Q Consensus 72 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-----~-----~~~ 141 (368)
..++|.|++.+++|... ...+...| .++..++++|.+++++.+++. + .+.
T Consensus 182 ~~~Gd~Vi~d~~~h~s~-~~~~~~~G-------------------a~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k 241 (489)
T PLN02483 182 IGKGGLIISDSLNHNSI-VNGARGSG-------------------ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKK 241 (489)
T ss_pred CCCCCEEEEcchhhHHH-HHHHHHcC-------------------CeEEEEeCCCHHHHHHHHHhhhhccccccccCCce
Confidence 35677777766555543 33333322 334555566788887776531 1 123
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCCCc---ch--hhhhhhccCC
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTP---DL--TTLGKIIGGG 213 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~~~---di--~s~sK~~~~G 213 (368)
.++++++++++.|.+.+ +++|+++|++||++||+||+|+ +. ..|. +..+.+++.+ |+ .||||++++
T Consensus 242 ~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~-g~~~~~~v~~~~~dI~~~SfSKs~g~- 315 (489)
T PLN02483 242 IIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR-GVCELLGVDPADVDIMMGTFTKSFGS- 315 (489)
T ss_pred EEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCC-chHHhcCCCcccCcEEEEecchhccc-
Confidence 58888999999999888 9999999999999999999995 22 1222 2234444432 44 499999983
Q ss_pred ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 214 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-------GTYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 214 ~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
+.||+++++++++.+.........+ .+.++..++++.++++.+..+ +..++++++++++++.|++. +
T Consensus 316 -~GG~i~~~~~li~~l~~~~~~~~~~-~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~----G 389 (489)
T PLN02483 316 -CGGYIAGSKELIQYLKRTCPAHLYA-TSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM----G 389 (489)
T ss_pred -CceEEEcCHHHHHHHHHhCcccccc-CCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC----C
Confidence 3489999999998887422111112 134556666677788766421 23556777777777777764 3
Q ss_pred CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-------ccc--cccCCCHHHHHHH
Q 017633 287 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------AGF--TSLAHSSDDIQHT 357 (368)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-------~~~--~~~~~~~~~i~~~ 357 (368)
+.......++.+++.+. .+....++++.|+++||.+.+.+.+ .+| ++..++++|++++
T Consensus 390 ~~v~~~~~sp~~~l~l~-------------~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~ 456 (489)
T PLN02483 390 FEVLGDNDSPVMPIMLY-------------NPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKA 456 (489)
T ss_pred CcccCCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHH
Confidence 32111223455566553 2234568999999999999864332 223 4567899999999
Q ss_pred HHHHHHHHhh
Q 017633 358 ITAAEKVLRQ 367 (368)
Q Consensus 358 ~~~l~~~l~~ 367 (368)
+++|+++++.
T Consensus 457 l~~L~~~~~~ 466 (489)
T PLN02483 457 LEVISEVGDL 466 (489)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=215.87 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHcC---CCCCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 13 QVLAALGETMKKG---TSFGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 13 ~v~~a~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+++++.+.+... ...+.+.....+|++++++++. ++++|++|+|+++++..++..+.. .++|.|++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~~gD~Vlv~~ 170 (481)
T PTZ00377 92 DVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-DPSDGVMIPI 170 (481)
T ss_pred HHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-CCCCEEEECC
Confidence 5677776655542 2223344556777777777652 478999999999999999976631 3678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCC
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
++|..+...+... |..+...+.....++.. |++++++.++.. ..+++++++...+|++|.+++
T Consensus 171 P~y~~y~~~~~~~-g~~~v~v~~~~~~~~~~------------d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s- 236 (481)
T PTZ00377 171 PQYPLYSAAITLL-GGKQVPYYLDEEKGWSL------------DQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLT- 236 (481)
T ss_pred CCchhHHHHHHHc-CCEEEEEEeccccCCCC------------CHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCC-
Confidence 9998765444333 33332222211111110 789999998741 125665444444455666555
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcc-cCc-ccc----ccC-------CCcchhhhhhhc-c-CCccceeeee--
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQE----YFG-------VTPDLTTLGKII-G-GGLPVGAYGG-- 221 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g-~~~-~~~----~~~-------~~~di~s~sK~~-~-~G~~iG~v~~-- 221 (368)
.+.+++|+++|++||+++|+||+|.++ +.+ ..+ ... .+. ....+.||||.+ + +|||+||+++
T Consensus 237 ~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~ 316 (481)
T PTZ00377 237 RDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTN 316 (481)
T ss_pred HHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeC
Confidence 444999999999999999999999887 432 121 111 111 112345899985 6 8999999976
Q ss_pred -hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc--cC---CHHHHHHHHH---HHHHHHHHHHHHhc-CCceEE
Q 017633 222 -RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--EP---GTYEYLNKIT---GELTQGIIDAGKKA-GHAICG 291 (368)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~--~~---~~~~~~~~~~---~~l~~~l~~~~~~~-~~~~~~ 291 (368)
++++++.+.... ...++.+.+++.++..+++... +. .+.++.++.. +..++.+.+.+.+. ++....
T Consensus 317 ~p~~li~~l~~~~----~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~ 392 (481)
T PTZ00377 317 IPPEVREQIYKLA----SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQP 392 (481)
T ss_pred CCHHHHHHHHHHh----heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeec
Confidence 788888776321 2334678888888887774211 11 1222222222 22222333333334 333233
Q ss_pred eeccceEEEEeecC-CCcccchhcccccHHHHHHH-HHHHHcCeeecCCCC-------CccccccCCCHHHHHHHHHHHH
Q 017633 292 GYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQF-------EAGFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 292 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~~-------~~~~~~~~~~~~~i~~~~~~l~ 362 (368)
+..+.++|+.+.-. ..... ..........+++ ..|.++||.+.|+.. .++|+++..+++++++++++|+
T Consensus 393 p~gg~fl~~~~~l~~~~~~~--~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~ 470 (481)
T PTZ00377 393 VEGAMYAFPRIELPEKAIQE--AKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIK 470 (481)
T ss_pred CCeeEEEEeeccCchhhHHH--HHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHH
Confidence 33456666555311 00000 0000000123444 445567999998742 2467778888899999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
+++++
T Consensus 471 ~~~~~ 475 (481)
T PTZ00377 471 EFHES 475 (481)
T ss_pred HHHHH
Confidence 98864
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=203.76 Aligned_cols=304 Identities=12% Similarity=0.097 Sum_probs=203.7
Q ss_pred eeccCC-CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 4 LIILFP-SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 4 ~~~~g~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+++|. .+|.++++..+++++ |+.+.+.+.+|++.++++++ +++++++++||++|+..++..+. .+++.|+++
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~---~~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--~~gd~Vli~ 101 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLET---YVGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--PPGRKVVHY 101 (346)
T ss_pred cccccCCCChhHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--CCCCEEEEC
Confidence 567888 899999999999887 44567999999999999998 67899999999999999997662 467788764
Q ss_pred c--CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 82 E--GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
. ...|..+...+...|.++ + .++++++++. . ++++++++++ .+++|.+.+.
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~~-------------------~--~~~~l~~l~~----~-~~~~lIiitg-~s~~G~v~~~ 154 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAEY-------------------F--ESDELSELKK----I-DGTSLVVITG-STMDLKVVSE 154 (346)
T ss_pred CCCCCCchhHHHHHHHcCCEE-------------------e--ccCCHHHHhh----C-cCceEEEEEC-CCCCCcccCH
Confidence 2 345555444444444321 1 0125555432 1 3466777765 4677877664
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
++ +++|+++|++||++|++||+|..+ . .+. .....++...-+.||||++ +|+|+||+++++++++.+......
T Consensus 155 ~~-L~~i~~la~~~~~~livDEAy~~~~~~~~~~-~~~~~~~~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~- 230 (346)
T TIGR03576 155 ED-LKRVIKQAKSKEAIVLVDDASGARVRRLYGQ-PPALDLGADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQ- 230 (346)
T ss_pred HH-HHHHHHHHHHcCCEEEEECCccccccccCCC-CCHHHcCCcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcC-
Confidence 54 999999999999999999999643 1 121 1112233222345899965 578999999999999988753322
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
..++.++++++++.++++.+..+.+.+.++++.+.+.+.+.+ .+. .+..++++++++..
T Consensus 231 --~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~---~~~~~~f~~~~~~~------------ 289 (346)
T TIGR03576 231 --FGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNV---ERTPTGFVIKGVEE------------ 289 (346)
T ss_pred --cccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCC---CcCCCeEEEEeCCC------------
Confidence 233467888899999987543333455566666555555543 222 12234466665521
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCC-----CccccccCCCHH---HHHHHHHHHHHHH
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSD---DIQHTITAAEKVL 365 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~-----~~~~~~~~~~~~---~i~~~~~~l~~~l 365 (368)
........+.|.++||.+.++.. .++|+++..+++ ++++++++|++.+
T Consensus 290 -~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 290 -EKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred -CCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 11123444556678999999642 345677777665 7999999998865
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=209.44 Aligned_cols=322 Identities=11% Similarity=0.028 Sum_probs=197.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++++.+++.+.+.....|+ +.....+|++++++++ + .++++++++|+++++..++... ..++|.|++.+
T Consensus 50 ~~~~i~~~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~--~~~gd~Vlv~~ 126 (404)
T PRK09265 50 APDEILRDVIRNLPTAQGYS-DSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQAL--LNNGDEVLVPA 126 (404)
T ss_pred CCHHHHHHHHHHhhcCCCCC-CCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHh--CCCCCEEEEeC
Confidence 45578888877665433332 3444578888888876 3 5789999999999999888765 35678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|......... .|............++. .|++++++.++ ++++++++...+|++|.+.+.++
T Consensus 127 p~y~~~~~~~~~-~g~~~v~~~~~~~~~~~------------~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~~~~~- 189 (404)
T PRK09265 127 PDYPLWTAAVSL-SGGKPVHYLCDEEAGWF------------PDLDDIRSKIT---PRTKAIVIINPNNPTGAVYSKEL- 189 (404)
T ss_pred CCCcChHHHHHH-cCCEEEEEecccccCCC------------CCHHHHHHhcc---ccceEEEEECCCCCCCcCCCHHH-
Confidence 988865444333 33322211111111110 17899998886 34555444444555676666544
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-C--CCcchhhhhhhcc-CCccceeeee--hHH----HHHHhc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-G--VTPDLTTLGKIIG-GGLPVGAYGG--RRD----IMEMVA 230 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-~--~~~di~s~sK~~~-~G~~iG~v~~--~~~----~~~~~~ 230 (368)
+++|+++|++||+++|+||+|.++ ..+.. ...... . ....+.||||.++ +|+|+||+++ ++. +++.+.
T Consensus 190 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~ 269 (404)
T PRK09265 190 LEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLD 269 (404)
T ss_pred HHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHH
Confidence 999999999999999999999887 43321 111111 1 1223468999996 8999999985 343 333332
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHH---HHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecC
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTY---EYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~---~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (368)
. ....+++.|.+++.++.+++...+. +.+. +++.+++ +.+.+.+... +.....+..+.++|+.+...
T Consensus 270 ~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r----~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~ 341 (404)
T PRK09265 270 M----LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQR----DRAWELLNAIPGVSCVKPKGALYAFPKLDPK 341 (404)
T ss_pred H----HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----HHHHHHHhcCCCCcccCCCcceEEEEEeccc
Confidence 1 1123456778888888777741110 0111 1223333 3343433333 33223344566778776321
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. +...+...+.+.|.++||.+.|+.. .++|+.+..+++++++++++|++++.+
T Consensus 342 ~~--------~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 342 VY--------PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred cc--------CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 00 0012234567788899999988742 245677778999999999999998864
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=205.11 Aligned_cols=312 Identities=18% Similarity=0.137 Sum_probs=211.0
Q ss_pred ceeccCC-CcHHHHHHHHHHHHcC---C----CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFP-SYLQVLAALGETMKKG---T----SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~-~~~~v~~a~~~~~~~~---~----~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+..+||. .+|++++++.+++++. . .+....+...+|++.++++++. +.+++++||++|+..+++.+. .+
T Consensus 61 ~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~-~~~~~~~sG~~An~~~l~~l~--~~ 137 (407)
T PRK07179 61 SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF-ESCLLCQSGWAANVGLLQTIA--DP 137 (407)
T ss_pred cCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHhC--CC
Confidence 4456666 7899999999998763 1 1222335788999999999864 456789999999999998763 34
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
++.|++. ...|..........+. ++..++++|+++++++++.+ .+++++++++++++|
T Consensus 138 g~~v~~~-~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~--~~~lV~v~~v~n~tG 195 (407)
T PRK07179 138 NTPVYID-FFAHMSLWEGVRAAGA-------------------QAHPFRHNDVDHLRRQIERH--GPGIIVVDSVYSTTG 195 (407)
T ss_pred CCEEEEE-CCcCHHHHHHHHHCCC-------------------eEEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCC
Confidence 5666664 3344333222222221 22334445899999999742 478899999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchh---cccCccccccCCC--cch--hhhhhhccCCccceeeeehHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFR---LAYGGAQEYFGVT--PDL--TTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~---~g~~~~~~~~~~~--~di--~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
.+.+ +++|+++|++||++||+||+|+... .|.. ....+++. +|+ .|+||++++ |+|++++++++++
T Consensus 196 ~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~ 268 (407)
T PRK07179 196 TIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAG-LVAELGLTSRVHFITASLAKAFAG--RAGIITCPRELAE 268 (407)
T ss_pred cccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCc-hHHhcCCCCCCCEEEeechHhhhc--cCeEEEeCHHHHH
Confidence 9999 9999999999999999999996322 2221 23344542 365 468999974 7999999988877
Q ss_pred HhcCCCC-ccccccCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 228 MVAPAGP-MYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 228 ~~~~~~~-~~~~~t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
.+..... ..+++| .++..++++.++++.+... .+.+++.++++++++.|.++ ++. +.+.+.++++.+.
T Consensus 269 ~~~~~~~~~~~~~t--~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~----g~~--v~~~~~i~~l~~~-- 338 (407)
T PRK07179 269 YVPFVSYPAIFSST--LLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL----GYN--IRSESQIIALETG-- 338 (407)
T ss_pred HHHHhCcCeeeCCC--CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCC--CCCCCCEEEEEeC--
Confidence 7653221 222333 2445555566777766543 36678888888888888774 221 2234566666642
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeec----CCC---CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~---~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.......+.+.|.++||.+. +.. ...+|+ +..++++|+++++++|++++++
T Consensus 339 -----------~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 339 -----------SERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred -----------CHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 22345678889999999743 321 223444 5667999999999999998865
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=210.52 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=202.3
Q ss_pred CcHHHHHHHHHHHHcCCC-CCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTS-FGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+++++.+.+..... .+.+.....++++.++++++ ..+++++|+|+++|+..++.++. .+++.|++.
T Consensus 49 ~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~--~~gd~Vlv~ 126 (403)
T TIGR01265 49 TDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA--NPGANILVP 126 (403)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC--CCCCEEEEe
Confidence 346788888887765322 22245566778888888774 35789999999999999998763 467889999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|...... ....|.++.........+.. -|++++++.++. +++++++...+|++|.+++..+
T Consensus 127 ~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~---~~~~v~i~~p~NPtG~~~~~~~ 190 (403)
T TIGR01265 127 RPGFPLYDTR-AAFSGLEVRLYDLLPEKDWE------------IDLDGLEALADE---KTVAIVVINPSNPCGSVFSRDH 190 (403)
T ss_pred CCCchhHHHH-HHHcCCEEEEecCCcccCCc------------cCHHHHHHHhCc---CccEEEEecCCCCCCCCCCHHH
Confidence 9888764333 23333333221111111100 178999988863 4555555444555676555444
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccC---CCcchhhhhhhcc-CCccceeeeeh--HH-----HHHH
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGGR--RD-----IMEM 228 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~~--~~-----~~~~ 228 (368)
+++|+++|+++|+++|+||+|.++ ..+.. .....+. ....+.||||.++ +|+|+||++++ ++ +.+.
T Consensus 191 -~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~ 269 (403)
T TIGR01265 191 -LQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQG 269 (403)
T ss_pred -HHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHH
Confidence 999999999999999999999988 44422 1111111 1233568999987 89999999873 22 3333
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
+.. . ...+++++.+++.++..+++.. .+.+.++.++..+.-++.+.+.+... +.....+..+.++|+.+.....
T Consensus 270 ~~~---~-~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~ 344 (403)
T TIGR01265 270 LKN---L-LQRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELF 344 (403)
T ss_pred HHH---H-hhhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEecccccc
Confidence 321 1 1123466888888887777531 12333333333333334444444333 2222234567788887632110
Q ss_pred cccchhcccccHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+...+..++++.|+ ++||.+.++.. ..+|+++..+++++++++++|++++.+
T Consensus 345 --------~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 345 --------PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred --------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 00113467888764 67999999753 345777777889999999999998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=207.60 Aligned_cols=315 Identities=17% Similarity=0.127 Sum_probs=194.9
Q ss_pred cHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+.+++.+.+...... +.+.....+|++++++++ + .++++++|+|+++++..++.+.. .++|.|++..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vlv~~ 121 (386)
T PRK07550 44 PPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA--GAGDEVILPL 121 (386)
T ss_pred CHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--CCCCEEEEcC
Confidence 457788887766432222 223344556666666554 2 36899999999999998887663 4678899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE-EEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 161 (368)
++|...... ....|..+.........+.. .|++++++.++. ++++ +++.| +|++|.+++ .+
T Consensus 122 p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~~~~~l~~~~~~---~~~~v~~~~P-~NPtG~~~~-~~ 183 (386)
T PRK07550 122 PWYFNHKMW-LDMLGIRPVYLPCDEGPGLL------------PDPAAAEALITP---RTRAIALVTP-NNPTGVVYP-PE 183 (386)
T ss_pred CCCcchHHH-HHhcCCEEEEEecCCCcCCC------------CCHHHHHHHhcc---cCcEEEEeCC-CCCCCcccC-HH
Confidence 888776433 33334433222111111110 178999998873 4554 55554 455666554 55
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-Cc-ccccc---CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-GG-AQEYF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~-~~~~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+++|+++|++||+++|+||+|.+| ..+. .. ..... .....+.||||.++ +|+|+||+++++++++.+..
T Consensus 184 ~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~--- 260 (386)
T PRK07550 184 LLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEK--- 260 (386)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHH---
Confidence 5999999999999999999999887 3221 11 11111 12234569999999 89999999999888877663
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
.....+.+++.+++.++..+++.+.+ +...+.+.++++.+.+.|.+. .++ ...+..+.+.|+.+..
T Consensus 261 ~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~-~~~~~g~~~~~~~~~~-------- 328 (386)
T PRK07550 261 FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL---PGW-ELLASGAYFAYVRHPF-------- 328 (386)
T ss_pred HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-eeCCCceEEEEecCCC--------
Confidence 22334445677787777766653211 112333444444444444432 122 1223345566666521
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccC-CCHHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKV 364 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~-~~~~~i~~~~~~l~~~ 364 (368)
...+..+++..|+ ++||.+.++. ...+|+++. .+++++++++++|.++
T Consensus 329 ----~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 329 ----PDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred ----CCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 0233578888876 5799999863 234666666 4789999999999875
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=207.04 Aligned_cols=305 Identities=18% Similarity=0.167 Sum_probs=196.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.+.+.....| +.....+|++.+++.++ ++++|++|+|+++++..++... ..+++.|++.+++|..+
T Consensus 57 ~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l--~~~gd~Vli~~P~y~~~ 132 (370)
T PRK09105 57 PSPAARDAAARSAALSGRY--DLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF--TSPTAGLVTADPTYEAG 132 (370)
T ss_pred CCHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH--cCCCCEEEEeCCChHHH
Confidence 5778999998877543333 33348899999999998 7899999999999999999766 24678899999988776
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
... ....|.++....... .+. .|++++++.. ++++++++...+|++|.+.+ .+.++++++
T Consensus 133 ~~~-~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~~----~~~~~v~l~nP~NPTG~~~~-~~~l~~l~~ 192 (370)
T PRK09105 133 WRA-ADAQGAPVAKVPLRA-DGA-------------HDVKAMLAAD----PNAGLIYICNPNNPTGTVTP-RADIEWLLA 192 (370)
T ss_pred HHH-HHHcCCeEEEecCCC-CCC-------------CCHHHHHhcC----CCCCEEEEeCCCCCCCcCcC-HHHHHHHHH
Confidence 443 333344332221111 111 1778887652 24555554444555676665 444788877
Q ss_pred HHHHhCCEEEEehhhhchhcccCccccccC---CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 169 ITKENGALLIFDEVMTGFRLAYGGAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
.|+ +++++|+||+|.+|... ....+..+ ...-+.||||.+| +|+|+||+++++++++.+... ..+..+
T Consensus 193 ~~~-~~~~lIvDEaY~~f~~~-~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~------~~~~~~ 264 (370)
T PRK09105 193 NKP-AGSVLLVDEAYIHFSDA-PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF------GHNPLP 264 (370)
T ss_pred hCC-CCcEEEEECchHHhccC-cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc------CCCCcC
Confidence 654 59999999999776111 11111111 1223468999998 899999999999998887632 223467
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
.+++.++.++++ ++++.+..++..+..++.+.+.+...+.. ...+.++++++.+. .+..++
T Consensus 265 ~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~~-~~~~~~~f~~~~~~---------------~~~~~l 325 (370)
T PRK09105 265 VPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKGYK-CTPSQANCFMVDVK---------------RPAKAV 325 (370)
T ss_pred HHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCCCC-cCCCCCcEEEEeCC---------------CCHHHH
Confidence 777777766664 33454444444445555555544444432 22344555555431 124789
Q ss_pred HHHHHHcCeeecCCC---CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 325 YRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
++.|+++||.++... ..++|+++. +++++++++++|+++++
T Consensus 326 ~~~L~~~gI~v~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 326 ADAMAKQGVFIGRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred HHHHHHCCcEEecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 999999999994321 234566644 57889999999988763
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=205.14 Aligned_cols=317 Identities=21% Similarity=0.236 Sum_probs=210.3
Q ss_pred ceeccCCC-cHHHHHHHHHHHHcC-CCCC------CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFPS-YLQVLAALGETMKKG-TSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~~-~~~v~~a~~~~~~~~-~~~~------~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.+++|++ +|++++++.+++.+. ..+. ...+...++++.++++++. +++++++||++|+..++... ..+
T Consensus 45 ~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~-~~~ii~~~~~~a~~~~~~~l--~~~ 121 (393)
T TIGR01822 45 ANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT-EDTILYASCFDANGGLFETL--LGA 121 (393)
T ss_pred CCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEECchHHHHHHHHHHh--CCC
Confidence 34567885 889999999988762 2221 1245678999999999975 35666678999999877655 356
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~ 151 (368)
+|.|++.++.|+.. .......+... +.++..|++++++.+++. ..++++++++++++
T Consensus 122 gd~vi~~~~~~~s~-~~~~~~~~~~~-------------------~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~ 181 (393)
T TIGR01822 122 EDAIISDALNHASI-IDGVRLCKAKR-------------------YRYANNDMADLEAQLKEARAAGARHRLIATDGVFS 181 (393)
T ss_pred CCEEEEeccccHHH-HHHHHhcCCce-------------------EEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCcc
Confidence 78888877655543 33223222211 112234899999999852 12678899988888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch-h-cccCccccccCC--Ccchh--hhhhhccCCccceeeeehHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~-~-~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~ 224 (368)
++|.+.+ +++|+++|++||++||+||+|. ++ . .+. ......+. .+|++ |+||+++ |+|+||++++++
T Consensus 182 ~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~~~di~~~s~sK~l~-g~r~G~~~~~~~ 255 (393)
T TIGR01822 182 MDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGR-GSHELCGVMGRVDIITGTLGKALG-GASGGFTTARKE 255 (393)
T ss_pred CCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-chHHhcCCCCCCeEEEEEChHHhh-CCCcEEEEeCHH
Confidence 8898888 9999999999999999999993 43 1 111 11122332 24554 8999986 579999999998
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
+++.+........ .+.+.++..++++.++++.+.. ++..++++++++++++.|++. ++.. ..+.++++.+.+
T Consensus 256 ~~~~l~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~i~~- 328 (393)
T TIGR01822 256 VVELLRQRSRPYL-FSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA----GFDI-KPADHPIIPVML- 328 (393)
T ss_pred HHHHHHHhCccce-ecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCCC-CCCCCCEEEEEe-
Confidence 8887764221111 1123355666667778776643 345677777878777777663 3221 112234444433
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++..+..++++.|+++||.+..... ..+| ++..++++|+++++++|++++++
T Consensus 329 ------------~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 329 ------------YDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred ------------CCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1233467899999999999974221 1233 46778999999999999998764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=205.96 Aligned_cols=306 Identities=14% Similarity=0.083 Sum_probs=196.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
.+|.+++++.+.+......+|+.....+|++.++++++ .. +++++++|+++++..++.++ ..+++.|++..++|..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~--~~~gd~vlv~~P~y~~ 117 (356)
T PRK04870 40 LPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC--AKPGATVLAPEPGFVM 117 (356)
T ss_pred CCHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCHHH
Confidence 67789999998886533333444566899999999997 43 58999998888888888755 2467889999988876
Q ss_pred CchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 88 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
... .....|..+...+... .+.. |+++++++++.+ +++++++...+|++|.+++ .+.+++|+
T Consensus 118 ~~~-~~~~~g~~~~~i~~~~-~~~~-------------d~~~l~~~~~~~--~~~~v~l~~p~NPtG~~~~-~~~~~~i~ 179 (356)
T PRK04870 118 YRM-SAKLAGLEFVGVPLTA-DFTL-------------DLPAMLAAIAEH--RPALVFLAYPNNPTGNLFD-DADVERII 179 (356)
T ss_pred HHH-HHHHcCCEEEEecCCC-CCCC-------------CHHHHHHHhhcC--CCCEEEEcCCCCCCCCCCC-HHHHHHHH
Confidence 433 3333444333222211 1111 799999998742 5666666544556677666 33377777
Q ss_pred HHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 168 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
++| +.++|+||+|.+| ...........+....+.|||| ++ +|+|+||+++++++++.+.... ..++.+.
T Consensus 180 ~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~-----~~~~~~~ 250 (356)
T PRK04870 180 EAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR-----PPYNVNV 250 (356)
T ss_pred HHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc-----CCCcCCH
Confidence 777 7899999999877 3211111122222334569999 77 7999999999999888876422 2345677
Q ss_pred HHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 246 LAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
+++.++..+++.... +...++++++++.+.+.|+ ..+.....+..+.++|+.+. +..++
T Consensus 251 ~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 310 (356)
T PRK04870 251 LTQATALFALEHVDVLDAQAAQLRAERTRLAAALA----ALPGVTVFPSAANFILVRVP----------------DAAAV 310 (356)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECCCCCeEEEEECC----------------CHHHH
Confidence 887776666642110 1123334444444444443 33211233445667777641 13678
Q ss_pred HHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 325 YRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+.|.++||.++++.. .++|+++. +.+++++++++|++++
T Consensus 311 ~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 311 FDGLKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred HHHHHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 8999999999988632 23455544 6789999999998764
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=210.05 Aligned_cols=327 Identities=15% Similarity=0.086 Sum_probs=191.3
Q ss_pred CcHHHHHHHHHHHHcC----CCC-CCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKKG----TSF-GAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~----~~~-~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+|.+.+++.+.+... ..+ +.+.....+|++++++++ + ++++|++|+|+++++...+.+ ..++|.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~---~~~gd~ 124 (409)
T PRK07590 48 LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDI---FGPDNT 124 (409)
T ss_pred CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHh---cCCCCE
Confidence 3467888888877652 112 235566677888888764 3 578999999999998875443 357789
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++.+++|......+...+..+.. . .... ..+++.++.+.-+.++..+.+ ++++++++...+|++|.++
T Consensus 125 V~v~~P~Y~~~~~~~~~~g~~~~~-~---~~~~-----~~~~~~v~~~~~~~~~~d~~~--~~~k~i~l~nP~NPTG~~~ 193 (409)
T PRK07590 125 IAVTDPVYPVYVDTNVMAGRTGEA-N---EDGR-----YSGIVYLPCTAENNFVPELPE--EKVDIIYLCFPNNPTGTVL 193 (409)
T ss_pred EEEeCCCCcchHHHHHHcCCcccc-c---cccc-----ccceeEeecccccCCcccCcc--cCceEEEEeCCCCCcCCcC
Confidence 999999998876544443332110 0 0000 000111111000000000111 2566665543344556555
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhc
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~ 230 (368)
+ .+.+++|+++|++||++||+||+|.+| ..+.. ...... +....+.||||.++ +|+|+||+++++++++.+.
T Consensus 194 s-~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~ 272 (409)
T PRK07590 194 T-KEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTS 272 (409)
T ss_pred C-HHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhcc
Confidence 4 555999999999999999999999888 43321 111111 12334569999998 9999999999988876321
Q ss_pred CCC--------Ccccccc-CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 231 PAG--------PMYQAGT-LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 231 ~~~--------~~~~~~t-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
... ....... .+.+.+++.++.++++.- ...+.++.++..+..++.+.+.+...+.....+..+.++|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~ 351 (409)
T PRK07590 273 DGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE-GKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVK 351 (409)
T ss_pred ccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEE
Confidence 000 0011122 246778887776666411 012333333333333333444443344332223356677887
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+.. ..+..+++..|++ +||.+.|+.. .++|+++..+++++++++++|.+++
T Consensus 352 ~~~-------------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 352 TPD-------------GMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKAL 409 (409)
T ss_pred CCC-------------CCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence 632 2224678887774 6999998742 2456676678999999999998764
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=207.96 Aligned_cols=300 Identities=14% Similarity=0.067 Sum_probs=187.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.++.+++++.+.... ..|. +.....++++.+++++ + +++++++|+|+++++..++.++ ...+++.|++.
T Consensus 41 ~~~~~~~~~~~~~~~-~~Y~-~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l-~~~~gd~Vl~~ 117 (364)
T PRK07865 41 VPPVIQEALAAAADA-PGYP-TTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLL-GLGPGDVVVIP 117 (364)
T ss_pred CCHHHHHHHHHHHhh-CCCC-CccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHH-cCCCCCEEEEC
Confidence 356778887665432 2332 2233445555555554 3 3689999999999998876544 12467889999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|....... ...|.++ +.++ ++++++. ++++++++++.+|++|.+++.++
T Consensus 118 ~p~y~~~~~~~-~~~g~~~-------------------~~~~--~~~~l~~------~~~~~v~~~~p~NPtG~~~~~~~ 169 (364)
T PRK07865 118 ELAYPTYEVGA-RLAGATV-------------------VRAD--SLTELGP------QRPALIWLNSPSNPTGRVLGVDH 169 (364)
T ss_pred CCCcccHHHHH-HhcCCEE-------------------EecC--ChhhCCc------ccceEEEEcCCCCCCCccCCHHH
Confidence 98887653332 2223322 1121 3333322 35677777665666777666554
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCcc-ccc------cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY------FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~~~------~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
+++|+++|++||+++|+||+|.++ ..+.... ... ......+.||||.++ +|+|+||+++++++++.+..
T Consensus 170 -~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~- 247 (364)
T PRK07865 170 -LRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLE- 247 (364)
T ss_pred -HHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHH-
Confidence 999999999999999999999887 4332211 111 011233568999997 89999999999998887763
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
......++.+.+.+.++.++++ ++++.++.++..+..++.+.+.+.+.+.....+..+.++|+.+.
T Consensus 248 --~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~--------- 313 (364)
T PRK07865 248 --VRKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPALEAAGFRVDHSEAGLYLWATRG--------- 313 (364)
T ss_pred --HHHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCccEEEEEeCC---------
Confidence 1223445667888877766654 33333333444444444444444444533223334445666541
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~ 362 (368)
.+..++++.|.++||.+.++.. .++|+++..+++++++++++|+
T Consensus 314 ------~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 314 ------EDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred ------CCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 1135678889999999988631 2356777678999999999885
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=203.83 Aligned_cols=306 Identities=14% Similarity=0.109 Sum_probs=196.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.++.+++++.+.+..... ++.....+|+++++++++ +++++++|+|+++++..+++.+ . .+.|++..++|+..
T Consensus 33 ~p~~~~~a~~~~~~~~~~--Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~---~-~~~v~i~~P~y~~~ 106 (354)
T PRK06358 33 VPESLKQAITENLDKLVE--YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT---K-PKKVLILAPTFAEY 106 (354)
T ss_pred CCHHHHHHHHHHHHhhhc--CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh---C-CCcEEEecCChHHH
Confidence 367899999887755333 344456899999999997 7899999999999999888764 2 35788989988866
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEE-EEcccCCCCCcccCCHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI-ILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
...+ ...|.++.........++. . | +++.+.+. ++++++ +++| +|++|.++ +.+.+++|+
T Consensus 107 ~~~~-~~~g~~~~~~~~~~~~~~~-----------~-d-~~~~~~~~---~~~~~v~~~~P-~NPtG~~~-~~~~~~~l~ 167 (354)
T PRK06358 107 ERAL-KAFDAEIEYAELTEETNFA-----------A-N-EIVLEEIK---EEIDLVFLCNP-NNPTGQLI-SKEEMKKIL 167 (354)
T ss_pred HHHH-HHcCCeeEEEeCccccCCC-----------c-c-HHHHHhhc---cCCCEEEEeCC-CCCCCCcc-CHHHHHHHH
Confidence 4433 3333333222221111110 0 5 44444444 235554 5555 45556555 455599999
Q ss_pred HHHHHhCCEEEEehhhhch-hcccCc-ccc---ccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCcccccc
Q 017633 168 RITKENGALLIFDEVMTGF-RLAYGG-AQE---YFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~-~~g~~~-~~~---~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t 240 (368)
++|++|++++|+||+|.+| ..+... ... .......+.||||.++ +|+|+||+++ ++.+++.+.... ..
T Consensus 168 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~-----~~ 242 (354)
T PRK06358 168 DKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMR-----EP 242 (354)
T ss_pred HHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC-----CC
Confidence 9999999999999999888 443211 111 1122234569999999 9999999987 467777776322 24
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
++.+.+++.++.++++ ++.+.++..+..+..++.+.+.+.+.+......+.++++|+.+. +
T Consensus 243 ~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~-------------~--- 303 (354)
T PRK06358 243 WSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFFKLE-------------K--- 303 (354)
T ss_pred CcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEEEcC-------------c---
Confidence 5678888888777774 22333333333333344444444333222223345667777652 1
Q ss_pred HHHHHHHHHHcCeeecCCCCC------ccccccCCCHHHHHHHHHHHHHHH
Q 017633 321 FARFYRGMLEEGVYFAPSQFE------AGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~------~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
..++++.|+++||.+.++... ++|++ ..+++++++++++|++++
T Consensus 304 ~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls-~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 PIDLRKELLKKGILIRSCSNYRGLDENYYRVA-VKSREDNKKLLKALEVIL 353 (354)
T ss_pred hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE-eCCHHHHHHHHHHHHHHh
Confidence 268999999999999997432 23343 447789999999998875
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=203.85 Aligned_cols=312 Identities=20% Similarity=0.193 Sum_probs=211.0
Q ss_pred eccCC-CcHHHHHHHHHHHHcCC-C------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 5 IILFP-SYLQVLAALGETMKKGT-S------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 5 ~~~g~-~~~~v~~a~~~~~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++|+ .+|++++++.+++.... . .....+...++++.++++++. +..+++++|++++..+++.. ..+++
T Consensus 48 ~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-~~~i~~~~g~~~~~~~l~~~--~~~gd 124 (385)
T PRK05958 48 DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA-ERALLFSSGYAANLAVLTAL--AGKGD 124 (385)
T ss_pred CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-CcEEEECcHHHHHHHHHHHh--CCCCC
Confidence 35787 67999999999887621 1 112456788999999999874 45566667999988777654 34567
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++.++ +|+.........+. +++.++..|++++++.++..++++++++++++++++|..
T Consensus 125 ~V~~~~~-~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~ 184 (385)
T PRK05958 125 LIVSDKL-NHASLIDGARLSRA-------------------RVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDL 184 (385)
T ss_pred EEEEeCc-cCHHHHHHHHhcCC-------------------ceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCc
Confidence 7776554 45544443333332 223334448999999997543357788888888888877
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccc--cCCCcc---hhhhhhhccCCccceeeeehHHHHHH
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEY--FGVTPD---LTTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~--~~~~~d---i~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
.+ +++|+++|++||+++|+||+|... . .|... ... ....++ +.|+||++++ +.||+++++++.+.
T Consensus 185 ~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~ 257 (385)
T PRK05958 185 AP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILVGTLGKALGS--SGAAVLGSETLIDY 257 (385)
T ss_pred CC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEEEechhhccc--CCcEEEcCHHHHHH
Confidence 77 999999999999999999999532 2 22221 111 222344 5689999973 33888888888877
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
+...... +..+.+.++++++++.++++.+.+. .+.+++.++++++++.|++. ++. ...+.+.++++.+.
T Consensus 258 ~~~~~~~-~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~---- 327 (385)
T PRK05958 258 LINRARP-FIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL----GFQ-LMDSQSAIQPLIVG---- 327 (385)
T ss_pred HHHhCcc-ceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCC-cCCCCCCEEEEEeC----
Confidence 6532211 2233456778888888888877553 46677777777777777764 222 22345667777652
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCC-------CCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
...+..++.+.|+++||.+.+++ ...+|+ +..++++++++++++|++++
T Consensus 328 ---------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 328 ---------DNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred ---------CHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 22346789999999999998632 123454 44579999999999998764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=204.74 Aligned_cols=315 Identities=23% Similarity=0.267 Sum_probs=207.7
Q ss_pred eccCC-CcHHHHHHHHHHHHcCC-CC------CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 5 IILFP-SYLQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 5 ~~~g~-~~~~v~~a~~~~~~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++|+ .+|++++++.+++.+.. .+ ....+...++++++++.++..+.+++++ |++++..+++.. ..++|
T Consensus 51 ~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~ts-G~~a~~~~~~~l--~~~gd 127 (397)
T PRK06939 51 NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSS-CFDANGGLFETL--LGKED 127 (397)
T ss_pred CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcC-hHHHHHHHHHHh--CCCCC
Confidence 34677 68889999999887631 11 1234677889999999887556666665 689999888655 35678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCC
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNS 153 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~ 153 (368)
.|++.++.|+..... ....+.. .+.++..|++++++.+++. ..+++++++.++++++
T Consensus 128 ~vi~~~~~~~~~~~~-~~~~~~~-------------------~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~ 187 (397)
T PRK06939 128 AIISDALNHASIIDG-VRLCKAK-------------------RYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMD 187 (397)
T ss_pred EEEEEhhhhHHHHHH-HHhcCCc-------------------eEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCC
Confidence 888888776654322 2222221 2222334889999888742 1267888888888888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch-h-cccCccccccCC--Ccchh--hhhhhccCCccceeeeehHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~-~-~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
|...+ +++|.++|++||++||+||+|+ ++ . .+. ......++ .+|++ |+||+++ |+|+||++++++++
T Consensus 188 G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~-g~r~G~v~~~~~~~ 261 (397)
T PRK06939 188 GDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-GTVEHFGVMDRVDIITGTLGKALG-GASGGYTAGRKEVI 261 (397)
T ss_pred CCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-CHHHHcCCCCCCcEEEEECHHHhC-ccCceEEEeCHHHH
Confidence 87666 9999999999999999999994 43 2 222 12222333 23554 8999996 45999999999888
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
+.+........ .+.+.++..++++.++++.+.+ +.+.+++.++++.+++.|++. ++.. ..+.+.++++.+
T Consensus 262 ~~l~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~-~~~~~~~~~~~~--- 332 (397)
T PRK06939 262 DWLRQRSRPYL-FSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA----GFTL-GPGEHPIIPVML--- 332 (397)
T ss_pred HHHHHhCcccc-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCCc-CCCCCCEEEEEE---
Confidence 88764221111 1113345556677777776643 345667777777777777654 2211 122344443332
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCC-------CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+...+..++++.|+++||.+.+.. ...+|+ +..++++++++++++|++++++
T Consensus 333 ----------~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 333 ----------GDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred ----------CCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 122346789999999999987532 123443 4568999999999999998865
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=205.71 Aligned_cols=309 Identities=12% Similarity=0.045 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHH----hhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVI----SAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.++.+.+++.+.......| .+.....+|+++++ +.++ .+++|++|+|+++++..++.++...++++.|++..
T Consensus 38 ~~~~~~~a~~~~~~~~~~Y-~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~ 116 (374)
T PRK05839 38 TPKFIQDALKNNAHLLNKY-PKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPN 116 (374)
T ss_pred CCHHHHHHHHHHhhccCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECC
Confidence 3567788877665432223 22333445555554 4444 57899999999999988776542113578888988
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..+...+. ..|..+...+.....++. . |+++. .+. +++++++...+|++|.+++ .+.
T Consensus 117 P~y~~~~~~~~-~~g~~v~~v~~~~~~~~~---------~---d~~~~--~~~----~~k~v~i~nP~NPTG~~~s-~~~ 176 (374)
T PRK05839 117 PFYQIYEGAAI-ASRAKVLLMPLTKENDFT---------P---SLNEK--ELQ----EVDLVILNSPNNPTGRTLS-LEE 176 (374)
T ss_pred CCchhhHHHHH-hcCCEEEEeecccccCCc---------C---Ccchh--hhc----cccEEEEeCCCCCcCcccC-HHH
Confidence 88887654443 334333222221111110 0 22222 122 4566665544455666565 455
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccc-c--------ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~-~--------~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~ 231 (368)
+++|+++|++||+++|+||+|.++ ..+..... . ..+....+.||||.++ +|+|+||+++++++++.+..
T Consensus 177 l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~ 256 (374)
T PRK05839 177 LIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKA 256 (374)
T ss_pred HHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHH
Confidence 999999999999999999999887 32222111 1 1122334569999987 89999999999988887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
.. ....++.+.+.+.++.+++. ++.+.+++++..+..++.+.+.+ +.. .+..+.++|+.+.
T Consensus 257 ~~---~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~fi~~~~~-------- 317 (374)
T PRK05839 257 YR---TYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPATFYVWLPVD-------- 317 (374)
T ss_pred HH---hhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeEEEEEeCC--------
Confidence 21 22234557777777665553 34444444444444444444432 221 3455677777652
Q ss_pred hhcccccHHHHHHHHHHHH-cCeeecCCC--------CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 312 DAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~--------~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...++++.|++ +||.+.|+. ..++|+++..+++++.+++++|+++++
T Consensus 318 --------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 318 --------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred --------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 13678888875 899999862 135677777789999999999999875
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=203.41 Aligned_cols=274 Identities=14% Similarity=0.050 Sum_probs=180.0
Q ss_pred HHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCC
Q 017633 36 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 115 (368)
Q Consensus 36 ~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (368)
.+|++.++++++ .++|++|+|+++++..++.+ .+++.|++.+++|......+... |.
T Consensus 52 ~~Lr~~ia~~~~-~~~I~it~Gs~~al~~~~~~----~~gd~v~v~~P~y~~~~~~~~~~-g~----------------- 108 (330)
T PRK05664 52 DGLEAAARAYYG-APQLLPVAGSQAAIQALPRL----RAPGRVGVLSPCYAEHAHAWRRA-GH----------------- 108 (330)
T ss_pred HHHHHHHHHHhC-CCCEEECcCHHHHHHHHHHc----cCCCEEEEcCCChHHHHHHHHHc-CC-----------------
Confidence 799999999985 47999999999999887532 36789999999998764333332 22
Q ss_pred CCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccc
Q 017633 116 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 194 (368)
Q Consensus 116 ~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~ 194 (368)
+++.++ ++++++.++ +...+++++|+ |++|.+++.++ +++|+++|+++|+++|+||+|.++ ........
T Consensus 109 --~~~~v~---~~~~~~~~~---~~~~v~l~nP~-NPTG~~~s~~~-l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~ 178 (330)
T PRK05664 109 --QVRELD---EAEVEAALD---SLDVLVVVNPN-NPTGRRFDPAR-LLAWHARLAARGGWLVVDEAFMDNTPQHSLAAC 178 (330)
T ss_pred --eEEEec---hhhHhhhhc---CCCEEEEeCCc-CCCCCccCHHH-HHHHHHHHHhcCCEEEEECCcccCCCccccccc
Confidence 223332 345666664 23346777775 45566555444 999999999999999999999876 22222222
Q ss_pred cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 017633 195 EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 273 (368)
Q Consensus 195 ~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 273 (368)
........+.||||.++ +|+|+||+++++++++.+.... .+++.+.+++.++.++++ +..+.++.++..+.
T Consensus 179 ~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~L~---~~~~~~~~~~~~~~ 250 (330)
T PRK05664 179 AHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELL-----GPWTVSGPTRWLAQAALA---DTPWQRRQRERLLA 250 (330)
T ss_pred ccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHh---ChHHHHHHHHHHHH
Confidence 11112234569999999 9999999999999988887321 234567788888777775 22223333333333
Q ss_pred HHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-CCccccccCCCHH
Q 017633 274 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSD 352 (368)
Q Consensus 274 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~~~~~~~~~~~~ 352 (368)
.++.+.+.+.+.+.. ...+...++|+.. + +..++++.|.++||.+...+ .+++|+++..+.+
T Consensus 251 ~r~~l~~~L~~~~~~-~~~~~~~f~~~~~-------------~---~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~~~~ 313 (330)
T PRK05664 251 ASQRLAALLRRHGLT-PAGGCALFQWVRT-------------E---DAAALHEFLARRGILTRLFEQPASLRFGLPADEA 313 (330)
T ss_pred HHHHHHHHHHHCCCc-ccCCcceEEEEec-------------C---CHHHHHHHHHHCCeEEEECCCCCeEEEECCCCHH
Confidence 344444444444432 1122234555543 1 24788999999999998753 2356676665778
Q ss_pred HHHHHHHHHHHHHhh
Q 017633 353 DIQHTITAAEKVLRQ 367 (368)
Q Consensus 353 ~i~~~~~~l~~~l~~ 367 (368)
+++++.+.|+++.++
T Consensus 314 ~~~~l~~al~~~~~~ 328 (330)
T PRK05664 314 DWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999887654
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=204.80 Aligned_cols=307 Identities=15% Similarity=0.111 Sum_probs=193.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.+.+.... ..|+.....+|+++++++++ +++++++|+|+++++..+++... .++|.|++.+++|...
T Consensus 38 ~~~~~~~a~~~~~~~~~-~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~--~~gd~vlv~~P~y~~~ 114 (353)
T PRK05387 38 PSPKVLEAIRAALGDDL-RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF--NHDRPLLFPDITYSFY 114 (353)
T ss_pred CCHHHHHHHHHHhhhhh-hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEEeCCCHHHH
Confidence 36788999988765422 22344456899999999997 78899999999999999997663 4678899999888544
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
.......|.++...++.. .+.. |++++++ ....+++++| +|++|.+.+ .+++.+
T Consensus 115 -~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~------~~~~v~~~~P-~NPtG~~~~----~~~~~~ 168 (353)
T PRK05387 115 -PVYAGLYGIPYEEIPLDD-DFSI-------------DVEDYLR------PNGGIIFPNP-NAPTGIALP----LAEIER 168 (353)
T ss_pred -HHHHHHcCCEEEEeecCC-CCCC-------------CHHHHHh------cCCEEEEeCC-CCCCCCCCC----HHHHHH
Confidence 333344444332221111 1101 6777753 1334455555 555677776 444444
Q ss_pred HHHHh-CCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 169 ITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 169 l~~~~-~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+++++ ++++|+||+|.+| ........+......-+.||||.++ +|+|+||+++++++++.+..... ...+++.+.
T Consensus 169 l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~--~~~~~~~~~ 246 (353)
T PRK05387 169 ILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKN--SFNSYPLDR 246 (353)
T ss_pred HHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhc--cCCCCCcCH
Confidence 44444 9999999999876 2111111112222233568999999 89999999999998888763221 113456788
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
+++.++.++++ +.++.++.+++....++.+.+.+.+.++. ..+..++++|+.+. ..+..+++
T Consensus 247 ~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~--------------~~~~~~~~ 308 (353)
T PRK05387 247 LAQAGAIAAIE---DEAYFEETRAKVIATRERLVEELEALGFE-VLPSKANFVFARHP--------------SHDAAELA 308 (353)
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCe-ECCCcCcEEEEECC--------------CCCHHHHH
Confidence 88888777664 22333333333333444444444444432 23344556666542 12347889
Q ss_pred HHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 326 RGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 326 ~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+.|.++||.+.+.+. ..+|+++. +++++++++++|++++.
T Consensus 309 ~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 309 AKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 999999999976532 24566654 67999999999999875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=209.08 Aligned_cols=305 Identities=12% Similarity=0.057 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCcccc
Q 017633 33 LLENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 103 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 103 (368)
....+|++++++++. ++++|++|+|+++++..++.+.. .++|.|++..++|.+....+....|..+...
T Consensus 86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v 163 (468)
T PLN02450 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--EPGDAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (468)
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--CCCCEEEECCCCCCchHHHHhhcCCcEEEEE
Confidence 344567777766652 46889999999999998887663 4688999999988876443332334433222
Q ss_pred CCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 017633 104 GLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180 (368)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~D 180 (368)
+....+++. .|++++++++++. ..+++++++...+|++|.+++ .+.+++|+++|++||+++|+|
T Consensus 164 ~~~~~~~~~------------~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s-~e~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 164 HCSSSNGFQ------------ITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTT-RTELNLLVDFITAKNIHLISD 230 (468)
T ss_pred ecCCccCCc------------CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccC-HHHHHHHHHHHHHCCcEEEEE
Confidence 221112211 1678888887641 135665555544445565554 555999999999999999999
Q ss_pred hhhhch-hcccCc-c-ccc-----------cCCCcchhhhhhhcc-CCccceeeeehH-HHHHHhcCCCCccccccCCCC
Q 017633 181 EVMTGF-RLAYGG-A-QEY-----------FGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 181 e~~~~~-~~g~~~-~-~~~-----------~~~~~di~s~sK~~~-~G~~iG~v~~~~-~~~~~~~~~~~~~~~~t~~~~ 244 (368)
|+|.++ +.+..+ . ... .+....+.||||.++ +|+|+||+++++ .+.+.+.... .....+
T Consensus 231 E~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~-----~~~~~s 305 (468)
T PLN02450 231 EIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS-----SFGLVS 305 (468)
T ss_pred ccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh-----hcCCCC
Confidence 999876 443221 1 111 111223568999998 999999999874 4555554211 112357
Q ss_pred HHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 245 PLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
.+++.++...++ ++. +.+..+++.+.-++.+.+.+.+.+.....+..|.++|+.+..... . .....
T Consensus 306 ~~~Q~a~~~~L~---~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~-~------~~~~~ 375 (468)
T PLN02450 306 SQTQYLLSALLS---DKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLK-S------NTFEA 375 (468)
T ss_pred HHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcC-c------CCchH
Confidence 778887766664 332 222333333333344444444455443334456688887742110 0 01122
Q ss_pred HHHHHHHHHH-cCeeecCCCC------CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLE-EGVYFAPSQF------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~-~Gi~~~~~~~------~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
..++.+.|++ +||.+.|+.. .++|+++. .+++++++++++|++++.+
T Consensus 376 ~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~ 430 (468)
T PLN02450 376 EMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVES 430 (468)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 3457777765 7999999842 24677777 4899999999999998854
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=205.94 Aligned_cols=318 Identities=15% Similarity=0.132 Sum_probs=197.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC-----C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV-----P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
++.+.+++.+.......| .+.....++++.+++++ + +.+++++|+|+++++..++... ..+++.|++.++.
T Consensus 45 ~~~~~~a~~~~~~~~~~Y-~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vl~~~p~ 121 (397)
T PRK07568 45 PEVFFEAIKNYDEEVLAY-SHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI--CDPGDEILVPEPF 121 (397)
T ss_pred CHHHHHHHHHHhcCCcCc-CCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 456778777654332223 34455677888887775 2 5789999999999999988765 3467889998887
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|... .......|..+.........++ ...+++++++.++. +++++++...++++|.+.+.++ ++
T Consensus 122 y~~~-~~~~~~~g~~~~~v~~~~~~g~-----------~~~~~~~l~~~~~~---~~~~v~i~~p~NPtG~~~~~~~-~~ 185 (397)
T PRK07568 122 YANY-NGFATSAGVKIVPVTTKIEEGF-----------HLPSKEEIEKLITP---KTKAILISNPGNPTGVVYTKEE-LE 185 (397)
T ss_pred CccH-HHHHHHcCCEEEEeecCcccCC-----------CCCCHHHHHHhcCc---cceEEEEECCCCCCCccCCHHH-HH
Confidence 7654 3333344443322211111111 01157888888863 4566655444455666555444 99
Q ss_pred HHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-C---CCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCcc
Q 017633 165 AIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-G---VTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMY 236 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-~---~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~ 236 (368)
+|+++|+++|+++|+||+|.+| ..+.. .....+ + ....+.||||.++ +|+|+||+++ ++++++.+....
T Consensus 186 ~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~--- 262 (397)
T PRK07568 186 MLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLC--- 262 (397)
T ss_pred HHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHh---
Confidence 9999999999999999999888 54431 111111 1 1223459999999 7999999987 467776654211
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
. .+++.+.+.+.++..+++.. +.+.+++++..+..++.+.+.+.+.+ .....+..+.++|+.+.
T Consensus 263 ~-~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~------------ 327 (397)
T PRK07568 263 Q-ARLSPPTLEQIGAAALLDTP--ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP------------ 327 (397)
T ss_pred h-ccCCCCcHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecC------------
Confidence 1 24567778888877776521 22333333333333333444333332 22222333445666652
Q ss_pred cccHHHHHHHHHHHH------cCeeecCCCC---------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGMLE------EGVYFAPSQF---------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~------~Gi~~~~~~~---------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. .+..+++++|++ +||.+.|+.. .++|+++..+++++++++++|++++++
T Consensus 328 -~-~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 328 -V-DDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEK 392 (397)
T ss_pred -C-CCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 1 124678888875 5999998631 245677777899999999999998865
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=210.58 Aligned_cols=302 Identities=13% Similarity=0.051 Sum_probs=186.5
Q ss_pred CCCChhHHHHHHHHHhhCC-------CCCeEE--EeCChHHHHHHHHHHHHH-hcCCceEEEEcCCCCCCchhhhhhcCC
Q 017633 29 GAPCLLENVLAEMVISAVP-------SIEMVR--FVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGHADPFLVKAGS 98 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~-------~~~~v~--~~~~gt~a~~~al~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~ 98 (368)
|.+.....+|++++++++. .+++|+ .|+||++|+..++.++.. ..++|.|++.+++|+++...+ ...|.
T Consensus 68 Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~-~~~G~ 146 (404)
T PTZ00376 68 YLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIF-KSAGL 146 (404)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH-HHcCC
Confidence 4456777888888888752 346787 488999999988754322 256889999999998875443 34444
Q ss_pred CccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 017633 99 GVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 177 (368)
Q Consensus 99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~l 177 (368)
.+...+. +....-. |++.+++.+++..++++++++...+|++|.+++ ++.+++|+++|++|++++
T Consensus 147 ~~~~v~l~~~~~~~~-------------d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s-~~~~~~l~~~a~~~~~~i 212 (404)
T PTZ00376 147 NVKEYRYYDPKTKGL-------------DFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPT-EEQWKEIADVMKRKNLIP 212 (404)
T ss_pred ceeeccccCcccCCc-------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEE
Confidence 3332222 1111111 799999999754334555555555555666555 444999999999999999
Q ss_pred EEehhhhch-hccc---Cccc---cc-cCCCcchhhhhhhcc-CCccceee---eehHHHHHHhcCC-CCccccccCCCC
Q 017633 178 IFDEVMTGF-RLAY---GGAQ---EY-FGVTPDLTTLGKIIG-GGLPVGAY---GGRRDIMEMVAPA-GPMYQAGTLSGN 244 (368)
Q Consensus 178 i~De~~~~~-~~g~---~~~~---~~-~~~~~di~s~sK~~~-~G~~iG~v---~~~~~~~~~~~~~-~~~~~~~t~~~~ 244 (368)
|+||+|.++ ..+. .... .. ......+.||||.++ +|+|+||+ ++++++++.+... .........+.+
T Consensus 213 i~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 292 (404)
T PTZ00376 213 FFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPP 292 (404)
T ss_pred EEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999887 4321 1011 11 112334569999999 99999998 4677654433210 011111222446
Q ss_pred HHHHHHHHHHHHHHc-cCCH-------HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 245 PLAMTAGIHTLKRLK-EPGT-------YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~-~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.+++.++..+++.-. .+.+ .++++++++.+.+.|++.....++....+..+.++|+.+
T Consensus 293 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~-------------- 358 (404)
T PTZ00376 293 IHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGL-------------- 358 (404)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCC--------------
Confidence 778888777764210 0112 233445555555555443100011111233445556543
Q ss_pred ccHHHHHHHHHHHHc-CeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLEE-GVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~-Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++++|.++ ||.+.|++ |+++. .+.+++++++++|++++.-
T Consensus 359 ----~~~~~~~L~~~~~v~v~p~~----Ris~~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 359 ----TKEQVERLIEKYHIYLLDNG----RISVAGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred ----CHHHHHHHHHhCCEeecCCC----eEEEeccCHHhHHHHHHHHHHHHhc
Confidence 15788888877 99999984 77665 7999999999999998753
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=202.94 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=195.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|++++++.++......|+ .....++++.++++++ +.+++++++|+++++..+++.+ ..+++.|++.++.|...
T Consensus 33 ~~~~~~~a~~~~~~~~~~y~--~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l--~~~gd~v~~~~p~y~~~ 108 (346)
T TIGR01141 33 PPPKAKEALRAEADKLHRYP--DPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF--LEPGDAVLVPPPTYSMY 108 (346)
T ss_pred CCHHHHHHHHHhHHHhhcCC--CCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCHHHH
Confidence 57789999998875433343 3334899999999997 6789999999999998887655 24678899988877533
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
. ......|.++........ +.. |++++++.+. +++++++++..+|++|.+.+ ++++.+
T Consensus 109 ~-~~~~~~g~~~~~~~~~~~-~~~-------------d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~----~~~~~~ 166 (346)
T TIGR01141 109 E-ISAKIHGAEVVKVPLDED-GQL-------------DLEDILVAID---DKPKLVFLCSPNNPTGNLLS----RSDIEA 166 (346)
T ss_pred H-HHHHHcCCeEEEeccCCC-CCC-------------CHHHHHHhcC---CCCCEEEEeCCCCCCCCCCC----HHHHHH
Confidence 2 223333443332211111 111 8899988764 45677776666667787777 455555
Q ss_pred HHHH--hCCEEEEehhhhch-hcccCcc-ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 169 ITKE--NGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 169 l~~~--~~~~li~De~~~~~-~~g~~~~-~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
+|+. +++++|+||+|.++ ..+.... ........-+.|+||.++ +|+|+||+++++++++.+.... .+++.
T Consensus 167 l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-----~~~~~ 241 (346)
T TIGR01141 167 VLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVR-----APFNL 241 (346)
T ss_pred HHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhcc-----CCCCC
Confidence 5554 49999999999877 3221111 111111122358999997 7999999999999988887422 24566
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
+++++.++.++++.. ++.++.++..+..++.+.+.+.+. +.. ..+..+.++|+.+. . +..
T Consensus 242 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~g~~~~~~~~-------------~--~~~ 302 (346)
T TIGR01141 242 SRLAQAAAIAALRDD---DFIEKTVEEINAERERLYDGLKKLPGLE-VYPSDANFVLIRFP-------------R--DAD 302 (346)
T ss_pred CHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCE-ECCCcCCEEEEecC-------------C--CHH
Confidence 788888877766532 133333343344444444444333 322 33345667777652 1 357
Q ss_pred HHHHHHHHcCeeecCCCC-----CccccccCCCHHHHHHHHHHHH
Q 017633 323 RFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 323 ~~~~~l~~~Gi~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~ 362 (368)
++++.|.++||.+.++.. ..+|+++. ++++++++++.|+
T Consensus 303 ~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 303 ALFEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred HHHHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 899999999999998753 34566654 7899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=204.04 Aligned_cols=279 Identities=16% Similarity=0.115 Sum_probs=176.8
Q ss_pred CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 30 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
||+....+|++.++++++ ..++|++|+|+++++..++.+. .+ +++++..++|..+...+... |..+...++..
T Consensus 37 Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~---~~-~~vv~~~P~y~~y~~~~~~~-G~~v~~vp~~~- 110 (332)
T PRK06425 37 YPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYI---NV-GNIIIVEPNFNEYKGYAFTH-GIRISALPFNL- 110 (332)
T ss_pred CcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh---CC-CcEEEeCCChHHHHHHHHHc-CCeEEEEeCCc-
Confidence 567778999999999998 7889999999999999988643 33 35777788887764444333 33322211110
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~ 187 (368)
.. .|.+.++ + .++++++++..+|++|.+++ .+.+++|+++|++||+++|+||+|.+| .
T Consensus 111 ~~--------------~~~~~l~----~--~~~k~v~l~nP~NPTG~~~s-~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~ 169 (332)
T PRK06425 111 IN--------------NNPEILN----N--YNFDLIFIVSPDNPLGNLIS-RDSLLTISEICRKKGALLFIDEAFIDFVP 169 (332)
T ss_pred cc--------------CcHHHHh----h--cCCCEEEEeCCCCCcCCccC-HHHHHHHHHHHHHcCCEEEEecchhcccc
Confidence 00 0333332 2 14455554444455666555 444999999999999999999999988 4
Q ss_pred cccCcccc---ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC--
Q 017633 188 LAYGGAQE---YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-- 261 (368)
Q Consensus 188 ~g~~~~~~---~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-- 261 (368)
.+...... ..+....+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++. . ...+
T Consensus 170 ~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~-----~~~~~~~~~~~~l~-~---~~~~~~ 240 (332)
T PRK06425 170 NRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKIT-----EPWSVCDPAIDFIR-S---IDLDYV 240 (332)
T ss_pred ccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcC-----CCCccCHHHHHHHH-H---hhhHHH
Confidence 33111111 1122334569999999 9999999999999988887422 23344444433221 1 1111
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC
Q 017633 262 --GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 339 (368)
Q Consensus 262 --~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~ 339 (368)
...+.++++++.+.+.|+ +.++....++.++++|+.+. +..++++.|+++||.+.++.
T Consensus 241 ~~~~~~~~~~~r~~l~~~L~----~~g~~~~~~~~g~f~~~~~~----------------~~~~~~~~l~~~gi~v~~~~ 300 (332)
T PRK06425 241 AKHSLDIMENERSYLINNLE----AMGFRAAGDPSANFITFMIP----------------DAHDFYSYLLKNGILVRLLD 300 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCEECCCCCceEEEEEcC----------------CHHHHHHHHHHCCeEEEECC
Confidence 223344444444444444 34432222345677777651 24789999999999999874
Q ss_pred CC------ccccccCCCHHHHHHHHHHHHHHH
Q 017633 340 FE------AGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 340 ~~------~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+ ++|+++. +.+++++++++|++++
T Consensus 301 ~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 301 DYECLGEQYIRIAIR-RRSFNIKLVNALRNFL 331 (332)
T ss_pred CCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 32 3445533 6789999999999876
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=205.50 Aligned_cols=318 Identities=14% Similarity=0.116 Sum_probs=202.8
Q ss_pred CcHHHHHHHHHHHHcC---CCCCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 10 SYLQVLAALGETMKKG---TSFGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.++.+++++.+.+... ...+.+.....++++.++++++ +++++++++|+++++..++... ..+++.|+
T Consensus 47 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vl 124 (394)
T PRK06836 47 PPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAI--LNPGDEVI 124 (394)
T ss_pred CCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHh--cCCCCEEE
Confidence 3557888887766542 1223344556667777777642 4789999999999999988765 24678899
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+.+++|..+. ......|.++...+........ |+++++++++ ++++++++.+.++++|.+++.
T Consensus 125 i~~p~~~~~~-~~~~~~g~~v~~v~~~~~~~~~-------------d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~ 187 (394)
T PRK06836 125 VFAPYFVEYR-FYVDNHGGKLVVVPTDTDTFQP-------------DLDALEAAIT---PKTKAVIINSPNNPTGVVYSE 187 (394)
T ss_pred EcCCCCccHH-HHHHHcCCEEEEEecCCccCcC-------------CHHHHHhhcC---cCceEEEEeCCCCCCCcCCCH
Confidence 9888887753 3333344443332221111111 7999999986 357777776666667776665
Q ss_pred HHHHHHHHHHHHH------hCCEEEEehhhhch-hcccC--ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHH-
Q 017633 160 PDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM- 228 (368)
Q Consensus 160 ~~~l~~i~~l~~~------~~~~li~De~~~~~-~~g~~--~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~- 228 (368)
++ +++|+++|++ ||+++|+||+|.++ ..+.. .....++....+.||||.++ +|+|+||+++++++.+.
T Consensus 188 ~~-~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~ 266 (394)
T PRK06836 188 ET-LKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDAD 266 (394)
T ss_pred HH-HHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhH
Confidence 55 9999999999 89999999999887 43321 11122233334568999999 89999999998765332
Q ss_pred --hcCCCCccc-cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 229 --VAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 229 --~~~~~~~~~-~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
......... ......+.+.+.++...++ +....+.++++++.+.+.|++ .+.....+..+.++|+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~----~g~~~~~~~gg~~~~~~~~-- 337 (394)
T PRK06836 267 DLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTE----LGFECVKPQGAFYLFPKSP-- 337 (394)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHh----CCCEeecCCceEEEEEeCC--
Confidence 110000001 1123456666666554443 222234455555555555544 3433233334556666541
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
. .+..++++.|.++||.+.++.. ..+|+++..+++++++++++|+++++++
T Consensus 338 -----------~-~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 338 -----------E-EDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEY 392 (394)
T ss_pred -----------C-CCHHHHHHHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 1 1346788889999999999842 3466776689999999999999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=218.03 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=202.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CC---CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI---EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~---~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
.+|.+++++.+.+..........+...++++++++.++ +. +++++++|+++++..++.++. .++|.|++..++|
T Consensus 711 pPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl--~pGD~VLVp~PtY 788 (1082)
T PLN02672 711 VPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV--QEGGTLCFPAGSN 788 (1082)
T ss_pred CCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc--CCCCEEEEeCCCh
Confidence 67789999988776533322234568899999999876 32 489999988888877777653 4678999999988
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
..+...+. ..|..+...+.....++.. |++++++++++. .+..+++++|++|++|.+++ .+.+++
T Consensus 789 ~~Y~~~a~-~~Ga~vv~Vpl~~e~gf~l------------D~d~Le~al~~~-~~~~I~L~nPnhNPTG~v~S-~eeLe~ 853 (1082)
T PLN02672 789 GTYVSAAK-FLKANFRRIPTKSSDGFKL------------TAKTLASTLETV-KKPWVYISGPTINPTGLLYS-NSEIEE 853 (1082)
T ss_pred HHHHHHHH-HcCCEEEEEecccccCCCC------------CHHHHHHHhccC-CCCEEEEECcCCCCcCccCC-HHHHHH
Confidence 87654433 3344333222211122211 789999998632 13457777787555666555 455999
Q ss_pred HHHHHHHhCCEEEEehhhhch-hcccCc---ccc----cc-C-----CCcchhhhhhhcc-CCccceeeeeh-HHHHHHh
Q 017633 166 IRRITKENGALLIFDEVMTGF-RLAYGG---AQE----YF-G-----VTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMV 229 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~-~~g~~~---~~~----~~-~-----~~~di~s~sK~~~-~G~~iG~v~~~-~~~~~~~ 229 (368)
|+++|++||++||+||+|.++ +.+... ... .+ . ....+.||||.++ +|+|+||++++ +++++.+
T Consensus 854 Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l 933 (1082)
T PLN02672 854 ILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAF 933 (1082)
T ss_pred HHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHH
Confidence 999999999999999999877 544221 010 11 0 1123458999999 89999999985 5578877
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE-------YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
..... .......++.++.++++++.. .+..+.+ .++++++.+.+.| .+.+.....+..+.++|+.+
T Consensus 934 ~~~~~--~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L~e~L----~~~Gi~v~~PeGGFfLwl~l 1006 (1082)
T PLN02672 934 HSAPG--LSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERLKETL----EACGWDVLEPQGGISMVAKP 1006 (1082)
T ss_pred HHhhh--hcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCeEecCCcEEEEEEEc
Confidence 63211 111112233343333332210 1122322 3444444444444 34454333344455666654
Q ss_pred ecCC---Cc-ccchhcccccHHHHHHHHHHHHc-CeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 303 TEGP---VY-NFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 303 ~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.... ++ .+.........++.++++.|+++ ||.+.||.. .++|+++..+++++++++++|+++.+
T Consensus 1007 ~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1007 SAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred cccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 2110 00 00000000012357899999876 999999743 34678888899999999999998764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=200.33 Aligned_cols=311 Identities=20% Similarity=0.180 Sum_probs=205.6
Q ss_pred eeccCC-CcHHHHHHHHHHHHcCC-CC------CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFP-SYLQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~-~~~~v~~a~~~~~~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
.+++|+ .+|++++++.+++.... .+ ....+...++++.++++++..+.++++ +|++++..+++.+ ..++
T Consensus 24 ~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~-~G~~~~~~~l~~~--~~~g 100 (360)
T TIGR00858 24 NDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFS-SGYLANVGVISAL--VGKG 100 (360)
T ss_pred CCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEEC-chHHHHHHHHHHh--CCCC
Confidence 357896 78999999999887621 11 112466788999999998755555555 5788888776654 3467
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g 154 (368)
+.|++.++.|. .........+.+ +..++..|++++++.++++. ++++++++.++++++|
T Consensus 101 d~v~~~~~~~~-~~~~~~~~~g~~-------------------~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G 160 (360)
T TIGR00858 101 DLILSDALNHA-SLIDGCRLSGAR-------------------VRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDG 160 (360)
T ss_pred CEEEEEccccH-HHHHHHHhcCCc-------------------eEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCC
Confidence 77777665544 333333333322 22233348999999998642 3578888888888888
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-CccccccCCCcc-----hhhhhhhccCCccceeeeehHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD-----LTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~~~d-----i~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
...+ +++|.++|++||+++|+||+|+.+ .... ......+++.++ +.|+||++++ +.||+++++++++
T Consensus 161 ~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~--~gG~~~~~~~~~~ 234 (360)
T TIGR00858 161 DIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS--YGAYVAGSQALID 234 (360)
T ss_pred CCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc--cCcEEEcCHHHHH
Confidence 7777 999999999999999999999643 2111 111223333332 5699999984 3389999888887
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.+...... ...+.+.++.+++++.++++.+.. +.+.+++.++++++.+.|++. +.. .....+.++|+.+.
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~--- 305 (360)
T TIGR00858 235 YLINRART-LIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL----GFT-LMPSCTPIVPVIIG--- 305 (360)
T ss_pred HHHHhCcc-ceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc----CCc-cCCCCCCEEEEEeC---
Confidence 76532211 112224566777777788876643 245677777777777777663 322 22345667777652
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Ccccc--ccCCCHHHHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAE 362 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~~--~~~~~~~~i~~~~~~l~ 362 (368)
...+..++++.|.++||.+.++.. ..+|+ +..++++|+++++++|+
T Consensus 306 ----------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 306 ----------DNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred ----------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 223467899999999999975321 23454 44569999999998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=208.16 Aligned_cols=300 Identities=13% Similarity=0.107 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHh---cCCceEEE-EcCCCCCCchhhhhhc---CC
Q 017633 33 LLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAF---TGRERIIK-FEGCYHGHADPFLVKA---GS 98 (368)
Q Consensus 33 ~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~---~~~~~vi~-~~~~~~~~~~~~~~~~---~~ 98 (368)
....+|++.+++++ + .+++|++|+|+++++..++.+.... ..++.|++ ..++|+++........ +.
T Consensus 74 ~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~ 153 (416)
T PRK09440 74 QGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSY 153 (416)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeec
Confidence 44567777777765 3 5789999999999999998766421 13578888 6899988654322111 01
Q ss_pred CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 017633 99 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 178 (368)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li 178 (368)
+......+. +. .... -|+++++ +. ++++++++.+.+|++|.+++ .+.+++|+++|++||+++|
T Consensus 154 ~~~~~~~~~-~~---------~~~~-~d~~~l~--~~---~~~~~i~l~~P~NPTG~~~s-~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 154 RPNIELLPE-GQ---------FKYH-VDFEHLH--ID---EDTGAICVSRPTNPTGNVLT-DEELEKLDALARQHNIPLL 216 (416)
T ss_pred ccccccccc-cc---------cccC-CCHHHcc--cC---CCceEEEEecCCCCCCccCC-HHHHHHHHHHHHHcCCcEE
Confidence 000000000 00 0000 1677776 22 34555555444555676665 4459999999999999999
Q ss_pred EehhhhchhcccCc-ccc--ccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHH
Q 017633 179 FDEVMTGFRLAYGG-AQE--YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 255 (368)
Q Consensus 179 ~De~~~~~~~g~~~-~~~--~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l 255 (368)
+||+|..+.....+ ... ..+....+.||||...+|+|+||+++++++++.+... ......+.+.+.+.++..++
T Consensus 217 ~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~~l~~~~~~~---~~~~~~~~s~~~q~~~~~~l 293 (416)
T PRK09440 217 IDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADEEIIEALSNM---NGIISLAPGRLGPAIAAEMI 293 (416)
T ss_pred EeCCccccCCCcchhhcCccccCCeEEEecccccCCCcceEEEEeCCHHHHHHHHHH---HHHhccCCCcHHHHHHHHHh
Confidence 99999643111100 000 0122334679999744899999999999988887632 22233466888888877776
Q ss_pred HHHccCCHHH--------HHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 256 KRLKEPGTYE--------YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 256 ~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
+ +.++.+ .++++++.+++.|.+.+...+.....+..+.++|+.+... ..+..++.+.
T Consensus 294 ~---~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~------------~~~~~~~~~~ 358 (416)
T PRK09440 294 E---SGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDL------------PITTEELYQR 358 (416)
T ss_pred c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCC------------CCCHHHHHHH
Confidence 5 333322 2334444444555443322222222344567888876321 1234678888
Q ss_pred HHHcCeeecCCCC-------------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 328 MLEEGVYFAPSQF-------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 328 l~~~Gi~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
|.++||.+.|+.. .++|+++..+++++++++++|++++.+
T Consensus 359 l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 359 LKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred HHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 9999999998631 145677766899999999999998854
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=207.07 Aligned_cols=304 Identities=12% Similarity=0.067 Sum_probs=186.3
Q ss_pred hHHHHHHHHHhhC----C-----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccC
Q 017633 34 LENVLAEMVISAV----P-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 104 (368)
Q Consensus 34 ~~~~l~~~l~~~~----~-----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (368)
...+|++++++++ + ++++|++|+|+++|++.++.++. .++|.|++..+.|.+....+....|.++...+
T Consensus 95 G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~--~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~ 172 (496)
T PLN02376 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA--DPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVP 172 (496)
T ss_pred CcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC--CCCCEEEECCCCccchHHHHHhhCCCEEEEEe
Confidence 3345555555543 2 46899999999999999997663 56789999999998865433323344433222
Q ss_pred CCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 105 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
+...++.. .|++++++++.+ ...+++++++...+|++|.+++ .+.+++|+++|++||++||+||
T Consensus 173 ~~~~~~~~------------~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s-~e~l~~L~~~a~~~~i~lI~DE 239 (496)
T PLN02376 173 CSSSDNFK------------LTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLD-KDTLTNLVRFVTRKNIHLVVDE 239 (496)
T ss_pred CCCCccCc------------CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEc
Confidence 21111110 068888766532 1235665555444445666555 5559999999999999999999
Q ss_pred hhhch-hcccCc-ccccc----C---CCcc----hhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHH
Q 017633 182 VMTGF-RLAYGG-AQEYF----G---VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPL 246 (368)
Q Consensus 182 ~~~~~-~~g~~~-~~~~~----~---~~~d----i~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~ 246 (368)
+|.++ +.+..+ +.... . ..++ +.||||.|+ +|+|+||+++ ++.+.+.+.... .....+.+
T Consensus 240 iY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~-----~~~~vs~~ 314 (496)
T PLN02376 240 IYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS-----SFGLVSSQ 314 (496)
T ss_pred CccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh-----hcCCCCHH
Confidence 99886 444221 11111 1 1122 458999998 9999999988 566666544211 11235677
Q ss_pred HHHHHHHHHHHHccCCHH-HHH---HHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 247 AMTAGIHTLKRLKEPGTY-EYL---NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 247 ~~~a~~~~l~~~~~~~~~-~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
.+.++.+.++ ++++. +++ +++.+..++.+.+.+.+.+.....+..|.++|+++....... .......
T Consensus 315 ~Q~a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~------~~~~~e~ 385 (496)
T PLN02376 315 TQLMLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDR------NSFESEI 385 (496)
T ss_pred HHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccC------CchhHHH
Confidence 7777655553 44442 222 333333333444444444544334556788898874321000 0111236
Q ss_pred HHHHHHHHc-CeeecCCCC------CccccccC-CCHHHHHHHHHHHHHHHh
Q 017633 323 RFYRGMLEE-GVYFAPSQF------EAGFTSLA-HSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 323 ~~~~~l~~~-Gi~~~~~~~------~~~~~~~~-~~~~~i~~~~~~l~~~l~ 366 (368)
++++.|+++ ||.+.||.. +++|+++. ++++++++++++|++++.
T Consensus 386 ~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 386 ELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred HHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 788888865 999999743 24567776 588999999999999874
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=202.49 Aligned_cols=312 Identities=16% Similarity=0.131 Sum_probs=197.8
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++ .+|.+.+++.+.......| ++....+|++.++++++ +.+++++|+|+++++..++... ..++|.|++..+
T Consensus 46 ~~~~-~~~~~~~al~~~~~~~~~Y--~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~--~~~gd~vli~~P 120 (371)
T PRK05166 46 NPLG-PSPAVRRAFADIAELLRLY--PDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAV--LRPGDRVVTLYP 120 (371)
T ss_pred CCCC-CCHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCC
Confidence 3444 5677888887754443333 33223589999999987 7789999999999999888655 356788999888
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|..... .....|..+.........++ |++++++.++. +++++++...+|++|.+++.+ .+
T Consensus 121 ~y~~~~~-~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~~---~~~~v~l~~p~NPtG~~~~~~-~~ 181 (371)
T PRK05166 121 SFPLHED-YPTMMGARVERVTVTPDLGF--------------DLDALCAAVAR---APRMLMFSNPSNPVGSWLTAD-QL 181 (371)
T ss_pred ChHHHHH-HHHHcCCeEEEeecCCCCCC--------------CHHHHHHhhhc---CCCEEEEeCCCCCCCCCCCHH-HH
Confidence 8875432 22333433322111111111 78999988873 445555544455567666544 48
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc----CCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPM 235 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~ 235 (368)
++|+++|++ ++++|+||+|.++ ..+.. ...... .....+.||||.++ +|+|+||+++ ++++++.+....
T Consensus 182 ~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~-- 258 (371)
T PRK05166 182 ARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVR-- 258 (371)
T ss_pred HHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhc--
Confidence 888888864 8899999999887 32221 111111 11233568999999 9999999765 677877775322
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
..++.+.+++.++.+++. ++++.++..+..+..++.+.+.+.+.+.. ..+..+.++|+.+.
T Consensus 259 ---~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g~~-~~p~~g~fl~~~~~------------ 319 (371)
T PRK05166 259 ---TPFNVNGAAQAAALAALD---DEEHLAKGVALALAERERLKKELAEMGYR-IAPSRANFLFFDAR------------ 319 (371)
T ss_pred ---cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCcCe-eCCCcCCEEEEeCC------------
Confidence 234668888877776664 23344443333333444444444444443 23455677777642
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+..++++.|+++||.+.++.. .++|+++. +.++++++.+.|++++.
T Consensus 320 ---~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~-~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 320 ---RPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG-SPEENDHFVAALDKVLE 370 (371)
T ss_pred ---CCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 1247899999999999998743 23455544 56678888888887653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=202.34 Aligned_cols=299 Identities=16% Similarity=0.083 Sum_probs=184.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|.+++++.+.... ..|. ......+|++++++++ + +++++++|+|+++++..++.++. ..++|.|++.
T Consensus 35 ~~~~~~~~~~~~~~~-~~Y~-~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~-~~~gd~Vl~~ 111 (357)
T TIGR03539 35 VPPLIRAALAAAADA-PGYP-QTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG-LGPGDTVVIP 111 (357)
T ss_pred CCHHHHHHHHHHHhh-CCCC-cccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc-CCCCCEEEEC
Confidence 456788887765432 2222 2233345555555543 3 36899999999999988776441 2467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|.+..... ...|.++ +.++ +++.++ . ++++++++++.+|++|.+.+.++
T Consensus 112 ~p~y~~~~~~~-~~~g~~~-------------------~~v~--~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~ 163 (357)
T TIGR03539 112 ELAYPTYEVGA-LLAGATP-------------------VAAD--DPTELD---P---VGPDLIWLNSPGNPTGRVLSVDE 163 (357)
T ss_pred CCCcHHHHHHH-HhcCCEE-------------------eccC--ChhhcC---c---cCccEEEEeCCCCCcCccCCHHH
Confidence 99997654332 2323322 1111 333322 1 35677777666666777666555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCcc-ccc------cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY------FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~~~------~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
+++|.++|++||+++|+||+|.++ ..+.... .+. .....-+.||||.++ +|+|+||+++++++++.+...
T Consensus 164 -~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~ 242 (357)
T TIGR03539 164 -LRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTV 242 (357)
T ss_pred -HHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHH
Confidence 999999999999999999999877 4332211 110 011223458999997 899999999999888877632
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
.....++.+.+++.++.++++ ++.+.++.++..+..++.+.+.+.+.+.....+..+.++|+...
T Consensus 243 ---~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~~~~~~~~~~~--------- 307 (357)
T TIGR03539 243 ---RKHAGLMVPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLWATRG--------- 307 (357)
T ss_pred ---HhhcccCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEEEECC---------
Confidence 222345677888887766664 22333333333333334444444444433233334445565531
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAA 361 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l 361 (368)
.+..++.+.|.++||.+.++.. ..+|+++..+++++++++++|
T Consensus 308 ------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 308 ------EDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred ------CCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 1246788899999999999742 345677777889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=197.68 Aligned_cols=314 Identities=19% Similarity=0.208 Sum_probs=207.4
Q ss_pred eccCC-CcHHHHHHHHHHHHcCCC----C---CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 5 IILFP-SYLQVLAALGETMKKGTS----F---GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 5 ~~~g~-~~~~v~~a~~~~~~~~~~----~---~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
+++|+ .+|.+++++.+++.+... + ....+...++++++++.++..+.++++ +|++++..++... ..+++
T Consensus 42 ~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~-sG~~a~~~a~~~~--~~~gd 118 (385)
T TIGR01825 42 NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQ-SGFNTNQGVLSAL--LRKGD 118 (385)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEEC-cHHHHHHHHHHHh--CCCCC
Confidence 45788 899999999998875311 1 123567889999998887754555555 6899999888765 34667
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGF 155 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~ 155 (368)
.|++.++ +|+.........+... ..++..|++++++.+++.. +++++++++++++++|.
T Consensus 119 ~vi~~~~-~~~~~~~~~~~~g~~~-------------------~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 119 IVLSDEL-NHASIIDGLRLTKATK-------------------KIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred EEEEEcc-ccHHHHHHHHhcCCce-------------------EEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCC
Confidence 6666554 4554433333322211 1122237888998887542 36888889988888898
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccccCCCc----chhhhhhhccCCccceeeeehHHHHHH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTP----DLTTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~~~~~~----di~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
+.+ +++|.++|++||+++|+||+|..+ . .+. .....+++.+ .+.||||++++ +.||+++++++++.
T Consensus 179 ~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~ 251 (385)
T TIGR01825 179 VAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVGTLSKAIGV--VGGYAAGHKELIEY 251 (385)
T ss_pred ccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEEeccHHhhc--CCCEEecCHHHHHH
Confidence 888 999999999999999999999643 2 222 1222233323 35799999963 44888888888887
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
+........ .+...++..++++.++++.+.+ ++..+++.++++++++.|++. ++.. ....++++++.+.
T Consensus 252 ~~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~---- 321 (385)
T TIGR01825 252 LKNRARPFL-FSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL----GYDT-GGSETPITPVVIG---- 321 (385)
T ss_pred HHHhCcccc-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCCC-CCCCCCEEEEEEC----
Confidence 763221111 1223467778888888876643 346677777777787777664 2221 1122344444431
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCC-------CCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+++||.+.+.. ...++ +++.++++++++++++|++++++
T Consensus 322 ---------~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 322 ---------DEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred ---------CHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 22345789999999999986431 12334 35678999999999999998864
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=205.52 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=190.2
Q ss_pred CcHHHHHHHHHHHHcC----CCC-CCCChhHHHHHHHHHhhC---C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKG----TSF-GAPCLLENVLAEMVISAV---P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~----~~~-~~~~~~~~~l~~~l~~~~---~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+.+++.+.+.+. ... +.+.....+|++.+++++ . +++++++|+|+++++...+.+. .+++.|++
T Consensus 47 ~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~~l~---~~gd~Vlv 123 (402)
T TIGR03542 47 LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQSLF---GSDNTVAV 123 (402)
T ss_pred CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHHHhc---CCCCEEEE
Confidence 3567888888877653 112 335667788999999864 3 5789999999999998754332 46788999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|......+...+..++.. .++. ..+++.++.++-+.+...+.+. ++++++++...+|++|.+++ .
T Consensus 124 ~~P~y~~~~~~~~~~g~~~~~~-----~~~~----~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~l~nP~NPTG~~~s-~ 192 (402)
T TIGR03542 124 QDPVYPAYVDSNVMAGRAGVLD-----DDGR----YSKITYLPCTKENNFIPDLPEE-PKIDIIYLCSPNNPTGTVLT-K 192 (402)
T ss_pred eCCCCcchHHHHHHcCCccccc-----cccc----cceEEEeecchhhCCCCCcccc-CCceEEEEeCCCCCCCccCC-H
Confidence 9999988755444333211110 0000 0012222221000000001111 24566666544555666555 4
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccc---cc-cCCCcchhhhhhhcc-CCccceeeeehHHHH-------
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQ---EY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM------- 226 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~---~~-~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~------- 226 (368)
+.+++|+++|++||+++|+||+|.+| ..+. .... +. .+....+.||||.++ +|+|+||++++++++
T Consensus 193 ~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~ 272 (402)
T TIGR03542 193 EQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSV 272 (402)
T ss_pred HHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchhhH
Confidence 45999999999999999999999988 4332 1111 11 122344679999998 899999999988776
Q ss_pred -HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC--H----HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 227 -EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG--T----YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 227 -~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~--~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
..+.. .......+.+.+++.++...++ +.. + .+.+.++++.+.+.|+ +.+.....+..+.++|
T Consensus 273 ~~~~~~---~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~~~~~~~~~~f~~ 342 (402)
T TIGR03542 273 IQDWER---RQCTKFNGASYPVQRAAEAAYA---GEGLQPILEAISYYMENARILRKALE----AAGFKVYGGEHAPYLW 342 (402)
T ss_pred HHHHHH---HhhhcccCCCHHHHHHHHHHHc---CcchhHHHHHHHHHHHHHHHHHHHHH----hcCceecCCCceeEEE
Confidence 22210 0111222467777777665554 211 1 2223344444444443 3342222222456778
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+.+. ...+..++++.|+ ++||.+.++.. .++|+++..+++++++++++|+++|
T Consensus 343 v~l~-------------~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 343 VKTP-------------EGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEAL 402 (402)
T ss_pred EECC-------------CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhhC
Confidence 8763 2223467888887 46999999742 2456676678999999999998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=201.50 Aligned_cols=304 Identities=12% Similarity=0.101 Sum_probs=185.9
Q ss_pred hHHHHHHHHHhhC----C-----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccC
Q 017633 34 LENVLAEMVISAV----P-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 104 (368)
Q Consensus 34 ~~~~l~~~l~~~~----~-----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (368)
...+|++++++++ + +++++++|+|++++++.++.+.. .++|.|++..+.|.+.........+.++...+
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~ 173 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWRTGVKIVPIH 173 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhcCCcEEEEEe
Confidence 3455555555543 2 46899999999999999886552 46789999998888764433222343332222
Q ss_pred CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 105 LPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
....+++. .|++++++++++. ..+++++++...+|++|.++ +++.+++|.++|++|++++|+||
T Consensus 174 ~~~~~~f~------------~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DE 240 (447)
T PLN02607 174 CDSSNNFQ------------VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATV-QRSVLEDILDFVVRKNIHLVSDE 240 (447)
T ss_pred CCCCCCCc------------CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCCEEEEec
Confidence 21111111 1789999988741 13566555543344455544 45559999999999999999999
Q ss_pred hhhch-hcccCc-ccc----ccC------CCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHHH
Q 017633 182 VMTGF-RLAYGG-AQE----YFG------VTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLA 247 (368)
Q Consensus 182 ~~~~~-~~g~~~-~~~----~~~------~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~ 247 (368)
+|.++ +.+..+ +.. ..+ ...-+.+|||.|+ +|+|+||+++ ++++.+.+.... .....+.++
T Consensus 241 iYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~-----~~~~~s~~~ 315 (447)
T PLN02607 241 IYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-----SFTLVSSQT 315 (447)
T ss_pred cccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh-----hcCCCCHHH
Confidence 99875 332211 111 011 1112458999999 8999999987 677766665211 111346666
Q ss_pred HHHHHHHHHHHccCCHH-HHHHHHHHHHHH---HHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 248 MTAGIHTLKRLKEPGTY-EYLNKITGELTQ---GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 248 ~~a~~~~l~~~~~~~~~-~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
+.++...++ ++++. +.+.++++++++ .+.+.+.+.+.+...+..|.++|+++..... .+......+
T Consensus 316 q~~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~-------~~~~~~e~~ 385 (447)
T PLN02607 316 QHLLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLE-------TPTREGELA 385 (447)
T ss_pred HHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhc-------CCCchhHHH
Confidence 666554443 44443 233333333333 3444444455444445567888988743110 011122356
Q ss_pred HHHHHHH-cCeeecCCCC------CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 324 FYRGMLE-EGVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 324 ~~~~l~~-~Gi~~~~~~~------~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
+.+.|++ +||.+.||.. .++|+++.. +++++++++++|.+++++
T Consensus 386 l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 386 LWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred HHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 7777775 6999999742 245677774 899999999999998853
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-25 Score=199.38 Aligned_cols=307 Identities=17% Similarity=0.152 Sum_probs=201.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.+.+..... ++.....++++.++++++ +++++++++|+++++..++... ..+++.|++..++|...
T Consensus 36 ~~~~~~~a~~~~~~~~~~--y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~--~~~gd~Vli~~p~y~~~ 111 (352)
T PRK03321 36 PLPSVRAAIARAAAGVNR--YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT--AGPGDEVIFAWRSFEAY 111 (352)
T ss_pred CCHHHHHHHHHHHHhcCc--CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh--cCCCCEEEeCCCCHHHH
Confidence 456899999887764333 355678899999999997 6789999988888888777654 35678899887776543
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
. ......|..+...+.....+. |++++++.++ +++++++++..++++|.+++ .+++.+
T Consensus 112 ~-~~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~----~~~l~~ 169 (352)
T PRK03321 112 P-ILVQVAGATPVQVPLTPDHTH--------------DLDAMAAAIT---DRTRLIFVCNPNNPTGTVVT----PAELAR 169 (352)
T ss_pred H-HHHHHcCCEEEEccCCCCCCC--------------CHHHHHHhhc---cCCCEEEEeCCCCCcCCCcC----HHHHHH
Confidence 2 222333333222111111111 7899998886 35566666555666788777 566666
Q ss_pred HHHH--hCCEEEEehhhhch-hcccC-ccccccC---CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccccc
Q 017633 169 ITKE--NGALLIFDEVMTGF-RLAYG-GAQEYFG---VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 169 l~~~--~~~~li~De~~~~~-~~g~~-~~~~~~~---~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t 240 (368)
+|++ +++++|+||+|.++ ..+.. ....... ....+.||||.++ +|+|+||+++++++++.+... ..+
T Consensus 170 l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~-----~~~ 244 (352)
T PRK03321 170 FLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKV-----AVP 244 (352)
T ss_pred HHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHh-----cCC
Confidence 6665 69999999999888 43321 1111111 1223458999999 899999999999999888742 245
Q ss_pred CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 241 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
++.+.+++.++.++++.. +.+.++.++..+ -++.+.+.+...+.. .....++++|+.+. ..
T Consensus 245 ~~~s~~~q~~a~~~l~~~--~~~~~~~~~~~~-~r~~~~~~L~~~~~~-~~~~~g~~i~i~l~---------------~~ 305 (352)
T PRK03321 245 FSVNSLAQAAAIASLAAE--DELLERVDAVVA-ERDRVRAALRAAGWT-VPPSQANFVWLPLG---------------ER 305 (352)
T ss_pred CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHH-HHHHHHHHHHHCCCc-cCCCCCCEEEEeCC---------------CC
Confidence 677889988887777522 223333322222 223344444434432 22334677777652 12
Q ss_pred HHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..++++.|.++||.+.+.+...+|+.+ .+.+++++++++|+++++.
T Consensus 306 ~~~~~~~l~~~gI~v~~~~~~~iRi~~-~~~~~~~~~~~al~~~~~~ 351 (352)
T PRK03321 306 TADFAAAAAEAGVVVRPFAGEGVRVTI-GAPEENDAFLRAARAWRAG 351 (352)
T ss_pred HHHHHHHHHHCCEEEEccCCCcEEEee-CCHHHHHHHHHHHHHHhcc
Confidence 468899999999999987655566664 5889999999999998764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=203.62 Aligned_cols=318 Identities=16% Similarity=0.154 Sum_probs=196.2
Q ss_pred CcHHHHHHHHHHHH----cC-CCCCCCChhHHHHHHHHHhhCC-------CCC-eEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 10 SYLQVLAALGETMK----KG-TSFGAPCLLENVLAEMVISAVP-------SIE-MVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 10 ~~~~v~~a~~~~~~----~~-~~~~~~~~~~~~l~~~l~~~~~-------~~~-~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
++|.+.+++.+..+ .. ...+.+.....+|++.++++++ +.+ .+++++|..+++..++.+.. ..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~-~~~~~ 94 (363)
T PF00155_consen 16 QNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK-INPGD 94 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH-SSTTS
T ss_pred cccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc-ccccc
Confidence 44555555544432 12 2334455668999999999875 356 78888644455544444442 34678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-C--CeEEEEEcccCCCC
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-G--EIAAIILEPVVGNS 153 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~--~~~~~~~~~~~~~~ 153 (368)
.|++..+.|...... +...|.++...++...... ..|+++|++.+++.+ + +++++++...++++
T Consensus 95 ~vlv~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 95 TVLVPDPCYPSYIEA-ARLLGAEVIPVPLDSENDF------------HLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp EEEEEESSSTHHHHH-HHHTTSEEEEEEEEETTTT------------EETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred cceecCCcccccccc-ccccCceeeeccccccccc------------cccccccccccccccccccccceeeeccccccc
Confidence 899988888765433 3333443322111100110 118999999999631 1 35666666666667
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-c-ccccCCC---cchhhhhhhcc-CCccceeeeehHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A-QEYFGVT---PDLTTLGKIIG-GGLPVGAYGGRRDIM 226 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~-~~~~~~~---~di~s~sK~~~-~G~~iG~v~~~~~~~ 226 (368)
|..++.++ +++|+++|++||+++|+||+|.++ .....+ . ....... .-+.|+||.++ +|+|+||++++++++
T Consensus 162 G~~~~~~~-l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~ 240 (363)
T PF00155_consen 162 GSVLSLEE-LRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELI 240 (363)
T ss_dssp TBB--HHH-HHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHH
T ss_pred cccccccc-ccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchhhhh
Confidence 76665444 999999999999999999999887 322211 1 1122222 23458999999 899999999999888
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
+.+.. ... .+..+.+.+.++.+.+..... ..+.++.++..+..++.+.+.+.+.+........+.+.|..+.
T Consensus 241 ~~l~~---~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-- 313 (363)
T PF00155_consen 241 ERLRR---FQR--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPEAGFFLWVRLD-- 313 (363)
T ss_dssp HHHHH---HHH--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSBSSEEEEEES--
T ss_pred hhhhh---ccc--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeeccCccEEEEEcc--
Confidence 88873 222 223366666666666553321 1133444444444444455555445555444445666666652
Q ss_pred CCcccchhcccccHHHHHHHHHHHHc-CeeecCCCCC----cccccc-CCCHHHHHHHHHHH
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFTSL-AHSSDDIQHTITAA 361 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~----~~~~~~-~~~~~~i~~~~~~l 361 (368)
..+..++++.|+++ ||.+.++..+ .+|+++ ..+++++++++++|
T Consensus 314 ------------~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 314 ------------PNDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp ------------HHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred ------------cchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 22568899999998 9999997433 456666 78999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=198.21 Aligned_cols=313 Identities=13% Similarity=0.030 Sum_probs=194.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
|+++ .++.+++++.+.+.....| +.....+|++.++++++ +++++++|+|+++++..+++++ .+++.|++..+
T Consensus 32 n~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l---~~g~~vlv~~P 105 (360)
T PRK07392 32 NPLG-PPESVIAAIQSALSALRHY--PDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL---AQLRAVYLITP 105 (360)
T ss_pred CCCC-CCHHHHHHHHHHHHHhhcC--CCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh---CCCCeEEEECC
Confidence 3444 6678999988877653333 33345799999999997 7889999999999999888764 24568999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|......+.. .|..+.........+.. ....+++++++.. ++++++++...+|++|.+++ .
T Consensus 106 ~y~~~~~~~~~-~g~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~l~nP~NPTG~~~~----~ 167 (360)
T PRK07392 106 AFGDYRRALRA-FGATVKELPLPLDQPSP---------GLTLRLQTLPPQL----TPNDGLLLNNPHNPTGKLWS----R 167 (360)
T ss_pred CcHHHHHHHHH-cCCeEEEEecccccCCc---------ccccCHHHHHHhc----cCCCEEEEeCCCCCCCCCcC----H
Confidence 99876544443 34433222111111110 0001455554432 24455554444566777777 6
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCcc-c---cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGA-Q---EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~---~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
++|.++++++++ +|+||+|.+| ..+.... . +.......+.||||.++ +|+|+||+++++++++.+....
T Consensus 168 ~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~---- 242 (360)
T PRK07392 168 EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWR---- 242 (360)
T ss_pred HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhC----
Confidence 778888889985 6669999988 5432111 1 11122234568999999 9999999999998888876322
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
..++.+.+++.++.++++ +..+.++.++..+..++.+.+.+...+.....++.++++|+.+. .
T Consensus 243 -~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~~~~-------------~ 305 (360)
T PRK07392 243 -DPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLVQSQ-------------G 305 (360)
T ss_pred -CCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEEEcC-------------C
Confidence 346778899888877775 33344444444444444444444444222233345667676542 1
Q ss_pred cHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 318 TTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 318 ~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+..+++..++ ++||.+.++.. .++|+++.. .++.+++.+.|++++.
T Consensus 306 --~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 306 --SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT-EAENQRLLEALAAILA 358 (360)
T ss_pred --CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhh
Confidence 2467887764 57999998742 234555444 4455677777776653
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=185.21 Aligned_cols=329 Identities=13% Similarity=0.066 Sum_probs=210.3
Q ss_pred ceeccCCCcH----------HHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHH
Q 017633 3 QLIILFPSYL----------QVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMG 64 (368)
Q Consensus 3 ~~~~~g~~~~----------~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~ 64 (368)
.+++++||+| +..+|+..++..+-.. |.|+......++++++++ + ..++|++|+|.++|++.
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~ 141 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIEL 141 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHH
Confidence 5678888777 6788888888775433 346666777777888874 2 37899999999999999
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE
Q 017633 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 65 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~ 143 (368)
++..+. .++.+|+++.++|.-+...+. -.+..+.+..+ |...+=. |++.+|.++.+ +|++
T Consensus 142 ~i~~LA--~p~aNILlPrPGfp~Y~~~a~-~~~lEVR~ydlLPe~~weI-------------DL~~veal~DE---NT~A 202 (447)
T KOG0259|consen 142 AISSLA--NPGANILLPRPGFPLYDTRAI-YSGLEVRYYDLLPEKDWEI-------------DLDGVEALADE---NTVA 202 (447)
T ss_pred HHHHhc--CCCCceecCCCCCchHHHhhh-hcCceeEeecccCccccee-------------chHHHHHhhcc---CeeE
Confidence 996552 578899999998875433222 22333322222 2222211 89999999984 4554
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccC-CCcc--hhhhhhhcc-CCccce
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG-VTPD--LTTLGKIIG-GGLPVG 217 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~-~~~d--i~s~sK~~~-~G~~iG 217 (368)
+++...+|+.|.+..... |++|+++|+++++++|.||+|.++ +.+.. ..+..+. ..|- +.++||.+- +|||+|
T Consensus 203 ivviNP~NPcGnVys~~H-L~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlG 281 (447)
T KOG0259|consen 203 IVVINPNNPCGNVYSEDH-LKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLG 281 (447)
T ss_pred EEEeCCCCCCcccccHHH-HHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceee
Confidence 444444444555555444 999999999999999999999887 55544 3333333 3443 357899998 999999
Q ss_pred eeeehHH--------HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHhc
Q 017633 218 AYGGRRD--------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT----YEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 218 ~v~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
|++..+. ..+.+. . ...-+..++++-|+|.=.-++.- .+++ ...++.+.+...++|+++ .
T Consensus 282 Wi~~hD~~gvf~~~~~~q~~~---~-~~~~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~I---P 353 (447)
T KOG0259|consen 282 WIALHDPRGVFRDTKVVQGIK---N-FLDIIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDI---P 353 (447)
T ss_pred eEEEecccccccchHHHHHHH---H-HHhccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcC---C
Confidence 9977541 112222 1 11234455666666644433311 1333 445666666666666664 1
Q ss_pred CCceEEeeccc-eEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCC----CCccccccCCCHHHHHHHHH
Q 017633 286 GHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTIT 359 (368)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~ 359 (368)
++...+.+.|. +.++.+.-+... +-.+..+|+..|. |+.+++-||. .+++|+.+.+..+.++++++
T Consensus 354 ~l~cp~kPeg~mylmv~l~~s~~~--------~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~ 425 (447)
T KOG0259|consen 354 CLTCPVKPEGCMYLMVKLNLSLFP--------DIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFS 425 (447)
T ss_pred CcccCcCCCcceEEEeccchhhhc--------cccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHH
Confidence 22213333333 344444332221 2233477887775 5689998873 34567889999999999999
Q ss_pred HHHHHHhh
Q 017633 360 AAEKVLRQ 367 (368)
Q Consensus 360 ~l~~~l~~ 367 (368)
+|++++.+
T Consensus 426 Rik~Fc~R 433 (447)
T KOG0259|consen 426 RIKEFCDR 433 (447)
T ss_pred HHHHHHHh
Confidence 99998754
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=200.69 Aligned_cols=278 Identities=15% Similarity=0.034 Sum_probs=179.6
Q ss_pred CCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 30 APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
||... .+|++.++++++ . +++|++++|+++++.....++ .++ +|++..++|..+...+.. .|..
T Consensus 51 Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~~---~~g-~v~v~~P~y~~y~~~~~~-~g~~-------- 116 (339)
T PRK06959 51 LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPALL---PRG-RVGIAPLAYSEYAPAFAR-HGHR-------- 116 (339)
T ss_pred CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHhc---CCC-eEEEcCCCcHHHHHHHHH-CCCE--------
Confidence 45444 899999999998 3 589999999999988654432 344 488888888775433332 2222
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
++.++.++ +.+++ ....+++++|+ |++|.+.+.+ .++++++.|++++.++|+||+|.+|
T Consensus 117 -----------~~~v~~~~-~~~~~------~~~~v~l~nPn-NPTG~~~s~~-~l~~l~~~~~~~~~~vI~DEay~~~~ 176 (339)
T PRK06959 117 -----------VVPLDEAA-DTLPA------ALTHLIVVNPN-NPTAERLPAA-RLLRWHAQLAARGGTLIVDEAFADTL 176 (339)
T ss_pred -----------EEeecccc-hhccc------cCCEEEEeCCC-CCCCCCCCHH-HHHHHHHHHHHcCCEEEEECCCccCC
Confidence 22222212 22111 12356777775 4556655544 4999999999999999999999887
Q ss_pred hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 187 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
................+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++.++++ +.++.+
T Consensus 177 ~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~-----~~~~vs~~~q~a~~~~L~---~~~~~~ 248 (339)
T PRK06959 177 PAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDAL-----GAWTVSGPARHAVRAAFA---DAAWQA 248 (339)
T ss_pred CcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhc-----CCCCCcHHHHHHHHHHhC---cHHHHH
Confidence 3211111111111233569999999 9999999999999998887422 345678888888877775 333444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Cccc
Q 017633 266 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGF 344 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~ 344 (368)
+.++..+..++.+.+.+.+.++.. ...+.++|+.+. +..++.+.|.++||.++..+. .++|
T Consensus 249 ~~~~~~~~~r~~l~~~L~~~g~~~--~~~~~f~~~~~~----------------~~~~l~~~l~~~GI~vr~~~~~~~lR 310 (339)
T PRK06959 249 AMRERLAADGARLAALLRAHGFAV--HATPLFSWTDDP----------------RAAALHAALARRGIWTRYFAPPPSVR 310 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCc--cCcceEEEEeCC----------------CHHHHHHHHHhCCeEEEECCCCCeEE
Confidence 444444444444444444444322 123455566531 246789999999999987643 3566
Q ss_pred cccCCCHHHHHHHHHHHHHHHhh
Q 017633 345 TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 345 ~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++..+.+++++++++|+++++.
T Consensus 311 isi~~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 311 FGLPADEAEWQRLEDALAECVPT 333 (339)
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
Confidence 77656788999999999987653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=195.97 Aligned_cols=297 Identities=14% Similarity=0.074 Sum_probs=189.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+.+++.+++.......|+.....+++++++++++ +++++++|+|+++++..++... +++.|++..++|...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~----~gd~V~v~~P~y~~~ 107 (337)
T PRK03967 32 LPEELKEEIFEELKRVPFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF----EGKHIVITPPTFGMY 107 (337)
T ss_pred CCHHHHHHHHHHhhcCccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh----CCCeEEEeCCChHHH
Confidence 55789999988875432334456678899999999997 7899999999999998776643 478899999988743
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
.. .....|..+....... .... |++++++.+. +++++++...+|++|.+++ .+++.+
T Consensus 108 ~~-~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~~~----~~~~v~~~~P~NPtG~~~~----~~~l~~ 164 (337)
T PRK03967 108 SF-YAKLNGIPVIDVPLKE-DFTI-------------DGERIAEKAK----NASAVFICSPNNPTGNLQP----EEEILK 164 (337)
T ss_pred HH-HHHHcCCeEEEeecCC-CCCc-------------CHHHHHHhcc----CCCEEEEeCCCCCCCCCCC----HHHHHH
Confidence 32 2333344332221111 1111 7888877653 3444444444555677777 567777
Q ss_pred HHHHhCCEEEEehhhhchhcccCc-cccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHH
Q 017633 169 ITKENGALLIFDEVMTGFRLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 246 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~~-~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~ 246 (368)
+++ +++++|+||+|.+|...... ..+.......+.||||.++ +|+|+||+++++++++.+.... ..++.+.+
T Consensus 165 i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~-----~~~~~~~~ 238 (337)
T PRK03967 165 VLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIK-----PPFSLNIL 238 (337)
T ss_pred HHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhc-----CCCCCCHH
Confidence 774 79999999999887211111 1111122234569999999 9999999999999988887432 23466788
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 247 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 247 ~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
++.++..+++ +.++..+..+.....++.+.+.+.+. ..+..+.++|+.+ .+.+
T Consensus 239 ~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~~~~--------------------~~~~ 291 (337)
T PRK03967 239 TMKIVRLALD---HYDLIEERIDYIIKERERVRRELGEY----AYPSDANFLLLKL--------------------DAYD 291 (337)
T ss_pred HHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHhccC----cCCCCCcEEEEhH--------------------HHHH
Confidence 8888877775 22232222222223333444333332 2234566666542 2678
Q ss_pred HHHHcCeeecCCC---CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 327 GMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 327 ~l~~~Gi~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.|+++||.++++. ..++|+++. +.++.+++++.|+++.+.
T Consensus 292 ~l~~~gi~v~~~~~~~~~~~Ri~~~-~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 292 YLLENGIVVRKLSGRLEGHIRVTVG-KREENDEFIKALKEIKEG 334 (337)
T ss_pred HHHHCCEEEEeCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 8999999997653 223455533 567888999999887654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=204.47 Aligned_cols=334 Identities=13% Similarity=0.098 Sum_probs=197.3
Q ss_pred cHHHHHHHHHHHHc--C--CCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 11 YLQVLAALGETMKK--G--TSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 11 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
+.+++++..+.+.. . ...|.++....+|++.+++++ + ++++|++|+|+++|+..++.++.. .++|.|+
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~~gd~Vl 220 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEKDGIL 220 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-CCCCEEE
Confidence 44677777676654 2 222445566777888777765 2 468999999999999999987632 3578999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CCeEEEEEcccCCCCCcc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~~~~~~~~~~~~~~g~~ 156 (368)
+..++|..+...+. ..|..+...++....++. -|+++|++.+++.. .+++++++...+|++|.+
T Consensus 221 i~~P~Y~~y~~~~~-~~g~~~v~~~l~~~~~~~------------~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v 287 (534)
T PLN02231 221 CPIPQYPLYSASIA-LHGGTLVPYYLDEATGWG------------LEISELKKQLEDARSKGITVRALVVINPGNPTGQV 287 (534)
T ss_pred EeCCCChhHHHHHH-HcCCEEEEEecCcccCCC------------CCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC
Confidence 99999987654443 333333222221111111 08999999987421 146654444334556665
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hc-ccCc-ccccc----CC------Ccchhhhhhhc-c-CCccceeeee
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-AQEYF----GV------TPDLTTLGKII-G-GGLPVGAYGG 221 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~-g~~~-~~~~~----~~------~~di~s~sK~~-~-~G~~iG~v~~ 221 (368)
++ .+.+++|+++|++||++||+||+|.++ +. +..+ .+... +. ...+.||||.+ + +|+|+||+++
T Consensus 288 ls-~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~ 366 (534)
T PLN02231 288 LA-EENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 366 (534)
T ss_pred CC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence 55 555999999999999999999999887 53 3221 22111 11 12345899987 5 7999999965
Q ss_pred ---hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHH--ccC----------CHHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 222 ---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KEP----------GTYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~--~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
++++++.+.... ..+.+.+.+++.++..+++.- .++ .+++.++++++.+.+.|++. .+
T Consensus 367 ~~~~~~l~~~l~k~~----~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~---~g 439 (534)
T PLN02231 367 TGFTSDVREQIYKVA----SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL---EG 439 (534)
T ss_pred ecCCHHHHHHHHHHH----hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 677887775321 123344666666665555310 001 12334455555554444432 13
Q ss_pred CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCC-------ccccccCCCHHHHHHHH
Q 017633 287 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFE-------AGFTSLAHSSDDIQHTI 358 (368)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~-------~~~~~~~~~~~~i~~~~ 358 (368)
.....+..+.++|..+.-+. ......+.........++..|+ +.||.+.||..+ ++|+++..+++++++++
T Consensus 440 i~~~~p~Ggfylw~~l~lp~-~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal 518 (534)
T PLN02231 440 VTCNKAEGAMYLFPRIHLPQ-KAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIV 518 (534)
T ss_pred ceecCCCeeeEEeccccCcH-HHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHH
Confidence 33233334445553332100 0000000000011234667676 569999997422 25677778999999999
Q ss_pred HHHHHHHhh
Q 017633 359 TAAEKVLRQ 367 (368)
Q Consensus 359 ~~l~~~l~~ 367 (368)
++|++++++
T Consensus 519 ~RL~~~~~~ 527 (534)
T PLN02231 519 SRLTEFHKS 527 (534)
T ss_pred HHHHHHHHH
Confidence 999988754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=199.85 Aligned_cols=296 Identities=12% Similarity=0.077 Sum_probs=185.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
.+|.+++++.+++.......|+.....+|++.++++++ ++++|++|+|+++++..++... +.|++.+++|
T Consensus 33 ~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~------d~v~v~~P~y 106 (335)
T PRK14808 33 FPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF------DRSVFFPPTY 106 (335)
T ss_pred CCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh------CcEEECCCCH
Confidence 67789999988765422222344568899999999985 4789999999999999998754 4688889888
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
......+... |.++... +..... .++.. .+. .++++++...+|++|.+++ .++
T Consensus 107 ~~~~~~~~~~-g~~~~~v--~~~~~~--------------~~~~~--~~~----~~~~i~i~nP~NPTG~~~s----~~~ 159 (335)
T PRK14808 107 SCYRIFAKAV-GAKFLEV--PLTKDL--------------RIPEV--NVG----EGDVVFIPNPNNPTGHVFE----REE 159 (335)
T ss_pred HHHHHHHHHc-CCeEEEe--cCCCcC--------------CCChh--Hcc----CCCEEEEeCCCCCCCCCcC----HHH
Confidence 8765444443 3332221 111111 11111 122 2355555444455676676 445
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
+.+++ ++++++|+||+|.+|..... ..........-+.||||.++ +|+|+||+++++++++.+.... ..++.
T Consensus 160 l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~-----~~~~~ 233 (335)
T PRK14808 160 IERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR-----LPFNV 233 (335)
T ss_pred HHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhc-----CCCCC
Confidence 55555 58999999999988721111 11122223344568999999 8999999999999988886422 23566
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
+.+++.++.++++.. ++.++..+.....++.+.+.+...+.. ...+.++++|+.+. ..+..+
T Consensus 234 ~~~~q~a~~~~l~~~---~~~~~~~~~~~~~r~~l~~~L~~~g~~-~~~~~g~f~~~~l~--------------~~~~~~ 295 (335)
T PRK14808 234 SYVSQMFAKVALDHR---EIFEERTKFIVEERERMKSALREMGYR-ITDSRGNFVFIFME--------------KEEKER 295 (335)
T ss_pred CHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHCCCE-ECCCCCeEEEEeCC--------------CccHHH
Confidence 788888877777521 222222222222234444444444432 33456778888762 112367
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHH
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
+.+.|.++||.++... ..+|++ ..+.++++++++.|++.
T Consensus 296 ~~~~l~~~Gi~V~~~~-~~~Ris-i~~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 296 LLEHLRAKNIAVRSFR-EGVRIT-IGKREENDMILKELEVF 334 (335)
T ss_pred HHHHHHHCCeEEEECC-CCeEEe-cCCHHHHHHHHHHHHhh
Confidence 8999999999999653 345555 44678899999988753
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=200.91 Aligned_cols=275 Identities=19% Similarity=0.141 Sum_probs=184.4
Q ss_pred CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 31 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++....+++++++++++ +++++++++|+++++..+..++ .++ +|++.+++|+..... +...|
T Consensus 45 ~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l---~~g-~vl~~~p~y~~~~~~-~~~~g------------ 107 (330)
T TIGR01140 45 PDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL---APG-RVLVLAPTYSEYARA-WRAAG------------ 107 (330)
T ss_pred CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh---CCC-eEEEeCCCcHHHHHH-HHHcC------------
Confidence 43335999999999998 6789999998888888865543 344 688888888765322 22222
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~ 188 (368)
.+++.++ |++++++.++ +...+++++| +|++|.++ +.+.+++|+++|++||+++|+||+|.++ ..
T Consensus 108 -------~~~~~~~--d~~~l~~~~~---~~~~v~i~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 173 (330)
T TIGR01140 108 -------HEVVELP--DLDRLPAALE---ELDVLVLCNP-NNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPD 173 (330)
T ss_pred -------CEEEEeC--CHHHHHhhcc---cCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCc
Confidence 2233344 7888988875 2334555555 45566655 4555999999999999999999999877 32
Q ss_pred ccCccc-cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 189 AYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 189 g~~~~~-~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
...... +..+...-+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++...++ +.++.++
T Consensus 174 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~ 245 (330)
T TIGR01140 174 ASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL-----GPWTVNGPARAAGRAALA---DTAWQAA 245 (330)
T ss_pred cchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcC-----CCCCchHHHHHHHHHHHh---chHHHHH
Confidence 111111 11122222458999999 8999999999999888887422 345667777777666654 4556556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-----
Q 017633 267 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE----- 341 (368)
Q Consensus 267 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~----- 341 (368)
.+++.+..++.+.+.+.+.+.....++.+.+.|+.+. ...++++.|+++||.+.++..+
T Consensus 246 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~----------------~~~~l~~~l~~~gi~v~pg~~f~~~~~ 309 (330)
T TIGR01140 246 TRARLAAERARLAALLARLGGLEVVGGTALFLLVRTP----------------DAAALHEALARRGILIRDFDNFPGLDP 309 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcC----------------CHHHHHHHHHHCCEEEEECCCCCCCCC
Confidence 6666666666666666666533233455667777642 1368999999999999997432
Q ss_pred -ccccccCCCHHHHHHHHHHH
Q 017633 342 -AGFTSLAHSSDDIQHTITAA 361 (368)
Q Consensus 342 -~~~~~~~~~~~~i~~~~~~l 361 (368)
++|+.+....++ ++++.+|
T Consensus 310 ~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 310 RYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred CEEEEEecCHHHH-HHHHHhh
Confidence 356666665555 7777765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=202.87 Aligned_cols=313 Identities=15% Similarity=0.075 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHcCCC-CCCCChhHHHHHHHHHhhCC-------CCCeE--EEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 12 LQVLAALGETMKKGTS-FGAPCLLENVLAEMVISAVP-------SIEMV--RFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-------~~~~v--~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+.+.+++.+.+..... .+.+.....+|++++++++. +++++ ++|+|+++|+..++.+.....++|.|++.
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~ 126 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVS 126 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEEC
Confidence 5677777776543222 23455667888888888752 35666 99999999999998655333578899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+++|.++...+. ..|..+...++ +...++ |++++++.+++.+++++++++.+.+|++|.++ +
T Consensus 127 ~P~y~~~~~~~~-~~g~~~v~v~~~~~~~~~~--------------d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~-s 190 (396)
T PRK09257 127 DPTWPNHRAIFE-AAGLEVKTYPYYDAATKGL--------------DFDAMLADLSQAPAGDVVLLHGCCHNPTGADL-T 190 (396)
T ss_pred CCCcccHHHHHH-HcCCcEEEEeccccccCcc--------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-C
Confidence 999988754444 34443332221 111122 89999998875433344444444444456555 5
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hc-cc-Cccc---ccc-CCCcchhhhhhhcc-CCccceeeee---hHH----
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RL-AY-GGAQ---EYF-GVTPDLTTLGKIIG-GGLPVGAYGG---RRD---- 224 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~-g~-~~~~---~~~-~~~~di~s~sK~~~-~G~~iG~v~~---~~~---- 224 (368)
.+.+++|+++|++||+++|+||+|.++ .. +. .... ... .....+.||||.++ +|+|+||+++ +++
T Consensus 191 ~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~ 270 (396)
T PRK09257 191 PEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADR 270 (396)
T ss_pred HHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHH
Confidence 555999999999999999999999887 32 11 1111 111 12344679999999 6999999863 333
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc------c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK------E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
+...+.. .......+++.+++.++...++.-. + +.+++.++++++.+.+.|++...........+..|.
T Consensus 271 ~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~ 347 (396)
T PRK09257 271 VLSQLKA---TIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGM 347 (396)
T ss_pred HHHHHHH---HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceE
Confidence 3333321 1122333456777776665553110 0 112333444444444444443110012222344556
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHH-HHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHH
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVL 365 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l 365 (368)
++|+.+. .+++..+ .++||.+.+.+ ++.+. .+++++++++++|++++
T Consensus 348 ~~w~~l~------------------~~~~~~l~~~~~V~~~p~~----ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 348 FSYSGLT------------------PEQVDRLREEFGVYAVGSG----RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred EEecCCC------------------HHHHHHHHHcCCEEEcCCC----eEEEeeCCHHHHHHHHHHHHhhC
Confidence 6666541 2344445 56799998863 66664 79999999999998763
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=200.76 Aligned_cols=289 Identities=15% Similarity=0.113 Sum_probs=183.6
Q ss_pred CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 29 GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
.||.....+|++++++.++ ++++|++++|+++++..+++.+.. ++++.|++..++|..+.. .....|.++...+...
T Consensus 53 ~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~-~g~~~vli~~P~y~~y~~-~~~~~G~~~~~v~~~~ 130 (351)
T PRK01688 53 RYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSV-SAETIGVEIRTVPTLD 130 (351)
T ss_pred cCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC-CCCCEEEEcCCCHHHHHH-HHHHcCCEEEEeecCC
Confidence 3566667899999999998 889999999999999999976622 234789998888876432 2333344332222211
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
.... |++++++++. +++++++...+|++|.+.+.++ ++++++.|++ +.++|+||+|.+|
T Consensus 131 ~~~~--------------d~~~l~~~~~----~~~lv~l~nPnNPTG~~~~~~~-l~~l~~~~~~-~~~vivDEay~~f~ 190 (351)
T PRK01688 131 NWQL--------------DLPAIADNLD----GVKVVYVCSPNNPTGNLINPQD-LRTLLELTRG-KAIVVADEAYIEFC 190 (351)
T ss_pred CCCC--------------CHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHH-HHHHHHhCCC-CcEEEEECchhhcC
Confidence 1111 7888888763 4555555444555666665444 8888888876 6889999999887
Q ss_pred hcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 187 RLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 187 ~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
..... ..........-+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++.++++.. ..++.
T Consensus 191 ~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~-----~~~~v~~~~~~~a~~~L~~~-~~~~~ 264 (351)
T PRK01688 191 PQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVI-----APYPLSTPVADIAAQALSPQ-GIAAM 264 (351)
T ss_pred CCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHhcc-hHHHH
Confidence 22111 01112222233569999999 8999999999999988887432 34566777777776666411 01222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC----
Q 017633 265 EYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---- 339 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---- 339 (368)
++..+.....++.+.+.+...+ .....+..++++++.+. +..++++.|+++||.++.++
T Consensus 265 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~----------------~~~~l~~~L~~~gi~vr~~~~~~~ 328 (351)
T PRK01688 265 RERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT----------------ASSAVFKSLWDQGIILRDQNKQPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC----------------CHHHHHHHHHHCCeEEEECCCcCC
Confidence 2222222223344444444443 22234555677776542 14789999999999998653
Q ss_pred -CCccccccCCCHHHHHHHHHHHH
Q 017633 340 -FEAGFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 340 -~~~~~~~~~~~~~~i~~~~~~l~ 362 (368)
..++|+++. +++++++++++|+
T Consensus 329 ~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 329 LSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred CCCeEEEeCC-CHHHHHHHHHhhC
Confidence 234556544 6799999998873
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=197.37 Aligned_cols=322 Identities=13% Similarity=0.060 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhCC------C---CCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 13 QVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP------S---IEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 13 ~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~------~---~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
-+++++.+.+.+. ...+.+.....+|++.+++++. . .+++++|+|+++++..++.++. .++|.|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--~~gd~Vl 97 (388)
T PRK08637 20 MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV--DQGDTVL 97 (388)
T ss_pred chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc--CCCCEEE
Confidence 4555555544431 1223344556778888776541 1 2578999999999999887663 4678999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHc-CCCCeEEEEEcccCCCCCccc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~-~~~~~~~~~~~~~~~~~g~~~ 157 (368)
+.+++|..+...+....|.++...++. ...++ |++++++.++. .++.++++++...+|++|.++
T Consensus 98 v~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~--------------d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~ 163 (388)
T PRK08637 98 LPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGF--------------DTDALKEALQAAYNKGKVIVILNFPNNPTGYTP 163 (388)
T ss_pred EcCCCCccHHHHHHHhcCCEEEEecccCCCCcC--------------CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC
Confidence 999988876543333445444332221 12222 79999988872 112334444433344456555
Q ss_pred CCHHHHHHHHHHHHH-----hCCEEEEehhhhch-hcccCc-c-ccc-cCCCcc---h--hhhhhhcc-CCccceeeeeh
Q 017633 158 PKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYGG-A-QEY-FGVTPD---L--TTLGKIIG-GGLPVGAYGGR 222 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~-----~~~~li~De~~~~~-~~g~~~-~-~~~-~~~~~d---i--~s~sK~~~-~G~~iG~v~~~ 222 (368)
+ .+.+++|+++|++ |++++|+||+|.++ +.+... . ... .+.... + .++||.++ +|+|+||+++.
T Consensus 164 s-~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 164 T-EKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred C-HHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 4 4559999999886 99999999999888 544321 1 111 121112 2 38999987 89999999753
Q ss_pred ------HHHHHHhcCCC-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH---HHHHHHhcC----Cc
Q 017633 223 ------RDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG---IIDAGKKAG----HA 288 (368)
Q Consensus 223 ------~~~~~~~~~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~~----~~ 288 (368)
+++++.+.... .......++.|.+++.++.+.++ ++.+.+++++..+.++++ +.+.+...+ ..
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~ 319 (388)
T PRK08637 243 TKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQ 319 (388)
T ss_pred cccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 56666654210 01111234668888888777764 344544554444444433 233333331 22
Q ss_pred eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHh
Q 017633 289 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~ 366 (368)
...+..|.++|+.+. ..+..++++.|+ ++||.+.+.+...+|+++. .+++++++++++|.+++.
T Consensus 320 ~~~~~~g~~~~~~l~--------------~~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 320 AYPFNSGYFMCLKLK--------------GVDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIK 385 (388)
T ss_pred cccccceEEEEecCC--------------hHHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence 223344567776651 224578999986 5699887665556777664 589999999999999987
Q ss_pred hC
Q 017633 367 QI 368 (368)
Q Consensus 367 ~~ 368 (368)
++
T Consensus 386 ~~ 387 (388)
T PRK08637 386 DL 387 (388)
T ss_pred hc
Confidence 53
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=196.55 Aligned_cols=292 Identities=12% Similarity=0.086 Sum_probs=184.9
Q ss_pred CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCC-ceEEEEcCCCCCCchhhhhhcCCCccccCC-CC
Q 017633 31 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGL-PD 107 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 107 (368)
++....+|++.++++++ +.++|++++|+++++..++.++. .++ +.|++.+++|.. ........|..+...+. ..
T Consensus 57 ~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~--~~g~~~vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 57 PDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC--VPGRDAVLVTPPVFGM-YAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred CCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc--CCCCCeEEEcCCChHH-HHHHHHHcCCEEEEEecCCC
Confidence 33346899999999997 78899999999999999987662 234 678877776543 23333334443332221 11
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
..++. .|++++++.+.. ++++++++...+|++|.+.+.++ +++++++|+ +++++|+||+|.+|
T Consensus 134 ~~~~~------------~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~-~~~l~~~~~-~~~~iI~Deay~~f~ 197 (364)
T PRK04781 134 ADGFH------------ADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQ-IERALQALQ-GKALVVVDEAYGEFS 197 (364)
T ss_pred ccCCC------------cCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHH-HHHHHHhCC-CCcEEEEeCcchhhc
Confidence 11211 167777655532 35666666555566777776333 777777765 47899999999988
Q ss_pred hcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC--
Q 017633 187 RLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-- 262 (368)
Q Consensus 187 ~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~-- 262 (368)
..... ...+..+....+.||||.++ +|+|+||+++++++++.+.... ..++.+.+++.++.++++ +..
T Consensus 198 ~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~-----~~~~~~~~~~~~a~~~l~---~~~~~ 269 (364)
T PRK04781 198 DVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQ-----APYPVPTPCAALAEQALS---APALA 269 (364)
T ss_pred CCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHh---cccHH
Confidence 32211 11122223344679999999 9999999999999999887432 345677888877776664 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-
Q 017633 263 TYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF- 340 (368)
Q Consensus 263 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~- 340 (368)
+..+..+..+..++.+.+.+.+. +.....+..+.++|+.+. +..++.+.|.++||.++++..
T Consensus 270 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~----------------~~~~~~~~l~~~gI~v~~~~~~ 333 (364)
T PRK04781 270 VTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD----------------DAEAAFQALLAAGVVVRDQRAA 333 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC----------------CHHHHHHHHHHCCeEEeeCCCC
Confidence 22222222233334444444444 222244566788887652 136788999999999998742
Q ss_pred ----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 341 ----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 341 ----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.++|+++. +.+++++++++|+++..
T Consensus 334 ~~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 334 PRLSDALRITLG-TPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCCCCeEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 23455543 67889999999988654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=201.41 Aligned_cols=334 Identities=14% Similarity=0.070 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC------C---C--CCeEEEeCChHHHHHHHHHHHH---HhcCCc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV------P---S--IEMVRFVNSGTEACMGVLRLAR---AFTGRE 76 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~---~--~~~v~~~~~gt~a~~~al~~~~---~~~~~~ 76 (368)
+|+.+.++.+.+.. .. |.++....++++++++.+ . . .++|++|+|+++|+..++.++. ...++|
T Consensus 114 ~~~~v~e~~~~~~~-~~-Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD 191 (527)
T PRK09275 114 ADEFVYELVDGIIG-DN-YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGD 191 (527)
T ss_pred CCHHHHHHHHHHhc-CC-CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCC
Confidence 34433335565543 33 344555667777766622 1 1 2489999999999999886421 235789
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCC--CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
.|++..+.|..+... ..+.+.+.....++ ...++. .|.++++++++ +++++++++..+|++|
T Consensus 192 ~Vlv~~P~y~~Y~~~-~~l~g~~~~~v~v~~~~~~~f~------------~d~~~l~~~~~---~~tkai~l~nP~NPTG 255 (527)
T PRK09275 192 KIALMTPIFTPYLEI-PELPRYDLEVVHINADEENEWQ------------YPDSELEKLRD---PSIKALFLVNPSNPPS 255 (527)
T ss_pred EEEEeCCChHHHHHH-HHHcCCCeEEEEeecCcccCCC------------CCHHHHHhhcC---CCCCEEEEeCCcCCcC
Confidence 999999999876433 23333222211121 111111 17889988776 4666666554455566
Q ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEehhhhchhcccCcccccc-CCCcchhhhhhhcc-CCccceeeeehHH-----H
Q 017633 155 FIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD-----I 225 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~~~g~~~~~~~~-~~~~di~s~sK~~~-~G~~iG~v~~~~~-----~ 225 (368)
.+.+ ++.+++|+++|++ +|+++|+||+|..|..........+ .....+.||||.++ +|||+||++++++ +
T Consensus 256 ~v~s-~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~ 334 (527)
T PRK09275 256 VAMS-DESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKL 334 (527)
T ss_pred CCCC-HHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHH
Confidence 6555 5559999999965 4999999999987721111111111 22334569999998 8999999998765 3
Q ss_pred HHHhc-----------------------------CCCCccccccCCCCHHHHHH-HHH-HHHHHcc-CCHHHHHHHHHHH
Q 017633 226 MEMVA-----------------------------PAGPMYQAGTLSGNPLAMTA-GIH-TLKRLKE-PGTYEYLNKITGE 273 (368)
Q Consensus 226 ~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~a-~~~-~l~~~~~-~~~~~~~~~~~~~ 273 (368)
++.+. ..+......+.+.+.+.|.+ ++. ....+.. +.+.+..++..+.
T Consensus 335 i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~ 414 (527)
T PRK09275 335 IAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRR 414 (527)
T ss_pred HHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 33220 00122234556677666665 221 1122222 2233333322222
Q ss_pred HHHHHHHHHHhcCCce--EEeeccceEEEEeecCCC----cccchhcccccHHHHHHHHHHHHc-CeeecCCCC-----C
Q 017633 274 LTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPV----YNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF-----E 341 (368)
Q Consensus 274 l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~-----~ 341 (368)
.++.+.+ .++... ..+..+.++++++..... ..+..- .....+..+++.+|+++ ||.+.||.. .
T Consensus 415 Rr~~l~~---~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~-l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~ 490 (527)
T PRK09275 415 RYKALYE---GLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADY-LKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEW 490 (527)
T ss_pred HHHHHHH---HcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhh-hhccCCHHHHHHHHHhcCCEEEeCchhhCCCCC
Confidence 2222322 223222 224455666776643110 000000 00112357788888755 999999742 3
Q ss_pred ccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 342 AGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 342 ~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
++|++++ .+++++.++.++|++++++
T Consensus 491 ~vRis~a~~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 491 SVRVSLANLNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4678877 5889999999999999865
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=200.04 Aligned_cols=300 Identities=16% Similarity=0.092 Sum_probs=175.1
Q ss_pred CCCChhHHHHHHHHHhhCC--C-----CCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCC
Q 017633 29 GAPCLLENVLAEMVISAVP--S-----IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 99 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~--~-----~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 99 (368)
|.+.....+|++++++++. + .+.+.. +.+|+.+..+.+.+.....++|.|++.+++|..+...+.. .|..
T Consensus 87 Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~-~g~~ 165 (423)
T PLN02397 87 YLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRD-AGVP 165 (423)
T ss_pred CCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHH-cCCe
Confidence 4566778889999988763 1 123311 3344444333332222234778999999999877544443 3333
Q ss_pred ccccCC-CCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 017633 100 VATLGL-PDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 177 (368)
Q Consensus 100 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~l 177 (368)
....++ +.. .+. |++.+++.+....++++++++...+|++|.+++ .+++++|+++|++||+++
T Consensus 166 ~~~v~l~~~~~~~~--------------d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s-~e~l~~i~~~a~~~~~~v 230 (423)
T PLN02397 166 VRTYRYYDPKTRGL--------------DFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPT-PEQWEQISDLIKSKNHLP 230 (423)
T ss_pred EEEeecccCcCCcc--------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEE
Confidence 322211 111 111 788888888654345556655555555666555 555999999999999999
Q ss_pred EEehhhhch-hccc---Ccccccc---C-CCcchhhhhhhcc-CCccceeee--e-hHHHHHHhcC-CCCccccccCCCC
Q 017633 178 IFDEVMTGF-RLAY---GGAQEYF---G-VTPDLTTLGKIIG-GGLPVGAYG--G-RRDIMEMVAP-AGPMYQAGTLSGN 244 (368)
Q Consensus 178 i~De~~~~~-~~g~---~~~~~~~---~-~~~di~s~sK~~~-~G~~iG~v~--~-~~~~~~~~~~-~~~~~~~~t~~~~ 244 (368)
|+||+|.+| ..+. ......+ + ....+.||||.++ +|||+||++ + ++++++.+.. ..........+.+
T Consensus 231 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (423)
T PLN02397 231 FFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPP 310 (423)
T ss_pred EEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCc
Confidence 999999988 4321 1111111 1 1233568999999 899999984 3 4554432221 0011112233456
Q ss_pred HHHHHHHHHHHHHHc-c-------CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 245 PLAMTAGIHTLKRLK-E-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~-~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.+++.++..+++.-. . +++.+.++++++.+.+.|++.....++....+..+.++|+.+.
T Consensus 311 ~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~------------- 377 (423)
T PLN02397 311 IHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN------------- 377 (423)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC-------------
Confidence 677777665554210 0 1233455555555555555531111122223445556666541
Q ss_pred ccHHHHHHHHHHHH-cCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHh
Q 017633 317 ETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 317 ~~~~~~~~~~~l~~-~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~ 366 (368)
.++++.|++ +||.+.+++ |++++ .+++.+++++++|+++++
T Consensus 378 -----~~~~~~Ll~~~~V~v~~~~----Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 378 -----KEQVDRMTKEYHIYMTRDG----RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred -----HHHHHHHHHhCCEEECCCC----eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 458888865 599998654 66665 899999999999999874
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=189.21 Aligned_cols=295 Identities=18% Similarity=0.223 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhhCC-CC--CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCch-hhhhhcCCCccccCCCCC
Q 017633 33 LLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 108 (368)
+...++++.+++.++ +. ..+++++||+++++.++.... .+++++++..+++++... ......|.++.....+..
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~ 108 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--PRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEY 108 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--CCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCCC
Confidence 678899999999987 33 368889999999999997663 356677777777666532 222333443332222111
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
..+ |++++++.++++ ++++.++...+++.+|...+ +++|.++|++||+++|+|++|+ + .
T Consensus 109 ~~~--------------d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~-g 167 (355)
T TIGR03301 109 EPP--------------DLNRIEEALAAD-PDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-F-G 167 (355)
T ss_pred CCC--------------CHHHHHHHHHhC-CCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-c-C
Confidence 111 799999999864 24445554445555787777 9999999999999999998875 2 1
Q ss_pred ccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC-cc-------------ccccCCCCHHHHHHHHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY-------------QAGTLSGNPLAMTAGIHT 254 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~-~~-------------~~~t~~~~~~~~~a~~~~ 254 (368)
+..+.+..++.+..+.+++|+++|+.++|++++++++++.+..... .. ....++.+...+.++.++
T Consensus 168 ~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 247 (355)
T TIGR03301 168 AIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQA 247 (355)
T ss_pred CcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHH
Confidence 1223344445544457899999766678999999988877652111 00 012345677788888888
Q ss_pred HHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 255 LKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 255 l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
++.+.+++ ..++++++++++++.|++ .+...... ..+.++++.+... ...+..++.+.
T Consensus 248 l~~~~~~g~~~~~~~~~~~~~~~~~~~L~~----~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 312 (355)
T TIGR03301 248 LEELEAEGGVPARIARYRRNRELLVDGLRA----LGFQPLLPERWQSPIIVSFLYPDD-----------PDFDFDDFYQE 312 (355)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHH----cCCeeecCCCCCCCcEEEEECCCC-----------CcchHHHHHHH
Confidence 88775443 234455555555555544 33321111 1223445544210 01234689999
Q ss_pred HHHcCeeecCCCC---Cccccc--cCCCHHHHHHHHHHHHHHH
Q 017633 328 MLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 328 l~~~Gi~~~~~~~---~~~~~~--~~~~~~~i~~~~~~l~~~l 365 (368)
|.++||.+.+++. ..+|++ ..++++|++++++.|++++
T Consensus 313 l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 313 LKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 9999999998753 345553 4569999999999998764
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=196.14 Aligned_cols=343 Identities=13% Similarity=0.053 Sum_probs=185.8
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHH-----hhCC----CCC--eEEEeCChHHHHHHHHHHHH---Hhc
Q 017633 8 FPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVI-----SAVP----SIE--MVRFVNSGTEACMGVLRLAR---AFT 73 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~----~~~--~v~~~~~gt~a~~~al~~~~---~~~ 73 (368)
+..+++++.++.+.+.. .+|..+ .....++++++ +.+. ..+ +|++|+|+++|+..++..+. ...
T Consensus 105 ~~~~~~~~~~~~~~~~~-~~Y~~p-~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~ 182 (521)
T TIGR03801 105 GFDPDAFLYEMCDGIIG-DNYPVP-DRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLK 182 (521)
T ss_pred CCCCCHHHHHHHHHhhc-CCCCCC-CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCC
Confidence 33456777777776533 234323 22233333333 2221 223 89999999999999886421 135
Q ss_pred CCceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
++|.|++..++|..+........ +..++......... .+ ...+. .|.++++++++ +++++++++..+|+
T Consensus 183 pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~----~g--~~~~~-~d~~~l~~~~~---~~~kai~l~nP~NP 252 (521)
T TIGR03801 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTE----DG--THTWQ-YPDKELEKLRD---PSIKALFVVNPSNP 252 (521)
T ss_pred CCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccc----cc--cccCC-CCHHHHHHhcC---CCCcEEEEeCCCCC
Confidence 78999999999987543322221 22222111111000 00 00000 17888888765 35666665444455
Q ss_pred CCcccCCHHHHHHHHHHHHHh--CCEEEEehhhhchhcccCcccccc-CCCcchhhhhhhcc-CCccceeeeehHH----
Q 017633 153 SGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD---- 224 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~--~~~li~De~~~~~~~g~~~~~~~~-~~~~di~s~sK~~~-~G~~iG~v~~~~~---- 224 (368)
+|.+.+.++ +++|+++|++| ++++|+||+|..|........... ....-+.||||.++ +|||+||++++++
T Consensus 253 TG~vls~e~-l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d 331 (521)
T TIGR03801 253 PSVAMSDES-IEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFD 331 (521)
T ss_pred CCCCCCHHH-HHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCchHHHH
Confidence 666555444 99999999987 999999999987721111111111 12233569999998 8999999988754
Q ss_pred -HHH--------HhcCC---------------------CCccccccCCCCHHHHH--HHHHHHHHHcc-CCHHHHHHHHH
Q 017633 225 -IME--------MVAPA---------------------GPMYQAGTLSGNPLAMT--AGIHTLKRLKE-PGTYEYLNKIT 271 (368)
Q Consensus 225 -~~~--------~~~~~---------------------~~~~~~~t~~~~~~~~~--a~~~~l~~~~~-~~~~~~~~~~~ 271 (368)
+++ .+..+ +......+.+.+.+.|. ++.++...+.. +.+.+..+++.
T Consensus 332 ~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~ 411 (521)
T TIGR03801 332 KLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAETKDIC 411 (521)
T ss_pred HHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 221 11100 01122344455555554 32223333322 23333333333
Q ss_pred HHHHHHHHHHHHhcCCce--EEeeccceEEEEeecCCC----cccchhcccccHHHHHHHHHHHH-cCeeecCCCC----
Q 017633 272 GELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPV----YNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF---- 340 (368)
Q Consensus 272 ~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~---- 340 (368)
+..++.+.+. ++... ..+..+.++++++..... ..|..- .....+..+++.+|++ .||.+.||..
T Consensus 412 ~~R~~~l~~~---Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~-l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~ 487 (521)
T TIGR03801 412 RRREKLLFRG---LGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSY-LKKNYSPVDVLFRLAEETGIVLLPGGGFGGP 487 (521)
T ss_pred HHHHHHHHHh---cCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHH-HhccCCHHHHHHHHHHhCCEEEeCchhcCCC
Confidence 3333333332 23321 223445677777642110 000000 0001124678877875 4999999842
Q ss_pred -CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 341 -EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 341 -~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
..+|++++ .+++++.++.++|++++++
T Consensus 488 ~~~vRisla~l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 488 EWSVRVSLANLNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 24677777 5899999999999998865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=187.31 Aligned_cols=315 Identities=23% Similarity=0.218 Sum_probs=203.6
Q ss_pred ceeccCCC-cHHHHHHHHHHHHcCCC-------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFPS-YLQVLAALGETMKKGTS-------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~~-~~~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.-+||+. ||+|++++.+++++... .....+...++++.++++++.. ..+++++|++++..++..+. .+
T Consensus 8 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~iv~~sg~~a~~~~~~~~~--~~ 84 (349)
T cd06454 8 SNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKE-AALVFSSGYAANDGVLSTLA--GK 84 (349)
T ss_pred cCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCC-CEEEeccHHHHHHHHHHHhc--CC
Confidence 45678995 99999999999986321 1134677899999999999743 45666789999998876553 45
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC--CCCeEEEEEcccCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGN 152 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~--~~~~~~~~~~~~~~~ 152 (368)
++.|++..+.| ..........|..+ ..++..|.+++++.+++. +++++++++++.+++
T Consensus 85 gd~Vl~~~~~~-~~~~~~~~~~g~~~-------------------~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~ 144 (349)
T cd06454 85 GDLIISDSLNH-ASIIDGIRLSGAKK-------------------RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSM 144 (349)
T ss_pred CCEEEEehhhh-HHHHHHHHHcCCce-------------------EEecCCCHHHHHHHHHHhhccCCCeEEEEeccccC
Confidence 67787766544 33333333222221 222223788899998853 246788888888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-chh--cccCc---cccccCCCcchhhhhhhccCCccceeeeehHHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR--LAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~--~g~~~---~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
+|...+ +++|+++|++||+++|+||+|. +.. .+... .....+.+..+.|+||.+++ +.|+++.+++++
T Consensus 145 tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~gG~i~~~~~~~ 218 (349)
T cd06454 145 DGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA--VGGYIAGSKELI 218 (349)
T ss_pred CCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc--cCCEEECCHHHH
Confidence 888777 9999999999999999999995 321 11110 11112222224589999984 458888888887
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
+.+....... ..+.+.++..++++.++++.+.+ +...+++.++.+.+++.|.+. +........+.+.++..
T Consensus 219 ~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~~~~~~--- 290 (349)
T cd06454 219 DYLRSYARGF-IFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL----GFPVGGSPSHIIPPLIG--- 290 (349)
T ss_pred HHHHHhchhh-hccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcccCCCCCcEEEEeC---
Confidence 7765322111 12235677888888888887654 334556666666666666553 33222121222223221
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Ccccc--ccCCCHHHHHHHHHHHHHH
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~~--~~~~~~~~i~~~~~~l~~~ 364 (368)
++..+..++++.|.++||.+.+++. ..+|+ +...+++++++++++|+++
T Consensus 291 ----------~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 291 ----------DDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred ----------CChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1223457899999999999986421 23454 4557999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=185.96 Aligned_cols=283 Identities=17% Similarity=0.066 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
++|.+.+++.+++..... +|. ...++++++++++ +++++|+|+++++..++.++ .+++.|++..++|....
T Consensus 21 ~p~~~~~a~~~~~~~~~~--yp~--~~~l~~~ia~~~~--~~I~vt~G~~~al~~~~~~~---~~gd~vlv~~P~y~~~~ 91 (311)
T PRK08354 21 PPEWLDEMFERAKEISGR--YTY--YEWLEEEFSKLFG--EPIVITAGITEALYLIGILA---LRDRKVIIPRHTYGEYE 91 (311)
T ss_pred CCHHHHHHHHHHHHHhhc--CCC--hHHHHHHHHHHHC--CCEEECCCHHHHHHHHHHhh---CCCCeEEEeCCCcHHHH
Confidence 468899999887655332 332 4678999999886 47999999999998877543 35789999999988765
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
..+.. .|..+ ..++. |++.+++.++ +...+++++|+ |++|.+.+ .+.+++|+++
T Consensus 92 ~~~~~-~g~~~-------------------~~~~~-d~~~l~~~~~---~~~~vi~~~P~-NPTG~~~~-~~~l~~l~~~ 145 (311)
T PRK08354 92 RVARF-FAARI-------------------IKGPN-DPEKLEELVE---RNSVVFFCNPN-NPDGKFYN-FKELKPLLDA 145 (311)
T ss_pred HHHHH-cCCEE-------------------eecCC-CHHHHHHhhc---CCCEEEEecCC-CCCCCccC-HHHHHHHHHH
Confidence 44333 23222 11111 7888888876 23456666774 45565555 4559999999
Q ss_pred HHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHH
Q 017633 170 TKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247 (368)
Q Consensus 170 ~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 247 (368)
|++||+++|+||+|.+| ..+.. .. ......+.||||.++ +|+|+||+++ +.+.+.... ..+..+..+
T Consensus 146 a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~-----~~~~~~~~~ 214 (311)
T PRK08354 146 VEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVR-----MPWSIGSTG 214 (311)
T ss_pred hhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcC-----CCccCCHHH
Confidence 99999999999999988 43321 11 222334569999999 9999999988 334443211 233445555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 248 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
++++.+.++ +. .+++.++.+.+++..+.+..... ..+.++++++.+. +..++++.
T Consensus 215 ~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~----------------~~~~~~~~ 269 (311)
T PRK08354 215 YAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKALY----VKSDANFFIKDVG----------------DAEKFVEF 269 (311)
T ss_pred HHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhcC----CCCCCcEEEEECC----------------CHHHHHHH
Confidence 555444433 22 23444555555554444322221 2344555555431 13678899
Q ss_pred HHHcCeeecCCCCC----ccccccCCCHHHHHHHHHHHHHH
Q 017633 328 MLEEGVYFAPSQFE----AGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 328 l~~~Gi~~~~~~~~----~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
|.++||.+.++..+ ++|+++. +.++.+++++.|+++
T Consensus 270 l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 309 (311)
T PRK08354 270 LKRNGILVRDCTSFGLPGYIRFSVR-DREENEKLIRALREW 309 (311)
T ss_pred HHHCCeEEEecccCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 99999999998543 2344433 456778888888765
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=173.50 Aligned_cols=319 Identities=17% Similarity=0.157 Sum_probs=226.4
Q ss_pred eeccCC-CcHHHHHHHHHHHHcC-C------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILFP-SYLQVLAALGETMKKG-T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g~-~~~~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
+-++|- .+|+|++|+.+.+++. . +-...+....+|.+.|+++++.....+|+ |..-|++..+.++.+.-++
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFs-SCfVANDstLftLak~lpg 257 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFS-SCFVANDSTLFTLAKKLPG 257 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeee-eeeeccchHHHHHHHHCCC
Confidence 345565 8999999999999882 1 12335678899999999999865566665 5777777777444333344
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~g 154 (368)
-+|..+...|++....+..++. +-..+.+||++.|++++.+. ++.++.+-+|++++|.|
T Consensus 258 -cei~SD~gNHASMI~GIrns~v-------------------~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~G 317 (570)
T KOG1360|consen 258 -CEIFSDEGNHASMIQGIRNSRV-------------------PKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDG 317 (570)
T ss_pred -cEEeccccchHHHHHHhhhcCC-------------------cceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCC
Confidence 3455566777765544444333 23445677999999999974 45688999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCC--cchh--hhhhhccCCccceeeeehHHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVT--PDLT--TLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~--~di~--s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
.+.| ++||++++++||.+.++||+| .|+ .....+.-+.-|+. .||+ |++|+||. -.||+..+.++++.
T Consensus 318 avcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc--VGGYIAat~~LvDm 391 (570)
T KOG1360|consen 318 AVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC--VGGYIAATRKLVDM 391 (570)
T ss_pred CcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc--ccceehhhhhHHHH
Confidence 9999 999999999999999999999 555 22222344555653 4664 79999983 23578889999999
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccC-C--HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-G--TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~-~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
++.....+. .|.+.+|..++.++++.+.+..+ + +++..+++.+++++.|.+ .|.| .++....++.+.+.
T Consensus 392 iRSyAaGFI-FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~----~GiP-Vi~~pSHIiPv~vg-- 463 (570)
T KOG1360|consen 392 IRSYAAGFI-FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME----LGIP-VIPNPSHIIPVRVG-- 463 (570)
T ss_pred HHHhcCceE-EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----cCCc-ccCCCcceeeeecc--
Confidence 887665555 44478889999999999988643 2 444455555555555555 4554 34445666666663
Q ss_pred CCcccchhcccccHHHHHHHHHHHH-cCeeecCCCCCcc-------c--cccCCCHHHHHHHHHHHHHHHhhC
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAG-------F--TSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~~~~-------~--~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.....+.++.|+. +||++..-.+|.+ + +...+|.+.++.+++.+..++.++
T Consensus 464 -----------da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 464 -----------DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred -----------CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 44556788888875 5999977654432 3 456679999999999999988764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-23 Score=185.22 Aligned_cols=308 Identities=17% Similarity=0.139 Sum_probs=199.1
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC--------CCC-C-----CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHH
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG--------TSF-G-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 66 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~--------~~~-~-----~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al 66 (368)
.++++||+ .+|++.+++.+++.+. .+. + ...+...++++.++++++.. ..++.++|+.++...+
T Consensus 10 ~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~~l~~~sG~~a~~~~~ 88 (370)
T PRK05937 10 VTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-EAFIVPSGYMANLGLC 88 (370)
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-eEEEECChHHHHHHHH
Confidence 46789998 8889999998887663 111 1 13568999999999999753 4466667888886544
Q ss_pred HHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEE
Q 017633 67 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAA 143 (368)
Q Consensus 67 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~ 143 (368)
... .+++.+|+.+..+|++....+..... . .+.++++|+++++++++.. ++++.+
T Consensus 89 ~~~---~~~~d~ii~d~~~H~sv~~~~~~~~~-~------------------~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 146 (370)
T PRK05937 89 AHL---SSVTDYVLWDEQVHISVVYSLSVISG-W------------------HQSFRHNDLDHLESLLESCRQRSFGRIF 146 (370)
T ss_pred HHh---CCCCCEEEEEhhhhHHHHHHHHHcCC-c------------------eEEecCCCHHHHHHHHHhhhccCCCcEE
Confidence 332 34557888889999887665554211 0 1223455899999999742 134667
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccC---CCcchhhhhhhccC-Cccc
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG---VTPDLTTLGKIIGG-GLPV 216 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~---~~~di~s~sK~~~~-G~~i 216 (368)
++++++++++|.+.| +++|.++|+++|+++++||+|+ |. ..+.. ....++ ..+++.||||++++ |
T Consensus 147 v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~~~~~tlsK~~g~~G--- 218 (370)
T PRK05937 147 IFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG-FCHSLGYENFYAVLVTYSKALGSMG--- 218 (370)
T ss_pred EEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCcEEEEechhhhhcCc---
Confidence 788999999999999 9999999999999999999995 42 23322 112233 23567899999984 3
Q ss_pred eeeeehHHHHHHhcC-CCCccccccCCCCHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 017633 217 GAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG--TYEYLNKITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 217 G~v~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
+.++..++..+.+.. ..+.. .+.+.++.+++++.++++.+.+.. ..+++.++.+++++.+.. ..
T Consensus 219 ~~vl~~~~~~~~~~~~~~~~~--~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~----~~------- 285 (370)
T PRK05937 219 AALLSSSEVKQDLMLNSPPLR--YSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS----AA------- 285 (370)
T ss_pred eEEEcCHHHHHHHHHhCCCCe--ecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----CC-------
Confidence 234444554444331 11222 233567788888888888886533 233344444444333321 11
Q ss_pred ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---CCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+....+.+ ......++.+.|.++||.++... .+.+| ++..++++|++++++.|++++++
T Consensus 286 ~~~~~~i~~--------------~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~ 350 (370)
T PRK05937 286 PGCVQPIFL--------------PGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 (370)
T ss_pred CCCEEEEEe--------------CChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 111112222 11234678889999999887432 22344 45678999999999999998865
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=188.83 Aligned_cols=314 Identities=18% Similarity=0.150 Sum_probs=192.2
Q ss_pred CcHHHHHHHHHHHHc-CCCCCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|.+++++.+.-.. ....+.+.....++++.++++++ +.+++++++|+++++..++..+. ..+++|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--~~g~~vl~~ 89 (350)
T cd00609 12 PPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL--NPGDEVLVP 89 (350)
T ss_pred CCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC--CCCCEEEEc
Confidence 444555555441111 12223344455566666666553 26789999999999999987662 356788888
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.+.|+.... .....+..+...+........ .+.+.++.... ++++++++++.++++|.+.+ .+
T Consensus 90 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~~-~~ 152 (350)
T cd00609 90 DPTYPGYEA-AARLAGAEVVPVPLDEEGGFL------------LDLELLEAAKT---PKTKLLYLNNPNNPTGAVLS-EE 152 (350)
T ss_pred CCCchhHHH-HHHHCCCEEEEEecccccCCc------------cCHHHHHhhcC---ccceEEEEECCCCCCCcccC-HH
Confidence 877766533 333333222211111111100 01144444433 57888888887777777655 55
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCc----cccccCCCcchhhhhhhcc-CCccceeeeehH-HHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~----~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~-~~~~~~~~~~~ 234 (368)
.+++|+++|+++|+++|+|++|+++ ..+... ..+..+....+.|++|.++ +|.++|++++++ ++.+.+..
T Consensus 153 ~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~--- 229 (350)
T cd00609 153 ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKK--- 229 (350)
T ss_pred HHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHH---
Confidence 5999999999999999999999876 333321 1222333344568999999 889999999988 78887763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLK--EPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
.....+++.+..++.++..+++... -+...+++.++++++++.|++ .+... .....+.++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~g~~~~~~~~-------- 297 (350)
T cd00609 230 LLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKE----LGPLVVVKPSGGFFLWLDLP-------- 297 (350)
T ss_pred HHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCccccCCCccEEEEEecC--------
Confidence 2233456778888888877777542 122344455555555555544 33222 23445566666653
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCC------CCccccccCCCHHHHHHHHHHHH
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~ 362 (368)
.......+.+.|.++||.+.++. ...+|+.....++|+++++++|+
T Consensus 298 -----~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 298 -----EGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred -----CCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 11234556677777799999873 33456654445999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=186.91 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=186.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.++.+++++.+.+.....| .+.....++++.++++++ +++++++|+|+++++..+++ + .+ +++++..++|...
T Consensus 36 ~~~~~~~~~~~~~~~~~~Y-~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l---~~-~~viv~~P~y~~~ 109 (349)
T PRK07908 36 PPEWLRERLAARLGDLAAY-PSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L---RP-RRAAVVHPSFTEP 109 (349)
T ss_pred CCHHHHHHHHHHhhHhhcC-CCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c---CC-CeEEEeCCCChHH
Confidence 5778999998887653333 233567899999999998 78999999999999998887 3 23 5677778888765
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
.. .+...|.++........... |++++ . ++++++++...+|++|.+++ .++|.+
T Consensus 110 ~~-~~~~~G~~i~~v~~~~~~~~--------------d~~~l----~---~~~~~i~l~np~NPTG~~~~----~~~l~~ 163 (349)
T PRK07908 110 EA-ALRAAGIPVHRVVLDPPFRL--------------DPAAV----P---DDADLVVIGNPTNPTSVLHP----AEQLLA 163 (349)
T ss_pred HH-HHHHcCCEEEeeccCcccCc--------------ChhHh----c---cCCCEEEEcCCCCCCCCCcC----HHHHHH
Confidence 43 33334443322211110011 45533 2 24556666444566777777 667888
Q ss_pred HHHHhCCEEEEehhhhchhcccCccccccC--CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 169 ITKENGALLIFDEVMTGFRLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|+ ++.++|+||+|.++..+......... ....+.||||.++ +|+|+||+++++++++.+.... ..+..++
T Consensus 164 l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~-----~~~~~~~ 237 (349)
T PRK07908 164 LRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGR-----AHWPVGT 237 (349)
T ss_pred HHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcC-----CCCCccH
Confidence 886 47889999999877222222211111 1223458999999 9999999999999988876422 1234556
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
+.+.++.+.++.. ...+.++.++..+..++.+.+.+.+.+.....+..++++|+.+. + ..++.
T Consensus 238 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~-------------~---~~~~~ 300 (349)
T PRK07908 238 LQLEAIAACCAPR-AVAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVP-------------D---AELLR 300 (349)
T ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECC-------------c---HHHHH
Confidence 6655544443300 11222333333333344444444333433233355777787652 1 36788
Q ss_pred HHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 326 RGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 326 ~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+.|.++||.+.++.. .++|+++ .+++++++++++|++++.
T Consensus 301 ~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 301 KRLRERGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAEILK 346 (349)
T ss_pred HHHHhCCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHHHHh
Confidence 889999999998632 2345555 477899999999998874
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=186.01 Aligned_cols=320 Identities=15% Similarity=0.129 Sum_probs=205.0
Q ss_pred cCCCcHHHHHHHHHHHHcCCC--CCCC-------ChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHH--hc
Q 017633 7 LFPSYLQVLAALGETMKKGTS--FGAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARA--FT 73 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~--~~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~--~~ 73 (368)
.|..++.+++++.+.+..... .... .+..+++++.++++++ . .+++++++|+|+++..++..... ..
T Consensus 25 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~ 104 (398)
T TIGR03392 25 TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQ 104 (398)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCC
Confidence 455678899999888754211 1111 1345678899999987 3 68999999999999999865521 34
Q ss_pred CCceEEEEcCCCCCCchhhh---hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 74 GRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
++++|++.++.|++...... ...|..+...+... .+.. |+++++++++ ++++++++...+
T Consensus 105 ~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~-------------~~~~l~~~i~---~~t~lv~i~~~~ 167 (398)
T TIGR03392 105 PGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA-DLLP-------------DIRQLPELLT---PRTRILALGQMS 167 (398)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC-CCCc-------------CHHHHHHHhc---cCceEEEEECcc
Confidence 67889998888876433222 22333332221111 1111 7899999987 467888887777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~ 228 (368)
+++|.+.+ +++|.++|++||+++++|++|+... ....... ..+|+.++| |.+++ .++|++++++++++.
T Consensus 168 n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~--~~~d~~~~s~~K~~gp-~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 168 NVTGGCPD----LARAITLAHQYGAVVVVDGAQGVVH--GPPDVQA--LDIDFYAFSGHKLYGP-TGIGVLYGKTELLEA 238 (398)
T ss_pred ccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCC--CCCChhh--cCCCEEEEecccccCC-CceEEEEEcHHHHhh
Confidence 78898888 9999999999999999999995221 1112222 345777666 97763 358999999888777
Q ss_pred hcCCC---Cc---------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q 017633 229 VAPAG---PM---------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 289 (368)
Q Consensus 229 ~~~~~---~~---------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~ 289 (368)
+.... .. ...-.-+.+..+..++.++++.+.+.++ +.+.++...+++.+.+.+...+ ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~~~l~~~l~~l~g~~~ 317 (398)
T TIGR03392 239 MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLADLAEERLAQLPGFRS 317 (398)
T ss_pred CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 64211 00 0001114566677788888887755443 2444445555555555444332 211
Q ss_pred EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Ccccc--ccCCCHHHHH
Q 017633 290 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFT--SLAHSSDDIQ 355 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~~--~~~~~~~~i~ 355 (368)
......+++++.+. .....++.+.|.++||.++.+.. ..+|+ ...++++|++
T Consensus 318 ~~~~~~~i~~~~~~--------------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~ 383 (398)
T TIGR03392 318 FRCPGSSLLAFDFA--------------GVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVD 383 (398)
T ss_pred eCCCCCcEEEEEeC--------------CcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHH
Confidence 11122345555431 12246788899999999987642 23444 5678999999
Q ss_pred HHHHHHHHHHhh
Q 017633 356 HTITAAEKVLRQ 367 (368)
Q Consensus 356 ~~~~~l~~~l~~ 367 (368)
++++.|++++++
T Consensus 384 ~l~~~l~~~~~~ 395 (398)
T TIGR03392 384 ALVDAVGAALEL 395 (398)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=189.29 Aligned_cols=286 Identities=14% Similarity=0.085 Sum_probs=177.3
Q ss_pred CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 30 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
|+.....+|++.++++++ ++++|++|+|+++++..++..... ++++.|++..++|..+... ....|.++...+...
T Consensus 57 Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~-~g~d~vlv~~P~y~~y~~~-~~~~g~~v~~v~~~~- 133 (354)
T PRK04635 57 YPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE-PGQDSIACFGPTYGMYAIS-AETFNVGVKALPLTA- 133 (354)
T ss_pred CCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHH-HHHcCCEEEEEecCC-
Confidence 344457899999999998 889999999999999999976632 2337899999888764332 233344332222111
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~ 187 (368)
.+.. |++.++. + ++++++++...+|++|.+.+.++ +++|++.|+ +++||+||+|.+| .
T Consensus 134 ~~~~-------------~~~~l~~-~----~~~~li~i~nP~NPTG~~~~~~~-l~~l~~~~~--~~~vivDeay~~~~~ 192 (354)
T PRK04635 134 DYQL-------------PLDYIEQ-L----DGAKLVFICNPNNPTGTVIDRAD-IEQLIEMTP--DAIVVVDEAYIEFCP 192 (354)
T ss_pred CCCC-------------CHHHHHh-c----cCCCEEEEeCCCCCCCccCCHHH-HHHHHHhCC--CcEEEEeCchHhhcc
Confidence 1111 6777762 2 25666666666666777777333 555555554 5999999999887 2
Q ss_pred cccCccc-cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC--H
Q 017633 188 LAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG--T 263 (368)
Q Consensus 188 ~g~~~~~-~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~--~ 263 (368)
....... .......-+.||||.++ +|+|+||+++++++++.+.... ..++.+.+.+.++.++++ +.+ .
T Consensus 193 ~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~-----~~~~~~~~~~~~a~~~l~---~~~~~~ 264 (354)
T PRK04635 193 EYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVI-----APYPVPLPVSEIATQALS---EAGLAR 264 (354)
T ss_pred CcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhc-----CCCCCCHHHHHHHHHHHh---cccHHH
Confidence 2111111 11111223569999999 8999999999999988876321 234567777777666664 221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC---
Q 017633 264 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--- 340 (368)
Q Consensus 264 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--- 340 (368)
.++..+..+..++.+.+.+.+.+.....++.+.++|+.+. +..++.+.|.++||.++.++.
T Consensus 265 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~----------------~~~~~~~~l~~~gv~v~~~~~~~~ 328 (354)
T PRK04635 265 MKFQVLDLNAQGARLQAALSMYGGAKVLEGNGNYVLAKFD----------------DVDAVFKALWDAGIVARAYKDPRL 328 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceECCCCCcEEEEECC----------------CHHHHHHHHHHCCEEEEECCCCCC
Confidence 2222222222234444444444422233445667776541 136788889999999986532
Q ss_pred -CccccccCCCHHHHHHHHHHHHHH
Q 017633 341 -EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 341 -~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
..+|+++ .+.+|+++++++|++-
T Consensus 329 ~~~lRis~-~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 329 ANCIRFSF-SNRAETDKLIGLIRNQ 352 (354)
T ss_pred CCeEEEEe-CCHHHHHHHHHHHHHh
Confidence 3456664 4789999999999764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=182.53 Aligned_cols=321 Identities=17% Similarity=0.135 Sum_probs=188.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 9 PSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
..+|.+++++.+.......++ +++...+|++.++++++. +.++++++|++++..++..... .++|.|++.+++|...
T Consensus 17 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~-~~~~~~~~Gs~a~~~~l~~~~~-~~gd~Vl~~~~~~~~~ 93 (353)
T PLN02721 17 KPTDAMRAAMANAEVDDDVLG-YDPTALRLEEEMAKIFGK-EAALFVPSGTMGNLISVLVHCD-VRGSEVILGDNSHIHL 93 (353)
T ss_pred CCCHHHHHHHHhccCCCcccC-CCHHHHHHHHHHHHHhCC-ceeEEecCccHHHHHHHHHHcc-CCCCeEEEcCccceeh
Confidence 367888888876411222333 355578999999999974 3467777899998877765522 2678899988876433
Q ss_pred chh--hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC----CCCeEEEEEcccCCCCCcccCCHHH
Q 017633 89 ADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 89 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
... .....|..+.. ++..... ..|++++++.+++. .+++++++++++++++|....+.++
T Consensus 94 ~~~~~~~~~~g~~~~~--v~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~ 159 (353)
T PLN02721 94 YENGGISTLGGVHPRT--VKNNEDG------------TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY 159 (353)
T ss_pred hcccchhhhcCceeEe--cCCCcCC------------CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence 221 22222332221 1111100 01799999999742 1367888888877765555555666
Q ss_pred HHHHHHHHHHhCCEEEEehhhhchhcc-cCccccccCCCcc--hhhhhhhccCCcccee-eeehHHHHHHhcCCCCcccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~~~g-~~~~~~~~~~~~d--i~s~sK~~~~G~~iG~-v~~~~~~~~~~~~~~~~~~~ 238 (368)
+++|.++|++||+++|+||+|...... ............| +.++||++++ ++|+ ++.++++++.+......
T Consensus 160 l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~~--- 234 (353)
T PLN02721 160 TDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVIVGSKSFIRKAKRLRKT--- 234 (353)
T ss_pred HHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEEecCHHHHHhHHHHHHh---
Confidence 999999999999999999998521100 0011111111122 4578999974 4666 56788877765421111
Q ss_pred ccCCCCHH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhcc
Q 017633 239 GTLSGNPL--AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 239 ~t~~~~~~--~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
...+.+.. .++++..+++... + ..++..++++.+++.|++. .+... .....++++++.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~---------- 299 (353)
T PLN02721 235 LGGGMRQVGVLAAAALVALQENV-P-KLEDDHKKAKLLAEGLNQI---KGLRVNVAAVETNIVYFDITDG---------- 299 (353)
T ss_pred cCCCeehhHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhC---CCcEEecCCccceEEEEEccCC----------
Confidence 11111222 2223333333211 1 2233344555555555543 12211 1123345666665311
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|.++||.+.+++...+|+ ++.++++|+++++++|++++..
T Consensus 300 -~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 300 -SRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred -ccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 01235789999999999999987666665 4567999999999999998764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=182.72 Aligned_cols=323 Identities=16% Similarity=0.164 Sum_probs=201.6
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCC--CCChhHHHHHHHHHhhCC-CC--CeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.+|-.+.+++.+++.....+. ...+...++++.++++++ .. +.+++++|||++++.++..+. .+++++++
T Consensus 6 l~~pgp~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--~~~~~vlv 83 (363)
T TIGR02326 6 LLTPGPLTTSRTVKEAMLFDWCTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--PKDGKLLV 83 (363)
T ss_pred EecCCCCCCCHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--CCCCeEEE
Confidence 456666666666666654432221 123456677888999887 33 479999999999999996552 35567777
Q ss_pred EcCCCCCCch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
...++++... ......|.++.....+..... |+++++++++.+ ++++.+.+..+.+++|...+
T Consensus 84 ~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~--------------d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~- 147 (363)
T TIGR02326 84 VINGAYGARIVQIAEYLGIPHHVVDTGEVEPP--------------DVVEVEAILAAD-PAITHIALVHCETTTGILNP- 147 (363)
T ss_pred EeCChhhHHHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHHHHHhhC-CCccEEEEEeecCCccccCc-
Confidence 6666666532 222333433332222211111 799999999864 23455555555667888888
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC-cc--
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY-- 236 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~-~~-- 236 (368)
+++|.++|++||+++|+|++|+ + .+.......++.+.-+.+++|+++|+.++|+++++++.++.+..... ..
T Consensus 148 ---i~~I~~l~~~~g~~livD~~~~-~-g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~ 222 (363)
T TIGR02326 148 ---IEAVAKLAHRHGKVTIVDAMSS-F-GGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLD 222 (363)
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-c-cCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeec
Confidence 9999999999999999998885 2 11223344454433345788999876678999998887776542111 00
Q ss_pred ------------ccccCCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccce
Q 017633 237 ------------QAGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGM 297 (368)
Q Consensus 237 ------------~~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~ 297 (368)
....|+.+...+.+..++++.+.+++ ..+++.++++++++.|++. ++..... ..+..
T Consensus 223 ~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 298 (363)
T TIGR02326 223 LYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL----GFEPLLDDEIQSPII 298 (363)
T ss_pred HHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----CCeeccCcccCCceE
Confidence 01234567778888888887765432 3345555555555555443 3221111 11223
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC---Cccccc--cCCCHHHHHHHHHHHHHHHh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---~~~~~~--~~~~~~~i~~~~~~l~~~l~ 366 (368)
.++.+... ...+..++.+.|.++||.++++.. ..+|++ ...+.+|+++++++|++++.
T Consensus 299 ~~~~~~~~-----------~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 299 TSFYSPED-----------PDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred EEEECCCC-----------CCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 34443110 012356789999999999998853 235553 45699999999999998864
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-22 Score=183.11 Aligned_cols=320 Identities=16% Similarity=0.153 Sum_probs=203.1
Q ss_pred cCCCcHHHHHHHHHHHHcCCCC---CC------CChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHH--Hhc
Q 017633 7 LFPSYLQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLAR--AFT 73 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~---~~------~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~--~~~ 73 (368)
.|..++.+.+++.+++...... +. ..+..+++++.++++++ +.++|++++|+|+++..++.... ...
T Consensus 28 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~ 107 (401)
T PRK10874 28 TALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQ 107 (401)
T ss_pred ccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCC
Confidence 3456678999998888652111 10 12456788899999997 47899999999999999986652 134
Q ss_pred CCceEEEEcCCCCCCchhhh---hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 74 GRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
++++|++.++.|++...... ...|..+...+... .+. .|++++++.++ ++++++++..++
T Consensus 108 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~-------------~d~~~l~~~i~---~~t~lv~i~~~~ 170 (401)
T PRK10874 108 PGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DRL-------------PDVDLLPELIT---PRTRILALGQMS 170 (401)
T ss_pred CcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CCc-------------CCHHHHHHhcC---cCcEEEEEeCCc
Confidence 67899999888776433222 22333332221111 111 17999999996 467888887777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
+++|...+ +++|.++|+++|+++|+|++|+-.. .......+ .+|+. +++|.+++ .++|++++++++++.
T Consensus 171 n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~~g~--~~~~~~~~--~~d~~~~s~~K~~gp-~G~G~l~~~~~~~~~ 241 (401)
T PRK10874 171 NVTGGCPD----LARAITLAHQAGMVVMVDGAQGAVH--FPADVQAL--DIDFYAFSGHKLYGP-TGIGVLYGKSELLEA 241 (401)
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEECCccccc--ccCCchhc--CCCEEEEecccccCC-CccEEEEEchHHHhc
Confidence 88898888 9999999999999999999995210 11222233 35654 55697762 257999999988876
Q ss_pred hcCCC---Cc---------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 017633 229 VAPAG---PM---------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAI 289 (368)
Q Consensus 229 ~~~~~---~~---------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~ 289 (368)
+.... .. ...-..+.|..++.++.++++.+.+.++ +++.++...+++.+.+.+.+. +...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 242 MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 64211 00 0001114566677788888887755443 223444444444444433333 2221
Q ss_pred EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Cccc--cccCCCHHHHH
Q 017633 290 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGF--TSLAHSSDDIQ 355 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~--~~~~~~~~~i~ 355 (368)
......+++.+.+. .....++.+.|.++||.++++.. ..+| +...++++|++
T Consensus 321 ~~~~~~~i~~~~~~--------------~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid 386 (401)
T PRK10874 321 FRCQDSSLLAFDFA--------------GVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVD 386 (401)
T ss_pred eCCCCCcEEEEEEC--------------CcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHH
Confidence 11233445555542 11246788899999999987642 2344 35667999999
Q ss_pred HHHHHHHHHHhh
Q 017633 356 HTITAAEKVLRQ 367 (368)
Q Consensus 356 ~~~~~l~~~l~~ 367 (368)
++++.|+++++.
T Consensus 387 ~ll~al~~~~~~ 398 (401)
T PRK10874 387 ALVNAVDRALEL 398 (401)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=181.96 Aligned_cols=312 Identities=17% Similarity=0.169 Sum_probs=193.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCC--ChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 11 YLQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
++.+.+++.+.+. .+.++ .+..+++++.+++.++ + .+.+++++||++++..++... ..+++.|++...+++
T Consensus 11 ~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~--~~~g~~vl~~~~~~~ 85 (356)
T cd06451 11 PPRVLKAMNRPML---GHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL--LEPGDKVLVGVNGVF 85 (356)
T ss_pred CHHHHHHhCCCcc---CCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh--CCCCCEEEEecCCch
Confidence 3455555543321 22222 3447789999999997 3 456889999999999998655 246788888876666
Q ss_pred CC-chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+. ........|.++.......... .|++++++.+++ ++++++++.++++++|.+.+ +++
T Consensus 86 ~~~~~~~~~~~g~~~~~v~~~~~~~--------------~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~----~~~ 145 (356)
T cd06451 86 GDRWADMAERYGADVDVVEKPWGEA--------------VSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNP----LEG 145 (356)
T ss_pred hHHHHHHHHHhCCCeEEeecCCCCC--------------CCHHHHHHHHhc--cCCCEEEEeccCCCcccccC----HHH
Confidence 53 2233333344333221111111 179999999974 25677777666677888888 999
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC---CCCcc------
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP---AGPMY------ 236 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~---~~~~~------ 236 (368)
|.++|+++|+++++|++|+ + .+.......++.+.-+.+.+|+++++.++|+++.++++++.+.. ....+
T Consensus 146 i~~~a~~~~~~li~D~~~~-~-g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (356)
T cd06451 146 IGALAKKHDALLIVDAVSS-L-GGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLL 223 (356)
T ss_pred HHHHHHhcCCEEEEeeehh-c-cCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHH
Confidence 9999999999999999985 1 11112222333333334668999976789999998888777652 00010
Q ss_pred -------ccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEE--ee-ccceEEEEee
Q 017633 237 -------QAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICG--GY-ISGMFGFFFT 303 (368)
Q Consensus 237 -------~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~~ 303 (368)
.....+.+...++++.++++.+...+ ..++..++.+++++.|.+. +..... .. .+.+.++.+
T Consensus 224 ~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~- 298 (356)
T cd06451 224 LKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL----GLKLLAKPELRSPTVTAVLV- 298 (356)
T ss_pred HhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----CCeeccCcccCCCceEEEEC-
Confidence 01222345666677778887765432 3455555566666665553 322111 11 112223332
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCCC----cccc--ccCCCHHHHHHHHHHHHHHHh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFT--SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~----~~~~--~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+...+..++++.|.++ ||.+.++..+ .+|+ ...++++|+++++++|+++++
T Consensus 299 ------------~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 299 ------------PEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ------------CCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 1222357899999998 9999876322 3454 456799999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=181.04 Aligned_cols=328 Identities=16% Similarity=0.155 Sum_probs=198.7
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCC--CChhHHHHHHHHHhhCCC---CCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~---~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.|+.+|-.+.+++.+++.....+.. ..+...++++.++++++. .+.+++++||+++++.++..+. .+++.+++
T Consensus 8 ~~~pgP~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--~~~~~vlv 85 (368)
T PRK13479 8 LLTPGPLTTSRTVREAMLRDWGSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--PRDGKVLV 85 (368)
T ss_pred eecCCCCCCCHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--CCCCeEEE
Confidence 3555555555555555544222221 235678899999999873 2568899999999999997662 35677888
Q ss_pred EcCCCCCCch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
...++++... ......|..+........... |++++++.++++ ++++++.+..+++++|...+
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~--------------d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~- 149 (368)
T PRK13479 86 PDNGAYGARIAQIAEYLGIAHVVLDTGEDEPP--------------DAAEVEAALAAD-PRITHVALVHCETTTGILNP- 149 (368)
T ss_pred EeCCchHHHHHHHHHHcCCcEEEEECCCCCCC--------------CHHHHHHHHHhC-CCCcEEEEEcccCccccccC-
Confidence 7776666432 222333443332222111111 799999998754 24555555555666788888
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc---
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--- 236 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~--- 236 (368)
+++|.++|+++|+++|+|++|. + .........++.+.-+.+++|++.|+.++||+++++++++.+.......
T Consensus 150 ---~~~i~~l~~~~~~~livDa~~~-~-g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~ 224 (368)
T PRK13479 150 ---LDEIAAVAKRHGKRLIVDAMSS-F-GAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLD 224 (368)
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-c-CCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeec
Confidence 9999999999999999997663 3 1112233334433234578899876556899999998887766422110
Q ss_pred -----------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEEEEe
Q 017633 237 -----------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFF 302 (368)
Q Consensus 237 -----------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~ 302 (368)
....++.+..++.++.++++.+.+++..++..++....++.+.+.+.+.++..... .......+.+
T Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 304 (368)
T PRK13479 225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHA 304 (368)
T ss_pred HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEEC
Confidence 11124667777777778887664433223333344444444444443344321111 1111222222
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC---ccccc--cCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---AGFTS--LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~---~~~~~--~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. +...+..++.+.|.++||.++++... .+|++ ...+++|++++++.|++++.+
T Consensus 305 ~~-----------~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 305 PA-----------DPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred CC-----------CCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 01123578999999999999886432 34553 455999999999999999865
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=181.39 Aligned_cols=336 Identities=13% Similarity=0.035 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh
Q 017633 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 92 (368)
Q Consensus 13 ~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~ 92 (368)
.+.+++.+++..+...|.+.....+|+++++++++. +.+++|+||++|+..++... ..++| |++.++.|..+ ...
T Consensus 58 a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~~~-~~vv~t~ggt~A~~~~~~al--l~pGD-Vii~~p~~~~~-~~~ 132 (460)
T PRK13238 58 AMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIFGY-PYTIPTHQGRAAEQILFPVL--IKKGD-VVPSNYHFDTT-RAH 132 (460)
T ss_pred hhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhCC-CcEEECCCHHHHHHHHHHHh--CCCCC-EEccCCcccch-HHH
Confidence 588888888866555556777889999999999963 57899999999999998765 35677 77766655544 444
Q ss_pred hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 93 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
....|...+.......... ...+-.... -|+++|++.++.+. +++++++++..+|++|....+.+.+++|+++|+
T Consensus 133 i~~~G~~~v~v~~~~~~~~---~~~~~f~g~-id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~ 208 (460)
T PRK13238 133 IELNGATAVDLVIDEALDT---GSRHPFKGN-FDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAK 208 (460)
T ss_pred HHHcCCEEEEEeccccccc---cccccccCC-cCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHH
Confidence 4444443332222110000 000000000 18999999998532 468888877766666544555555999999999
Q ss_pred HhCCEEEEehhhhc--h-hccc---Cc-cccccCCCcchhhhhhhcc-CCccc-----e-eeeeh-HHHHHHhcCCCCcc
Q 017633 172 ENGALLIFDEVMTG--F-RLAY---GG-AQEYFGVTPDLTTLGKIIG-GGLPV-----G-AYGGR-RDIMEMVAPAGPMY 236 (368)
Q Consensus 172 ~~~~~li~De~~~~--~-~~g~---~~-~~~~~~~~~di~s~sK~~~-~G~~i-----G-~v~~~-~~~~~~~~~~~~~~ 236 (368)
+||++||+|++|.. . +... .. .....++...+.+++|.+. +|+++ | +++.+ +++++.++......
T Consensus 209 ~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~ 288 (460)
T PRK13238 209 KYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILY 288 (460)
T ss_pred HcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhccccc
Confidence 99999999998842 1 1100 00 0000011112335566665 45544 4 44555 57888876433222
Q ss_pred c-cccCCCCHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 237 Q-AGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 237 ~-~~t~~~~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
+ ..|+++.... +.++..+++...++++.+...++++++.+.|.+ .+++...+..++++.+++..-....
T Consensus 289 ~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~----~G~~~~~p~Gg~~v~~d~~~~~~~~----- 359 (460)
T PRK13238 289 EGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEE----AGVPIQTPAGGHAVFVDAGKFLPHI----- 359 (460)
T ss_pred CCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHH----CCCCeEccCCceEEEEEchhcCCCC-----
Confidence 2 2366665555 555555565443455566666666777766665 4565555566667666664311000
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCCCC-----------------cccccc---CCCHHHHHHHHHHHHHHHh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQFE-----------------AGFTSL---AHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~~~-----------------~~~~~~---~~~~~~i~~~~~~l~~~l~ 366 (368)
......+.+++.+|. +.||.+.+++.. .+|+.+ .-+.++++++.++|+++.+
T Consensus 360 ~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 360 PAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred CCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 001112367888777 569999886411 123332 3388999999999998763
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=163.23 Aligned_cols=313 Identities=21% Similarity=0.243 Sum_probs=209.5
Q ss_pred ceeccCC-CcHHHHHHHHHHHHcC-C-----CC-CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFP-SYLQVLAALGETMKKG-T-----SF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~-~~~~v~~a~~~~~~~~-~-----~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|++|. .||++.++-.++++.. . .+ -.+...+..|...+++..+. ++.++.+++.+|+..++... .++
T Consensus 74 aNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~r-ED~ilypscfdANag~feai--l~p 150 (417)
T KOG1359|consen 74 ANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGR-EDTILYPSCFDANAGAFEAI--LTP 150 (417)
T ss_pred ccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCC-CceEEeccccccchHHHHHh--cCh
Confidence 4688888 8999999999999872 1 11 12346778888888888754 45556667999998888655 234
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNS 153 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~ 153 (368)
.+-|+. +.-.|++..-.+.+.. +..+.|+-+++..+.+. +-+.++++.+...+|.
T Consensus 151 edAvfS-DeLNhASIIdGirLck-----------------------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMD 206 (417)
T KOG1359|consen 151 EDAVFS-DELNHASIIDGIRLCK-----------------------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMD 206 (417)
T ss_pred hhhhhc-cccccchhhhhhHHHh-----------------------hhccchhHHHHHHHHHhhhheEEEEEecceeccC
Confidence 433333 4444554332222211 11122666666555432 2368899999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCC--Ccchh--hhhhhccCCccceeeeehHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
|.+.| |++|.++++|||.+|++||.| ++| .....+..+.+++ .+|++ |++|++|| --.||..++..++.
T Consensus 207 GdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGg-a~GGyttgp~~li~ 281 (417)
T KOG1359|consen 207 GDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGG-ASGGYTTGPKPLIS 281 (417)
T ss_pred CCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcC-CCCCCccCChhHHH
Confidence 99999 999999999999999999999 666 3223345566775 35554 79999973 34678899999999
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.++++.+.+..++ +.+|.....+.++++.+. +.....+...+.+++++.++..+... .....++..+.+.
T Consensus 282 llrqr~RpylFSn-slppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftI-----sg~~hPI~pv~lG--- 352 (417)
T KOG1359|consen 282 LLRQRSRPYLFSN-SLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTI-----SGASHPICPVMLG--- 352 (417)
T ss_pred HHHhcCCceeecC-CCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCcee-----cCCCCCccceecc---
Confidence 9998765555444 333333333444555443 34456677777788877776643221 1111233344332
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc---------ccccCCCHHHHHHHHHHHHHHHh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~---------~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+...+..+++.|+++||++.....|.+ .++..+++||++++++++.++.+
T Consensus 353 ----------da~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 353 ----------DARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred ----------cHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence 444567899999999999987765543 35788899999999999988764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=180.85 Aligned_cols=316 Identities=16% Similarity=0.090 Sum_probs=188.6
Q ss_pred CceeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 2 PQLIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 2 ~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+.++-+ .+|.+++++.+...... .+++.....+|++.++++++- +.+++++||++++..++... ..+++.|++.
T Consensus 5 ~~~~~~~-p~~~~~~a~~~~~~~~~-~Y~~~~~~~~L~~~la~~~g~-~~~~v~~~g~~a~~~~l~~~--~~~gd~vi~~ 79 (333)
T PRK10534 5 RSDTVTR-PSRAMLEAMMAAPVGDD-VYGDDPTVNALQDYAAELSGK-EAALFLPTGTQANLVALLSH--CERGEEYIVG 79 (333)
T ss_pred ccccCCC-CCHHHHHHHHhccCCCc-ccCCCHHHHHHHHHHHHHhCC-CeEEEeCchHHHHHHHHHHh--cCCCCeeEEe
Confidence 4566666 88999999977554433 333778899999999999874 34467778999988887654 3456778876
Q ss_pred cCCCCCCchhh-hhhcC-CCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CCeEEEEEcccCCCCCcc
Q 017633 82 EGCYHGHADPF-LVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 82 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~~~~~~~~~~~~~~g~~ 156 (368)
.++|....... ....+ ......... .++. .|+++++++++.+. .++++++++.+ + +|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~d~~~l~~~i~~~~~~~~~~~lv~l~np-~-~G~v 143 (333)
T PRK10534 80 QAAHNYLYEAGGAAVLGSIQPQPIDAA-ADGT-------------LPLDKVAAKIKPDDIHFARTRLLSLENT-H-NGKV 143 (333)
T ss_pred chhhhhHhcCCchHHhcCceEEeecCC-CCCC-------------CCHHHHHHhhcccCcCcccceEEEEecC-C-CCee
Confidence 55443211110 11111 111110000 0111 17999998886310 14666666532 2 4766
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhchhc---ccCccccccCCCc-chhhhhhhccCCccce-eeeehHHHHHHhcC
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGFRL---AYGGAQEYFGVTP-DLTTLGKIIGGGLPVG-AYGGRRDIMEMVAP 231 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~---g~~~~~~~~~~~~-di~s~sK~~~~G~~iG-~v~~~~~~~~~~~~ 231 (368)
.+.++ +++|.++|++|+++|++||+|..... +... .......+ -+++|||+++. ++| |+++++++++.+..
T Consensus 144 ~~~~~-l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~-~~~~~~~~~~~~s~SK~~~~--~~G~~~~~~~~~i~~~~~ 219 (333)
T PRK10534 144 LPREY-LKQAWEFTRERNLALHVDGARIFNAVVAYGCEL-KEITQYCDSFTICLSKGLGT--PVGSLLVGNRDYIKRARR 219 (333)
T ss_pred cCHHH-HHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCH-HHHHhcCCEEEEEeEcCCCC--cccceEEcCHHHHHHHHH
Confidence 66544 99999999999999999999862211 1110 00011111 24589998863 478 57788988887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
.... .+..++.+.++++++.++++.. ....++..++++++.+.|++ .+.. ...+.++++++.+.
T Consensus 220 ~~~~-~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~----~g~~-~~~~~~nfv~~~~~-------- 283 (333)
T PRK10534 220 WRKM-TGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLRE----AGAD-VMRQDTNMLFVRVG-------- 283 (333)
T ss_pred HHHH-hCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHh----CCCc-cCCCCceEEEEECC--------
Confidence 2111 1111223345566666665421 12233344445556666655 3432 22335667776652
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..+..++.+.|.++||.++++. .+++ .+.++++++++++++|++++.
T Consensus 284 ------~~~~~~~~~~l~~~gi~v~~~~--~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 284 ------EEQAAALGEYMRERNVLINASP--IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ------chhHHHHHHHHHHcCeeecCCc--eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 1235678899999999999874 2333 335799999999999998775
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=179.35 Aligned_cols=304 Identities=12% Similarity=0.095 Sum_probs=182.2
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 112 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (368)
+...++.+.++++++- +.+.+++||++++..++..+. .+++.|++....++... ..+...|.++............
T Consensus 51 ~~~~~~~e~lA~~~g~-~~~~i~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~h~s~~-~~~~~~g~~~~~~~~~~~~~~~ 126 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGM-DEARVTHGAREGKFAVMHALC--KEGDWVVLDGLAHYTSY-VAAERAGLNVKEVPHTGHPEYK 126 (370)
T ss_pred hHHHHHHHHHHHHhCC-CceEEECChHHHHHHHHHHhh--CCCCEEEECCcccHHHH-HHHHHcCCEEEEEecCCcccCC
Confidence 3567888889998863 356678999999999887663 46677887665554433 3333344333221110000000
Q ss_pred CCCCCcccccCCCCHHHHHHHHHcC----CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 113 KGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 113 ~~~~~~~~~~~~~d~~~le~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
.|++++++.++.. .+++++++++.+++++|...+ +++|.++|++||+++|+||+|+....
T Consensus 127 ------------~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~~g~~ 190 (370)
T TIGR02539 127 ------------VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYTVGRM 190 (370)
T ss_pred ------------cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccccCCc
Confidence 1899999998641 125667777777777888888 99999999999999999999963210
Q ss_pred ccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcccccc-----CCCCHHHHHHHHHHHHHHccC-C
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT-----LSGNPLAMTAGIHTLKRLKEP-G 262 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t-----~~~~~~~~~a~~~~l~~~~~~-~ 262 (368)
+ .....++...-+.|+||++++|.|+||+++++++++.+......+..++ .+....++.++.++++...+. .
T Consensus 191 ~--~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~ 268 (370)
T TIGR02539 191 P--VSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVK 268 (370)
T ss_pred C--CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHH
Confidence 1 1111223222346899999976789999999999988875432211111 011122455555555532110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCee-ecCCC
Q 017633 263 TYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPSQ 339 (368)
Q Consensus 263 ~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-~~~~~ 339 (368)
...+..++.+++++.|+++ ++.. ..+..++++.+.+.. .... ...+......+.+.|+++||. ++++.
T Consensus 269 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~s~t~~v~~~~~~--~~~~---~~~~~~~~~~~~~~L~e~GI~~ir~~~ 339 (370)
T TIGR02539 269 RWDEEVKKTRWFVAELEDI----GFIQLGQKPKEHDLVKFETPG--FHEI---AQKHKRRGYFLYEELKKRGIHGIRSGQ 339 (370)
T ss_pred HHHHHHHHHHHHHHHHHhC----CcEEEccCCCcCceEEEECCc--hhHH---hhhhccccHHHHHHHHhCCCccccCCc
Confidence 1122233344566666553 4321 113345565555311 0000 000111235789999999997 77755
Q ss_pred CCccccc-cCCCHHHHHHHHHHHHHHHhh
Q 017633 340 FEAGFTS-LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 340 ~~~~~~~-~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+|++ ...+++|+++++++|++++++
T Consensus 340 ~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 340 TKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 4456665 456999999999999998865
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=188.06 Aligned_cols=206 Identities=14% Similarity=0.063 Sum_probs=137.6
Q ss_pred CChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCcccc
Q 017633 31 PCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 103 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 103 (368)
+.....+|++.+++++ + .+++|++|+|+++++..++..+.. .++|.|++..++|..+...+... |..+...
T Consensus 105 ~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~pGd~Vli~~P~Y~~y~~~~~~~-g~~~v~v 182 (407)
T PLN02368 105 DSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR-GEKDGVLVPVPQYPLYSATISLL-GGTLVPY 182 (407)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC-CCCCEEEEeCCCCccHHHHHHHc-CCEEEEE
Confidence 3344556666666654 3 468999999999999998876521 36789999999998875444433 3333222
Q ss_pred CCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 017633 104 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIA-AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 179 (368)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~~~-~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~ 179 (368)
++....++. -|++++++.++... .+++ +++++| +|++|.+++ .+.+++|+++|++||+++|+
T Consensus 183 ~~~~~~~~~------------~d~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v~s-~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 183 YLEESENWG------------LDVNNLRQSVAQARSKGITVRAMVIINP-GNPTGQCLS-EANLREILKFCYQERLVLLG 248 (407)
T ss_pred ecccccCCC------------CCHHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCccCC-HHHHHHHHHHHHHcCCEEEE
Confidence 221111111 17999999987411 1466 455555 555666565 55599999999999999999
Q ss_pred ehhhhch-hccc--Cccccc----c-------CCCcchhhhhhhc-c-CCccceeee---ehHHHHHHhcCCCCcccccc
Q 017633 180 DEVMTGF-RLAY--GGAQEY----F-------GVTPDLTTLGKII-G-GGLPVGAYG---GRRDIMEMVAPAGPMYQAGT 240 (368)
Q Consensus 180 De~~~~~-~~g~--~~~~~~----~-------~~~~di~s~sK~~-~-~G~~iG~v~---~~~~~~~~~~~~~~~~~~~t 240 (368)
||+|.++ +.+. ..+... + +....+.||||.| + +|||+||++ +++++++.+... ...+
T Consensus 249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~----~~~~ 324 (407)
T PLN02368 249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV----ASIA 324 (407)
T ss_pred EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH----hccc
Confidence 9999888 5442 112111 1 1223356899999 5 899999998 478888877632 1235
Q ss_pred CCCCHHHHHHHHHHHH
Q 017633 241 LSGNPLAMTAGIHTLK 256 (368)
Q Consensus 241 ~~~~~~~~~a~~~~l~ 256 (368)
++.+.+++.++.++++
T Consensus 325 ~~~~~~~Q~aa~~~l~ 340 (407)
T PLN02368 325 LSPNVSGQIFMGLMVN 340 (407)
T ss_pred CCCCcHHHHHHHHHhC
Confidence 5778899999888875
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=179.23 Aligned_cols=318 Identities=18% Similarity=0.120 Sum_probs=193.0
Q ss_pred CceeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 2 PQLIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 2 ~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+-+++| .+|.+++++.++..... .+++.+...++++.++++++ .+++++++||++++..++..+ ..+++.|++.
T Consensus 3 ~~~~~~~-~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l--~~~gd~v~~~ 77 (338)
T cd06502 3 RSDTVTG-PTPEMLEAMAAANVGDD-VYGEDPTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAH--TQPGGSVICH 77 (338)
T ss_pred ccccCCC-CCHHHHHHHHhcccCCc-ccCCCHHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHh--cCCCCeEEEe
Confidence 3567888 88899999988654322 33466788999999999998 668888889999999888765 3467788876
Q ss_pred cCCCCCCchh--hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC----CCeEEEEEcccCCCCCc
Q 017633 82 EGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVVGNSGF 155 (368)
Q Consensus 82 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~----~~~~~~~~~~~~~~~g~ 155 (368)
+++|...... .....|.++...... ... .|++++++++++.. ++++++++++.+++ |.
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~ 141 (338)
T cd06502 78 ETAHIYTDEAGAPEFLSGVKLLPVPGE--NGK-------------LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GT 141 (338)
T ss_pred cCcceeeecCCcHHHHcCceEEeecCC--CCc-------------CCHHHHHHHhhccCCCcCCcceEEEEEeecCC-cc
Confidence 6655432221 122233332221111 111 18999999997521 25666666655554 54
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch---hcccCccccccCCCcc--hhhhhhhccCCcccee-eeehHHHHHHh
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YGGRRDIMEMV 229 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~---~~g~~~~~~~~~~~~d--i~s~sK~~~~G~~iG~-v~~~~~~~~~~ 229 (368)
+. +.+.+++|+++|++||+++|+||+|..+ ..+. ....+...+| +.++||+++. +.|+ ++.++++++.+
T Consensus 142 ~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~~~~~~~~~ 216 (338)
T cd06502 142 VY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVGNRDFIARA 216 (338)
T ss_pred cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEECCHHHHHHH
Confidence 45 4444999999999999999999998432 1121 1222222334 3478999973 2244 45688888777
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.... ...+++++.+++.++++.++++.-......+++.++++++++.|++. +.. .....++++.+.+..
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~v~~~~----- 285 (338)
T cd06502 217 RRRR-KQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GGL-ESEVQTNIVLLDPVE----- 285 (338)
T ss_pred HHHH-HHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CCC-cccccCCeEEEecCC-----
Confidence 6311 11223445566677776666642101223455556666666666553 321 122334454444311
Q ss_pred cchhcccccHHHHHHHHHHH---HcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHH
Q 017633 310 FEDAKKSETTKFARFYRGML---EEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~---~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~ 363 (368)
......++.+.+. ++|+.+.+.+...+| +++.++++|++++++++++
T Consensus 286 -------~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 286 -------ANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred -------ccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 1122344444443 689999876545555 4677799999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=178.33 Aligned_cols=329 Identities=12% Similarity=0.018 Sum_probs=201.3
Q ss_pred eccCCCcHHHHHHHHHHHHcCCC-----C--C-CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 5 IILFPSYLQVLAALGETMKKGTS-----F--G-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~-----~--~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
--.|..++.+++++.++.....+ + + ...+...++++.++++++- +++++++|+++++..++..+ ..+++
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~-~~~~~~~g~t~a~~~al~~l--~~~gd 103 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM-DEARVTHGAREGKFAVMHSL--CKKGD 103 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHh--cCCCC
Confidence 34677888999999998754211 1 1 1234688999999999964 46788999999999999766 34677
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcC----CCCeEEEEEcccCC
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVG 151 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~----~~~~~~~~~~~~~~ 151 (368)
.|++...+++... ..+...|..+...... ...+. .|++++++.++++ .+++++++++.+++
T Consensus 104 ~Vlv~~~~h~s~~-~~~~~~G~~~~~v~~~~~~~~~-------------~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~ 169 (387)
T PRK09331 104 YVVLDGLAHYTSY-VAAERAGLNVREVPKTGYPEYK-------------ITPEAYAEKIEEVKEETGKPPALALLTHVDG 169 (387)
T ss_pred EEEECCCchHHHH-HHHHHcCCEEEEEeCccCcCCC-------------cCHHHHHHHHHHhhhccCCCCEEEEEECCCC
Confidence 8888665544433 2334444433221110 01111 1799999999753 13678888887777
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhc
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~ 230 (368)
++|...+ +++|+++|++||+++|+|++|+ .|. .+....++.+..+.+++|+++++.++|++++++++++.+.
T Consensus 170 ~tG~~~~----l~~I~~la~~~g~~livD~a~~---~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~ 242 (387)
T PRK09331 170 NYGNLAD----AKKVAKVAHEYGIPFLLNGAYT---VGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVF 242 (387)
T ss_pred CCccccc----HHHHHHHHHHcCCEEEEECCcc---cCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcc
Confidence 7888888 9999999999999999999996 222 2233345554456688899997779999999998888765
Q ss_pred CCCCcc-------ccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE--eeccceEEE
Q 017633 231 PAGPMY-------QAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG--GYISGMFGF 300 (368)
Q Consensus 231 ~~~~~~-------~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~ 300 (368)
.....+ .+.+ .++...+++.++++.+.+ ....++..++.+++++.|+++. ++.... ....+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~~~~~~~~~~~i~~~ 317 (387)
T PRK09331 243 RTSRKFGVKEVELLGCT--LRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE---GFKQLGEKPRNHDLMKF 317 (387)
T ss_pred cccCCCcccceeeecee--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEeccCcCcCCeEEE
Confidence 432111 1111 222334444445544322 1123344555556666665530 221110 122334333
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeec-CCCCCcccc-ccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA-PSQFEAGFT-SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~~~~~~~~-~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.. .+.. . .......+.++.+.|.++||... ++....+++ +...+++|+++++++|++++.+
T Consensus 318 ~~~--~~~~--~-~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 318 ETP--SFDE--I-AKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred eCC--chhH--H-hhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 321 0000 0 00011223679999999999843 333333343 4457999999999999998764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=178.53 Aligned_cols=316 Identities=18% Similarity=0.128 Sum_probs=194.5
Q ss_pred CCCcHHHHHHHHHHHHcCCCC----CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh--cCCceEEE
Q 017633 8 FPSYLQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIK 80 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--~~~~~vi~ 80 (368)
.+.+|.+++++.+++...... ....+...+++++++++++ +...+++++||++++..+++.++.. .++++|++
T Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~ 109 (371)
T PRK13520 30 TEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVV 109 (371)
T ss_pred cCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEe
Confidence 457889999998888753111 1122344789999999987 4557888999999999998776543 24567877
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+.+++. ........|.++...+... .+. .|++++++.++. +++.+++...++++|.+.+
T Consensus 110 ~~~~h~s-~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~-- 169 (371)
T PRK13520 110 PESAHFS-FDKAADMLGVELRRAPLDD-DYR-------------VDVKAVEDLIDD---NTIGIVGIAGTTELGQVDP-- 169 (371)
T ss_pred cCcchHH-HHHHHHHcCceEEEecCCC-CCc-------------CCHHHHHHHHhh---CCEEEEEEcCCcCCcccCC--
Confidence 7665443 2222233333322211110 111 179999999973 4555554455566788888
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-h-ccc-C--ccccccCCCcchhhh--hhhccCCccceeeee-hHHHHHHhcCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-R-LAY-G--GAQEYFGVTPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPA 232 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~-~g~-~--~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~-~~~~~~~~~~~ 232 (368)
+++|.++|++||+++++|++|+++ . ... . +..... ..|.+++ .|...+|.|+|+++. ++++++.+...
T Consensus 170 --l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~ 245 (371)
T PRK13520 170 --IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD 245 (371)
T ss_pred --HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHhhccc
Confidence 999999999999999999999755 1 111 1 111112 2354443 475446789998765 56676665421
Q ss_pred CCccccc-----cCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 233 GPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 233 ~~~~~~~-----t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
.++..+. ..+.+...++++.++++.+.+++ ..++..++++++++.|++ .++........+++.+.+.
T Consensus 246 ~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~v~~~~~- 320 (371)
T PRK13520 246 TPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKE----RGFEPVIEPVLNIVAFDDP- 320 (371)
T ss_pred CccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHh----CCCEEecCCCceEEEEecC-
Confidence 1111100 01223445677777887665443 445555555665555554 3332122333445444431
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...++.+.|.++||.+..+..+ .+|+ +..++++|++++++.|++++++
T Consensus 321 ---------------~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 321 ---------------NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred ---------------CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence 2478899999999999886533 3454 4567999999999999988753
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=174.84 Aligned_cols=316 Identities=21% Similarity=0.204 Sum_probs=218.6
Q ss_pred CcHHHHHHHHHHHHcC---CCCCC------CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHH-hcCCce
Q 017633 10 SYLQVLAALGETMKKG---TSFGA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARA-FTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---~~~~~------~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~-~~~~~~ 77 (368)
.+..|.+++.+++... .+.+. .++..++.++.+++.++ + .+.|+||.|.|+++......... ..++|+
T Consensus 34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gde 113 (405)
T COG0520 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDE 113 (405)
T ss_pred CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCE
Confidence 5778999999887652 12121 13467889999999998 5 58999999999999999864421 346699
Q ss_pred EEEEcCCCCCCchhhhhhcCC---CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFLVKAGS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
||+.+-.+|.+.......... .+...+.. .++.. +.++++..++ ++|+++.+..+.+.+|
T Consensus 114 Iv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~-------------~~~~~~~~i~---~~Tklvais~vSn~tG 176 (405)
T COG0520 114 IVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLL-------------DLDALEKLIT---PKTKLVALSHVSNVTG 176 (405)
T ss_pred EEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCc-------------CHHHHHHhcC---CCceEEEEECcccccc
Confidence 999999999988877777533 33333222 23322 7899999887 6899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
.+.| +++|+++||++|+++++|-+|+ .+. ....+.+ ..|++.|| |++.|..++|.+.+++++.+.+..
T Consensus 177 ~~~p----v~~I~~la~~~ga~v~VDaaq~---~~h~~idv~~l--~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P 247 (405)
T COG0520 177 TVNP----VKEIAELAHEHGALVLVDAAQA---AGHLPIDVQEL--GCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEP 247 (405)
T ss_pred ccch----HHHHHHHHHHcCCEEEEECccc---cCccCCCchhc--CCCEEEEcccccccCCCceEEEEEchHHHhhcCC
Confidence 9999 9999999999999999999995 221 2233333 45888777 877766789999999999888742
Q ss_pred C---CCcc----------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 017633 232 A---GPMY----------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 292 (368)
Q Consensus 232 ~---~~~~----------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 292 (368)
. +... ..-.-+++.....+..++++.+++-+ .+.+.+.-+.+.+.+.+.+...+......
T Consensus 248 ~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L~~~~~~~L~~~~~v~i~g 326 (405)
T COG0520 248 FLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHERELTEYLLEGLSELPGVEIYG 326 (405)
T ss_pred cccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhcCCCeEEec
Confidence 1 1100 01111345566666667888776533 23444444444444444443343221111
Q ss_pred ----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc------------cc--cccCCCHHHH
Q 017633 293 ----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------GF--TSLAHSSDDI 354 (368)
Q Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~------------~~--~~~~~~~~~i 354 (368)
....++.|.+.. ....+++..|.++||.++.+..+. +| +.+++|++|+
T Consensus 327 ~~~~~r~~~vsF~v~~--------------~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edi 392 (405)
T COG0520 327 PPDADRGGIVSFNVKG--------------IHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDV 392 (405)
T ss_pred CCcccCceEEEEEeCC--------------CCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHH
Confidence 245666776632 335899999999999999885442 34 4688899999
Q ss_pred HHHHHHHHHHHh
Q 017633 355 QHTITAAEKVLR 366 (368)
Q Consensus 355 ~~~~~~l~~~l~ 366 (368)
+++++.|+++..
T Consensus 393 d~l~~aL~~~~~ 404 (405)
T COG0520 393 DRLLEALKKALA 404 (405)
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-21 Score=178.19 Aligned_cols=314 Identities=14% Similarity=0.120 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHHcCCC---CCCC-----ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH-hcCCceE
Q 017633 9 PSYLQVLAALGETMKKGTS---FGAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-FTGRERI 78 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~---~~~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~-~~~~~~v 78 (368)
..++.+++++.+.+..... ..++ .+..+++++.++++++ ..+.+++++|+++++..++..... ..++++|
T Consensus 28 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~v 107 (397)
T TIGR01976 28 QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEV 107 (397)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEE
Confidence 3577899999988765211 1111 2346799999999997 556799999999998877754422 3467788
Q ss_pred EEEcCCCCCCchhh---hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 79 IKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
++.++.|++..... ....|..+.........+.. |++++++.++ +++++++++.+++++|.
T Consensus 108 l~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~l~~~i~---~~~~lv~i~~~~n~tG~ 171 (397)
T TIGR01976 108 IVTRLDHEANISPWLQAAERAGAKVKWARVDEATGEL-------------HPDDLASLLS---PRTRLVAVTAASNTLGS 171 (397)
T ss_pred EEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCc-------------CHHHHHHhcC---CCceEEEEeCCCCCCCc
Confidence 88777666543322 22234433322221111111 7899999887 46788888888888898
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+.+ +++|.++|++||+++++|++|. .+. ......++.+.-+.+++|.++ +|+|++++++++++.+.....
T Consensus 172 ~~~----~~~i~~~~~~~~~~~ivD~a~~---~~~~~~~~~~~~~d~~~~s~~K~~g--~~~G~l~~~~~~~~~l~~~~~ 242 (397)
T TIGR01976 172 IVD----LAAITELVHAAGALVVVDAVHY---APHGLIDVQATGADFLTCSAYKFFG--PHMGILWGRPELLMNLPPYKL 242 (397)
T ss_pred cCC----HHHHHHHHHHcCCEEEEehhhh---ccccCCCHHHcCCCEEEEechhhcC--CceEEEEEcHHHHhhCCCccc
Confidence 888 9999999999999999999995 221 122223333222347789884 479999999988877664221
Q ss_pred cccc-------ccCCCCHHHHHHHHHHHHHHccCC-------------HHHHHHHHHHHHHHHHHHHHHhcCCceEEe--
Q 017633 235 MYQA-------GTLSGNPLAMTAGIHTLKRLKEPG-------------TYEYLNKITGELTQGIIDAGKKAGHAICGG-- 292 (368)
Q Consensus 235 ~~~~-------~t~~~~~~~~~a~~~~l~~~~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-- 292 (368)
.... ...+.+....++..++++.+.+.+ ..+.+.++...+++.+.+.+.+.+......
T Consensus 243 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 322 (397)
T TIGR01976 243 TFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVA 322 (397)
T ss_pred cCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 1110 111345556666667777664322 134445555555555555444443111111
Q ss_pred ---eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC---------------Cccc--cccCCCHH
Q 017633 293 ---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------EAGF--TSLAHSSD 352 (368)
Q Consensus 293 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---------------~~~~--~~~~~~~~ 352 (368)
..++++.+.+. .....++.+.|.++||.++.+.. ..+| ++..++++
T Consensus 323 ~~~~~~~~~~~~~~--------------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~ 388 (397)
T TIGR01976 323 RLAARVPTVSFTVH--------------GLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAE 388 (397)
T ss_pred CccCCCceEEEEeC--------------CcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHH
Confidence 13445454431 12246789999999999986521 2344 45678999
Q ss_pred HHHHHHHHH
Q 017633 353 DIQHTITAA 361 (368)
Q Consensus 353 ~i~~~~~~l 361 (368)
|++++++.|
T Consensus 389 di~~l~~~l 397 (397)
T TIGR01976 389 EVDRLLEAL 397 (397)
T ss_pred HHHHHHHhC
Confidence 999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=182.45 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=189.4
Q ss_pred eccCCCcHHHHHHHHHHHHcC-CCCCC--------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-
Q 017633 5 IILFPSYLQVLAALGETMKKG-TSFGA--------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT- 73 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~-~~~~~--------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~- 73 (368)
...||.+|++++++..+. .. ..|.. ..+...++++++++.++ +.+.+.++++|+++.+.++..+...+
T Consensus 28 g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~ 106 (398)
T cd00613 28 GTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYH 106 (398)
T ss_pred cccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhccc
Confidence 456888888888766554 22 12221 12456778888888876 45577778878777777765554322
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCC----CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGS----GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
+++.|++ +..+|+.+.......+. .+....+.. .+ ..|++++++.+. +++++++++++
T Consensus 107 ~gd~Vl~-~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~---~~t~~viv~~~ 168 (398)
T cd00613 107 KRNKVLV-PDSAHPTNPAVARTRGEPLGIEVVEVPSDE-GG-------------TVDLEALKEEVS---EEVAALMVQYP 168 (398)
T ss_pred CCCEEEE-cCccCcchHHHHHHhcccCCcEEEEeccCC-CC-------------CcCHHHHHHhcC---CCeEEEEEECC
Confidence 2566665 55677776666655542 221111110 00 017899998886 46888888876
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhcc----CCccceeeeehH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIG----GGLPVGAYGGRR 223 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~----~G~~iG~v~~~~ 223 (368)
+ ++|.+. +++++|+++|++||+++|+|++|.... .......++ +|+ .+++|++. ||+++|++++++
T Consensus 169 ~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~--~~~~~~~~~--~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~ 240 (398)
T cd00613 169 N-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLT--GLKPPGEYG--ADIVVGNLQKTGVPHGGGGPGAGFFAVKK 240 (398)
T ss_pred C-CCceec---chHHHHHHHHHhcCCEEEEEecccccc--CCCChHHcC--CCEEEeeccccCCCCCCCCCceeEEEEhh
Confidence 5 566663 336999999999999999999885320 111112233 454 56788873 368999999998
Q ss_pred HHHHHhcCCC-----------C---------------ccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHH
Q 017633 224 DIMEMVAPAG-----------P---------------MYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGEL 274 (368)
Q Consensus 224 ~~~~~~~~~~-----------~---------------~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l 274 (368)
++++.+.... . ....++++.+++.+.++..+++.+.+++ +.++.+++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l 320 (398)
T cd00613 241 ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYL 320 (398)
T ss_pred hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 8877652110 0 0112344555666666666666654433 346667777777
Q ss_pred HHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC---CCCcc--ccccCC
Q 017633 275 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAG--FTSLAH 349 (368)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~~~--~~~~~~ 349 (368)
+++|+++.... .+ .......+++.+.. ....+..++++.|+++||.+... +...+ .++.++
T Consensus 321 ~~~L~~~~~~~-~~--~~~~~~~v~~~~~~-----------~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~ 386 (398)
T cd00613 321 AKRLKEVGGVL-PF--NGPFFHEFVLRLPP-----------LYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETE 386 (398)
T ss_pred HHHHHhcCCcc-cC--CCCeeEEEEEEcCC-----------cchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCC
Confidence 77776642111 00 00111222333311 00234678999999999988653 22333 467899
Q ss_pred CHHHHHHHHHHH
Q 017633 350 SSDDIQHTITAA 361 (368)
Q Consensus 350 ~~~~i~~~~~~l 361 (368)
+++|++++++.|
T Consensus 387 t~edid~~~~~L 398 (398)
T cd00613 387 TKEELDALLEAL 398 (398)
T ss_pred CHHHHHHHHHhC
Confidence 999999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=179.03 Aligned_cols=322 Identities=14% Similarity=0.135 Sum_probs=204.3
Q ss_pred ccCCCcHHHHHHHHHHHHcCC-CCCC--CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 6 ILFPSYLQVLAALGETMKKGT-SFGA--PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~-~~~~--~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.++.++..+.+++.+++.... .+.. ..+...++++.+++.++ + .+.++++++|+++++.++... ..++|+|++
T Consensus 12 l~~pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--~~~Gd~Vlv 89 (401)
T PLN02409 12 LFVPGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--LSPGDKVVS 89 (401)
T ss_pred eccCCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--CCCCCEEEE
Confidence 455566555555555554421 2211 23567788888888887 3 357899999999999988655 357889999
Q ss_pred EcCCCCCCchhh-hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccC
Q 017633 81 FEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 158 (368)
.+.++++..... +...|..+.....+..... |++++++++++++ ++++++++.++.+.+|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~--------------~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~ 155 (401)
T PLN02409 90 FRIGQFSLLWIDQMQRLNFDVDVVESPWGQGA--------------DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND 155 (401)
T ss_pred eCCCchhHHHHHHHHHcCCceEEEECCCCCCC--------------CHHHHHHHHhhCcCCCccEEEEEeecccccccCC
Confidence 987776654322 2222333322221111111 7999999998531 36788888877777899888
Q ss_pred CHHHHHHHHHH--HHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC-
Q 017633 159 KPDFLNAIRRI--TKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP- 234 (368)
Q Consensus 159 ~~~~l~~i~~l--~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~- 234 (368)
+++|.++ |+++|+++|+|++|+ .|. ....+.++.+.-+.+.+|+++++.++|++++++++++.+.....
T Consensus 156 ----~~~i~~l~~~~~~g~~~vvD~v~s---~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~ 228 (401)
T PLN02409 156 ----LAGVRKLLDCAQHPALLLVDGVSS---IGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSP 228 (401)
T ss_pred ----HHHHHHHHhhhccCcEEEEEcccc---cCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCC
Confidence 8899999 999999999999996 222 23334455533344668999876789999999988877653211
Q ss_pred -ccc----------cc---cCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEe---e-
Q 017633 235 -MYQ----------AG---TLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGG---Y- 293 (368)
Q Consensus 235 -~~~----------~~---t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~- 293 (368)
.+. .+ .++++...+.++.++++.+.+.+ ..++.+++.+++++.|++ .++..... .
T Consensus 229 ~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~----~g~~~~~~~~~~~ 304 (401)
T PLN02409 229 RVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA----WGLKLCTKKPEWR 304 (401)
T ss_pred CeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----cCCeeccCChhhc
Confidence 100 11 33667777888888998875433 344555555555555544 33221111 1
Q ss_pred ccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCC----cccc--ccCCCHHHHHHHHHHHHHHHh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFE----AGFT--SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~----~~~~--~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...+.++.+ |+..+..++.+.|+ ++||.+..+... .+|+ ...++++|+..++++|++++.
T Consensus 305 s~~v~~~~~-------------p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~ 371 (401)
T PLN02409 305 SDTVTAVVV-------------PEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLK 371 (401)
T ss_pred ccceEEEeC-------------CCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 122334433 22333467877776 559999987432 2443 456799999999999999886
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 372 ~ 372 (401)
T PLN02409 372 D 372 (401)
T ss_pred H
Confidence 5
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-21 Score=174.36 Aligned_cols=315 Identities=16% Similarity=0.145 Sum_probs=198.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC---CC------CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHh-
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF- 72 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~---~~------~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~- 72 (368)
+..|..++.+++++.+.+...... +. ..+...++++.++++++ . .+++++++|+++++..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 345667788999998887553211 11 12445678899999987 4 679999999999999999766321
Q ss_pred cCCceEEEEcCCCCCCchhhhh---hcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 73 TGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
.+++.|++.+..|.+....... ..|..+....... .+.. |++++++.+. ++++++++..+
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~l~---~~~~~v~~~~~ 148 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DGQL-------------DLEALEKLLT---ERTKLVAVTHV 148 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CCCc-------------CHHHHHHHhc---CCceEEEEeCc
Confidence 1567888877666654322111 2233332222211 1111 7999999987 36778877777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhh--hhccCCccceeeeehHHHH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~ 226 (368)
++++|.+.+ +++|.++|++||++|++|++|+. +.. +... ...+|++++| |++++ .++|+++++++++
T Consensus 149 ~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~~---~~~~~~~~--~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~ 218 (373)
T cd06453 149 SNVLGTINP----VKEIGEIAHEAGVPVLVDGAQSA---GHMPVDVQ--DLGCDFLAFSGHKMLGP-TGIGVLYGKEELL 218 (373)
T ss_pred ccccCCcCC----HHHHHHHHHHcCCEEEEEhhhhc---Cceeeecc--ccCCCEEEeccccccCC-CCcEEEEEchHHh
Confidence 777888888 99999999999999999999962 111 1122 2345777666 99986 7799999998888
Q ss_pred HHhcCCCC-cc-----------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 227 EMVAPAGP-MY-----------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 227 ~~~~~~~~-~~-----------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
+.+..... .. .....+.+..+..+..++++.+.+.++ +.+.++...+++.+.+.+.+.+..
T Consensus 219 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~~~l~~~~~~ 297 (373)
T cd06453 219 EEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYALERLSEIPGV 297 (373)
T ss_pred hcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHhcCCCe
Confidence 77663210 00 001124455666677777887765544 344444444555554444434311
Q ss_pred eEE---eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Ccccc--ccCCCH
Q 017633 289 ICG---GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFT--SLAHSS 351 (368)
Q Consensus 289 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~~--~~~~~~ 351 (368)
... ...++++++.+. ..+..++.+.|.++||.+.++.. ..+|+ ...+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~ 363 (373)
T cd06453 298 RVYGDAEDRAGVVSFNLE--------------GIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTE 363 (373)
T ss_pred EEeCCccccCCeEEEEEC--------------CcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCH
Confidence 111 122445555541 12346889999999999976542 23444 455799
Q ss_pred HHHHHHHHHH
Q 017633 352 DDIQHTITAA 361 (368)
Q Consensus 352 ~~i~~~~~~l 361 (368)
+|++++++.|
T Consensus 364 ~di~~~~~~l 373 (373)
T cd06453 364 EEIDALVEAL 373 (373)
T ss_pred HHHHHHHhhC
Confidence 9999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=174.37 Aligned_cols=321 Identities=17% Similarity=0.158 Sum_probs=198.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCC--C-CC------CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHH--Hhc
Q 017633 7 LFPSYLQVLAALGETMKKGTS--F-GA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR--AFT 73 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~--~-~~------~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~--~~~ 73 (368)
.|..++.+.+++.+.+..... . +. ..+..+++++.++++++ + .+++++++|+++++..++..+. ...
T Consensus 27 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~ 106 (403)
T TIGR01979 27 TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLK 106 (403)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCC
Confidence 444667899999887764211 1 11 11345688899999998 4 5799999999999998886542 134
Q ss_pred CCceEEEEcCCCCCCchhhh---hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 74 GRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
+++.|++.+..++....... ...|..+...+.. ..+.. |++++++.++ ++++++++..++
T Consensus 107 ~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~-~~~~~-------------~~~~l~~~i~---~~~~lv~~~~~~ 169 (403)
T TIGR01979 107 AGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD-DDGTL-------------DLDDLEKLLT---EKTKLVAITHVS 169 (403)
T ss_pred CCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-CCCCC-------------CHHHHHHHhc---cCCeEEEEEccc
Confidence 57788887776665433222 2223332222111 11111 7899999887 467888887777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHh
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
+++|...+ +++|.++|++||+++|+|++|+. |. ......++.+.-+.+++|.++ +.++|++++++++++.+
T Consensus 170 ~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~---g~~~~~~~~~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~ 241 (403)
T TIGR01979 170 NVLGTVNP----VEEIAKLAHQVGAKVLVDGAQAV---PHMPVDVQALDCDFYVFSGHKMYG-PTGIGVLYGKEELLEQM 241 (403)
T ss_pred ccccccCC----HHHHHHHHHHcCCEEEEEchhhc---CccccCccccCCCEEEEecccccC-CCCceEEEEchHHHhcC
Confidence 78898888 99999999999999999999952 21 122233333222356789775 33589998988877765
Q ss_pred cCCCC---c---------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 017633 230 APAGP---M---------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291 (368)
Q Consensus 230 ~~~~~---~---------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 291 (368)
..... . .....-+.+..+++++.++++.+.+.++ +.+.++...+++.+.+.+...+.....
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~-~~~~~~~~~l~~~l~~~l~~~~g~~~~ 320 (403)
T TIGR01979 242 PPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGL-ENIEAHEHELTAYALERLGEIPGLRIY 320 (403)
T ss_pred CCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 42100 0 0001114566677777788877754332 333444444444444443333211111
Q ss_pred e-----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC------------CCcccc--ccCCCHH
Q 017633 292 G-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFT--SLAHSSD 352 (368)
Q Consensus 292 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------~~~~~~--~~~~~~~ 352 (368)
. ..++++.+.+.. .+..++.+.|.++||.++.+. ...+|+ ...++++
T Consensus 321 ~~~~~~~~~~~v~~~~~~--------------~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~ 386 (403)
T TIGR01979 321 GPRDAEDRGGIISFNVEG--------------VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEE 386 (403)
T ss_pred CCCCccccCceEEEEeCC--------------cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHH
Confidence 1 124555555421 123578889999999998653 123444 5567999
Q ss_pred HHHHHHHHHHHHHhh
Q 017633 353 DIQHTITAAEKVLRQ 367 (368)
Q Consensus 353 ~i~~~~~~l~~~l~~ 367 (368)
|++++++.|+++++.
T Consensus 387 di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 387 DIDALVEALKKVRKF 401 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=173.86 Aligned_cols=320 Identities=14% Similarity=0.137 Sum_probs=199.4
Q ss_pred CCCcHHHHHHHHHHHHcCCC---CCCC------ChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHH--HhcC
Q 017633 8 FPSYLQVLAALGETMKKGTS---FGAP------CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLAR--AFTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~---~~~~------~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~--~~~~ 74 (368)
+..++.+++++.+.+..... .+.. .+..+++++.++++++ +.+++++++|+|+++..++.... ...+
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~ 112 (406)
T PRK09295 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 112 (406)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCC
Confidence 34667899999888864211 1111 2446688899999987 46899999999999998886431 2346
Q ss_pred CceEEEEcCCCCCCchhhhhh---cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++|++.+..|+......... .|..+...+... .+.. |+++++++++ ++++++++..+++
T Consensus 113 gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~~~-------------d~~~l~~~i~---~~t~lv~l~~~~n 175 (406)
T PRK09295 113 GDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP-DGTL-------------QLETLPALFD---ERTRLLAITHVSN 175 (406)
T ss_pred cCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCCC-------------CHHHHHHhcC---CCcEEEEEecchh
Confidence 788998887777654332222 233222211111 1111 7899999886 4678888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
++|.+.+ +++|.++|+++|+++++|++|+... .......++.+.-+.+++|.++ +.++|++++++++.+.+..
T Consensus 176 ~tG~~~~----~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~ 248 (406)
T PRK09295 176 VLGTENP----LAEMIALAHQHGAKVLVDGAQAVMH--HPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPP 248 (406)
T ss_pred cccccCC----HHHHHHHHHHcCCEEEEEcccccCc--cccCchhcCCCEEEeehhhccC-CCCcEEEEEchHhHhhCCC
Confidence 8899998 9999999999999999999995211 1222333333222345679665 3358999999888766542
Q ss_pred C---CCc----------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEE
Q 017633 232 A---GPM----------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICG 291 (368)
Q Consensus 232 ~---~~~----------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~ 291 (368)
. +.. ...-+-+.+..+..++.++++.+.+.++ +.+.++.+.+.+.+.+.+.+.+ .....
T Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~l~~~~~~~~~~ 327 (406)
T PRK09295 249 WEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL-NNIAEYEQNLMHYALSQLESVPDLTLYG 327 (406)
T ss_pred cccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 1 000 0011225677788888899988865343 3334444444444444333332 21111
Q ss_pred e-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC------------ccc--cccCCCHHHHHH
Q 017633 292 G-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------AGF--TSLAHSSDDIQH 356 (368)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~------------~~~--~~~~~~~~~i~~ 356 (368)
+ ...+++.+.+. .....++.+.|.++||.++.+..+ .+| +..+++++|+++
T Consensus 328 ~~~~~~iv~~~~~--------------~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~ 393 (406)
T PRK09295 328 PQNRLGVIAFNLG--------------KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR 393 (406)
T ss_pred CCCCceEEEEEEC--------------CcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHH
Confidence 1 12334444431 112356788888999999875321 234 467789999999
Q ss_pred HHHHHHHHHh
Q 017633 357 TITAAEKVLR 366 (368)
Q Consensus 357 ~~~~l~~~l~ 366 (368)
+++.|+++..
T Consensus 394 l~~~l~~i~~ 403 (406)
T PRK09295 394 LVAGLQRIHR 403 (406)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=175.32 Aligned_cols=321 Identities=16% Similarity=0.078 Sum_probs=192.4
Q ss_pred ccCCCcHHHHHHHHHHHHcCC-CCCC-------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh--cC
Q 017633 6 ILFPSYLQVLAALGETMKKGT-SFGA-------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TG 74 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~-~~~~-------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--~~ 74 (368)
..+..++++++++.+++.... .... ..+..+++++.++++++ +.+++++++|+++++..++..+... .+
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~ 87 (381)
T PRK02948 8 ATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQN 87 (381)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 345577899999988886521 1111 12456788899999997 6789999999999999988665321 24
Q ss_pred CceEEEEcCCCCCCchhh--hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 75 RERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
++.|++.+..++...... +...|.++...+... .+. .|++++++.++ +++++++++..+++
T Consensus 88 g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~-------------~d~~~l~~~l~---~~~~lv~~~~~~n~ 150 (381)
T PRK02948 88 KKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK-SGL-------------IRLVDLERAIT---PDTVLASIQHANSE 150 (381)
T ss_pred CCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC-CCC-------------CCHHHHHHhcC---CCCEEEEEECCcCC
Confidence 556665443333322222 222233222211111 111 17999998886 35778888888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHH-HHHhc
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI-MEMVA 230 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~-~~~~~ 230 (368)
+|.+.+ +++|.++|+++|+++++|++|+ + |. ......++.+.-+.+++|.+++ ..+|++++++++ +..+.
T Consensus 151 tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~--g~~~~~~~~~~~d~~~~s~~K~~gp-~G~G~l~~~~~~~~~~~~ 222 (381)
T PRK02948 151 IGTIQP----IAEIGALLKKYNVLFHSDCVQT-F--GKLPIDVFEMGIDSLSVSAHKIYGP-KGVGAVYINPQVRWKPVF 222 (381)
T ss_pred cEeehh----HHHHHHHHHHcCCEEEEEChhh-c--cccccCcccCCCCEEEecHHhcCCC-CcEEEEEEcCCCCCCCcc
Confidence 999988 9999999999999999998874 2 21 2223344443334578998762 237888777654 11111
Q ss_pred CCC-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-c----cceEEEEeec
Q 017633 231 PAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-I----SGMFGFFFTE 304 (368)
Q Consensus 231 ~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 304 (368)
... .......++.|.++++++.++++.+.+ ..+...++...+++.+.+.+.+.+......+ . ..++.+.+
T Consensus 223 ~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~-- 298 (381)
T PRK02948 223 PGTTHEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTI-- 298 (381)
T ss_pred cCCCCCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEe--
Confidence 000 000112346788888888888876532 2333334444444444443333333212111 1 11222222
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------Ccccc--ccCCCHHHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT--SLAHSSDDIQHTIT 359 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~~--~~~~~~~~i~~~~~ 359 (368)
......++...|.++||.++.+.. ..+|+ ...++++|++++++
T Consensus 299 ------------~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~ 366 (381)
T PRK02948 299 ------------KGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIH 366 (381)
T ss_pred ------------CCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHH
Confidence 111246677788889999986532 23443 45679999999999
Q ss_pred HHHHHHhh
Q 017633 360 AAEKVLRQ 367 (368)
Q Consensus 360 ~l~~~l~~ 367 (368)
.|++++++
T Consensus 367 ~l~~~~~~ 374 (381)
T PRK02948 367 ALETIGNQ 374 (381)
T ss_pred HHHHHHHH
Confidence 99988754
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=166.79 Aligned_cols=317 Identities=18% Similarity=0.178 Sum_probs=201.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCC----------ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHH-Hhc--C
Q 017633 9 PSYLQVLAALGETMKKGTSFGAP----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR-AFT--G 74 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~----------~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~-~~~--~ 74 (368)
.-+|+++++|..++... ||-| ....++.++.+++..+ +++.++||+||||+++++|+-+. .+. +
T Consensus 12 p~~~~v~~~m~~~~~~~--fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~ 89 (386)
T COG1104 12 PVDPEVLEAMLPYLTEV--FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQ 89 (386)
T ss_pred CCCHHHHHHHHHHHHhh--cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhccc
Confidence 36789999999988773 2222 2456778888999998 67999999999999999996532 221 2
Q ss_pred CceEEEEcCCCCCCchhhhhhc-CCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKA-GSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+.+-|+....-|....-.+... ..++.+.+++. ..+.. |+++|+++++ +++.+|.+...||.
T Consensus 90 ~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v-------------~~e~L~~al~---~~T~LVSim~aNnE 153 (386)
T COG1104 90 KGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLV-------------DLEQLEEALR---PDTILVSIMHANNE 153 (386)
T ss_pred CCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeE-------------cHHHHHHhcC---CCceEEEEEecccC
Confidence 3444555556666555444433 22222222211 23333 8999999999 57999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHH-HHHhc
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI-MEMVA 230 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~-~~~~~ 230 (368)
.|.+.| +++|.++|+++++++++|.+|+ .|+. ..+......|+.|||-..-+| =++|+++.++.+ .+.+.
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQa---~Gki-pi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i 225 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQA---VGKI-PIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPLI 225 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhhh---cCce-eccccccCcceEEeehhhccCCCceEEEEECCCCccCcee
Confidence 999999 9999999999999999999996 4543 222333346999999444333 478988876644 23232
Q ss_pred CC-C--CccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeccceEEEEeec
Q 017633 231 PA-G--PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTE 304 (368)
Q Consensus 231 ~~-~--~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 304 (368)
.. + +....+| .|..+.++...+++...+ +....++...++++.+.|.+.....-+. .......+.+.+.+
T Consensus 226 ~GGgQE~g~RsGT--env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f-- 301 (386)
T COG1104 226 HGGGQERGLRSGT--ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF-- 301 (386)
T ss_pred ccCcCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEe--
Confidence 21 1 1233343 466666666666665432 2334455555555555555431111000 01112223333333
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-----------------------cc--cccCCCHHHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-----------------------GF--TSLAHSSDDIQHTIT 359 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-----------------------~~--~~~~~~~~~i~~~~~ 359 (368)
....++.+.-.|..+||.++.|+.+. +| +...++++|++++++
T Consensus 302 ------------~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~ 369 (386)
T COG1104 302 ------------PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAE 369 (386)
T ss_pred ------------CCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHH
Confidence 23345777888888899999874321 13 345679999999999
Q ss_pred HHHHHHhh
Q 017633 360 AAEKVLRQ 367 (368)
Q Consensus 360 ~l~~~l~~ 367 (368)
.+++++++
T Consensus 370 ~l~~~i~~ 377 (386)
T COG1104 370 ALKEIIKR 377 (386)
T ss_pred HHHHHHHH
Confidence 99999865
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=170.70 Aligned_cols=327 Identities=12% Similarity=0.056 Sum_probs=192.2
Q ss_pred cCCCcHHHHHHHHHHHHcCCC----CC----CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 7 LFPSYLQVLAALGETMKKGTS----FG----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~----~~----~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
=|+-.|.+++++.++...... .+ ..++...++++.++++++- +++++++|+++++..++... ..+++.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~-~~i~~~~g~t~al~~~l~~~--~~~gd~V 86 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM-DEARVTPGAREGKFAVMHSL--CEKGDWV 86 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC-ceEEEeCCHHHHHHHHHHHh--cCCCCEE
Confidence 356677888888887743211 11 1134678999999999865 78999999999999998765 3467788
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCC-CCCCCCCCcccccCCCCHHHHHHHHHcCC----CCeEEEEEcccCCCC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVVGNS 153 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~~~~~~----~~~~~~~~~~~~~~~ 153 (368)
++...+++... ..+...|..+......... ... |+++++++++... ++++++++...++++
T Consensus 87 l~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t 152 (361)
T cd06452 87 VVDGLAHYTSY-VAAERAGLNVREVPNTGHPEYHI-------------TPEGYAEVIEEVKDEFGKPPALALLTHVDGNY 152 (361)
T ss_pred EEcCCcchHHH-HHHHhcCCEEEEEecCCCCCccc-------------CHHHHHHHHHHHhhccCCCceEEEEECCCCCC
Confidence 88766655543 2333334433322221111 011 7999999887421 256777776666667
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~ 232 (368)
|...+ +++|.++|+++|+++|+|++|. .|. .+....++.+..+.|++|+++++.|+|++++++++++.+...
T Consensus 153 G~~~~----~~~i~~~~~~~~~~vivD~a~~---~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~ 225 (361)
T cd06452 153 GNLHD----AKKIAKVCHEYGVPLLLNGAYT---VGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRT 225 (361)
T ss_pred eeecc----HHHHHHHHHHcCCeEEEECCcc---cCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhcc
Confidence 87777 9999999999999999999996 221 123334454445668999998767999999999888887643
Q ss_pred CCcccc---c--cCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeccceEEEEeec
Q 017633 233 GPMYQA---G--TLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFTE 304 (368)
Q Consensus 233 ~~~~~~---~--t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~ 304 (368)
...+.. . ..+.++..+.++.++++.+.+ -....+..++.+++++.|+++ .++... .....+++.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l---~g~~v~~~~~~~~n~~~~~~~- 301 (361)
T cd06452 226 SQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI---EGIKQLGEKPKNHDLMFFETP- 301 (361)
T ss_pred ccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEECCCCCCCceEEEEcC-
Confidence 321100 0 001122234444455543321 011122223334555555442 022111 1123334444331
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-cccc-ccCCCHHHHHHHHHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFT-SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-~~~~-~~~~~~~~i~~~~~~l~~~l 365 (368)
. +.+........+.++.+.|+++||.+...+.. .+|+ ....++++++.++++|+++.
T Consensus 302 ~----~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 302 S----FDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred C----cchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 0 00000000112346999999999996443322 2343 23469999999999999764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=166.22 Aligned_cols=304 Identities=14% Similarity=0.106 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHhhCC-----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 33 LLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
...+++++.+...-+ +++++++++|+|.|++..+.++. .+++..+++.|.|.|...-..--+|..+....+..
T Consensus 125 ~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa--dpgdafLvPtPyY~gfdrdl~~rTgveivpv~c~S 202 (471)
T KOG0256|consen 125 SFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSS 202 (471)
T ss_pred HHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc--CCCceeeecCCCCCcccccceeccCceEEEEEeec
Confidence 344444444444332 47899999999999999886663 47888899888888763332222333333333333
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 184 (368)
..++.. +.+++|+++.+ ...+++.+++..+.|+-|.+.++++ +..+.+++.++++.||+||+|+
T Consensus 203 s~~f~i------------tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~-L~~ll~Fa~~kniHvI~DEIya 269 (471)
T KOG0256|consen 203 SNGFQI------------TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEE-LISLLNFASRKNIHVISDEIYA 269 (471)
T ss_pred CCCccc------------cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHH-HHHHHHHHhhcceEEEeehhhc
Confidence 333221 68888888875 2245665555444444566565555 9999999999999999999997
Q ss_pred ch-hcc-cCcccccc----CCCcc----hhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHH
Q 017633 185 GF-RLA-YGGAQEYF----GVTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252 (368)
Q Consensus 185 ~~-~~g-~~~~~~~~----~~~~d----i~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~ 252 (368)
+- +.. ++.++... ...+| +.++||-|| +|+|+|.+.. ++.+........ +-...++..|..+.
T Consensus 270 ~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kms-----sf~~vSs~tQ~~la 344 (471)
T KOG0256|consen 270 GSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMS-----SFGLVSSQTQYLLA 344 (471)
T ss_pred ccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHh-----hccCCcHHHHHHHH
Confidence 64 222 22121111 11344 458999999 9999999966 677777766321 22244566666654
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHHHHH---HHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHH
Q 017633 253 HTLKRLKEPGT-YEYLNKITGELTQGI---IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 328 (368)
Q Consensus 253 ~~l~~~~~~~~-~~~~~~~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (368)
..+. ++.+ ...++++.++++.+- .+-+...+.+..-.+.|.+.|++++.-..+. .-..-.++.+.+
T Consensus 345 ~LLS---D~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~-------tfe~El~Lw~~i 414 (471)
T KOG0256|consen 345 SLLS---DEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSL-------TFEGELELWERI 414 (471)
T ss_pred HHhc---hHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcC-------ChHHHHHHHHHH
Confidence 4443 3332 122333333333332 2233445777778888999999998643211 111124677888
Q ss_pred HHc-CeeecCCCCC------ccccccCC-CHHHHHHHHHHHHHHHh
Q 017633 329 LEE-GVYFAPSQFE------AGFTSLAH-SSDDIQHTITAAEKVLR 366 (368)
Q Consensus 329 ~~~-Gi~~~~~~~~------~~~~~~~~-~~~~i~~~~~~l~~~l~ 366 (368)
+++ ++.++||... ++|+.++. .++.++-++++|+..+.
T Consensus 415 ~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 415 LDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred HHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 877 9999998543 34555555 55556669999998764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=159.97 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=207.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc-CCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE-GCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~-~~~~~~ 88 (368)
...+++++|.++......|+ .++...+|.++.++.++ .+..+|++|||.++.++++..+.. ++..||+-+ ...|-+
T Consensus 34 PTdeMr~am~eA~vgDdVyG-eD~tt~rLE~~vA~l~G-KEAgLFv~SGTmgNllaIm~Hc~~-rg~eii~gd~~HI~~~ 110 (384)
T KOG1368|consen 34 PTDEMRRAMAEASVGDDVYG-EDPTTNRLEQRVAELFG-KEAGLFVPSGTMGNLLAIMVHCHQ-RGSEIIVGDRAHIHRY 110 (384)
T ss_pred ChHHHHHHHhhcccCccccc-CCccHHHHHHHHHHHhC-ccceeeecccccccHHHHHHHhcC-CCceEEeccchheeeh
Confidence 34578888888765545555 45667899999999985 466777778999999999877654 444666633 222222
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc-----CCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
..+.+...+...+..-.+..++.. |++++|+++.. |.+.++.+.+|...++.|....|.||+
T Consensus 111 E~gg~s~l~gv~~~tv~~e~dgtm-------------~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~ 177 (384)
T KOG1368|consen 111 EQGGISQLAGVHVRTVKNENDGTM-------------DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEEL 177 (384)
T ss_pred hccChhhhccceeEeeeeCCCCee-------------eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHH
Confidence 222222211111110012223322 79999999984 346789999999999888788889999
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcch--hhhhhhccCCccceee-eehHHHHHHhcCCCCccccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v-~~~~~~~~~~~~~~~~~~~~ 239 (368)
+++.+||++||+.|++|-+-..= ..........+....|- +++||++++ |+|.+ ++++++++..++.+ ..+++
T Consensus 178 ~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSViVG~k~FI~kA~~~R-KalGG 254 (384)
T KOG1368|consen 178 DRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSVIVGSKDFIDKARHFR-KALGG 254 (384)
T ss_pred HHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccEEEccHHHHHHHHHHH-HHhcC
Confidence 99999999999999999555210 01111122222222233 468999986 78877 66888877655322 12345
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCcccchhccccc
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.+..+-+.+++++.+++ +....++.-++++..+.+.++... .....++ ...+++.+.+... .
T Consensus 255 GmRQsGvLaaaaLval~--~~~~~L~~dHk~A~~lAe~~~~~~---~i~v~v~a~etNiv~~~l~q~------------~ 317 (384)
T KOG1368|consen 255 GMRQSGVLAAAALVALD--ENVPLLRADHKRAKELAEYINTPE---EIRVEVPAVETNIVNMVLCQA------------R 317 (384)
T ss_pred chhHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhcccc---ceeeecchhhcceeeeecccc------------c
Confidence 55556677777776665 223356777778888877777421 1233333 4455666665432 2
Q ss_pred HHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~ 364 (368)
.+.+++++.+.++||.+.++.....| +....++++++.+...+.+.
T Consensus 318 ~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 318 LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHH
Confidence 34589999999999999988655555 46778999999999999443
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=172.24 Aligned_cols=319 Identities=17% Similarity=0.082 Sum_probs=192.9
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC-CC-------ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH-hcCCc
Q 017633 7 LFPSYLQVLAALGETMKKGTSFG-AP-------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-FTGRE 76 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~-~~-------~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~-~~~~~ 76 (368)
.+..++++++++.+++.....+. .. .+...++++.++++++ +.+++++++|||+++..+++.+.. .++++
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~ 87 (379)
T TIGR03402 8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKR 87 (379)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCC
Confidence 34567899999998876421111 11 2346678899999998 678999999999999999976532 23455
Q ss_pred eEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 77 RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
.|++.+..|+......... .|..+...+... .+.. |++++++.++ ++++++++...++++|
T Consensus 88 ~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g~~-------------~~~~l~~~i~---~~~~lv~i~~~~n~tG 150 (379)
T TIGR03402 88 HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE-EGRL-------------DLEELRAAIT---DDTALVSVMWANNETG 150 (379)
T ss_pred eEEEcccccHHHHHHHHHHHHcCCEEEEEccCC-CCcC-------------CHHHHHHhcC---CCcEEEEEEcccCCee
Confidence 6666565555432222222 233332221111 1111 7999999987 4677887777777889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHH-HHhcC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIM-EMVAP 231 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~-~~~~~ 231 (368)
.+.+ +++|.++|++||+++++|++|+ .|.. ..+.....+|++++| | +.|+.++|+++++++.. .....
T Consensus 151 ~~~~----~~~I~~l~~~~g~~vivD~~~~---~g~~-~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~~p~~~ 221 (379)
T TIGR03402 151 TIFP----IEEIGEIAKERGALFHTDAVQA---VGKI-PIDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTRFRPLLR 221 (379)
T ss_pred eccc----HHHHHHHHHHcCCEEEEECccc---cccc-ccCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCCCCCccc
Confidence 9888 8999999999999999999996 2221 122223456777766 9 55445688887765431 10000
Q ss_pred CCC-ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEEee---c-cceEEEEeecC
Q 017633 232 AGP-MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGY---I-SGMFGFFFTEG 305 (368)
Q Consensus 232 ~~~-~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~ 305 (368)
.+. .......+.+..+..+..++++.+.+ +.+...++.+.+++.+.+.+.+ .+....... . ...+.+.+.
T Consensus 222 g~~~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 297 (379)
T TIGR03402 222 GGHQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFE-- 297 (379)
T ss_pred CCccCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEec--
Confidence 000 00011224566777777778877643 3444455555555555554432 321111110 1 122222221
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------Cccc--cccCCCHHHHHHHHHH
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGF--TSLAHSSDDIQHTITA 360 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~--~~~~~~~~~i~~~~~~ 360 (368)
.....++...|.++||.++.+.. ..+| +...++++|++++++.
T Consensus 298 ------------~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~ 365 (379)
T TIGR03402 298 ------------YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEV 365 (379)
T ss_pred ------------CCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHH
Confidence 11236788888889999987531 1244 4677899999999999
Q ss_pred HHHHHhh
Q 017633 361 AEKVLRQ 367 (368)
Q Consensus 361 l~~~l~~ 367 (368)
|++++++
T Consensus 366 l~~~~~~ 372 (379)
T TIGR03402 366 LPPIIAR 372 (379)
T ss_pred HHHHHHH
Confidence 9998754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=170.61 Aligned_cols=318 Identities=17% Similarity=0.153 Sum_probs=198.5
Q ss_pred CCCcHHHHHHHHHHHHcCCCC--C---C----CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHH--HhcC
Q 017633 8 FPSYLQVLAALGETMKKGTSF--G---A----PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR--AFTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~--~---~----~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~--~~~~ 74 (368)
|..++.+++++.+.+...... . + ..+..+++++.++++++ . .++|++++|+|+++..+++... ...+
T Consensus 42 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~ 121 (424)
T PLN02855 42 SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKP 121 (424)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCC
Confidence 446678999998877652111 1 1 11235688899999997 3 4799999999999999886421 2346
Q ss_pred CceEEEEcCCCCCCchhhhh---hcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
++.|++.+..|++....... ..|..+..........+ |++++++.++ ++++++++..+++
T Consensus 122 gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~--------------~~~~l~~~i~---~~t~lv~i~~~~n 184 (424)
T PLN02855 122 GDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVL--------------DVEQLKELLS---EKTKLVATHHVSN 184 (424)
T ss_pred cCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCc--------------CHHHHHHHhc---cCceEEEEeCccc
Confidence 77888887767654333222 22333322211111111 7899999997 4688888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcch--hhhhhhccCCccceeeeehHHHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
++|.+.+ +++|.++|+++|+++++|++|. .|. ......++ +|+ .+++|.++ +.++|++++++++++.
T Consensus 185 ~tG~~~~----~~~I~~l~~~~g~~vivD~a~~---~g~~~~~~~~~~--~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~ 254 (424)
T PLN02855 185 VLGSILP----VEDIVHWAHAVGAKVLVDACQS---VPHMPVDVQTLG--ADFLVASSHKMCG-PTGIGFLWGKSDLLES 254 (424)
T ss_pred cccccCC----HHHHHHHHHHcCCEEEEEhhhh---cCCcCCCchhcC--CCEEEeecccccC-CCccEEEEEchhhhhc
Confidence 8999998 9999999999999999999995 221 12223333 455 47789554 3469999999888776
Q ss_pred hcCC--CCc---------------c-ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-Cce
Q 017633 229 VAPA--GPM---------------Y-QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 289 (368)
Q Consensus 229 ~~~~--~~~---------------~-~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~ 289 (368)
+... +.. . .....+.+..+.+++.++++.+.+.++ +.+.++...+++.+.+.+.+.+ ...
T Consensus 255 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~L~~~~g~~i 333 (424)
T PLN02855 255 MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGM-DRIHEYEVELGTYLYEKLSSVPGVRI 333 (424)
T ss_pred CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 6421 000 0 001113455666777788887754332 3444444444444444433332 111
Q ss_pred EE------eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC------------Cccc--cccC
Q 017633 290 CG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF------------EAGF--TSLA 348 (368)
Q Consensus 290 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~------------~~~~--~~~~ 348 (368)
.. ...++++.+.+. .....++.+.|.++ ||.++.+.. ..+| +..+
T Consensus 334 ~~~~~~~~~~r~~~v~~~~~--------------~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~y 399 (424)
T PLN02855 334 YGPKPSEGVGRAALCAFNVE--------------GIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFY 399 (424)
T ss_pred eCCCcccccCcccEEEEEEC--------------CcCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccC
Confidence 10 112345555542 12246788999887 999986531 2234 4677
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 017633 349 HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 349 ~~~~~i~~~~~~l~~~l~~ 367 (368)
++++|++++++.|++++..
T Consensus 400 nt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 400 NTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998754
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=160.28 Aligned_cols=319 Identities=18% Similarity=0.162 Sum_probs=213.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCC--CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
-+|+|+++|.+..-. +.. ..+...++.+.+...++ . .+.++++.|||.+++.++..+ ..++|+|++...+.
T Consensus 16 v~~~V~~am~~~~~~---h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl--~~pgdkVLv~~nG~ 90 (383)
T COG0075 16 VPPRVLLAMARPMVG---HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL--VEPGDKVLVVVNGK 90 (383)
T ss_pred CCHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc--cCCCCeEEEEeCCh
Confidence 355677666554322 221 23567788888888887 3 478888899999999999655 35788999998888
Q ss_pred CCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 86 HGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
+|...+-+... |..+.....+....+ |+++++++++.+ +..+++.+.++-..+|...| ++
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~wg~~v--------------~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp----l~ 151 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVEWGEAV--------------DPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP----LK 151 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCCCCCCC--------------CHHHHHHHHhcC-CCccEEEEEeccCcccccCc----HH
Confidence 88776555443 343333222222222 899999999965 45666667677777898898 99
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc--c------
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM--Y------ 236 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~--~------ 236 (368)
+|+++|++||.++|+|.+-+ ..|..+..+.|+++.-+..-.|++++..++|.+..+++.++.+...... +
T Consensus 152 ~I~~~~k~~g~l~iVDaVsS--~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~ 229 (383)
T COG0075 152 EIAKAAKEHGALLIVDAVSS--LGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKW 229 (383)
T ss_pred HHHHHHHHcCCEEEEEeccc--CCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHH
Confidence 99999999999999997765 2345677888998665566779999766789999999988888754321 1
Q ss_pred -------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeccceEEEEeecCC
Q 017633 237 -------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTEGP 306 (368)
Q Consensus 237 -------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 306 (368)
....++++.....+..++++.+.+++ .+...++++.+.+.+++.....++.... ........+..
T Consensus 230 ~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EG-le~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~---- 304 (383)
T COG0075 230 LKYMEKKGSTPYTPPVNLIYALREALDLILEEG-LEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKV---- 304 (383)
T ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEEC----
Confidence 13455667778888889999888766 3444444444445554444444433222 11112223322
Q ss_pred CcccchhcccccHHHHHHHHHHHHc-CeeecCCCCC----cccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~----~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
|.+.+..+....++++ |+.+.++..+ .+|+ .-..+.+++..++.+|+.++.++
T Consensus 305 ---------P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 305 ---------PEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred ---------CCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 3333333344456555 9999887433 2444 34679999999999999998653
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=157.53 Aligned_cols=320 Identities=21% Similarity=0.202 Sum_probs=198.2
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 9 PSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
...|+++++|.++-.....-|..++.-.++.+++++.++. ..++|++|||+|+.++|.... .++..||+-. .-|-.
T Consensus 11 g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal~~~~--~~~~~vi~~~-~aHi~ 86 (342)
T COG2008 11 GPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGK-EAALFVPSGTQANQLALAAHC--QPGESVICHE-TAHIY 86 (342)
T ss_pred CCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHHHHhc--CCCCeEEEec-cccce
Confidence 3789999999886533333344678899999999999977 899999999999999997764 3555666643 34443
Q ss_pred ch--hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 89 AD--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 89 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.. .+....+........+...+.+ ++++++..++. +...+..++.+...+.+|.+++ .+++
T Consensus 87 ~~E~Ga~~~~~~~~~~~~~~g~~Gkl-------------t~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~-l~el 152 (342)
T COG2008 87 TDECGAPEFFGGGQKLPIVPGADGKL-------------TPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYP-LDEL 152 (342)
T ss_pred ecccCcHHHHcCCceeccCCCCCCCc-------------CHHHHHHhhcCCCcccCCCceEEEeeccCCCceecC-HHHH
Confidence 32 3333333322222233344444 89999998884 2234555555555556776555 4559
Q ss_pred HHHHHHHHHhCCEEEEehhhhc--h-hcccCccccccCCCcchhhhhhhccCCccceee-eehHHHHHHhcCCCCccccc
Q 017633 164 NAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~--~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v-~~~~~~~~~~~~~~~~~~~~ 239 (368)
++|.++|++||+.|++|-+-.. + ..+ .....|....|.++|+=+.++|+++|.+ ++++++++.++..+ ...++
T Consensus 153 ~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~r-K~~Gg 229 (342)
T COG2008 153 EAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWR-KRAGG 229 (342)
T ss_pred HHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHH-HHhcc
Confidence 9999999999999999955521 1 112 2333444445666655444456788887 66888877665321 12334
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH-hcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK-KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.++-..+..+..+..++ +++..........+.++|.+.+. ..+.....+...+++.+.+... .
T Consensus 230 l~~k~r~laA~~~~~l~----~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~------------~ 293 (342)
T COG2008 230 LMRKARFLAAQGLYALE----DDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES------------A 293 (342)
T ss_pred cHhhhhHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChH------------H
Confidence 44444455555555554 44333333333334444444443 3355444556677777766321 1
Q ss_pred HHHHHHHHHHHHcCeeecCCC-CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+......++...|+.+.+.+ .-.+..+..+++++++++++.+++++
T Consensus 294 i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 IEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred HHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 233455566666778877765 22233478899999999999998865
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=166.64 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=177.6
Q ss_pred CcHHHHHHHHHHHHcC-------CCCCCCChhHHH----HHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKKG-------TSFGAPCLLENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~----l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
-+|+|++++.+.+... ..++...+.... .++.++++++ +...++++ ||++|+..++... ..++|.
T Consensus 31 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~-sgt~a~~~~l~~l--~~~Gd~ 107 (402)
T cd00378 31 TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFAL--LEPGDT 107 (402)
T ss_pred CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecC-CcHHHHHHHHHHh--cCCCCE
Confidence 4788999988765321 111112333333 3445667777 33444444 6899999988766 356789
Q ss_pred EEEEcCCCCCCchhh----hhhcCCCccccCCCCC--CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 78 IIKFEGCYHGHADPF----LVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 78 vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
|++.++.|.++.... +...|..+....++.. .+.. |++++++.+.+. +++++++.+..
T Consensus 108 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i-------------d~~~l~~~i~~~--~~~~v~~~~~~- 171 (402)
T cd00378 108 IMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLI-------------DYDALEKMALEF--KPKLIVAGASA- 171 (402)
T ss_pred EEEecCccCccccccccccccccceeEEEecCCcCcccCCc-------------CHHHHHHHHHhC--CCCEEEecCcc-
Confidence 999988886653321 1222221111111111 1111 899999998642 45666554332
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccC-ccccccCCCcchhhhhhhccCCccceeeeehH-HHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRR-DIME 227 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~-~~~~ 227 (368)
.|...+ +++|+++|++||+++|+|++| .++ ..|.. .... +.+.-+.++||++ +|+|+||+++++ ++++
T Consensus 172 -~~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l-~G~~gg~i~~~~~~~~~ 243 (402)
T cd00378 172 -YPRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTL-RGPRGGLILTRKGELAK 243 (402)
T ss_pred -cCCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCC-CCCCceEEEeccHHHHH
Confidence 234445 999999999999999999997 555 33321 1111 2222245889999 678999998876 7877
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeccceEEEEee
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFT 303 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 303 (368)
.+.........+ +.......++..++..... +++.+++.++++++++.|.+ .++... .+..++++|+.+.
T Consensus 244 ~l~~~~~~~~~~--~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~v~v~~~ 317 (402)
T cd00378 244 KINSAVFPGLQG--GPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE----RGFKVVSGGTDNHLVLVDLR 317 (402)
T ss_pred HHHHHhCccccC--CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----CCCeEeecCCCCeEEEEeCC
Confidence 775321111111 1122333333334433322 23445566666666666655 343222 1234667777763
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC----------Cccccc------cCCCHHHHHHHHHHHHHHHh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS------LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----------~~~~~~------~~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ......+.+.|.++||.+.+... ..+|+. ..++++|++++++.|++++.
T Consensus 318 ~~------------~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 318 PK------------GITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred cc------------CCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 21 11235667778888999975321 123332 13478999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=164.47 Aligned_cols=312 Identities=16% Similarity=0.146 Sum_probs=187.7
Q ss_pred CcHHHHHHHHHHHHcCC---C-CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh----cCCceEEE
Q 017633 10 SYLQVLAALGETMKKGT---S-FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----TGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---~-~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~----~~~~~vi~ 80 (368)
..|.+++++.+++.... . +....+...++++.++++++ +.+.+++++||++++..++..+... .+++.|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 44566777777654421 1 11223556899999999998 5667888999999998888655431 23467887
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++++.. .......|.++....... .+. .|++++++.++.+ ..+++++.+ ++++|.+.+
T Consensus 112 ~~~~h~~~-~~~~~~~G~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~--~~~vv~~~~-~~~tG~~~~-- 171 (373)
T TIGR03812 112 PESAHFSF-EKAAEMLGLELRYAPLDE-DYT-------------VDVKDVEDLIDDN--TIGIVGIAG-TTELGQIDD-- 171 (373)
T ss_pred CCcchHHH-HHHHHHcCCeEEEEeeCC-CCC-------------cCHHHHHHHHhhC--cEEEEEECC-CCCCCccCC--
Confidence 77655542 233333343332211111 110 1799999998742 334555554 456788777
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hc-c----cCccccccCCCcchhhh--hhhccCCccceeee-ehHHHHHHhcC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RL-A----YGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYG-GRRDIMEMVAP 231 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~-g----~~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~-~~~~~~~~~~~ 231 (368)
+++|.++|+++|+++|+|++|.++ .. . .....+..-...|.+++ .|...++.|+|+++ .++++++.+..
T Consensus 172 --~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~ 249 (373)
T TIGR03812 172 --IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSV 249 (373)
T ss_pred --HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcc
Confidence 999999999999999999999654 11 0 00011110012344443 38433667888664 57777776642
Q ss_pred CCCccccc-----cCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 232 AGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 232 ~~~~~~~~-----t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
..++.... ..+.+.....++.++++.+.+++ ..++..+++++++++|+++ +......+..+++.+.+
T Consensus 250 ~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~- 324 (373)
T TIGR03812 250 DAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIVAFEV- 324 (373)
T ss_pred cCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEEEEEe-
Confidence 22211111 11344566777778888765433 4566666666666666653 33222223334444432
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-CCcccc--ccCCCHHHHHHHHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT--SLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~~~~~--~~~~~~~~i~~~~~~l~~ 363 (368)
++ ..++.+.|.++||.++... ...+|+ +..++++|++++++.|++
T Consensus 325 ------------~~---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 325 ------------DD---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ------------CC---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 11 3578999999999998763 334554 556899999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=161.92 Aligned_cols=314 Identities=13% Similarity=0.072 Sum_probs=186.2
Q ss_pred CceeccCC--CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc---
Q 017633 2 PQLIILFP--SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE--- 76 (368)
Q Consensus 2 ~~~~~~g~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~--- 76 (368)
+...++|. .++++++++.++.++ +....+...+++++++++++ .+++++++|+|+|+..+++.+. .++|
T Consensus 15 g~~t~~g~s~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~a~~~g-~~~~~~~~g~t~al~~al~al~--~~Gd~~~ 88 (363)
T TIGR01437 15 GKMTILGVSTVSDEVADAQKRGAQN---YFEIKELVNKTGEYIANLLG-VEDAVIVSSASAGIAQSVAAVI--TRGNRYL 88 (363)
T ss_pred cEeecCCCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhhC-CCeEEEEcCHHHHHHHHHHHHh--cCCCcch
Confidence 34456676 588999999998765 33456778888999998885 3478999999999999997763 3444
Q ss_pred ------------eEEEEcCCCCCCc---hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCe
Q 017633 77 ------------RIIKFEGCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 141 (368)
Q Consensus 77 ------------~vi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~ 141 (368)
.||+..+.|..+. ...+...|........ .+. .|+++++++++ +++
T Consensus 89 ~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~---~~~-------------~d~~~le~ai~---~~t 149 (363)
T TIGR01437 89 VENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY---ANE-------------CSAEQLEAAIT---EKT 149 (363)
T ss_pred hhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC---CCC-------------CCHHHHHHhcC---hhc
Confidence 7777665444321 2333333432221111 111 18999999998 456
Q ss_pred EEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCcccee
Q 017633 142 AAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGA 218 (368)
Q Consensus 142 ~~~~-~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~ 218 (368)
++++ +++.++.+|...+ +++|+++|++||+++|+|++|..-. .....++ .|++ |.+|+++ |++.|+
T Consensus 150 ~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~~~~----~~~~~~g--~D~~~~S~~K~l~-gp~~G~ 218 (363)
T TIGR01437 150 AAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAEEDL----QKYYRLG--ADLVIYSGAKAIE-GPTSGL 218 (363)
T ss_pred eEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCCCch----HHHHHcC--CCEEEEeCCcccC-CCceEE
Confidence 6555 3443445676777 9999999999999999999996100 0111233 3554 5669885 567999
Q ss_pred eeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE--eec
Q 017633 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG--GYI 294 (368)
Q Consensus 219 v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~ 294 (368)
++.++++++.+...... ....+.......++..++++.+.+ .+..+...+++++++++|.++. ++.... ...
T Consensus 219 l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~---g~~~~~~~~~~ 294 (363)
T TIGR01437 219 VLGKKKYIEWVKLQSKG-IGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLK---GVSASIVQDEA 294 (363)
T ss_pred EEEcHHHHHHHHhccCC-CcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCC---CeEEEEecCCC
Confidence 88888777765321100 001111122334444556655543 3344555556667777776641 211111 110
Q ss_pred cc---eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcC--eeecCC--CCCcccc-ccCCCHHHHHHHHHHHHHHH
Q 017633 295 SG---MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPS--QFEAGFT-SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 295 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--i~~~~~--~~~~~~~-~~~~~~~~i~~~~~~l~~~l 365 (368)
+. ...+.+... ....+..++.+.|.++| |..++. ....+++ ....+++|++.++++|++++
T Consensus 295 ~~~~~~~~v~~~~~----------~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 295 GRDIARAEIRFDES----------ELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred CCcCceEEEEEecc----------CCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 11 111222110 01234588999998877 777642 1222333 23467999999999998764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=165.24 Aligned_cols=309 Identities=13% Similarity=0.056 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
++-.+++.+.+..+...+ ..+...++.+++++.++ .+++++++||++|+..++..+ ...++|.||+.+.+|.+....
T Consensus 11 ~~e~~a~~~~~~~~~~~~-~g~~~~~~e~~la~~~g-~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~~~~ 87 (376)
T TIGR02379 11 GQELEYIAEAISEGKLSG-DGPFSRRCETWLENRTG-TKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTANA 87 (376)
T ss_pred HHHHHHHHHHHHcCCccC-CcHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHHH
Confidence 456778888776643332 34567888888888874 468999999999999988654 235788999988888776444
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
... .|..++........... |+++++++++ +++++++ |++ .+|...+ +++|.++|+
T Consensus 88 ~~~-~G~~~v~vd~d~~~~~~-------------d~~~le~~i~---~~tk~Ii--p~~-~~G~~~d----~~~I~~la~ 143 (376)
T TIGR02379 88 FVL-RGAKIVFVDIRPDTMNI-------------DETLIESAIT---HRTKAIV--PVH-YAGVACD----MDTIMALAN 143 (376)
T ss_pred HHH-cCCEEEEEecCCCcCCC-------------CHHHHHHhcC---cCceEEE--EeC-CCCCccC----HHHHHHHHH
Confidence 433 34433322222111111 7899999887 3677765 333 3566666 999999999
Q ss_pred HhCCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccCCccceeeeeh-HHHHHHhcC---CCCc--------
Q 017633 172 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM-------- 235 (368)
Q Consensus 172 ~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~G~~iG~v~~~-~~~~~~~~~---~~~~-------- 235 (368)
+||+++|+|++|+.. ..+.....+..-|+.+|| |.+++|.+.|+++.+ +++.+.++. .+..
T Consensus 144 ~~~i~vIeDaa~~~g---~~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (376)
T TIGR02379 144 KHQLFVIEDAAQGVM---STYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGE 220 (376)
T ss_pred HCCCEEEEECccccC---CccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccC
Confidence 999999999999632 111112234334677777 999877788998664 666665542 1100
Q ss_pred -------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH----hcC-CceEEeeccceEEEEee
Q 017633 236 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAICGGYISGMFGFFFT 303 (368)
Q Consensus 236 -------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~-~~~~~~~~~~~~~~~~~ 303 (368)
..+..+..+.+.++.+++.++.+ ++..++.+++.+++.+.|.+... ..+ .+........++++.+.
T Consensus 221 ~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (376)
T TIGR02379 221 VDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLK 298 (376)
T ss_pred CCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEEC
Confidence 02344456667777777777766 44566677777777777765421 111 01011111122233331
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc--------------------------ccc--ccCCCHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--------------------------GFT--SLAHSSDDIQ 355 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--------------------------~~~--~~~~~~~~i~ 355 (368)
...+..++.+.|.++||..+....+. +++ ...++++|++
T Consensus 299 -------------~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~ 365 (376)
T TIGR02379 299 -------------DEDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQA 365 (376)
T ss_pred -------------CcCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHH
Confidence 11235789999999999877432110 122 2457999999
Q ss_pred HHHHHHHHHH
Q 017633 356 HTITAAEKVL 365 (368)
Q Consensus 356 ~~~~~l~~~l 365 (368)
+.++.|++++
T Consensus 366 ~i~~~i~~~~ 375 (376)
T TIGR02379 366 RVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=163.56 Aligned_cols=331 Identities=13% Similarity=0.025 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh
Q 017633 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 92 (368)
Q Consensus 13 ~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~ 92 (368)
.+.++..+++..+...|..+....+|++.++++++. +.+++++||++|+..++.+. ..++|.| +.++.|..+. ..
T Consensus 33 ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g~-~~vv~t~~Gt~Al~la~~al--~~pGD~V-~~~~~f~~~~-~~ 107 (431)
T cd00617 33 AMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFGF-KHIIPTHQGRGAENILFSIL--LKPGRTV-PSNMHFDTTR-GH 107 (431)
T ss_pred HHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHCC-CeEEEcCCHHHHHHHHHHHh--CCCCCEE-ccCCcccchH-HH
Confidence 566666676665544455677789999999999953 57999999999999998766 3456655 4454554443 34
Q ss_pred hhhcCC-CccccCCCCCCCCCCCCCCcccccCC---CCHHHHHHHHHcC-CCCeEEEEEcccCCC-CCcccCCHHHHHHH
Q 017633 93 LVKAGS-GVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENN-KGEIAAIILEPVVGN-SGFIAPKPDFLNAI 166 (368)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~~~~~-~~~~~~~~~~~~~~~-~g~~~~~~~~l~~i 166 (368)
....|. ++..+..+..+ . ....|+ -|+++|++++++. .+++++++++..+|. +|... +.+.+++|
T Consensus 108 i~~~Ga~pv~v~i~~~~~-~-------~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~-s~~~l~~i 178 (431)
T cd00617 108 IEANGAVPVDLVIDEAHD-A-------QELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPV-SMANLREV 178 (431)
T ss_pred HHhCCCEeEEEecccccc-c-------ccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccC-CHHHHHHH
Confidence 444443 33221111110 0 000011 1899999999853 234676666544444 46544 45559999
Q ss_pred HHHHHHhCCEEEEehhhhch---hc----ccCccccccCCCcchhhhhhhcc-CCcc------ceeeeehH-HHHHHhcC
Q 017633 167 RRITKENGALLIFDEVMTGF---RL----AYGGAQEYFGVTPDLTTLGKIIG-GGLP------VGAYGGRR-DIMEMVAP 231 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~---~~----g~~~~~~~~~~~~di~s~sK~~~-~G~~------iG~v~~~~-~~~~~~~~ 231 (368)
.++|++||++||+|+++... .. +......-..+..++.++||.+. +|++ .||+++++ ++++.++.
T Consensus 179 ~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~ 258 (431)
T cd00617 179 RELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQ 258 (431)
T ss_pred HHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHH
Confidence 99999999999999997421 10 00000000111224567888887 6676 55788875 68887764
Q ss_pred CCCccc-cccCCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 232 AGPMYQ-AGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 232 ~~~~~~-~~t~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
...... ..++++ +....+++..+++...+.++.++..++++++.+.|.+ .|++...+..++.+++++..-..
T Consensus 259 ~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~----~G~~v~~P~Ggh~v~~d~~~~~~-- 332 (431)
T cd00617 259 RVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDE----AGVPIVEPAGGHAVFIDAREFLP-- 332 (431)
T ss_pred hccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH----CCCCccCCCcceEEEEEhHHhcC--
Confidence 221111 112222 3333333333554321223344444444556666655 45655556667777777653110
Q ss_pred cchhcccccHHHHHHHHHHHH-cCeeecCCCC------C-----------ccc---cccCCCHHHHHHHHHHHHHHHh
Q 017633 310 FEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------E-----------AGF---TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------~-----------~~~---~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...++.-.+.+++.+|.+ .||.+...|. + .+| ++..-|.++++++.+.|..+.+
T Consensus 333 ---~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 333 ---HIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred ---CCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 000111236788866664 5788643211 0 122 2345688999999999998874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-19 Score=162.57 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHHcCC---CC-CCC-----ChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKKGT---SF-GAP-----CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---~~-~~~-----~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.++.+++++.+.+.... .+ .++ .+...++++.++++++ . .+++++++|+++++..++... ..+++.|
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~v 89 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL--LKEGDHV 89 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc--cCCCCEE
Confidence 56789999988887632 12 122 2556789999999987 3 458999999999999988653 3467888
Q ss_pred EEEcCCCCCCchhhh---hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 79 IKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
++....|+....... ...|..+....... .+. .|++++++.++ ++++++++..+++++|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~~~---~~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 90 ITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EGL-------------ISPERIKRAIK---TNTKLIVVSHASNVTGT 152 (376)
T ss_pred EECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCC-------------cCHHHHHHhcC---CCCeEEEEECCCCCccc
Confidence 887766554332211 11133322211111 111 17999999886 36777877777778898
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchh--hhhhhccCCccceeeeehHHH-HHHhcC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAP 231 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~-~~~~~~ 231 (368)
+.+ +++|.++|+++|+++|+|++|+ .|. ......++ +|++ +..|+++++-.+|.++++++. ++.+..
T Consensus 153 ~~~----~~~i~~l~~~~~~~livD~a~~---~g~~~~~~~~~~--~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 153 ILP----IEEIGELAQENGIFFILDAAQT---AGVIPIDMTELA--IDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred cCC----HHHHHHHHHHcCCEEEEEhhhc---cCccCCCchhcC--CCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 888 9999999999999999999995 221 12223333 4654 556999854567777665442 222221
Q ss_pred CCCcc-------------ccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEE----
Q 017633 232 AGPMY-------------QAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICG---- 291 (368)
Q Consensus 232 ~~~~~-------------~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---- 291 (368)
.+... .....+.+.....+..++++.+.+.+ ..++..++.+++++.+.+. .+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~~~~ 300 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI---NKVKIYGPADP 300 (376)
T ss_pred CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCc
Confidence 10000 00112456667777777888876544 3445555555555555442 1111111
Q ss_pred eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC--------------CCccc--cccCCCHHHH
Q 017633 292 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------------FEAGF--TSLAHSSDDI 354 (368)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~--------------~~~~~--~~~~~~~~~i 354 (368)
....+++++.+. ..+..++.+.|.++ ||.++.+. ...+| +...++++|+
T Consensus 301 ~~~~~~v~~~~~--------------~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv 366 (376)
T TIGR01977 301 ANRVGVVSFTVE--------------GIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEI 366 (376)
T ss_pred cccCCeEEEEEC--------------CCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHH
Confidence 112445555542 12346789999987 99987652 12344 3577899999
Q ss_pred HHHHHHHHH
Q 017633 355 QHTITAAEK 363 (368)
Q Consensus 355 ~~~~~~l~~ 363 (368)
++++++|++
T Consensus 367 ~~~~~~l~~ 375 (376)
T TIGR01977 367 EKLLEALSE 375 (376)
T ss_pred HHHHHHHhh
Confidence 999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-19 Score=163.24 Aligned_cols=323 Identities=16% Similarity=0.065 Sum_probs=186.9
Q ss_pred eccCCCcHHHHHHHHHHHHcCC-----CCCC----CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 5 IILFPSYLQVLAALGETMKKGT-----SFGA----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~-----~~~~----~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.+|..++.+.+++.+++.... .+.. ......++ +.+ +.++ .++++++++|+|+++..++..+....+
T Consensus 34 ~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~ 111 (406)
T TIGR01814 34 NSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTP 111 (406)
T ss_pred CCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcC
Confidence 3466677888898887765411 1111 11222333 334 6666 678999999999999998865422111
Q ss_pred Cc-eEEEEcCCCCCCchhhh---hhcCCCcc--ccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEc
Q 017633 75 RE-RIIKFEGCYHGHADPFL---VKAGSGVA--TLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 147 (368)
Q Consensus 75 ~~-~vi~~~~~~~~~~~~~~---~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~ 147 (368)
++ .|++....|........ ...|..+. ....+ ...+.. |++++++.++...+++++++++
T Consensus 112 ~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~-------------~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 112 KRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETL-------------RLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred CccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCcc-------------CHHHHHHHHHhcCCCeEEEEEe
Confidence 23 44544444444322222 11122220 00111 111111 6888888886544679999999
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHH
Q 017633 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 148 ~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
++++++|.+.+ +++|+++|++||+++++|++|+ .|. .+....++++..+.+..|++.+|.+ |.+++.++..
T Consensus 179 ~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~---~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~ 250 (406)
T TIGR01814 179 GVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA---VGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHA 250 (406)
T ss_pred ccccccceecC----HHHHHHHHHHcCCEEEEEcccc---cCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhh
Confidence 99999999999 9999999999999999999996 332 2334445554444556699976555 5444433322
Q ss_pred HHhcCC--CCccc--------c----------ccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHH
Q 017633 227 EMVAPA--GPMYQ--------A----------GTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGK 283 (368)
Q Consensus 227 ~~~~~~--~~~~~--------~----------~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~ 283 (368)
..+... +.... . -..++|..+++++.++++.+.+.+ ..++.....+++++.+++...
T Consensus 251 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~ 330 (406)
T TIGR01814 251 HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCG 330 (406)
T ss_pred hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 222210 00000 0 012356678888888999886543 334444455555554444210
Q ss_pred -hcCCceEE----eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc---ccCCCHHHHH
Q 017633 284 -KAGHAICG----GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---SLAHSSDDIQ 355 (368)
Q Consensus 284 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~---~~~~~~~~i~ 355 (368)
..++.... ...++++.+.+. ....++.+.|.++||.+.......+|+ +++++++|++
T Consensus 331 ~~~~~~i~~~~~~~~r~~~v~~~~~---------------~~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did 395 (406)
T TIGR01814 331 GPPVLTIITPRDHAQRGCQLSLTHP---------------VPGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVY 395 (406)
T ss_pred CCCceEEeCCCChhhcCCeEEEEec---------------CCHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHH
Confidence 00111110 112334444431 124678999999999987654445554 3578999999
Q ss_pred HHHHHHHHHH
Q 017633 356 HTITAAEKVL 365 (368)
Q Consensus 356 ~~~~~l~~~l 365 (368)
+++++|++++
T Consensus 396 ~l~~~l~~~~ 405 (406)
T TIGR01814 396 DAVNVLEEIL 405 (406)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=163.60 Aligned_cols=316 Identities=15% Similarity=0.081 Sum_probs=186.2
Q ss_pred CCcHHHHHHHHHHHHcCCC-----CCCCChhHHHHHHHHHhhC---C--CCCeEEEeCChHHHHHHHHHHHHH----hcC
Q 017633 9 PSYLQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAV---P--SIEMVRFVNSGTEACMGVLRLARA----FTG 74 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~---~--~~~~v~~~~~gt~a~~~al~~~~~----~~~ 74 (368)
..++.|++++.+.+..... +.++......+++.++++. + +++++++++|+++++..+++.... -++
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~ 89 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGG 89 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCC
Confidence 3567899999888865211 1122334455666655544 2 368999999999999998875421 123
Q ss_pred CceEEEEcCCCCCCchhhh--hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 75 RERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
++.|++....++....... ...|..+...+.... +.. |+++++++++ ++++++++...+++
T Consensus 90 ~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~-g~~-------------d~~~l~~~i~---~~t~lv~~~~~~n~ 152 (382)
T TIGR03403 90 KNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ-GTI-------------TAEQVREAIT---EKTALVSVMWANNE 152 (382)
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC-CCC-------------CHHHHHHhcc---cCCeEEEEEcccCC
Confidence 4567776544443322221 122332222211111 111 7899999887 35677877777778
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHH--H
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIM--E 227 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~--~ 227 (368)
+|.+.+ +++|.++|++||+++++|++|. .|. ......+ .+|++++| |.++ +.++|++++++... .
T Consensus 153 tG~~~~----~~~I~~la~~~g~~~ivD~a~~---~g~~~~~~~~~--~~D~~~~s~~K~~g-p~G~g~l~vr~~~~~~p 222 (382)
T TIGR03403 153 TGMIFP----IKEIGEICKERGVLFHTDAVQA---IGKIPVDVQKA--GVDFLSFSAHKFHG-PKGVGGLYIRKGVELTP 222 (382)
T ss_pred CccccC----HHHHHHHHHHcCCEEEEechhh---cCCCccCcccc--CCCEEEEcchhhCC-CCceEEEEECCCCCCCC
Confidence 898888 9999999999999999999985 221 1222223 35666554 9755 23467776655421 1
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec----cceEEEEee
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI----SGMFGFFFT 303 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 303 (368)
.+............+.|..++.++.++++...+ ..+...++.+.+++++.+.+.+.+......+. .+++.+.+.
T Consensus 223 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T TIGR03403 223 LFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK 300 (382)
T ss_pred cccCCCCCCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC
Confidence 111000011112345677788788888876643 23444455555555555544433322222111 224344431
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------Cccc--cccCCCHHHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGF--TSLAHSSDDIQHTI 358 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~--~~~~~~~~~i~~~~ 358 (368)
.....++...|.++||.++.|.. ..+| +...++++|+++++
T Consensus 301 --------------~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~ 366 (382)
T TIGR03403 301 --------------GVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTI 366 (382)
T ss_pred --------------CCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHH
Confidence 12246777778899999996421 1234 35778999999999
Q ss_pred HHHHHHHhh
Q 017633 359 TAAEKVLRQ 367 (368)
Q Consensus 359 ~~l~~~l~~ 367 (368)
+.|++++++
T Consensus 367 ~~l~~~~~~ 375 (382)
T TIGR03403 367 EVFKKAVQR 375 (382)
T ss_pred HHHHHHHHH
Confidence 999988754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-19 Score=151.52 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=193.9
Q ss_pred CChhHHHHHHHHHhhCC-------CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccc
Q 017633 31 PCLLENVLAEMVISAVP-------SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 102 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-------~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 102 (368)
++....+|...+.++.+ -.+ +++.|+|.|+++...++++. +.++.|++-.-+|.....+.-.. |
T Consensus 98 ~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~--N~gd~vlie~~ty~~AL~s~~a~-g----- 169 (472)
T KOG0634|consen 98 QSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI--NRGDHVLIEEYTYPSALQSMEAL-G----- 169 (472)
T ss_pred cccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh--cCCCceEEecccchHHHHhcccc-C-----
Confidence 44555667777766543 123 89999999999999998874 56788999877776543222211 1
Q ss_pred cCCCCCCCCCCCCCCcccccCCC----CHHHHHHHHHcC------CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 017633 103 LGLPDSPGVPKGATYETLTAPFN----DVSALENLFENN------KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 172 (368)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~ 172 (368)
..++.++++ +++.|++.+... .+++.++.+-|..+|+++...+.+..++|.+||+|
T Consensus 170 --------------v~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArK 235 (472)
T KOG0634|consen 170 --------------VKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARK 235 (472)
T ss_pred --------------ceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHH
Confidence 122223222 799999998752 24578999999988855555566669999999999
Q ss_pred hCCEEEEehhhhch-hc---cc--------------------CccccccCCCcchhhhhhhccCCccceeeeehHHHHHH
Q 017633 173 NGALLIFDEVMTGF-RL---AY--------------------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 173 ~~~~li~De~~~~~-~~---g~--------------------~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
||+++|+||.|--+ .. +. +...+..|.+..+-||||-+++|+|+||+.++..+++.
T Consensus 236 yDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~r 315 (472)
T KOG0634|consen 236 YDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKR 315 (472)
T ss_pred cCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHH
Confidence 99999999999433 22 10 01111122233356899999999999999998876665
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH-------HHHHHHHhcCCceEEeeccceEEEE
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ-------GIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
+.. .....|.+++.+++...-+.++....+++.+.+.+.+..+-. .+.+-+...-.....+..|.|+|+.
T Consensus 316 il~---~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~ 392 (472)
T KOG0634|consen 316 ILD---LAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVE 392 (472)
T ss_pred Hhh---hcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEE
Confidence 542 223355566777777777777766556544444444433333 3333222221334555667788988
Q ss_pred eecCCCcccchhcccccHHH-HHHHHHHHHcCeeecCCCCCc-----------cccc-cCCCHHHHHHHHHHHHHHHhh
Q 017633 302 FTEGPVYNFEDAKKSETTKF-ARFYRGMLEEGVYFAPSQFEA-----------GFTS-LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gi~~~~~~~~~-----------~~~~-~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.-. .+. .+ ..-.+. +.+...+.++||.+.+|.... +|++ ...+.++++++++++..++.+
T Consensus 393 i~~~---~~~-~~-~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 393 IPYI---NFD-TK-KSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE 466 (472)
T ss_pred eccc---ccc-cc-cchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 8400 000 00 111223 446667778999999884332 2333 334778999999999988864
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=166.77 Aligned_cols=222 Identities=15% Similarity=0.150 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
.+++...+|++.++++++. +.+++++||++|+..++..+ ..++|.|++..+.|.++.. .+...
T Consensus 73 ~~~Pt~~~LE~~lA~l~g~-~~~l~~~sG~~Ai~~al~al--~~~GD~Vl~~~~~Y~~~~~-~~~~~------------- 135 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEGT-EAAYCTASGMSAISSVLLQL--CSSGGHVVASNTLYGGTHA-LLAHF------------- 135 (418)
T ss_pred CCChhHHHHHHHHHHHhCC-CeEEEEccHHHHHHHHHHHH--hCCCCEEEEcCCcHHHHHH-HHHHh-------------
Confidence 3577899999999999864 45678899999999999765 2467889888776654322 11110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+..+.++..++..|+++++++++. +++++++++..+|++|.+.+ +++|+++|++||++||+||+|..+..
T Consensus 136 -~~~~~G~~~~~~d~~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~~- 207 (418)
T PLN02242 136 -LPRKCNITTTFVDITDLEAVKKAVVP--GKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMVL- 207 (418)
T ss_pred -hhhccCceEEEcCCCCHHHHHHhcCc--CCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccCC-
Confidence 00112233444445589999999873 24888889888888888887 99999999999999999999964411
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccc-ceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~-iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~ 266 (368)
....++.+.-+.|+||.+++ |++ .||+++++++++.+....... ...++.++..+.+++.+.. +.+ +...++
T Consensus 208 ---~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~-~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~ 282 (418)
T PLN02242 208 ---SPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA-LMLLGPTMNPKVAFELSER-LPHLSLRMKE 282 (418)
T ss_pred ---CHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh-hhccCCCCCHHHHHHHHcC-CCcHHHHHHH
Confidence 11123443345689999984 666 588898888887776321110 0112223333444333322 211 224567
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIIDA 281 (368)
Q Consensus 267 ~~~~~~~l~~~l~~~ 281 (368)
..++++++.+.|++.
T Consensus 283 ~~~~a~~la~~L~~~ 297 (418)
T PLN02242 283 HCRRAMEYAKRMKEL 297 (418)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-19 Score=156.47 Aligned_cols=308 Identities=19% Similarity=0.161 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh
Q 017633 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 92 (368)
Q Consensus 13 ~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~ 92 (368)
+-.+++.+.+..+..- +-+...++.++++++.+ ...++.++|||.|+.++++++. ..++|.||+.+-+|.++..+.
T Consensus 16 ~e~~~v~~vl~sg~i~--~G~~v~~FE~~~ae~~G-~k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvATan~i 91 (374)
T COG0399 16 EELAAVQEVLKSGWLT--GGPFVRRFEQAFAEYLG-VKYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVATANAV 91 (374)
T ss_pred HHHHHHHHHHHcCCee--cChHHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHHHHHH
Confidence 4556666666653222 24556788888888884 4567778899999999998653 568899999998888876676
Q ss_pred hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 017633 93 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 172 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~ 172 (368)
+..+..++..+-.+..-++ |++.+|++|+ +++++|+.....+ ...+ +++|.++|++
T Consensus 92 ~~~Ga~PVFvDid~~T~ni--------------d~~~ie~aIt---~~tKAIipVhl~G---~~~d----m~~i~~la~~ 147 (374)
T COG0399 92 LLVGAKPVFVDIDPDTLNI--------------DPDLIEAAIT---PRTKAIIPVHLAG---QPCD----MDAIMALAKR 147 (374)
T ss_pred HHcCCeEEEEecCCcccCC--------------CHHHHHHHcc---cCCeEEEEehhcc---CCCC----HHHHHHHHHH
Confidence 6666666655444444443 8999999999 4689988877764 4455 9999999999
Q ss_pred hCCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccCCccceeeee-hHHHHHHhc---CCCCc---------
Q 017633 173 NGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGG-RRDIMEMVA---PAGPM--------- 235 (368)
Q Consensus 173 ~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~G~~iG~v~~-~~~~~~~~~---~~~~~--------- 235 (368)
||++||+|.+|+ .|..+.-...|-.-|+.+|| |.+++| -.|+++. ++++++.++ ..+..
T Consensus 148 ~~l~vIEDaAqa---~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~ 223 (374)
T COG0399 148 HGLPVIEDAAQA---HGATYKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLH 223 (374)
T ss_pred cCCeEEEEcchh---ccCeecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCcccccee
Confidence 999999999995 33333333444445666666 999977 5677766 466666554 22221
Q ss_pred -cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec---cceEEEEeecCCCcccc
Q 017633 236 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI---SGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 236 -~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 311 (368)
..+..+..+.+.++.++..|+.+ +++.++.+++.+.+.+.|+++.. ...+....+. ..++.+.+..
T Consensus 224 ~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i~~~~------- 293 (374)
T COG0399 224 EELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTILVDE------- 293 (374)
T ss_pred eecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEEEecC-------
Confidence 12455566778888888888766 55667777777777777766421 1111111111 1222222211
Q ss_pred hhcccccHHHHHHHHHHHHcCe----eecCCCCC------------c-----------ccc--ccCCCHHHHHHHHHHHH
Q 017633 312 DAKKSETTKFARFYRGMLEEGV----YFAPSQFE------------A-----------GFT--SLAHSSDDIQHTITAAE 362 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi----~~~~~~~~------------~-----------~~~--~~~~~~~~i~~~~~~l~ 362 (368)
.......+.+.|.++|| +..|.... . +++ ...++++|+++.++.|+
T Consensus 294 -----~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~ 368 (374)
T COG0399 294 -----EGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALK 368 (374)
T ss_pred -----CCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 12335778899999954 44442110 0 122 25679999999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
+++.+
T Consensus 369 ~~~~~ 373 (374)
T COG0399 369 EVLGS 373 (374)
T ss_pred HHhcc
Confidence 98864
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=161.23 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
++-.+++.+.+..+..++ ..+...+++++++++++ .+++++++||++|+..++..+ ...+++.|++...+|......
T Consensus 11 ~~~~~~~~~~l~~~~~~g-~~~~~~~~e~~la~~~g-~~~~v~~~sgt~al~~~l~~~-~~~~Gd~Viv~~~t~~~~~~~ 87 (375)
T PRK11706 11 GTELDYIQQAMSSGKLCG-DGGFTRRCQQWLEQRFG-SAKVLLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTANA 87 (375)
T ss_pred HHHHHHHHHHHHcCCccC-CCHHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHHh-CCCCCCEEEECCCCcHHHHHH
Confidence 344666777776643333 24566888888888874 468999999999999887654 235678999988888765443
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
. ...|..+............ |+++++++++ ++++++++.+ .+|...+ +++|.++|+
T Consensus 88 ~-~~~G~~~v~~d~d~~~~~~-------------d~~~le~~i~---~~tk~i~~~~---~~G~~~~----~~~i~~la~ 143 (375)
T PRK11706 88 F-VLRGAKIVFVDIRPDTMNI-------------DETLIEAAIT---PKTRAIVPVH---YAGVACE----MDTIMALAK 143 (375)
T ss_pred H-HHcCCEEEEEecCCCcCCc-------------CHHHHHHhcC---CCCeEEEEeC---CCCCccC----HHHHHHHHH
Confidence 3 3334433222221111111 7999999987 3567666532 3566666 999999999
Q ss_pred HhCCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccCCccceeeeehHHHHHHhcC---CCC----c-----
Q 017633 172 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRRDIMEMVAP---AGP----M----- 235 (368)
Q Consensus 172 ~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~G~~iG~v~~~~~~~~~~~~---~~~----~----- 235 (368)
+||+++|+|++|+.. ..+.....+..-|+.+|| |.+++|.+.++++.++++.+.++. .+. .
T Consensus 144 ~~~i~vIeD~a~a~g---~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 220 (375)
T PRK11706 144 KHNLFVVEDAAQGVM---STYKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQV 220 (375)
T ss_pred HcCCEEEEECccccc---cccCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCC
Confidence 999999999999633 111111123223666666 999877777777777777754431 110 0
Q ss_pred ------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH--hcCCceEE---eeccceEEEEeec
Q 017633 236 ------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK--KAGHAICG---GYISGMFGFFFTE 304 (368)
Q Consensus 236 ------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~---~~~~~~~~~~~~~ 304 (368)
..+.++..+.+.++.+++.++.+ +...++.+++.+++++.|.++.. ....+... .....++++.+.
T Consensus 221 ~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (375)
T PRK11706 221 DKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR- 297 (375)
T ss_pred CcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC-
Confidence 01233334556666666666654 33445556666666666654310 00011000 111223344332
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc--------------------------cccc--cCCCHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--------------------------GFTS--LAHSSDDIQH 356 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--------------------------~~~~--~~~~~~~i~~ 356 (368)
+..+..++.+.|.++||.++....+. +.++ ...+++|+++
T Consensus 298 ------------~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~ 365 (375)
T PRK11706 298 ------------DLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRT 365 (375)
T ss_pred ------------CcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHH
Confidence 12245789999999999875321110 1222 3468999999
Q ss_pred HHHHHHHHH
Q 017633 357 TITAAEKVL 365 (368)
Q Consensus 357 ~~~~l~~~l 365 (368)
.++.|++++
T Consensus 366 i~~~i~~~~ 374 (375)
T PRK11706 366 VIDTILEFF 374 (375)
T ss_pred HHHHHHHHh
Confidence 999999865
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-18 Score=158.88 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=176.7
Q ss_pred CcHHHHHHHHHHHHcCC--C-----CCCCChhHHHH----HHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKKGT--S-----FGAPCLLENVL----AEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~--~-----~~~~~~~~~~l----~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+|+|++++.+.+.... . +....+....+ ++.+++.++ ....+++ +||++|+..++..+ ..++|.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l--~~~gd~ 113 (416)
T PRK00011 37 VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQANAAVYFAL--LKPGDT 113 (416)
T ss_pred CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchHHHHHHHHHh--cCCCCE
Confidence 57889999877653211 1 11111223333 447788887 4444555 46899999888766 356789
Q ss_pred EEEEcCCCCCCchhh--hhhcCC--CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 78 IIKFEGCYHGHADPF--LVKAGS--GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 78 vi~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
|++.++.|.+..... ....+. .+.........+ ..|+++++++++.+ +++++++.. ++.
T Consensus 114 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~--~~k~v~~~~--~~~ 176 (416)
T PRK00011 114 ILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETG-------------LIDYDEVEKLALEH--KPKLIIAGA--SAY 176 (416)
T ss_pred EEEeccccCCccccccccccccceeeEeecCcCcccC-------------CcCHHHHHHHHHhc--CCCEEEECC--CcC
Confidence 999888776532111 111111 111111100001 11899999999742 466666642 223
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccC-ccccccCCCcchhhhhhhccCCccceeeeeh-HHHHHHh
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR-RDIMEMV 229 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~-~~~~~~~ 229 (368)
|...+ +++|.++|++||+++|+|++| .|+ ..|.. .... +.+.-+.|+||++ +|++.||++++ +++++.+
T Consensus 177 ~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l-~g~~gg~i~~~~~~~~~~l 249 (416)
T PRK00011 177 SRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTL-RGPRGGLILTNDEELAKKI 249 (416)
T ss_pred CCccC----HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCC-CCCCceEEEeCCHHHHHHH
Confidence 44455 999999999999999999998 443 22211 1111 2222245789998 56899999885 6787777
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHH-HHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecC
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTL-KRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEG 305 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l-~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 305 (368)
.........+ +.....++++..++ +.+.+ +++.+++.++++++++.|++. ++.... ....+++++.+..
T Consensus 250 ~~~~~~~~~~--~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~i~~~~- 322 (416)
T PRK00011 250 NSAVFPGIQG--GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER----GFRVVSGGTDNHLVLVDLRS- 322 (416)
T ss_pred HHHhCccccC--CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeeeecCCCCeEEEEeCcc-
Confidence 5322111111 12222333333333 32321 335566677777777777653 332111 1223566666531
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC----------ccccc------cCCCHHHHHHHHHHHHHHHh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE----------AGFTS------LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~----------~~~~~------~~~~~~~i~~~~~~l~~~l~ 366 (368)
...+..++.+.|.++||.+..+..+ .+|+. ..++++|++++++.|++++.
T Consensus 323 -----------~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 323 -----------KGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred -----------cCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 1112467888899999999843211 12331 25679999999999998864
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=167.03 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=182.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++++.. ..++++||+.|+..++... ..+++.|++..+.|.+. ...+......
T Consensus 58 ~~~pt~~~Le~~lA~l~G~~-~al~~~sG~~Ai~~~l~al--~~~Gd~Vv~~~~~y~~~-~~~~~~~~~~---------- 123 (386)
T PRK06767 58 LGNPTVKLFEERMAVLEGGE-EALAFGSGMAAISATLIGF--LKAGDHIICSNGLYGCT-YGFLEVLEEK---------- 123 (386)
T ss_pred CCCcchHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCcHHHH-HHHHHHHHhh----------
Confidence 45677899999999999754 4556668999988887555 24678888877665443 2222221110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
.+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|.++|+++|+++|+|++|+....+
T Consensus 124 -----~gi~~~~~~~~d~~~l~~~i~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~ 191 (386)
T PRK06767 124 -----FMITHSFCDMETEADIENKIR---PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSPYLQ 191 (386)
T ss_pred -----cCeEEEEeCCCCHHHHHHhhC---cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 011222233347899999887 46888888888888888888 999999999999999999999522111
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~i-G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. . ..+.+.-+.|+||.++| |.++ |+++++++.++.+........++ ..+++.+++++..++.+ ....++.
T Consensus 192 ~p--l-~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~--~~~~~~a~l~~~~L~tl--~~r~~~~ 264 (386)
T PRK06767 192 RP--L-ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG--IMAPFDAWLLLRGLKTL--AVRMDRH 264 (386)
T ss_pred Cc--h-hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC--CCCHHHHHHHHcCCCcH--HHHHHHH
Confidence 11 1 12332234578899985 6775 78888887665543110011112 33566666655555433 2345667
Q ss_pred HHHHHHHHHHHHHHHHhcCCce------------EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeee
Q 017633 268 NKITGELTQGIIDAGKKAGHAI------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 335 (368)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~ 335 (368)
.++++++.+.|++. +... ...+.++++.|++.. ...+..+|.+.|...++.+
T Consensus 265 ~~~a~~la~~L~~~----p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~------------~~~~~~~f~~~l~~~~~~~ 328 (386)
T PRK06767 265 CDNAEKIVSFLKNH----DAVEGVWYPEGELASRQMKRGGGVISFSIKG------------GKEETQAFINDLHFITIAV 328 (386)
T ss_pred HHHHHHHHHHHHcC----CCccEEECCCcHHHHHhCCCCCceEEEEEcC------------CHHHHHHHHHhCCccEEec
Confidence 77777777777653 2111 112456677887631 2234678888887777777
Q ss_pred cCCCCCcc-------------------------ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 336 APSQFEAG-------------------------FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 336 ~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+-|+.... .+++.+.-||.+.+++-|++++++
T Consensus 329 s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 329 SLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKK 385 (386)
T ss_pred CCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 66542210 123455667888999999988865
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=159.86 Aligned_cols=249 Identities=15% Similarity=0.096 Sum_probs=152.7
Q ss_pred CCcHHHHHHHHHHHHcCCCC---CC------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh--cCCc
Q 017633 9 PSYLQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TGRE 76 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~---~~------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--~~~~ 76 (368)
.-++.+++++.+++...... .. ..+..+++++.++++++ +.+++++++|+|++++.++..+... .+++
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~ 93 (402)
T TIGR02006 14 PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGN 93 (402)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCC
Confidence 35788999998887542111 11 11346677888999998 6789999999999999998655321 3566
Q ss_pred eEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 77 RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
.|++....|+......... .|..+...+... .+.. |++++++.++ ++++++++...++++|
T Consensus 94 ~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~-------------d~~~l~~~l~---~~~~lv~v~~~~n~tG 156 (402)
T TIGR02006 94 HIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS-NGLI-------------DLEELKAAIR---DDTILVSIMHVNNEIG 156 (402)
T ss_pred EEEECCCccHHHHHHHHHHHhcCCEEEEEccCC-CCcC-------------CHHHHHHhcC---CCCEEEEEECCCcCce
Confidence 7777665544332222221 233222221111 1111 7899999886 3578888888888889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcC-
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP- 231 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~- 231 (368)
.+.+ +++|.++|++||+++++|++|+ .|.. .++..+..+|++++| |.++ +..+|+++++++....+..
T Consensus 157 ~~~~----~~~I~~l~~~~g~~livD~a~a---~g~~-~~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~ 227 (402)
T TIGR02006 157 VIQD----IAAIGEICRERKVFFHVDAAQS---VGKI-PINVNELKVDLMSISGHKIYG-PKGIGALYVRRKPRVRLEAL 227 (402)
T ss_pred eccc----HHHHHHHHHHcCCEEEEEcchh---cCCc-ccCccccCCCEEEEehhhhcC-CCceEEEEEccCCCCCCCce
Confidence 8888 9999999999999999999996 2221 122223456877766 9664 4458988877653332221
Q ss_pred --CCC-ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 017633 232 --AGP-MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 232 --~~~-~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
.+. .......+.+.....+..++++.+.+ ..+...++.+.+++.+.+.+...
T Consensus 228 ~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~ 282 (402)
T TIGR02006 228 IHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE--EMAQDTAHVLALRDRLLNGIKSI 282 (402)
T ss_pred ecCCCccCCccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcC
Confidence 100 00111224456666666688887643 23444555555666665544433
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=167.00 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=152.2
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+.++...+|+++++++++. +..++++||++|+..++..+ ..+++.|++....|++.........
T Consensus 37 ~~~p~~~~le~~la~l~g~-~~a~~~~sG~~Ai~~~l~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~------------- 100 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG-EAALAFSSGMAAISTVLLAL--LKAGDHVVASDDLYGGTYRLFERLL------------- 100 (369)
T ss_pred CCChhHHHHHHHHHHHHCC-CCEEEEcCHHHHHHHHHHHH--cCCCCEEEECCCCcchHHHHHHHHH-------------
Confidence 4577899999999999864 45677788999999999766 3467888888887776532211110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++.+|++++++.++ ++++++++++++|++|.+.+ +++|+++|++||+++|+|++|...
T Consensus 101 ---~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~--- 167 (369)
T cd00614 101 ---PKLGIEVTFVDPDDPEALEAAIK---PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATP--- 167 (369)
T ss_pred ---hhcCeEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcch---
Confidence 11223445556668999999887 46889999988888898888 999999999999999999999532
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeeehH-HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
.. ...+...+|+ .|++|.++| | .+.|++++++ ++++.++.. ........++..+++++..++.+ +...
T Consensus 168 ~~--~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~---~~~~g~~~~p~~a~~~l~~l~tl--~~r~ 240 (369)
T cd00614 168 YL--QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFL---RLALGTILSPFDAWLLLRGLKTL--PLRM 240 (369)
T ss_pred hc--CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHH---HHhhCCCCCHHHHHHHHcCCCCH--HHHH
Confidence 11 1112233454 488999984 4 7899998876 777777632 12233356777777766665533 2346
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIIDA 281 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (368)
++..++++++.+.|++.
T Consensus 241 ~~~~~na~~la~~L~~~ 257 (369)
T cd00614 241 ERHSENALKVAEFLEKH 257 (369)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 67777888888877764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=165.95 Aligned_cols=294 Identities=14% Similarity=0.098 Sum_probs=185.1
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++++.. .+++++||+.|+..++... ..+++.|++.++.|..+ .......
T Consensus 61 ~~~p~~~~Le~~iA~~~g~~-~~l~~~sG~~Ai~~al~~l--l~~Gd~Vl~~~~~y~~~-~~~~~~~------------- 123 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGGE-AAVVAASGMGAISSSLWSA--LKAGDHVVASDTLYGCT-FALLNHG------------- 123 (400)
T ss_pred CCCccHHHHHHHHHHHhCCC-cEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCccchH-HHHHHHH-------------
Confidence 45677899999999999753 5788889999998888654 35678888887665543 2222110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEehhhhchh
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFR 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~--~~~li~De~~~~~~ 187 (368)
....+.++..++..|+++++++++ +++++++++.++|++|.+.+ +++|.++|++| |+++|+||+|....
T Consensus 124 --~~~~G~~v~~vd~~d~e~l~~~i~---~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~~ 194 (400)
T PRK06234 124 --LTRYGVEVTFVDTSNLEEVRNALK---ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTPY 194 (400)
T ss_pred --HhhCCeEEEEECCCCHHHHHHHhc---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCchh
Confidence 011223344455558999999997 46888888888888888888 99999999997 99999999996331
Q ss_pred cccCccccccCCCcchhhhhhhccC-Cccc-eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 188 LAYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~sK~~~~-G~~i-G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.+.. . .++.+.-+.|+||.+++ |+++ ||+++++++++.++..+. ....+...++..++.++..++.+ +...+
T Consensus 195 ~~~~--l-~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~-~~~~g~~l~p~~a~l~~~~l~tl--~~r~~ 268 (400)
T PRK06234 195 IQRP--L-QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI-KDMTGSVIGPFEAFLIIRGMKTL--QIRME 268 (400)
T ss_pred cCCc--h-hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHhccCcH--HHHHH
Confidence 1111 1 12333334578899985 7665 888998888877753211 11123466778777777766544 33556
Q ss_pred HHHHHHHHHHHHHHHHHH--h--cC-Cc---------eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 266 YLNKITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~--~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+..++.+++.+.|.+... + ++ +. ....+.|.++.+.+.. ......+|.+.|.--
T Consensus 269 ~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~------------~~~~~~~f~~~l~~~ 336 (400)
T PRK06234 269 KHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKG------------GVEEGKVVMNNVKLA 336 (400)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecC------------cHHHHHHHHHhCCcc
Confidence 677777777777765210 0 00 00 0112456677777631 112245666666544
Q ss_pred CeeecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 332 GVYFAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 332 Gi~~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++..+-|+... ..+++...-|+.+.+++.|+++++.
T Consensus 337 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~ 397 (400)
T PRK06234 337 TLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDL 397 (400)
T ss_pred eEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 44444332111 0123445557888888888888764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-18 Score=155.83 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=181.0
Q ss_pred cHHHHHHHHHHH-HcC-C-----CCCCCChhHHHHHH----HHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 11 YLQVLAALGETM-KKG-T-----SFGAPCLLENVLAE----MVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 11 ~~~v~~a~~~~~-~~~-~-----~~~~~~~~~~~l~~----~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
+|.+++++...+ ... . .+...++...+|.+ .++++++..+..++++||+.|+..++... ..++|.|+
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al--~~~GD~Vl 118 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLAL--LKPGDTIL 118 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHh--cCCCCEEE
Confidence 899999998885 442 1 11112466788887 99999975555466789999999999766 35788888
Q ss_pred EEcCCCCCCchhhhhhc--CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEc-ccCCCCCcc
Q 017633 80 KFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE-PVVGNSGFI 156 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~-~~~~~~g~~ 156 (368)
+...++.+......... +.......+. .+.. ....|++++++.++.. ++++++++ +.+ |..
T Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~-~~~~d~~~le~~l~~~--~~klVi~~~~~~---g~~ 182 (416)
T PRK13034 119 GMSLSHGGHLTHGAKVSLSGKWYNAVQYG----------VDRL-TGLIDYDEVEELAKEH--KPKLIIAGFSAY---PRE 182 (416)
T ss_pred EcCccceeeeecCCcceeccceeeeEEcc----------cccc-cCCcCHHHHHHHHhhc--CCeEEEECCCcc---ccc
Confidence 87766554221111110 0000000000 0000 0113899999998643 46777774 443 444
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcch--hhhhhhccCCccceeeeehH-HHHHHhcC
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRR-DIMEMVAP 231 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~-~~~~~~~~ 231 (368)
.+ +++|.++|++||++||+|++| .|. ..|.. ....+ ..|+ .+++|+++|+. .|++++++ .+.+.++.
T Consensus 183 ~d----l~~l~~la~~~g~~livD~Aha~G~~~~g~~--~~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~ 254 (416)
T PRK13034 183 LD----FARFREIADEVGALLMVDMAHIAGLVAAGEH--PNPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEEIAKKINS 254 (416)
T ss_pred cC----HHHHHHHHHHcCCEEEEeCcccccCcccCCC--CCCCC-CceEEEEeCcccCCCCC-CeEEEECcHHHHHHHHh
Confidence 55 999999999999999999999 333 22221 11111 2454 46789996543 46666654 44444442
Q ss_pred CCCccccccCCCCHHHHHHHH-HHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCC
Q 017633 232 AGPMYQAGTLSGNPLAMTAGI-HTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 307 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~-~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 307 (368)
. .+.+.+.+..+...+++. +.++.+.. .++.+++.++.++++++|.+. ++..... ...+++.+.+..
T Consensus 255 ~--~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~----G~~~~~~~~~t~i~~v~~~~--- 325 (416)
T PRK13034 255 A--VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER----GYDLVSGGTDNHLLLVDLRP--- 325 (416)
T ss_pred h--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc----CCEeccCCCCCcEEEEEcCC---
Confidence 1 111111112233333333 44444422 234678888888888888764 3221111 234555665532
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCC------CCC----cccc--c----cCCCHHHHHHHHHHHHHHHh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPS------QFE----AGFT--S----LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~----~~~~--~----~~~~~~~i~~~~~~l~~~l~ 366 (368)
.......+.+.|.++||.+... ..+ .+|+ + ..++++|++++++.|++++.
T Consensus 326 ---------~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 326 ---------KGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred ---------CCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 1223456778888899999752 112 2332 2 36679999999999998875
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=162.75 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=151.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+... .++++||++|+..++.++ .++++|++.++.|++........
T Consensus 49 ~~~pt~~~le~~la~l~g~~~-~~~~~sG~~ai~~~~~ll---~~Gd~Vl~~~~~y~~t~~~~~~~-------------- 110 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGGDQ-GFACSSGMAAIQLVMSLF---RSGDELIVSSDLYGGTYRLFEEH-------------- 110 (366)
T ss_pred CCCchHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHh---CCCCEEEEecCCcCcHHHHHHHH--------------
Confidence 566788999999999997533 477788999998766432 46789999998888753222111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-chhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~ 188 (368)
....+.++..++..|+++++++++ +++++++++.++|+.+...+ +++|+++|++||+++|+||+|. ++..
T Consensus 111 --~~~~G~~v~~vd~~d~~~l~~~i~---~~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 111 --WKKWNVRFVYVNTASLKAIEQAIT---PNTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred --hhccCceEEEECCCCHHHHHHhcc---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcccccc
Confidence 011223344455558999999987 36778777666666555555 9999999999999999999994 2211
Q ss_pred ccCccccccCCCcchhhhhhhccC--Cccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.. . ..+.+.-+.|+||.++| +.+.|+++++ +++.+.+.. .....+...++..+..+...++.+ ....+
T Consensus 182 -~p--~-~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~l~tl--~~r~~ 252 (366)
T PRK08247 182 -RP--L-EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY---YQNAAGAVLSPFDSWLLIRGMKTL--ALRMR 252 (366)
T ss_pred -Cc--h-hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHH---HHHhcCCCCChHHHHHHHhccCcH--HHHHH
Confidence 11 1 12333445689999985 4789998885 666666542 122233455677777766666544 22344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCce--EEeeccceEEEEe
Q 017633 266 YLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFF 302 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 302 (368)
+.+++++.+.+.|++ ++... ..++.|.++.|.+
T Consensus 253 ~~~~~a~~l~~~L~~----~p~v~~v~~P~~gg~~sf~~ 287 (366)
T PRK08247 253 QHEENAKAIAAFLNE----QPGVTDVLYPGRGGMLSFRL 287 (366)
T ss_pred HHHHHHHHHHHHHHh----CCCeeEEecCCcCcEEEEEE
Confidence 556666666666655 33222 2444677778776
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-18 Score=139.87 Aligned_cols=333 Identities=14% Similarity=0.168 Sum_probs=195.4
Q ss_pred eeccCCCcHHHHHHHHHHHHc--------------CCCCCCC---ChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHH
Q 017633 4 LIILFPSYLQVLAALGETMKK--------------GTSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 63 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~--------------~~~~~~~---~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~ 63 (368)
.+.+|.++|..+-+|.++.++ .-+|+.| ..+...|...+.+.++ ....+.+|+|..++.-
T Consensus 32 ~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fF 111 (417)
T COG3977 32 AIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFF 111 (417)
T ss_pred ceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHH
Confidence 577788777544444333332 1134333 2455666666667776 3678999986666666
Q ss_pred HHHHHHHHhc--CC-ceEEE-EcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC
Q 017633 64 GVLRLARAFT--GR-ERIIK-FEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNK 138 (368)
Q Consensus 64 ~al~~~~~~~--~~-~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~ 138 (368)
-+..++.... +. ++|+. ..+.|-|+..+.+.-..- .++ |..+... .+.=.+++ |.+.|+ +.
T Consensus 112 YlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~f----Vs~kP~iel~~--~g~FKY~v---DF~~l~--i~--- 177 (417)
T COG3977 112 YLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLF----VSAKPNIELLP--AGQFKYHV---DFEHLH--IG--- 177 (417)
T ss_pred HHHHHhcCccCCCcceeEeeccChhhccccccccCccce----eeccCCccccc--ccceeecc---CHHHcc--cc---
Confidence 6556553331 22 23333 366676654332221100 001 1111111 01111112 666553 22
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-chhcccCccccccCCCcc---hhhhhhhccCCc
Q 017633 139 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPD---LTTLGKIIGGGL 214 (368)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~g~~~~~~~~~~~~d---i~s~sK~~~~G~ 214 (368)
+.+.++++.-..+++|.+..++| +.++.++++.||++|++|.+|. .| .+-.|.-...-..++ +.|+||.=-+|.
T Consensus 178 e~~g~ic~SRPtNPTGNVlTdeE-~~kldalA~~~giPliIDnAYg~PF-P~iifsd~~~~w~~NiilC~SLSK~GLPG~ 255 (417)
T COG3977 178 ESTGAICVSRPTNPTGNVLTDEE-LAKLDALARQHGIPLIIDNAYGVPF-PGIIFSDATPLWNENIILCMSLSKLGLPGS 255 (417)
T ss_pred cccceEEecCCCCCCCCcccHHH-HHHHHHHhhhcCCcEEEecccCCCC-CceecccccccCCCCEEEEeehhhcCCCCc
Confidence 46788888777777888777666 9999999999999999999993 23 332222111222233 347888744899
Q ss_pred cceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHH-----HHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 017633 215 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 289 (368)
Q Consensus 215 ~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 289 (368)
|+|-++++++++..+...... -+..+...+.+.+...++ .+.++-.+..++++.+.....|+..+...+...
T Consensus 256 R~GIiIane~viqaitnmn~i---isLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~i 332 (417)
T COG3977 256 RCGIIIANEKVIQAITNMNGI---ISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLI 332 (417)
T ss_pred ceeEEEccHHHHHHHHhccce---eeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceee
Confidence 999999999999998753321 112222333333332222 111122344566666666667776655555443
Q ss_pred EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------------cccccCCCHHHHHH
Q 017633 290 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------------GFTSLAHSSDDIQH 356 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------------~~~~~~~~~~~i~~ 356 (368)
.-+....+.|+.+..-++ ..+++++.|+++||.+.||..+. +|+++..++++++.
T Consensus 333 HkpEGAIFlWLWf~dLPI------------tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~ 400 (417)
T COG3977 333 HKPEGAIFLWLWFKDLPI------------TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEK 400 (417)
T ss_pred ecCCcceeehhhhccCCC------------CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHH
Confidence 434444466666554333 34899999999999999985332 35678889999999
Q ss_pred HHHHHHHHHhh
Q 017633 357 TITAAEKVLRQ 367 (368)
Q Consensus 357 ~~~~l~~~l~~ 367 (368)
.+.+|.+.+++
T Consensus 401 Gva~lae~ve~ 411 (417)
T COG3977 401 GVAILAEEVER 411 (417)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-18 Score=155.98 Aligned_cols=309 Identities=18% Similarity=0.183 Sum_probs=203.0
Q ss_pred cCCCcHHHHHHHHHHHHcCCCC---C---C---CChhHHHHHHHHHhhCC-CC-CeEEEeCChHHHHHHHHHHHHH-hcC
Q 017633 7 LFPSYLQVLAALGETMKKGTSF---G---A---PCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARA-FTG 74 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~---~---~---~~~~~~~l~~~l~~~~~-~~-~~v~~~~~gt~a~~~al~~~~~-~~~ 74 (368)
.|..++.|++++.+.+.+.... + . ..+...++++.++++++ +. +.+++++|+|++++.++..+.. ..+
T Consensus 8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccccc
Confidence 4557889999999987763111 1 1 12456688888999988 55 7999999999999999976632 467
Q ss_pred CceEEEEcCCCCCCchhhhhh---cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++|++.+..|++........ .|.++.....+..... |++++++.++ ++++++++..+.+
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~--------------~~~~~~~~l~---~~~~lv~~~~~~~ 150 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSL--------------DLEDLEEALN---PDTRLVSISHVEN 150 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSC--------------SHHHHHHHHH---TTESEEEEESBET
T ss_pred ccccccccccccccccccccccccchhhhccccccccchh--------------hhhhhhhhhc---cccceEEeecccc
Confidence 889999999888876433333 2333332222211111 7999999997 5899999999998
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~ 228 (368)
.+|...| +++|.++|+++|+++++|-+|+ .|. ...++. ..+|++++| | ++|+.++|+++++++..+.
T Consensus 151 ~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~---~g~~~id~~~--~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~ 220 (371)
T PF00266_consen 151 STGVRNP----IEEIAKLAHEYGALLVVDAAQS---AGCVPIDLDE--LGADFLVFSSHK-LGGPPGLGFLYVRPEAIER 220 (371)
T ss_dssp TTTBBSS----HHHHHHHHHHTTSEEEEE-TTT---TTTSS--TTT--TTESEEEEESTS-TTSSSTEEEEEEEHHHHHH
T ss_pred cccEEee----eceehhhhhccCCceeEechhc---cccccccccc--cccceeeecccc-cCCCCchhhheehhhhhhc
Confidence 8999999 9999999999999999999995 222 223333 345766555 9 8877789999999988888
Q ss_pred hcCCCC-cc-------c----------cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 229 VAPAGP-MY-------Q----------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 229 ~~~~~~-~~-------~----------~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
+..... .. . ...-+.+.....++..+++.+.+.+ .++++++...+.+.+.+.+.+.+....
T Consensus 221 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~~~~~l~~~~~~~~ 299 (371)
T PF00266_consen 221 LRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEYLREALEELPGIEV 299 (371)
T ss_dssp HHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHHHHhhhhcCCceeE
Confidence 742111 00 0 0011456777777778888774322 344445555555555554444443221
Q ss_pred -----EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Cccc--cccCCCH
Q 017633 291 -----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGF--TSLAHSS 351 (368)
Q Consensus 291 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~--~~~~~~~ 351 (368)
....+.++.+.+. ..+..++.+.|.++||.++.+.. ..+| +..++++
T Consensus 300 ~~~~~~~~~~~i~~~~~~--------------~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~ 365 (371)
T PF00266_consen 300 LGPDDEPRRPSIVSFNLP--------------GSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTE 365 (371)
T ss_dssp SSSSCGGBGTTEEEEEET--------------TSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSH
T ss_pred eeecccccccceEEEeec--------------CCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCH
Confidence 2334556666652 22357899999999999998532 2334 4678899
Q ss_pred HHHHHH
Q 017633 352 DDIQHT 357 (368)
Q Consensus 352 ~~i~~~ 357 (368)
+|++++
T Consensus 366 ~dv~~l 371 (371)
T PF00266_consen 366 EDVDRL 371 (371)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=161.53 Aligned_cols=218 Identities=13% Similarity=0.121 Sum_probs=139.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++...+|++.++++.+....+++ +||++|+..++... ..++|.|++..+.|.+.........
T Consensus 42 ~~~p~~~~L~~~lA~l~g~~~~v~~-~sG~~ai~~~l~al--~~~Gd~Vl~~~~~~~~ty~~~~~~~------------- 105 (376)
T PRK06460 42 EANPTVLELTKKIVELENAEMGVAF-SSGMGAISTTALAL--LKPGNSVLVHRDMFGRSYRFFTDYL------------- 105 (376)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEe-CCHHHHHHHHHHHH--hCCCCEEEEecCCcCcHHHHHHHHH-------------
Confidence 3456788999999999975455555 57899999888655 3467888887766654322111110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++.++.+.+++.++ +++++++++.++|++|.+.+ +++|+++|++||+++|+||+|....
T Consensus 106 ---~~~G~~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~-- 173 (376)
T PRK06460 106 ---KNWGVNVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPI-- 173 (376)
T ss_pred ---HhhCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCccc--
Confidence 01112233333334444555443 46788888888888899888 8999999999999999999996321
Q ss_pred cCccccccCCCcchhhhhhhccC--CccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
......++.+.-+.|+||.++| +.++||+++++++++.+.... ...+.+.++..+..++..++.+ +...+++
T Consensus 174 -~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~---~~~g~~~~~~~a~~~l~~~~~l--~~r~~~~ 247 (376)
T PRK06460 174 -NQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMR---RTLGTSLDPHAAYLTLRGIKTL--KIRMDVI 247 (376)
T ss_pred -cCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhchhhH--HHHHHHH
Confidence 1010112332234589999974 367999999998888776321 1222334555555555555544 3456677
Q ss_pred HHHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIIDA 281 (368)
Q Consensus 268 ~~~~~~l~~~l~~~ 281 (368)
.++++++.+.|++.
T Consensus 248 ~~n~~~l~~~L~~~ 261 (376)
T PRK06460 248 NRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHcC
Confidence 77888887777753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=162.56 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=145.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++++... ..+++||+.|+..++... ..++|+|++..+.|.+..........
T Consensus 62 ~~~p~~~~Le~~lA~l~G~~~-~~~~~sG~~Ai~~~l~~~--l~~Gd~Vl~~~~~y~~~~~~~~~~~~------------ 126 (398)
T PRK07504 62 YSNPTVDMFEKRMCALEGAED-ARATASGMAAVTAAILCQ--VKAGDHVVAARALFGSCRYVVETLLP------------ 126 (398)
T ss_pred CCCchHHHHHHHHHHHhCCCe-eeEecCHHHHHHHHHHHH--hCCCCEEEEcCCchhHHHHHHHHHHh------------
Confidence 456778999999999986433 445778999998777544 35678999988877764332211100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+.++..++..|+++++++++ +++++++++.+++++|.+.+ +++|.++|+++|+++|+|++|+..
T Consensus 127 ----~~G~~v~~vd~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~--- 192 (398)
T PRK07504 127 ----RYGIESTLVDGLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATP--- 192 (398)
T ss_pred ----hcCeEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcccc---
Confidence 1111223333348999999887 47888988888888898888 999999999999999999999632
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccce-eeeehHHHHH-HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPVG-AYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~iG-~v~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.......++.+.-+.|++|.+++ |+++| +++.+++.+. .+.. .........++..++.++..++.+ ....++
T Consensus 193 ~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~---~~~~~g~~~s~~~A~~~l~~L~tl--~~R~~~ 267 (398)
T PRK07504 193 LFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD---YFRHTGPSLSPFNAWTLLKGLETL--PVRVRQ 267 (398)
T ss_pred ccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccchH--HHHHHH
Confidence 11111123333334578899984 78886 4566666543 2321 111223356788888888877766 345666
Q ss_pred HHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIID 280 (368)
Q Consensus 267 ~~~~~~~l~~~l~~ 280 (368)
..++.+.+.+.|.+
T Consensus 268 ~~~na~~la~~L~~ 281 (398)
T PRK07504 268 QTESAAAIADFLAG 281 (398)
T ss_pred HHHHHHHHHHHHHc
Confidence 77778887777765
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=161.11 Aligned_cols=217 Identities=15% Similarity=0.079 Sum_probs=146.7
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+. +++++++||+.|+..++..+ ..++|.|++....|.+........
T Consensus 67 ~~~p~~~~le~~lA~l~g~-~~al~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~~~~t~~~~~~~-------------- 129 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA-EACFATASGMSAVFTALGAL--LGAGDRLVAARSLFGSCFVVCNEI-------------- 129 (403)
T ss_pred CCCchHHHHHHHHHHHhCC-CcEEEECChHHHHHHHHHHH--hCCCCEEEEccCCcchHHHHHHHH--------------
Confidence 4566788999999999874 46777789999999988655 356788888765554432211111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++..|+++++++++ +++++++++.++|++|.+.+ +++|+++|+++|++||+|++|+..
T Consensus 130 --~~~~G~~v~~vd~~d~~~l~~ai~---~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~--- 197 (403)
T PRK07810 130 --LPRWGVETVFVDGEDLSQWEEALS---VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP--- 197 (403)
T ss_pred --HHHcCcEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc---
Confidence 011222344445558999999987 46889999888888888888 999999999999999999999522
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-eeeeehHHHHH-HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~i-G~v~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.......++.+.-+.|++|.++| |.++ |+++++++.+. .++. .........++..++.++..++.+ +...++
T Consensus 198 ~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~---~~~~~g~~~s~~~a~l~l~~L~tl--~~R~~~ 272 (403)
T PRK07810 198 LLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPALSAFNAWVLLKGLETL--ALRVRH 272 (403)
T ss_pred ccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 11001123433334578899985 7776 67777766543 2331 111222356888888887777765 445667
Q ss_pred HHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIID 280 (368)
Q Consensus 267 ~~~~~~~l~~~l~~ 280 (368)
..++...+.+.|++
T Consensus 273 ~~~~a~~~a~~L~~ 286 (403)
T PRK07810 273 SNASALRIAEFLEG 286 (403)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777765
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=161.28 Aligned_cols=217 Identities=17% Similarity=0.156 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+...++++.++++++. +.+++++||++|+..++..+ ..++|.||+.+..|.+........
T Consensus 59 ~~p~~~~le~~la~l~g~-~~~v~~ssG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~t~~~~~~~--------------- 120 (390)
T PRK08133 59 TNPTVTMFQERLAALEGA-EACVATASGMAAILAVVMAL--LQAGDHVVSSRSLFGSTVSLFEKI--------------- 120 (390)
T ss_pred CChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCcchhHHHHHHHH---------------
Confidence 456788999999999864 46788899999999998655 356788888776665543211110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
....+.++..++.+|+++++++++ +++++++++.++|++|.+.+ +++|+++|++||+++|+|++|.......
T Consensus 121 -~~~~G~~v~~vd~~d~~~l~~~i~---~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~~~~~ 192 (390)
T PRK08133 121 -FARFGIETTFVDLTDLDAWRAAVR---PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTPALQQ 192 (390)
T ss_pred -HHHcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 011223345555558999999887 47888988888788888887 9999999999999999999985221111
Q ss_pred CccccccCCCcchhhhhhhccC-Cccce-eeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG-GLPVG-AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~-G~~iG-~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
. ..++.+.-+.|+||.+++ |.++| +++.+++.++.+.. .........++..+..++..++.+ ....++..
T Consensus 193 p---l~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~---~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~~~ 264 (390)
T PRK08133 193 P---LKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG---FLRTAGPTLSPFNAWVFLKGLETL--SLRMEAHS 264 (390)
T ss_pred c---hhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH---HHHHhCCCCCHHHHHHHHcccchH--HHHHHHHH
Confidence 1 122332234578899985 67774 56677766655441 112223345666666655555433 23345566
Q ss_pred HHHHHHHHHHHHH
Q 017633 269 KITGELTQGIIDA 281 (368)
Q Consensus 269 ~~~~~l~~~l~~~ 281 (368)
+++..+.+.|++.
T Consensus 265 ~~a~~la~~L~~~ 277 (390)
T PRK08133 265 ANALALAEWLEAH 277 (390)
T ss_pred HHHHHHHHHHHhC
Confidence 6777777776653
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=154.13 Aligned_cols=276 Identities=16% Similarity=0.088 Sum_probs=161.9
Q ss_pred ChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHh-----------cCCceEEEEcCCCCCCchhhhhhcC
Q 017633 32 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKAG 97 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~-----------~~~~~vi~~~~~~~~~~~~~~~~~~ 97 (368)
.+.+++++++++++++ + .+.+++|+|||+|+..++..++.. .+++.+++.+...|..........+
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g 116 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence 3566677777777776 2 357999999999999999776532 1224466666666666555544444
Q ss_pred CCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 017633 98 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 174 (368)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~ 174 (368)
.++...+......+ |++++++++++ ...+++++++...++++|.+.+ +++|+++|++||
T Consensus 117 ~~~~~v~~~~~~~~--------------d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~ 178 (345)
T cd06450 117 VKVRLVPVDEDGRM--------------DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYD 178 (345)
T ss_pred cCeEEeeeCCCCCc--------------CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhC
Confidence 44333222111111 89999999974 1124566665555566787766 999999999999
Q ss_pred CEEEEehhhhch-hcccCccccccCC-Ccch--hhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHH
Q 017633 175 ALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 250 (368)
Q Consensus 175 ~~li~De~~~~~-~~g~~~~~~~~~~-~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 250 (368)
+++++|++|..+ ...........+. ..|. .+++|.++++.++|+++.+ ..+
T Consensus 179 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-------------------------~~~ 233 (345)
T cd06450 179 LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------------------ALK 233 (345)
T ss_pred CeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------------------HHH
Confidence 999999999654 2111100000111 2353 3688988887899988666 222
Q ss_pred HHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 251 GIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 251 ~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
..++++.+..+ +..++..++++++++.|.+ .+ .........+++.+.+.... .......++.+
T Consensus 234 ~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~iv~f~~~~~~---------~~~~~~~~i~~ 300 (345)
T cd06450 234 LWATLRRFGRDGYGEHIDRIVDLAKYLAELIRA----DPGFELLGEPNLSLVCFRLKPSV---------KLDELNYDLSD 300 (345)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCceeEEEEEECCcc---------hhhHHHHHHHH
Confidence 23334433332 2344444555555555444 32 21111123445555442100 00234578999
Q ss_pred HHHHcCeeecCCC----CCcccc--ccC-CCHHHHHHHHHHHHH
Q 017633 327 GMLEEGVYFAPSQ----FEAGFT--SLA-HSSDDIQHTITAAEK 363 (368)
Q Consensus 327 ~l~~~Gi~~~~~~----~~~~~~--~~~-~~~~~i~~~~~~l~~ 363 (368)
.|.++|+.+.+.. ...+|+ ... ++++|++++++.|++
T Consensus 301 ~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 301 RLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 9999965544321 223444 333 499999999999976
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=160.04 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=149.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+..+...++++.++++.+. +..++++||++|+..++... ..++|.|++..+.|++........
T Consensus 61 ~~~p~~~~le~~lA~l~g~-~~~i~~ssG~~Ai~~~l~al--l~~GD~Vi~~~~~y~~~~~~~~~~-------------- 123 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA-EAATAFSTGMAAISNTLYTF--LKPGDRVVSIKDTYGGTNKIFTEF-------------- 123 (398)
T ss_pred CCChHHHHHHHHHHHHhCC-CeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHH--------------
Confidence 4667789999999999875 45677778999999988655 346789999988887642211110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|.++|++||+++|+|++|......
T Consensus 124 --~~~~Gi~v~~vd~~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~~ 194 (398)
T PRK08249 124 --LPRMGVDVTLCETGDHEQIEAEIA---KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPINQ 194 (398)
T ss_pred --HhhCCeEEEEcCCCCHHHHHHhcC---CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCccccC
Confidence 001122233334448999999997 46888888877778888888 999999999999999999999643111
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~i-G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. . .++.+..+.|+||.++| |-++ |++++++++++.++.. ........++..++.++..++.+ +...++.
T Consensus 195 ~~--l-~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~---~~~~g~~~s~~~a~l~l~~l~tL--~~R~~~~ 266 (398)
T PRK08249 195 NP--L-ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY---REINGATMDPMSAYLILRGMKTL--KLRVRQQ 266 (398)
T ss_pred Cc--h-hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhCcchH--HHHHHHH
Confidence 11 1 12333334688899985 5555 6667788887776532 22234467788888877777766 3345677
Q ss_pred HHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIID 280 (368)
Q Consensus 268 ~~~~~~l~~~l~~ 280 (368)
.++++.+.+.|++
T Consensus 267 ~~na~~la~~L~~ 279 (398)
T PRK08249 267 QESAMALAKYLQT 279 (398)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777777775
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=158.51 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=150.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.++++...+|++.++++.+. +++++++||++|+..++... ..++|.|++..+.|.+............
T Consensus 47 R~~~p~~~~le~~lA~l~g~-~~v~~~~gg~~Ai~~~l~al--l~~GD~Vl~~~p~y~~~~~~~~~~~~~~--------- 114 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG-AGAVVTNTGMSAIHLVTTAL--LGPDDLLVAPHDCYGGTYRLLNALAKKG--------- 114 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhhc---------
Confidence 35677789999999998864 67999999999999999766 3577899998888876543322221111
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~ 187 (368)
+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|+++|+++|+++|+||+|... .
T Consensus 115 -------~~~v~~~d~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~ 180 (382)
T TIGR02080 115 -------CFRVLFVDQGDEQALRAALA---QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPAL 180 (382)
T ss_pred -------CeEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 00111122237899999887 36788888877777888888 999999999999999999999633 1
Q ss_pred cccCccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 188 LAYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
. .. . .++.+.-+.|+||.++| +++.|++++ ++++.+.+.. .....+...+++.+..++..++.+. ...
T Consensus 181 ~-~p--l-~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~---~~~~~g~~~sp~~a~l~lr~l~tl~--~R~ 251 (382)
T TIGR02080 181 Q-NP--L-ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW---WANNLGVTGGAFDSYLTLRGLRTLV--ARM 251 (382)
T ss_pred C-Cc--h-hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH---HHHccCCCCCHHHHHHHHcccchHH--HHH
Confidence 1 11 1 12333334588999984 578999866 5667666652 2233344678888888777776552 235
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIID 280 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~ 280 (368)
++..+++..+.+.|++
T Consensus 252 ~~~~~na~~~a~~L~~ 267 (382)
T TIGR02080 252 RLQQRNAQAIVEYLQT 267 (382)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666777777777765
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=155.80 Aligned_cols=247 Identities=17% Similarity=0.104 Sum_probs=156.3
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC----C-----CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH--hcC
Q 017633 7 LFPSYLQVLAALGETMKKGTSFG----A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTG 74 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~----~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~--~~~ 74 (368)
.+..++++++++.+++....... . ..+..+++++.++++++ +.+.+++++|+|+++..++..+.. ..+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~ 87 (364)
T PLN02651 8 TTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDK 87 (364)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 34567899999988775421110 0 12446788899999997 678999999999999998865532 245
Q ss_pred CceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+++|++....++......... .|..+....... .+.. |+++++++++ ++++++++...++.
T Consensus 88 g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~-------------d~~~l~~~i~---~~t~lv~v~~~~n~ 150 (364)
T PLN02651 88 KKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS-DGLV-------------DLDELAAAIR---PDTALVSVMAVNNE 150 (364)
T ss_pred CCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCcC-------------CHHHHHHhcC---CCcEEEEEECCCCC
Confidence 677777665554432222222 222222211111 1111 7899999997 46788888888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhh--hhhccCCccceeeeehHHHHHHh
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
+|.+.+ +++|.++|++||+++++|.+|+ .|. .+..+.++ +|++++ -|. +|+.++|+++++++....+
T Consensus 151 tG~~~~----l~~I~~~~~~~g~~~~vD~a~~---~g~~~~~~~~~~--~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l 220 (364)
T PLN02651 151 IGVIQP----VEEIGELCREKKVLFHTDAAQA---VGKIPVDVDDLG--VDLMSISGHKI-YGPKGVGALYVRRRPRVRL 220 (364)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh---hCCcccCcccCC--CCEEEechhhh-CCCCceEEEEEcCCCCCCC
Confidence 999988 9999999999999999999996 222 23334444 476654 495 5556799998887665544
Q ss_pred cCCC----CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Q 017633 230 APAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 230 ~~~~----~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 282 (368)
...- .....-..+.|..+..++.++++.+.+ . .+.+.++.+.+.+.+.+.+
T Consensus 221 ~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~-~~~i~~~~~~l~~~l~~~l 275 (364)
T PLN02651 221 EPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-E-MDYDEKHMKALRERLLNGL 275 (364)
T ss_pred CccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHHH
Confidence 3210 000011225677778888888888754 2 2444555555555554443
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=159.34 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=146.2
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+.. ..++++||++|+..++... ..+++.|++..+.|.+........
T Consensus 56 ~~~p~~~~le~~lA~l~g~~-~av~~~sG~~Ai~~~l~al--~~~Gd~Vi~~~~~y~~t~~~~~~~-------------- 118 (391)
T TIGR01328 56 LGNPTVSNLEGRIAFLEGTE-AAVATSSGMGAIAATLLTI--LKAGDHLISDECLYGCTFALLEHA-------------- 118 (391)
T ss_pred CCCchHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHH--hCCCCEEEEecCcchHHHHHHHHH--------------
Confidence 45677889999999999743 4677888999999888655 346788888776665432211111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++ +++++++++.++|++|.+.+ +++|.++|+++|+++|+|++|.....+
T Consensus 119 --~~~~G~~~~~vd~~d~e~l~~~i~---~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~~~~ 189 (391)
T TIGR01328 119 --LTKFGIQVDFINMAIPEEVKAHIK---DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATPMLT 189 (391)
T ss_pred --HhcCCeEEEEECCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchhccC
Confidence 011233445555568999999887 46888888888888888888 999999999999999999999522111
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccc-ceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~-iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. . ..+.+.-+.|+||.+++ |.+ .|+++.++++++.++..... .......++..++.++..++.+ ....++.
T Consensus 190 ~~--~-~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~-~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~ 263 (391)
T TIGR01328 190 NP--V-ALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIK-DMTGSVISPFDAWLILRGLKTL--NIRMKRH 263 (391)
T ss_pred Cc--h-hcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHH-hCCCCCCCcHHHHHHHhCcCcH--HHHHHHH
Confidence 11 1 12222234578899984 655 56777888887776631111 1112345666676666655544 3345667
Q ss_pred HHHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIIDA 281 (368)
Q Consensus 268 ~~~~~~l~~~l~~~ 281 (368)
.++.+++.+.|++.
T Consensus 264 ~~na~~la~~L~~~ 277 (391)
T TIGR01328 264 SENAMKVAEYLKSH 277 (391)
T ss_pred HHHHHHHHHHHHhC
Confidence 77778887777663
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-18 Score=154.96 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=127.0
Q ss_pred CCCcHHHHHHHHHHHH--cCC-CCC--C------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH--hc
Q 017633 8 FPSYLQVLAALGETMK--KGT-SFG--A------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FT 73 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~--~~~-~~~--~------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~--~~ 73 (368)
+..++.+++++.+++. ... ... . ..+...++++.++++++ +.+.+++++|||+++..++..+.. ..
T Consensus 13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~ 92 (404)
T PRK14012 13 TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQK 92 (404)
T ss_pred CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcC
Confidence 4467789999988875 211 110 0 01345678889999998 668899999999999999865532 24
Q ss_pred CCceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++.|++.+..|+......... .|..+....... ++.. |+++++++++ ++++++++...++
T Consensus 93 ~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~-~g~~-------------d~~~l~~~i~---~~t~lv~~~~~~n 155 (404)
T PRK14012 93 KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS-NGII-------------DLEKLEAAMR---DDTILVSIMHVNN 155 (404)
T ss_pred CCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-CCcC-------------CHHHHHHhcC---CCCEEEEEECcCC
Confidence 5677888776665443332222 233322221111 1111 7999999997 4678888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhh--hhccCCccceeeeehHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~ 225 (368)
++|.+.+ +++|.++|++||+++|+|++|+ .|.. .... ...+|++++| |.++++ ++|+++++++.
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~---~g~~~~~~~--~~~~D~~~~s~~K~~gp~-g~G~l~~~~~~ 222 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS---VGKVPIDLS--KLKVDLMSFSAHKIYGPK-GIGALYVRRKP 222 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh---cCCcccCcc--cCCCCEEEEehhhccCCC-ceEEEEEecCC
Confidence 8898888 9999999999999999999996 2221 1222 2346766554 977643 78988776653
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=151.49 Aligned_cols=287 Identities=16% Similarity=0.090 Sum_probs=168.1
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCC-C--CC------ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh--c
Q 017633 6 ILFPSYLQVLAALGETMKKGTSF-G--AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--T 73 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~-~--~~------~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--~ 73 (368)
..+..++.+++++.+++...... + .. .+..+++++.++++++ +.+++++++|++++++.++...... .
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~ 85 (353)
T TIGR03235 6 ATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQ 85 (353)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34567889999999887542111 1 11 1346788999999998 6789999999999999998665432 1
Q ss_pred CC-ceEEEEcCCCCCCch-hhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 74 GR-ERIIKFEGCYHGHAD-PFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 74 ~~-~~vi~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
++ +.|++.. ..|.+.. ..... .|.++...+.... +. .|++++++.++ ++++++++...
T Consensus 86 ~g~~~vi~~~-~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~-------------~d~~~l~~~l~---~~~~lv~~~~~ 147 (353)
T TIGR03235 86 KGKKHIITSA-IEHPAVLEPIRALERNGFTVTYLPVDES-GR-------------IDVDELADAIR---PDTLLVSIMHV 147 (353)
T ss_pred CCCCeeeEcc-cccHHHHHHHHHHHhcCCEEEEEccCCC-Cc-------------CCHHHHHHhCC---CCCEEEEEEcc
Confidence 23 4555544 3343322 22111 2322222111111 11 17899999886 36788888888
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhh--hhhhccCCccceeeeehHHHH
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s--~sK~~~~G~~iG~v~~~~~~~ 226 (368)
++++|.+.+ +++|.++|++||+++++|++|+ .|. .+..+.+ .+|+++ ..|.++ ..++|+++++++..
T Consensus 148 ~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~---~g~~~~~~~~~--~~D~~~~s~~K~~g-p~g~g~l~~~~~~~ 217 (353)
T TIGR03235 148 NNETGSIQP----IREIAEVLEAHEAFFHVDAAQV---VGKITVDLSAD--RIDLISCSGHKIYG-PKGIGALVIRKRGK 217 (353)
T ss_pred cCCceeccC----HHHHHHHHHHcCCEEEEEchhh---cCCcccccccc--CCCEEEeehhhcCC-CCceEEEEEccCcc
Confidence 888999988 9999999999999999999995 222 2223333 346654 449764 33589988887643
Q ss_pred HH--hcC---C-CCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE---eecc
Q 017633 227 EM--VAP---A-GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYIS 295 (368)
Q Consensus 227 ~~--~~~---~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~ 295 (368)
.. +.. . .........+.+.....+..++++.+.. +...++++++.+++++.|++ .++.... ....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~----~g~~~~~~~~~~~~ 293 (353)
T TIGR03235 218 PKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT----LGVKLNGDPAETIP 293 (353)
T ss_pred cccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----CCeEEeCCcccccC
Confidence 22 111 0 0000011224566666777778776642 22344555555555555443 2321111 1112
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 339 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~ 339 (368)
.++.+.+ +..+..++.+.|. +||.++++.
T Consensus 294 ~i~~~~~--------------~~~~~~~v~~~L~-~~i~v~~g~ 322 (353)
T TIGR03235 294 HILNFSI--------------DGVNSEALIVNLR-ADAAVSTGS 322 (353)
T ss_pred CEEEEEe--------------CCcCHHHHHHHHh-CCeEEEchh
Confidence 2333332 2223467888885 489998874
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=155.97 Aligned_cols=218 Identities=17% Similarity=0.180 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh---hcCCCccccCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLP 106 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 106 (368)
++++....|++.++++.+. +++++++||++|+..++..+. .++|.|++..+.|.++...... ..|.+... ++
T Consensus 80 ~~~Pt~~~Le~~lA~leg~-~~~iv~~sG~~Ai~~~l~al~--~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~--~~ 154 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA-ESAALFSSGMSAIATTLLAFV--RPGDVILHSQPLYGGTETLLAKTFRNFGVGAVG--FA 154 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC-CcEEEEccHHHHHHHHHHHHh--CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEE--Ee
Confidence 5667788999999999864 468888899999988886552 4678999999888886443221 12221111 11
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHHcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEE
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLI 178 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~------~~~~li 178 (368)
...|.+++++.+.+. .+++++++++..+|++|.+.+ ++++.+++++ +++++|
T Consensus 155 ----------------~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vv 214 (427)
T PRK07049 155 ----------------DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRPIIA 214 (427)
T ss_pred ----------------CCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCCEEE
Confidence 112677888777531 136888888888788888877 5666666655 799999
Q ss_pred Eehhhhch-hcccCccccccCCCcchhhhhhhcc--CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHH
Q 017633 179 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG--GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 255 (368)
Q Consensus 179 ~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~--~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l 255 (368)
+||+|.+. ... . . ..+...-+.|+||.++ +|+|+||+++++++++.+.. .......+.++..+.++...+
T Consensus 215 vDety~~~~~~~-p--l-~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~---~~~~~g~~ls~~~a~l~~r~L 287 (427)
T PRK07049 215 CDNTLLGPVFQK-P--L-EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRA---LRSAIGTQLDPHSCWMLGRSL 287 (427)
T ss_pred EECCccccccCC-c--c-ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHcCC
Confidence 99998643 211 1 1 1233333458999999 57999999999888887763 222223457888888877777
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 256 KRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
+.+ ....++..++++.+.+.|++.
T Consensus 288 ~tl--~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 288 ETL--VLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred ChH--HHHHHHHHHHHHHHHHHHHhC
Confidence 644 233456677777777777653
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=153.73 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=149.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.++++...+|+++++++.+. +.+++++||++|+..++... ..++|.|++.++.|++.............
T Consensus 48 R~~~pt~~~L~~~lA~l~g~-~~~i~~~sg~~Ai~~~l~~l--~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g-------- 116 (386)
T PRK08045 48 RRGNPTRDVVQRALAELEGG-AGAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKRGC-------- 116 (386)
T ss_pred CCCCccHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhhCC--------
Confidence 35677889999999999874 46999999999999998755 35778999998888765433222211100
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 117 --------i~v~~vd~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-- 179 (386)
T PRK08045 117 --------YRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-- 179 (386)
T ss_pred --------eEEEEeCCCCHHHHHHhcc---cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc--
Confidence 0011111227899999886 46788888877778888888 999999999999999999999633
Q ss_pred ccCccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.......++.+.-+.|++|.++| +...|++++ ++++.+.+.. .....+...+++.+..+..+++.+ +-..+
T Consensus 180 -~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~---~~~~~g~~~~p~~~~l~~rgl~tl--~~R~~ 253 (386)
T PRK08045 180 -ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_pred -ccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhccH--HHHHH
Confidence 11111122333234578999984 467898866 5667666652 222334467888888888887755 33456
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..+++..+.+.|++
T Consensus 254 ~~~~na~~la~~L~~ 268 (386)
T PRK08045 254 LAQRNAQAIVKYLQT 268 (386)
T ss_pred HHHHHHHHHHHHHHc
Confidence 677777777777765
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-19 Score=158.94 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=143.3
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++++. +.+++++||++|+..++... ..++++|++..+.|.+. ...+...
T Consensus 51 ~~~p~~~~le~~la~l~g~-~~~~~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~~~~t-~~~~~~~------------- 113 (380)
T TIGR01325 51 YANPTVAAFEERIAALEGA-ERAVATATGMSAIQAALMTL--LQAGDHVVASRSLFGST-VGFISEI------------- 113 (380)
T ss_pred CCCchHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEecCCcchH-HHHHHHH-------------
Confidence 4567789999999998864 56788899999999999655 24577888866544332 2222110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++ ++++++++++++++.|.+.+ +++|.++|+++|+++|+|++|+....
T Consensus 114 --~~~~g~~v~~v~~~d~~~l~~~i~---~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~~- 183 (380)
T TIGR01325 114 --LPRFGIEVSFVDPTDLNAWEAAVK---PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPVL- 183 (380)
T ss_pred --HHHhCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 001122344455558899988886 46788888888887888888 99999999999999999999963311
Q ss_pred cCccccccCCCcch--hhhhhhccC-Cccc-eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G~~i-G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.......+|+ .|++|.++| |.++ |++++++++++.+... ........++..+..++..++.+. ...+
T Consensus 184 ----~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~---~~~~g~~~~p~~a~~~l~~l~tl~--~r~~ 254 (380)
T TIGR01325 184 ----QQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVY---LRHTGPAMSPFNAWVLLKGLETLS--LRMQ 254 (380)
T ss_pred ----CCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHH---HHhhCCCCCHHHHHHHHhccCcHH--HHHH
Confidence 1112223455 478899995 5666 6677788777766521 111222445666666666655542 2456
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..++++.+.+.|++
T Consensus 255 ~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 255 KQFDSALAIAEWLQA 269 (380)
T ss_pred HHHHHHHHHHHHHHc
Confidence 677777777777765
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=157.54 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=145.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+..+. ++++||++|+..++..+ ..++|+|++..+.|++..........
T Consensus 57 ~~~p~~~~Le~~lA~l~g~~~~-v~~~sG~~Ai~~~l~al--l~pGD~Vvv~~p~Y~~t~~~~~~~~~------------ 121 (405)
T PRK08776 57 SGNPTRDLLGEALAELEGGAGG-VITATGMGAINLVLNAL--LQPGDTLVVPHDAYGGSWRLFNALAK------------ 121 (405)
T ss_pred CCChHHHHHHHHHHHHhCCCce-EEEcCHHHHHHHHHHHH--hCCCCEEEEccCCchHHHHHHHHHHH------------
Confidence 4556678999999998876444 56667999998888655 35788999988888764322111100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|+++|++||+++|+||+|..- .
T Consensus 122 ----~~g~~v~~v~~~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~--~ 188 (405)
T PRK08776 122 ----KGHFALITADLTDPRSLADALA---QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSP--A 188 (405)
T ss_pred ----hcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccc--c
Confidence 0112233344448899999886 36777777777677788776 999999999999999999999521 0
Q ss_pred cCccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
..... .++.+.-+.|.+|.++| +...|+++. ++++.+.+.. ......+..+++.+......++.+ +.+.++
T Consensus 189 ~~~pl-~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~---~~~~~g~~~s~~~a~l~~~gl~tl--~~r~~~ 262 (405)
T PRK08776 189 LQKPL-EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW---WANALGLTGSPFDAFLTLRGLRTL--DARLRV 262 (405)
T ss_pred cCCcc-cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhCcH--HHHHHH
Confidence 01111 13333334577899984 467888866 5667666642 112223356888888877777655 345667
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIIDA 281 (368)
Q Consensus 267 ~~~~~~~l~~~l~~~ 281 (368)
..+++..+.+.|++.
T Consensus 263 ~~~na~~la~~L~~~ 277 (405)
T PRK08776 263 HQENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777777653
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=150.26 Aligned_cols=310 Identities=16% Similarity=0.091 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
++-++++.+.+..... ++.+...+|++.++++++. +.+++++|||+|+..++..+ ...++|+||+.+.+|.+....
T Consensus 14 ~~e~~~~~~~l~~~~~--~~g~~~~~le~~la~~~g~-~~~v~~~sgt~al~lal~al-~~~~Gd~Viv~~~~~~~~~~~ 89 (379)
T PRK11658 14 DEELAAVKEVLRSGWI--TTGPKNQALEQAFCQLTGN-QHAIAVSSATAGMHITLMAL-GIGPGDEVITPSLTWVSTLNM 89 (379)
T ss_pred HHHHHHHHHHHHcCCc--cCCHhHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHHc-CCCCCCEEEECCCcHHHHHHH
Confidence 4557777777765433 2345678999999999864 36788889999999999755 124678999988888776433
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
+...|..+............ |+++++++++ +++++++ |++ .+|...+ +++|+++|+
T Consensus 90 -~~~~G~~~v~vd~~~~~~~~-------------d~~~l~~~i~---~~tkav~--~~~-~~G~~~d----~~~i~~~a~ 145 (379)
T PRK11658 90 -IVLLGATPVMVDVDRDTLMV-------------TPEAIEAAIT---PRTKAII--PVH-YAGAPAD----LDAIRAIGE 145 (379)
T ss_pred -HHHcCCEEEEEecCCCcCCc-------------CHHHHHHhcc---cCCeEEE--EeC-CCCCcCC----HHHHHHHHH
Confidence 33334433222221111111 7999999987 3677766 333 2566666 999999999
Q ss_pred HhCCEEEEehhhh-ch-hcccCccccccCCCcchhhhh--hhccCCccceeeee-hHHHHHHhcC---CCCc--------
Q 017633 172 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG-RRDIMEMVAP---AGPM-------- 235 (368)
Q Consensus 172 ~~~~~li~De~~~-~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~-~~~~~~~~~~---~~~~-------- 235 (368)
+||+++|+|++|+ |. ..|.. ...++ .++.||+ |.+++ .+.|+++. ++++.+.++. .+..
T Consensus 146 ~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 220 (379)
T PRK11658 146 RYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSFHAIKNITC-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQT 220 (379)
T ss_pred HcCCeEEEECCCccCCeECCee--cCCCC--CEEEeCCCCCcCcc-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhc
Confidence 9999999999996 33 22211 12233 3677777 65644 46777766 4666655432 1100
Q ss_pred ----------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEE-eeccceEEEEee
Q 017633 236 ----------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG-GYISGMFGFFFT 303 (368)
Q Consensus 236 ----------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~ 303 (368)
..+.++..+.+.++.++..++.+ +++.++.+++.+++++.|.++... ...+... ......+.+.+.
T Consensus 221 ~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
T PRK11658 221 QGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVD 298 (379)
T ss_pred ccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEEC
Confidence 01223344556666666666544 334555566666666666543100 0000000 000112222221
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------------------------ccc--ccCCCHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------------------------GFT--SLAHSSDDIQH 356 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------------------------~~~--~~~~~~~~i~~ 356 (368)
.. ....+..++.+.|.++||.++....+. +.+ ...++++|+++
T Consensus 299 ~~----------~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~ 368 (379)
T PRK11658 299 EE----------RCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDR 368 (379)
T ss_pred Cc----------cccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHH
Confidence 10 011235789999999998876321110 122 24579999999
Q ss_pred HHHHHHHHHh
Q 017633 357 TITAAEKVLR 366 (368)
Q Consensus 357 ~~~~l~~~l~ 366 (368)
.++.|++++.
T Consensus 369 i~~~i~~~~~ 378 (379)
T PRK11658 369 VITALQQIAG 378 (379)
T ss_pred HHHHHHHHHh
Confidence 9999999764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-18 Score=152.26 Aligned_cols=307 Identities=17% Similarity=0.122 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
.+-++++.+.+... .+........++.++++++++ ...++.++|||.|+.++++++ ...+++.||+..-++.....+
T Consensus 5 ~e~~~~v~~~l~s~-~~~~~g~~~~~fE~~~a~~~g-~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~~~a 81 (363)
T PF01041_consen 5 EEEIDAVLEVLRSG-WLSTYGPYVEEFEKEFAEYFG-VKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPATASA 81 (363)
T ss_dssp HHHHHHHHHHHHHT-CCSSSSHHHHHHHHHHHHHHT-SSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THHHHH
T ss_pred HHHHHHHHHHHHhC-CccCCCHHHHHHHHHHHHHhC-CCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHHHHH
Confidence 34566677777664 222225778899999999885 567888889999999999875 456789999988877776555
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
....+..++..+--+....+ |+++++++++ ++++++++.+..+ ...+ +++|.++|+
T Consensus 82 i~~~G~~pv~~Di~~~~~~i--------------d~~~~~~~i~---~~t~ai~~~h~~G---~~~d----~~~i~~~~~ 137 (363)
T PF01041_consen 82 ILWAGAEPVFVDIDPETLNI--------------DPEALEKAIT---PKTKAILVVHLFG---NPAD----MDAIRAIAR 137 (363)
T ss_dssp HHHTT-EEEEE-BETTTSSB---------------HHHHHHHHH---TTEEEEEEE-GGG---B-------HHHHHHHHH
T ss_pred HHHhccEEEEEeccCCcCCc--------------CHHHHHHHhc---cCccEEEEecCCC---Cccc----HHHHHHHHH
Confidence 55554444433322333333 8999999999 5788888877764 3445 999999999
Q ss_pred HhCCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccCCccceeeeeh-HHHHHHh---cCCCCc-------c
Q 017633 172 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMV---APAGPM-------Y 236 (368)
Q Consensus 172 ~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~G~~iG~v~~~-~~~~~~~---~~~~~~-------~ 236 (368)
+||++||+|.+|+- |..+.-...|..-|+.+|| |.+++|- .|+++.+ +++.+.+ +..+.. .
T Consensus 138 ~~~i~lIeD~a~a~---g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (363)
T PF01041_consen 138 KHGIPLIEDAAQAF---GARYKGRPVGSFGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYR 213 (363)
T ss_dssp HTT-EEEEE-TTTT---T-EETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTE
T ss_pred HcCCcEEEcccccc---CceeCCEeccCCCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCcccccccc
Confidence 99999999999962 2211112233333554443 9997553 4777664 5555544 322211 0
Q ss_pred ----ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh--cCCceEEe-eccceEEEEeecCCCcc
Q 017633 237 ----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGG-YISGMFGFFFTEGPVYN 309 (368)
Q Consensus 237 ----~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 309 (368)
.+..+..+.+.++.++..|+.+ +...++.+++.+.+.+.|.+.... .+.+.... .....+.+.+...
T Consensus 214 ~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~---- 287 (363)
T PF01041_consen 214 HELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDE---- 287 (363)
T ss_dssp ESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCC----
T ss_pred ccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccc----
Confidence 2345677888888888888755 334555556666666665553210 01110100 1122223333210
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeecCCCC-Ccc---------------------------cc--ccCCCHHHHHHHHH
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAG---------------------------FT--SLAHSSDDIQHTIT 359 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~---------------------------~~--~~~~~~~~i~~~~~ 359 (368)
......++.+.|.++||.+.+... +.. .+ ...++++|++++++
T Consensus 288 -------~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~ 360 (363)
T PF01041_consen 288 -------ALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAE 360 (363)
T ss_dssp -------GCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHH
T ss_pred -------ccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhh
Confidence 002357899999999999987652 210 11 25678999999998
Q ss_pred HHH
Q 017633 360 AAE 362 (368)
Q Consensus 360 ~l~ 362 (368)
.|+
T Consensus 361 ~ir 363 (363)
T PF01041_consen 361 AIR 363 (363)
T ss_dssp HHH
T ss_pred ccC
Confidence 875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=154.97 Aligned_cols=290 Identities=10% Similarity=0.049 Sum_probs=181.8
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh-hcCCCccccCCCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPG 110 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 110 (368)
++....|++.++++.+. +.+++++||++|+..++... ..++|.|++.++.|++.....-. ....
T Consensus 49 nPt~~~lE~~lA~l~g~-~~~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~~~~~~~------------ 113 (377)
T TIGR01324 49 TLTHFALQDAMCELEGG-AGCYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCDIVLKRM------------ 113 (377)
T ss_pred CccHHHHHHHHHHHhCC-CcEEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHHHhc------------
Confidence 45678999999998864 57788889999999999755 35788999988888764321100 0000
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
+.++..++..+.+++++.++ +++++++++.+.|++|...+ +++|+++|++||+++|+|++|+ .|.
T Consensus 114 -----gi~v~~~d~~~~e~l~~~i~---~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a---~g~ 178 (377)
T TIGR01324 114 -----GVDITYYDPLIGEDIATLIQ---PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA---AGL 178 (377)
T ss_pred -----CcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc---ccc
Confidence 11222222224478888886 57889999988888888777 9999999999999999999995 222
Q ss_pred CccccccCCCcchhhhhhhccC--CccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
.+....++.+.-+.|.+|.++| +...|+++++++.++.+.. .........++..+...+..++.+ .-..++..
T Consensus 179 ~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~---~~~~~G~~l~p~~a~~~~rgl~tl--~~R~~~~~ 253 (377)
T TIGR01324 179 LFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE---HSYLMGQMVDADDAYTTLRGLRTL--GVRLKQHQ 253 (377)
T ss_pred ccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHH---HHHHhCCCCCHHHHHHHHhhhhhH--HHHHHHHH
Confidence 2111223333233467899984 3678888888877666552 112223355777777776676655 33456667
Q ss_pred HHHHHHHHHHHHHHH--h--cC-Cc---------eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCee
Q 017633 269 KITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 334 (368)
Q Consensus 269 ~~~~~l~~~l~~~~~--~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 334 (368)
+++..+.+.|++... + ++ +. ....+.+.++.+.+... ......+|.+.|.--++.
T Consensus 254 ~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~-----------~~~~~~~~~~~l~~~~~~ 322 (377)
T TIGR01324 254 ESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL-----------TQKQVHAFLDHLQLFGLG 322 (377)
T ss_pred HHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC-----------CHHHHHHHHHhCCcceEe
Confidence 777777777766311 0 01 00 01224567777777320 123345677777544444
Q ss_pred ecCCCCCc---------------------cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 335 FAPSQFEA---------------------GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 335 ~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++-|+... -.+++.+.-|+.+.+++-|+++++.
T Consensus 323 ~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 323 YSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGLENVDDLKADLKAGFEA 376 (377)
T ss_pred ccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 43332111 0123445557888888888888865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=137.30 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=174.4
Q ss_pred HHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCC
Q 017633 37 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 115 (368)
Q Consensus 37 ~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (368)
+++..+++--+ .++.+++..|..+.+...++.++. +++++|+..+++|.=+...+... +
T Consensus 73 ~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~-PGkeKIl~cPPtysMY~v~A~iN-d------------------ 132 (375)
T KOG0633|consen 73 RLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD-PGKEKILDCPPTYSMYVVDAAIN-D------------------ 132 (375)
T ss_pred hhhhhcccCCCCCccceEEecCcHHHHHHHHhheec-CCccceeecCCcceeEEEEeecC-C------------------
Confidence 33434433333 478999999888888888888765 57789999999886543322221 1
Q ss_pred CCcccccCCC-----CHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc
Q 017633 116 TYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189 (368)
Q Consensus 116 ~~~~~~~~~~-----d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g 189 (368)
..++.+|.+ |.+++.+.+... +.++.+++.+..+++|....+.+ +++|.+.-. +.++++||+|.+| ..+
T Consensus 133 -~eVvkvpl~pdF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~ik~~d-i~KiLe~p~--nglVVvDEAYidFsg~~ 207 (375)
T KOG0633|consen 133 -AEVVKVPLNPDFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSIIKEDD-ILKILEMPD--NGLVVVDEAYIDFSGVE 207 (375)
T ss_pred -ceEEEecCCCCccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccccHHH-HHHHHhCCC--CcEEEEeeeeEeecccc
Confidence 122222221 788888888743 57888877777777787777444 666666554 8999999999988 433
Q ss_pred c-CccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 Y-GGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~-~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
+ .-....+..-..+.||||.|| +|+|+|+...+..+++.+...+ ..+..+..+..+|+++++-- .....+.+
T Consensus 208 S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K-----aPYNiS~~~s~~AL~Als~~-n~kkme~~ 281 (375)
T KOG0633|consen 208 SRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK-----APYNISVAGSVAALAALSDS-NGKKMEDV 281 (375)
T ss_pred ccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc-----CCccccchhHHHHHHhcCcc-cchHHHHH
Confidence 2 111222222233679999999 9999999999999999887544 44455666666666666511 11122233
Q ss_pred HHHHHHHHHHHHHHHHhcCCceE--EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCc--
Q 017633 268 NKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-- 342 (368)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~-- 342 (368)
+...-+-|.+|-+.+...++... .+...+|+.+++... +...++.+...+. +.||+++..+.-.
T Consensus 282 rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~-----------~n~~akkly~q~at~~gVvVRfrgse~~c 350 (375)
T KOG0633|consen 282 RDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGG-----------DNGMAKKLYKQDATKMGVVVRFRGSEEGC 350 (375)
T ss_pred HHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCC-----------CcHHHHHHHHHHHHhcceEEEEcCCcccc
Confidence 33333333444443333333221 122234555555432 3344555555554 6799999765322
Q ss_pred -cccc-cCCCHHHHHHHHHHHHHHH
Q 017633 343 -GFTS-LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 343 -~~~~-~~~~~~~i~~~~~~l~~~l 365 (368)
.+++ ...+.|+...+++.+++.+
T Consensus 351 ~G~lRitvGt~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 351 KGYLRITVGTPEENTVLMKCLKQFL 375 (375)
T ss_pred ceeEEEEcCCcccchHHHHHHHhhC
Confidence 2232 2447788889999998763
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=155.78 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=148.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...+|++.++++.+... .++++||+.|+..++... ..++|+||+..+.|.+. .......
T Consensus 62 ~~~p~~~~le~~lA~l~g~~~-~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y~~t-~~~~~~~------------- 124 (403)
T PRK07503 62 ISNPTLALLEQRMASLEGGEA-AVALASGMGAITATLWTL--LRPGDEVIVDQTLYGCT-FAFLHHG------------- 124 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHH--cCCCCEEEEccCccchH-HHHHHHH-------------
Confidence 456678899999999987544 566668999999998655 35778898877665332 2222110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|.++|++||+++|+|++|+....+
T Consensus 125 --~~~~G~~v~~vd~~d~~~l~~~i~---~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~~~~ 195 (403)
T PRK07503 125 --LGEFGVTVRHVDLTDPAALKAAIS---DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTPYLQ 195 (403)
T ss_pred --HhhCCEEEEEeCCCCHHHHHHhcC---ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 011223444555558999999987 46888888877777888888 999999999999999999999632111
Q ss_pred cCccccccCCCcchhhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. . .++.+.-+.|+||.+++ | .+.|+++.++++++.++... .........+++.++.++..++.+ +...++.
T Consensus 196 ~~--l-~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~-~~~~~g~~~s~~~a~l~l~~L~tl--~~r~~~~ 269 (403)
T PRK07503 196 RP--L-ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG-LKDMTGAVMSPFDAFLLMRGLKTL--ALRMDRH 269 (403)
T ss_pred Cc--h-hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh-HHhCcCCCCCHHHHHHHHcCcchH--HHHHHHH
Confidence 11 1 12332334578999995 5 78899888888887775211 111223567888888777777655 3345566
Q ss_pred HHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIID 280 (368)
Q Consensus 268 ~~~~~~l~~~l~~ 280 (368)
.++.+.+.+.|.+
T Consensus 270 ~~na~~~a~~L~~ 282 (403)
T PRK07503 270 CASAQAVAEWLAR 282 (403)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777765
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=157.88 Aligned_cols=287 Identities=15% Similarity=0.119 Sum_probs=175.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+..+...+|++.++++.+..+. ++++||+.|+..++... ..++|+|++....|++.........
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~y~~t~~~~~~~~------------- 123 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLEGAEDA-RGFASGMAAISSTVLSF--VEPGDRIVAVRHVYPDAFRLFETIL------------- 123 (389)
T ss_pred CCChhHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHH-------------
Confidence 3456678999999999875444 45578999999888654 3578899998887776432111110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++..|++++++++. ++++++++.+.+..+...+ +++|+++|++||+++|+|++|......
T Consensus 124 ---~~~G~~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a~~~~~ 192 (389)
T PRK05968 124 ---KRMGVEVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWASPVFQ 192 (389)
T ss_pred ---HHcCceEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcchhcc
Confidence 01122233344447899988873 5677877765554444444 999999999999999999999533111
Q ss_pred cCccccccCCCcchhhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. ..++.+.-+.|++|.++| | .+.|+++.++++++.++.......+ ...++..++.++..++.+ ....++.
T Consensus 193 ~p---~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--~~~~~~~A~~~l~~L~tl--~~r~~~~ 265 (389)
T PRK05968 193 RP---ITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--AKLSPFEAWLLLRGLRTL--PLRMKAH 265 (389)
T ss_pred Cc---hhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--CCCChHHHHHHHcccCcH--HHHHHHH
Confidence 11 123443334578899995 3 6788888888877766531111112 245667777766666544 3344555
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEE-------------eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCee
Q 017633 268 NKITGELTQGIIDAGKKAGHAICG-------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 334 (368)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 334 (368)
.++++.+.+.|++ .+....+ .+.++++.|.+. ......+|.+.|...++.
T Consensus 266 ~~~a~~la~~L~~----~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~-------------~~~~~~~f~~~L~~~~~~ 328 (389)
T PRK05968 266 EASALEIARRLKA----HPVVERVCHPALANHPPAGLSGTSGLFSFIFR-------------EGIDVRAFADALKLFRLG 328 (389)
T ss_pred HHHHHHHHHHHHh----CCCccEEECCCCCCChHHhCCCCceEEEEEEC-------------CHHHHHHHHHhCCccEEe
Confidence 5556666666654 3321111 134557777763 123457888888766666
Q ss_pred ecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 335 FAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 335 ~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++-|+... ..+++...-|+.+.+++-|++++++
T Consensus 329 ~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 329 VSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred cCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 65543221 0123344556777888888888764
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=151.73 Aligned_cols=301 Identities=15% Similarity=0.073 Sum_probs=178.1
Q ss_pred HHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhh
Q 017633 16 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95 (368)
Q Consensus 16 ~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 95 (368)
+++.+.+.... + ...+...++++.++++++. +++++++||++|++.++.... ..+++.|++...+|+....... .
T Consensus 3 ~~~~~~~~~~~-~-~~~~~~~~~~~~la~~~~~-~~~~~~~sgt~al~~~l~~l~-~~~gd~vl~~~~~~~~~~~~~~-~ 77 (352)
T cd00616 3 EAVEEVLDSGW-L-TLGPKVREFEKAFAEYLGV-KYAVAVSSGTAALHLALRALG-IGPGDEVIVPSFTFVATANAIL-L 77 (352)
T ss_pred HHHHHHHHcCC-c-cCCHHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHHHH-H
Confidence 45666665532 2 3456788999999999974 568888899999999997652 2467889998888887644333 3
Q ss_pred cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 017633 96 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 175 (368)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~ 175 (368)
.|..+....+...... .|++++++.++ ++++++++.+ ++|...+ +++|.++|++||+
T Consensus 78 ~g~~~~~~~~~~~~~~-------------~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~i 134 (352)
T cd00616 78 LGATPVFVDIDPDTYN-------------IDPELIEAAIT---PRTKAIIPVH---LYGNPAD----MDAIMAIAKRHGL 134 (352)
T ss_pred cCCeEEEEecCCCcCC-------------cCHHHHHHhcC---cCCeEEEEEC---CCCCcCC----HHHHHHHHHHcCC
Confidence 3333222111110111 17899998885 4677777653 3566666 9999999999999
Q ss_pred EEEEehhhhchhcccCccccccCCCcch--hhhh--hhccCCccceeeeeh-HHHHHHhcC---CCCc---------ccc
Q 017633 176 LLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLG--KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM---------YQA 238 (368)
Q Consensus 176 ~li~De~~~~~~~g~~~~~~~~~~~~di--~s~s--K~~~~G~~iG~v~~~-~~~~~~~~~---~~~~---------~~~ 238 (368)
++|+|++|+- |..+.....+...|+ .|++ |.+++| +.|+++.+ +++.+.++. .+.. ..+
T Consensus 135 ~li~D~a~~~---g~~~~~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (352)
T cd00616 135 PVIEDAAQAL---GATYKGRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILG 210 (352)
T ss_pred eEEEECCCCC---CCeECCEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceee
Confidence 9999999962 111111112222344 4444 988543 56777664 566554431 1110 111
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEEEEeecCCCcccchhcc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
.++..+++.++.+...++.+ +.+.++.+++.+++++.|.+.. ......... ....++.+.+...
T Consensus 211 ~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------- 277 (352)
T cd00616 211 YNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPE---------- 277 (352)
T ss_pred eccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCc----------
Confidence 23345667666666555544 3455666777777777776531 111110100 1223444443210
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCC---------------------------cccc--ccCCCHHHHHHHHHHHH
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFE---------------------------AGFT--SLAHSSDDIQHTITAAE 362 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~---------------------------~~~~--~~~~~~~~i~~~~~~l~ 362 (368)
...+..++.+.|.++||.++....+ .+++ ....+++|+++++++|+
T Consensus 278 -~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 278 -AGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred -CCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 0234578999999999977643211 1233 35679999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-17 Score=150.10 Aligned_cols=292 Identities=15% Similarity=0.101 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHH-------HhcCCceEEEEcCCCCCCchhhhhhcCCCccccCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-------AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 105 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~-------~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (368)
....++++.++++++. +.+++++||++|+..++..+. ...+++.||+.+.+|.+........ |........
T Consensus 63 ~~~~~fe~~lA~~~g~-~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~-G~~pv~vdv 140 (438)
T PRK15407 63 RFNDAFEKKLAEFLGV-RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN-GLVPVFVDV 140 (438)
T ss_pred hhHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc-CCEEEEEec
Confidence 3467899999998863 478899999999999997653 2356789999998887765444433 332211111
Q ss_pred CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc
Q 017633 106 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 185 (368)
....... |++++++.++ ++++++++.+.. |...+ +++|.++|++||++||+|++|+-
T Consensus 141 d~~~~~i-------------d~~~le~~i~---~~tkaVi~~~~~---G~p~d----l~~I~~la~~~gi~vIeDaa~a~ 197 (438)
T PRK15407 141 ELPTYNI-------------DASLLEAAVS---PKTKAIMIAHTL---GNPFD----LAAVKAFCDKHNLWLIEDNCDAL 197 (438)
T ss_pred CCCcCCc-------------CHHHHHHHcC---cCCeEEEEeCCC---CChhh----HHHHHHHHHHCCCEEEEECccch
Confidence 1111111 7999999887 467888887654 33344 99999999999999999999952
Q ss_pred hhcccCccccccCCCcchhhhh----hhccCCccceeeeeh-HHHHHHhc---CCCCc----------------------
Q 017633 186 FRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVA---PAGPM---------------------- 235 (368)
Q Consensus 186 ~~~g~~~~~~~~~~~~di~s~s----K~~~~G~~iG~v~~~-~~~~~~~~---~~~~~---------------------- 235 (368)
|..+.-...|..-|+.+|| |.+++|- .|+++.+ +++.+.++ ..+..
T Consensus 198 ---G~~~~g~~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK15407 198 ---GSTYDGRMTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGEL 273 (438)
T ss_pred ---hhhcCCeeeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccc
Confidence 2111111222222554444 7777554 4788775 44544322 11100
Q ss_pred -----------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc---eEEEE
Q 017633 236 -----------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFF 301 (368)
Q Consensus 236 -----------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~ 301 (368)
..+..+..+.+.++.++..++.+ ++..++.+++.+++.+.|.+.......+....+... .+.+.
T Consensus 274 ~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~ 351 (438)
T PRK15407 274 PFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPIT 351 (438)
T ss_pred cccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEE
Confidence 12345567888888888888866 445667777777777777543100101111111111 22222
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-C--------------c-------------ccc--ccCCCH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E--------------A-------------GFT--SLAHSS 351 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~--------------~-------------~~~--~~~~~~ 351 (368)
+... .+....++.+.|.++||..+.... + . +++ ...+++
T Consensus 352 ~~~~-----------~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~ 420 (438)
T PRK15407 352 VKED-----------AGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTE 420 (438)
T ss_pred ECCc-----------CCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCH
Confidence 2110 112357899999999997653211 0 0 112 245689
Q ss_pred HHHHHHHHHHHHHHh
Q 017633 352 DDIQHTITAAEKVLR 366 (368)
Q Consensus 352 ~~i~~~~~~l~~~l~ 366 (368)
+|+++.++.|++++.
T Consensus 421 ~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 421 EMLDYVIEKIEEFFG 435 (438)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998864
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=154.13 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=142.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...+|++.++++++....+. ++||++|+..++..+ ..++|+|++.++.|.+.........
T Consensus 58 ~~~p~~~~Le~~lA~~~g~~~~i~-~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~t~~~~~~~~------------- 121 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGGAYGRA-FSSGMAATDCLLRAV--LRPGDHIVIPNDAYGGTFRLIDKVF------------- 121 (388)
T ss_pred CCCccHHHHHHHHHHHhCCCceEE-eCCHHHHHHHHHHHH--hCCCCEEEEcCCCchHHHHHHHHhC-------------
Confidence 355678899999999987544444 457999999999766 3577899998888875432221111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++..|++++++.++ +++++++++..+|++|...+ +++|+++|++||+++|+|++|+.....
T Consensus 122 ---~~~gi~~~~~d~~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~~~~ 191 (388)
T PRK07811 122 ---TRWGVEYTPVDLSDLDAVRAAIT---PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASPYLQ 191 (388)
T ss_pred ---cCCCeEEEEeCCCCHHHHHHhcC---cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 11122334444458999999987 46788888877777787777 999999999999999999999632111
Q ss_pred cCccccccCCCcchhhhhhhccC-C-ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.. . .++.+..+.|++|.++| | .+.||++++ +++.+.+.. .........++..+..++..++.+ +...++
T Consensus 192 ~p--~-~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~ 263 (388)
T PRK07811 192 QP--L-ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF---LQNGAGAVPGPFDAYLTLRGLKTL--AVRMDR 263 (388)
T ss_pred Cc--h-hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 11 1 12333334578899985 3 567988774 566565542 111222244566665555555533 334566
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIIDA 281 (368)
Q Consensus 267 ~~~~~~~l~~~l~~~ 281 (368)
..++.+.+.+.|++.
T Consensus 264 ~~~na~~la~~L~~~ 278 (388)
T PRK07811 264 HSENAEAVAEFLAGH 278 (388)
T ss_pred HHHHHHHHHHHHHhC
Confidence 667777777777653
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=149.01 Aligned_cols=281 Identities=18% Similarity=0.187 Sum_probs=160.4
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhh----cCCCccccCCCCCCC
Q 017633 36 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGLPDSPG 110 (368)
Q Consensus 36 ~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 110 (368)
.++.++++++++ +.+++.+++||+++++.++... ...++++|++.++.| ......+.. .|.++....+... .
T Consensus 115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~-~~~~g~~Vlv~~~~~-~~~~~~~~~~~~~~G~~~~~v~~~~~-~ 191 (447)
T PRK00451 115 FEYQTMICELTGMDVANASMYDGATALAEAALMAV-RITKRKKVLVSGAVH-PEYREVLKTYLKGQGIEVVEVPYEDG-V 191 (447)
T ss_pred HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHH-HhcCCCEEEEeCccC-HHHHHHHHHHHHhCCcEEEEecCCCC-C
Confidence 344466788887 6678999999999888777544 224667888876544 433333322 2333332222111 1
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--ehhhhchhc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRL 188 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~--De~~~~~~~ 188 (368)
+ |+++++++++ ++++++++... +++|.+.+ +++|+++|+++|+++++ |.+..+.
T Consensus 192 ~--------------d~~~l~~~i~---~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~-- 247 (447)
T PRK00451 192 T--------------DLEALEAAVD---DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL-- 247 (447)
T ss_pred C--------------CHHHHHHhcC---CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--
Confidence 1 8999999887 46777777664 55788877 99999999999999998 5443322
Q ss_pred ccCccccccCCCcchh-----hhhhhcc-CCccceeeeehHHHHHHhcCC-------------------------CCccc
Q 017633 189 AYGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA-------------------------GPMYQ 237 (368)
Q Consensus 189 g~~~~~~~~~~~~di~-----s~sK~~~-~G~~iG~v~~~~~~~~~~~~~-------------------------~~~~~ 237 (368)
......++. |++ +|||.+. +|+++||+++++++++.+... +....
T Consensus 248 --~~~~~~~~~--D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
T PRK00451 248 --LKPPGEYGA--DIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKA 323 (447)
T ss_pred --CCCcccCCC--CEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccc
Confidence 111123333 443 5677776 788999999998888775210 00001
Q ss_pred cccCCCCHHHH-HHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 238 AGTLSGNPLAM-TAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 238 ~~t~~~~~~~~-~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
..+++.+...+ .++..+++.+.++ +..+++.+++++++++|++ .+..... ....+..+.+..
T Consensus 324 ~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~----~~g~~~~-~~~~~~~~~v~~--------- 389 (447)
T PRK00451 324 TSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAE----IGGVELF-DGPFFNEFVVRL--------- 389 (447)
T ss_pred cccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhh----cCCEEec-CCCeEEEEEEec---------
Confidence 11112222112 2333344444332 2344555555555555554 3211111 112121111110
Q ss_pred cccccHHHHHHHHHHHHcCeeecC----CC---CCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~----~~---~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
+ ....+++++|.++||...- .. ...+++ ....++++++++++.|++++
T Consensus 390 ---~-~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 390 ---P-KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ---C-CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 0 1247899999999887432 11 112333 33689999999999999875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=155.21 Aligned_cols=295 Identities=13% Similarity=0.023 Sum_probs=177.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.++++...+|++.++++.+ .+++++++||++|+..++..+ ..++|.||+.++.|.++....-...
T Consensus 61 r~~~pt~~~Le~~lA~l~g-~~~~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~~~------------ 125 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEG-GRHALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEWLA------------ 125 (394)
T ss_pred CCCCHHHHHHHHHHHHHhC-CCeEEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHHHH------------
Confidence 3566778899999999886 468999999999999999766 3578899999988876542111100
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
...+.++..++..+.+++++.++ +++++++++..+|+.+...+ +++|+++|+++|+++|+|++|..
T Consensus 126 ----~~~Gi~v~~vd~~~~~~l~~~i~---~~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a~--- 191 (394)
T PRK07050 126 ----RDFGITVRFYDPLIGAGIADLIQ---PNTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYSA--- 191 (394)
T ss_pred ----HhcCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCccc---
Confidence 01111223333335677888886 46788888877666665555 99999999999999999999952
Q ss_pred ccCccccccCCCcchhhhhhhccCC--ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~G--~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
+........|.+..+.+++|.++|| .+.|++++ ++++++.++. .......+.++..+..++..++.+ ....+
T Consensus 192 ~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~---~~~~~G~~~~~~~a~l~lr~l~tl--~~Rl~ 266 (394)
T PRK07050 192 GLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKL---ARMRLGIGVSADDCSLVLRGLPSL--QVRLA 266 (394)
T ss_pred ccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHcCCCcH--HHHHH
Confidence 2111111123322245789999854 56888766 6777776652 122223355666655544444322 12345
Q ss_pred HHHHHHHHHHHHHHHHHH--h--cC-Cc---------eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 266 YLNKITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~--~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+..+++..+.+.|.+... + ++ +. ....+.+.++.+.+.... ...+..++.+.|..-
T Consensus 267 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----------~~~~~~~~~~~l~~~ 336 (394)
T PRK07050 267 AHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY----------SPAQVDAFVEALELF 336 (394)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC----------CHHHHHHHHHcCCCC
Confidence 566666666666665310 0 00 00 011234555666653210 124456777777665
Q ss_pred CeeecCCCCCc-------------------cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 332 GVYFAPSQFEA-------------------GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 332 Gi~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.++-|+... ..+++.+.-|+.+.+++-|++++++
T Consensus 337 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE~~~dl~~dl~~al~~ 391 (394)
T PRK07050 337 AIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLEDEADLIADLEQALEA 391 (394)
T ss_pred eeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 55544443111 0124455567788888888888764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=153.50 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=147.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+ .+++++++||++|+..++..+ ..+++.|++..+.|.+...........
T Consensus 50 ~~npt~~~Le~~lA~leg-~e~ivvt~gg~~Ai~~~l~al--l~~Gd~Il~~~~~y~~~~~~~~~~~~~----------- 115 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES-GKGAVVTNCGTSALNLWVSAL--LGPDDLIVAPHDCYGGTYRLFNTRANK----------- 115 (388)
T ss_pred CCCchHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHHH--cCCCCEEEEcCCchHHHHHHHHHHHhc-----------
Confidence 466778999999999986 489999999999999999765 357788998888876543222111100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
.+.++..++..|+++++++++ +++++++++.++|++|.+.+ +++|.++|+++|+++|+||+|...
T Consensus 116 -----~gi~v~~vd~~d~e~l~~~i~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~--- 180 (388)
T PRK08861 116 -----GDFKVQFVDQSDAAALDAALA---KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTP--- 180 (388)
T ss_pred -----CCeEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc---
Confidence 011222333348899998887 46888888877777888888 999999999999999999999521
Q ss_pred cCccccccCCCcch--hhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
.. ........|+ .|.+|.++| +...|++++ ++++.+.++. .........++..+..++..++.+ .-..
T Consensus 181 ~~--~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~---~~~~~G~~~~p~~a~l~~rgl~Tl--~lR~ 253 (388)
T PRK08861 181 VL--QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW---WGNCIGATGTPFDSYMTLRGIRTL--GARM 253 (388)
T ss_pred cc--CCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH---HHhccCCCCChHHHHHHHhcCCCH--HHHH
Confidence 11 1112233454 577899985 367888876 4556555542 112223356777777776666654 3345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIIDA 281 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (368)
++..+++..+.+.|++.
T Consensus 254 ~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 254 RVHEESAQQILAYLQTQ 270 (388)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 67777788888877764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-17 Score=133.23 Aligned_cols=326 Identities=11% Similarity=0.059 Sum_probs=208.6
Q ss_pred ccCCCcHHHHHHHHHHHHcC-CCCCCCC--hhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 6 ILFPSYLQVLAALGETMKKG-TSFGAPC--LLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~-~~~~~~~--~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.||.+|-.+-.++.+++... ..+..|. ....++.+-+...|. ...-.++..+|+.+.+.|+-.. ..++|++++
T Consensus 20 L~gPGPsnl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~--lePgd~vLv 97 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL--LEPGDNVLV 97 (385)
T ss_pred eecCCCcCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh--cCCCCeEEE
Confidence 55665554445555544431 1222221 345566666666665 3567788889999999999544 247889999
Q ss_pred EcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..+.++...+-+... |..+.+...+.-..+ .++++.+.+.+| +++++++....+.+|...+-
T Consensus 98 ~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~--------------~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 98 VSTGTWGQRAADCARRYGAEVDVVEADIGQAV--------------PLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred EEechHHHHHHHHHHhhCceeeEEecCcccCc--------------cHHHHHHHHHhc--CCceEEEEecCccccccchH
Confidence 9888877665544442 333433322222222 699999999986 78888888888888877662
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC--c--
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--M-- 235 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~--~-- 235 (368)
++...++|++|+.++++|-+-+ -.|+.|.++.|+++.-.....|++++..+++-+..+++..++++.++. .
T Consensus 162 ---~~~~g~lc~k~~~lllVD~VaS--lggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~ 236 (385)
T KOG2862|consen 162 ---LAISGELCHKHEALLLVDTVAS--LGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSF 236 (385)
T ss_pred ---HHHHHHHhhcCCeEEEEechhh--cCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEE
Confidence 5677899999999999997765 244578899999865445566999965556668888888888875443 0
Q ss_pred cc----------------cccCCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 236 YQ----------------AGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 236 ~~----------------~~t~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
+. ....+++....++.+++++.+.++++ .++.++..+.++..+++.+.+.-..........
T Consensus 237 yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlpt 316 (385)
T KOG2862|consen 237 YFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPT 316 (385)
T ss_pred EEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCc
Confidence 00 12235566788888999988866553 344555555555555554322211101111111
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCCC----cccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~----~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+. .|...|+.+++.++.++ ++.+..+-.+ .+|+ ....+.+.++..++.|+.++++
T Consensus 317 vttv~-------------vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 317 VTTVK-------------VPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ceeee-------------cCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 11222 24667789999999998 5666554222 2343 3555889999999999998864
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=152.65 Aligned_cols=288 Identities=12% Similarity=0.095 Sum_probs=179.3
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 111 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (368)
.+...+|++.++++++. +++++++||+.|+..++.+ ..++|.|++.+..|.+.........
T Consensus 46 ~p~~~~le~~la~l~g~-~~~l~~~sG~~al~~~l~l---l~~Gd~Vl~~~~~y~~~~~~~~~~~--------------- 106 (378)
T TIGR01329 46 NPTRTALESLLAKLDKA-DRAFAFSSGMAALDVITRL---LNNGDEIIAGDDLYGGTDRLLTQVV--------------- 106 (378)
T ss_pred ChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHH---hCCCCEEEEcCCCchHHHHHHHHHH---------------
Confidence 45678999999998865 5667777899998876653 3577889988877765422111110
Q ss_pred CCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC
Q 017633 112 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~ 191 (368)
...+.++..++..|+++++++++ +++++++++...|++|.+.+ +++|+++|++||+++|+|++|.. +..
T Consensus 107 -~~~G~~v~~vd~~d~~~le~~i~---~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~---~~~ 175 (378)
T TIGR01329 107 -PRSGVVVVHVDTTDLDKVKAALG---PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMS---PLL 175 (378)
T ss_pred -HHcCcEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc---ccc
Confidence 01122344444458999999987 47889999988888888888 99999999999999999999842 111
Q ss_pred ccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 192 GAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 192 ~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
...-.++.+.-+.|.+|.++| +...|++++ ++.+.+.+.. .........++..+..+...++.+ ....++..
T Consensus 176 ~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~---~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~ 250 (378)
T TIGR01329 176 CNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF---LQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQ 250 (378)
T ss_pred CChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH---HHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHH
Confidence 111123333334578899985 367898877 4555555542 112122345566555544444333 33456677
Q ss_pred HHHHHHHHHHHHHHH--h--cC-Cce---------EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCee
Q 017633 269 KITGELTQGIIDAGK--K--AG-HAI---------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 334 (368)
Q Consensus 269 ~~~~~l~~~l~~~~~--~--~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 334 (368)
+++..+.+.|++.-. + ++ +.. ...+.++++.|.+. ......+|.+.|..-++.
T Consensus 251 ~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~-------------~~~~~~~~~~~L~~~~i~ 317 (378)
T TIGR01329 251 ENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG-------------SVALSKRLVEATKLFSIT 317 (378)
T ss_pred HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC-------------CHHHHHHHHHhCcCcccc
Confidence 777777777764211 0 00 000 11245567777762 223356888888655777
Q ss_pred ecCCCCCcc-------------------------ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 335 FAPSQFEAG-------------------------FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 335 ~~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++-|+.... .+++...-|+.+.+++-|++++++
T Consensus 318 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 318 VSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVT 375 (378)
T ss_pred cCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 766642211 123445557888889999988865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=147.73 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=153.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|+++++++.+ .+++++++||++|+..++.++ .++|+||+....|.+.. ..+..... ..
T Consensus 51 ~~~p~~~~le~~lA~leg-~~~~v~~~sG~aAi~~~l~~l---~~GD~VI~~~~~yg~~~-~~~~~~~~---------~~ 116 (364)
T PRK07269 51 TKNPTRAKLEETLAAIES-ADYALATSSGMSAIVLAFSVF---PVGSKVVAVRDLYGGSF-RWFNQQEK---------EG 116 (364)
T ss_pred CCCccHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHh---CCCCEEEEecCCcCchH-HHHHHHHh---------cC
Confidence 456778899999999984 568999999999999988533 57789999887776543 22221100 00
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
+ ..+... .|+++++++++ +++++++++..+|++|.+.+ +++|+++|+++|+++|+|++|.. +
T Consensus 117 ~------~~~~~~--~d~~~l~~~i~---~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~---~ 178 (364)
T PRK07269 117 R------FHFTYA--NTEEELIAAIE---EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS---P 178 (364)
T ss_pred c------EEEEec--CCHHHHHHhcC---cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc---c
Confidence 0 000111 17899999987 46888888888887888787 99999999999999999999841 1
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
. .....+...|+ .|++|.++| | .-.|++++ ++++.+.++. .........+++.++.++..++.+ +...
T Consensus 179 ~--~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~---~~~~~G~~~s~~~a~l~~~~L~tL--~~r~ 251 (364)
T PRK07269 179 I--YQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY---NLNTTGAVLSPFDSYLLMRGLKTL--SLRM 251 (364)
T ss_pred c--cCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHcCCCcH--HHHH
Confidence 1 11223444565 467799985 3 44677776 4666666652 111222456888888887777755 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC--ceEEeeccceEEEEee
Q 017633 265 EYLNKITGELTQGIIDAGKKAGH--AICGGYISGMFGFFFT 303 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 303 (368)
++..++++.+.+.|++ ++. ....++.+.++.|.+.
T Consensus 252 ~~~~~na~~~a~~L~~----~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 252 ERSTANAQEVVAFLKK----SPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHHHHHHHHHHHHh----CCCccEEeCCCcCcEEEEEEC
Confidence 5666666666666654 332 2234667888888873
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-15 Score=138.94 Aligned_cols=315 Identities=15% Similarity=0.091 Sum_probs=180.4
Q ss_pred CcHHHHHHHHHHHHc-C------CCCCCCChhHHHHHH----HHHhhCCC-CCeEEE---eCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKK-G------TSFGAPCLLENVLAE----MVISAVPS-IEMVRF---VNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~------~~~~~~~~~~~~l~~----~l~~~~~~-~~~v~~---~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|.+++++...+.+ . ..++..++...++.+ +..+.++. .+.+.+ .+||+.|+..++..+ ..+
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL--~~p 123 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL--LQP 123 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHh--CCC
Confidence 567788888877733 1 122223344444443 34455553 333333 378999999999766 357
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC------CHHHHHHHHHcCCCCeEEEEE-c
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIIL-E 147 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~~~~~~~~~~~~~~-~ 147 (368)
+|.|+..+-...|+........+...... .. ..+...+.++ |+++|++.+.+. +++.+++ +
T Consensus 124 gD~Il~~d~~~gGhl~H~~~~~g~~~s~~------~~----~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~ 191 (475)
T PLN03226 124 HDRIMGLDLPHGGHLSHGYQTDGKKISAT------SI----YFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGA 191 (475)
T ss_pred CCEEEECCCCcCcchhhhhhhcccccccc------eE----EEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEec
Confidence 78888855433333222222212111000 00 0000011111 899999999754 4555555 4
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcch--hhhhhhccCCccceeeeehH
Q 017633 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRR 223 (368)
Q Consensus 148 ~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~ 223 (368)
++ .+...+ +++|+++|++||++|++|++| .|+ ..+.. . ...+ ..|+ .|++|++.|. +.|++++++
T Consensus 192 S~---~s~~~D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~-~-~p~~-~~Div~~t~hK~L~GP-~Gg~I~~~~ 260 (475)
T PLN03226 192 SA---YPRDWD----YARMRKIADKVGALLMCDMAHISGLVAAQEA-A-SPFE-YCDVVTTTTHKSLRGP-RGGMIFFRK 260 (475)
T ss_pred Cc---CCCccC----HHHHHHHHHHcCCEEEEEchhhhCcccCCCC-C-CCCC-CCeEEEecCcccccCC-CceEEEEch
Confidence 43 445556 999999999999999999999 555 22111 1 1111 2455 4678999643 347777777
Q ss_pred HHH-----------HH--hcCCCCccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 224 DIM-----------EM--VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 224 ~~~-----------~~--~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
++. +. ......+.. ...++++...++..++++.+.+.+ +.+++.++.+++++.|.+. ++
T Consensus 261 ~~~~~~~~g~~~~~d~~~~i~~a~~~~-~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~----G~ 335 (475)
T PLN03226 261 GPKPPKGQGEGAVYDYEDKINFAVFPG-LQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK----GY 335 (475)
T ss_pred hhcccccCCCccHHHHHHHhccccCCc-cCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 543 22 111111111 222456677777778898886544 4666777777777766653 33
Q ss_pred ceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---------CCcccc------ccCCCH
Q 017633 288 AICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAHSS 351 (368)
Q Consensus 288 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---------~~~~~~------~~~~~~ 351 (368)
..... ...+++.+++.. ...+..++.+.|.+.||.+..+. .+.+++ +..+++
T Consensus 336 ~l~~~~t~~hi~lv~~~~------------~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~ 403 (475)
T PLN03226 336 KLVTGGTDNHLVLWDLRP------------LGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVE 403 (475)
T ss_pred EEEcCCCCCCEEEEEccC------------CCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCH
Confidence 32221 124566666532 22234678888888999887542 112332 467799
Q ss_pred HHHHHHHHHHHHHHh
Q 017633 352 DDIQHTITAAEKVLR 366 (368)
Q Consensus 352 ~~i~~~~~~l~~~l~ 366 (368)
+|++++.+.|.+++.
T Consensus 404 ~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 404 KDFEKVAEFLHRAVT 418 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-17 Score=145.30 Aligned_cols=215 Identities=15% Similarity=0.081 Sum_probs=139.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.++++...+|++.++++. + ++.++++||++|+..++... ..++|+|++.++.|++....+....
T Consensus 47 ry~~p~~~~Le~~lA~l~-~-~~~v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l------------ 110 (366)
T PRK07582 47 RASNPTWRALEAALGELE-G-AEALVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYL------------ 110 (366)
T ss_pred CCCCccHHHHHHHHHHHc-C-CCEEEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHH------------
Confidence 356778899999999998 4 45566678999999888654 3567899999888877543221110
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
...+.++..++.++.. + .+. +++++++++..+|++|.+.+ +++|+++|+++|+++++|++|... .
T Consensus 111 ----~~~G~~v~~v~~~~~~--~-~~~---~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~-~ 175 (366)
T PRK07582 111 ----APLGVTVREAPTAGMA--E-AAL---AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP-L 175 (366)
T ss_pred ----hcCeEEEEEECCCChH--H-Hhc---cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc-c
Confidence 0012233334333322 1 222 36777888777777777777 999999999999999999999421 1
Q ss_pred ccCccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
+.. ..+ ++.+.-+.|++|+++| |+++||+++ ++++++.+.. .........+++.+..+...++.+ +-..+
T Consensus 176 ~~~-p~~-~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~a~l~~r~l~tl--~~R~~ 248 (366)
T PRK07582 176 GQR-PLE-LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER---WRLLAGAIPGPFEAWLAHRSLGTL--GLRFA 248 (366)
T ss_pred ccC-chh-cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccccH--HHHHH
Confidence 111 111 2332234578899974 689999987 4677776652 122233356777777776666644 33446
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDA 281 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~ 281 (368)
+..+++..+.+.|++.
T Consensus 249 ~~~~na~~la~~L~~~ 264 (366)
T PRK07582 249 RQCANALAVAELLAGH 264 (366)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7778888888888764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=147.14 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=143.2
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++...+|++.++++++. +++++++||++|+..++... ..++|.|++..+.|++...........+
T Consensus 50 ~~np~~~~lE~~lA~l~g~-~~~l~~~sG~~Ai~~~l~~l--l~~GD~Vlv~~~~y~~~~~~~~~~~~~g---------- 116 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG-VDALAFNSGMAAISTLFFSL--LKAGDRVVLPMEAYGTTLRLLKSLEKFG---------- 116 (385)
T ss_pred CCCccHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHhhccC----------
Confidence 3456788999999999975 45677789999999998655 3568899998888876533222111111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-chhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~ 188 (368)
.++..+.. |+++++++++. .++++++++..+|++|.+.+ +++|+++|++||+++|+|++|+ ++.
T Consensus 117 -------~~v~~~~~-d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~- 181 (385)
T PRK08574 117 -------VKVVLAYP-STEDIIEAIKE--GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLL- 181 (385)
T ss_pred -------cEEEEECC-CHHHHHHhcCc--cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcccc-
Confidence 11111211 68889998873 26888888888888898888 9999999999999999999994 321
Q ss_pred ccCccccccCCCcchhhhhhhccC-Ccc-ceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~~-G~~-iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.....++.+..+.|++|.++| |-. .|++++ ++++.+.++.. ....+...++..++.++..++.+ +...+
T Consensus 182 ---~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~---~~~~g~~~~p~~a~l~l~~l~tL--~~R~~ 253 (385)
T PRK08574 182 ---YRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEW---RRRLGTIMQPFEAYLVLRGLKTL--EVRFE 253 (385)
T ss_pred ---CChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHH---HHhcCCCCCHHHHHHHHcccCcH--HHHHH
Confidence 111123443345688999985 433 465554 67776666521 12223356677777777776655 33456
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..+++.++.+.|++
T Consensus 254 ~~~~na~~la~~L~~ 268 (385)
T PRK08574 254 RQCRNAMAIAEFLSE 268 (385)
T ss_pred HHHHHHHHHHHHHHc
Confidence 666677777777764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=138.55 Aligned_cols=290 Identities=17% Similarity=0.145 Sum_probs=170.3
Q ss_pred hHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh---------cC--------------------CceEEEEcC
Q 017633 34 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---------TG--------------------RERIIKFEG 83 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~---------~~--------------------~~~vi~~~~ 83 (368)
.+.-..++..++|+ ....|. ..||+.|+..++..+... +| +|.|+..+.
T Consensus 96 ie~l~~~ra~~lf~a~~anvq-p~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l 174 (493)
T PRK13580 96 VEWEAAEHAKELFGAEHAYVQ-PHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSL 174 (493)
T ss_pred HHHHHHHHHHHHhCCCccccc-CCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecC
Confidence 33344444555665 344444 457999999998666432 11 688888866
Q ss_pred CCCCCchhhh--hhcCCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 84 CYHGHADPFL--VKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 84 ~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
...|+..... ...+.......+ ....+. -|++++++.++. .++.+++....+. +...+
T Consensus 175 ~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~-------------iD~d~l~~~~~~---~~plvii~g~S~~-~~~~d- 236 (493)
T PRK13580 175 DSGGHLTHGFRPNISGKMFHQRSYGVDPDTGL-------------LDYDEIAALARE---FKPLILVAGYSAY-PRRVN- 236 (493)
T ss_pred CCCCeeecCcccchhhheeeeEecccCcccCc-------------cCHHHHHHHHhh---cCCEEEEeCcccc-CCCcC-
Confidence 6655433221 001110100001 111111 189999999984 3444444444444 44667
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhh-hchhcccCccccccC--CCcch--hhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFG--VTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~-~~~~~g~~~~~~~~~--~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++||++|++|++| .|+..+.... ..++ ...|+ .|++|++.|. +.|++++++++.+.+....+
T Consensus 237 ---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~-~~~~~~~~~D~vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~P 311 (493)
T PRK13580 237 ---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFT-GDEDPVPHADIVTTTTHKTLRGP-RGGLVLAKKEYADAVDKGCP 311 (493)
T ss_pred ---HHHHHHHHHHcCCEEEEECchhhceeccccch-hhcCCCCCCcEEEeCChhhccCC-CeEEEEecHHHHHHHhhCCC
Confidence 999999999999999999999 5552122211 1111 13454 5788999543 46888889999888854333
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCCCccc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 310 (368)
+.+++ ..++ ..+++..++..+.+++ +.+++.++.+++++.|.+.+ +.... ....+++.+.+..
T Consensus 312 ~i~gg--~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G----~~vv~ggTdshIV~V~lg~------ 378 (493)
T PRK13580 312 LVLGG--PLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRG----ARLVTGGTDNHLVLIDVTS------ 378 (493)
T ss_pred cccCC--CccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcC----CCccCCCCCCCEEEEEeCC------
Confidence 33322 2333 4444334555554333 67888888888888887753 22111 1335677777742
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCCCc----------ccc--cc----CCCHHHHHHHHHHHHHHHh
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEA----------GFT--SL----AHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~----------~~~--~~----~~~~~~i~~~~~~l~~~l~ 366 (368)
.......+.+.|.+.||.+.....|. +|+ +. .++++|++++++.|.+++.
T Consensus 379 ------~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 379 ------FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred ------HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 11223567789999999998643221 233 22 4578999999999998875
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=149.89 Aligned_cols=218 Identities=19% Similarity=0.173 Sum_probs=144.5
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
+++...+|++.++++.+.. ..++++||++|+..++..+. .+++.|++....|++........ -
T Consensus 56 ~~pt~~~Le~~lA~l~g~~-~~l~~ssG~~Ai~~al~al~--~~Gd~Vl~~~~~Y~~t~~~~~~~-l------------- 118 (425)
T PRK06084 56 MNPTNDVLEQRVAALEGGV-GALAVASGMAAITYAIQTIA--EAGDNIVSVAKLYGGTYNLLAHT-L------------- 118 (425)
T ss_pred CCchHHHHHHHHHHHhCCC-ceeEehhHHHHHHHHHHHHh--CCCCEEEEeCCCcchHHHHHHHh-c-------------
Confidence 4566789999999998743 55677789999999997653 46788999988888643322211 0
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
...+.++..++..|+++++++++ +++++++++++++++|.+.+ +++|.++|++||+++|+|++|+.. .
T Consensus 119 --~~~gi~v~~~d~~d~e~le~ai~---~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~~---~ 186 (425)
T PRK06084 119 --PRIGIETRFAAHDDIAALEALID---ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVATP---V 186 (425)
T ss_pred --ccceeEEEEECCCCHHHHHHHhc---cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc---c
Confidence 01122333444458999999997 46788888888888898888 999999999999999999999621 1
Q ss_pred CccccccCCCcc--hhhhhhhccC-Cccceeeeeh-HHH-HHHh-------cC-------------CC----------Cc
Q 017633 191 GGAQEYFGVTPD--LTTLGKIIGG-GLPVGAYGGR-RDI-MEMV-------AP-------------AG----------PM 235 (368)
Q Consensus 191 ~~~~~~~~~~~d--i~s~sK~~~~-G~~iG~v~~~-~~~-~~~~-------~~-------------~~----------~~ 235 (368)
. .......+| +.|++|.++| |.++|.+++. +.. .... .. .+ ..
T Consensus 187 ~--~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (425)
T PRK06084 187 L--CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP 264 (425)
T ss_pred c--CChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHH
Confidence 1 112223345 4588999995 6788876553 321 0010 00 00 00
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
........++..++.++..++.+ +...++..+++..+.+.|++.
T Consensus 265 ~~~~g~~l~~~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L~~~ 308 (425)
T PRK06084 265 LRNMGAALSPFNAFLILQGLETL--ALRMERHTENALKVARYLQQH 308 (425)
T ss_pred HHhcCCCCCHHHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 11223356777777766666655 445677778888888887764
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-18 Score=154.29 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=117.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++++. +..++++||++|+..++..+. .+++.|++.++.|++.........
T Consensus 54 ~~~p~~~~le~~lA~l~g~-~~~v~~~sG~~Ai~~al~~l~--~~Gd~Vl~~~~~y~~t~~~~~~~~------------- 117 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEGG-VAALAVASGQAAITYAILNLA--QAGDNIVSSSYLYGGTYNLFKHTL------------- 117 (418)
T ss_pred CCChhHHHHHHHHHHHhCC-CeEEEEccHHHHHHHHHHHHh--CCCCEEEEECCCcHHHHHHHHHHH-------------
Confidence 4567788999999999864 567888899999999997653 467889998888876432211110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++||+++|+|++|.. +
T Consensus 118 ---~~~G~~v~~v~~~d~~~l~~~l~---~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~---~ 184 (418)
T TIGR01326 118 ---KRLGIEVRFVDPDDPEEFEKAID---ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFAT---P 184 (418)
T ss_pred ---HHcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCch---h
Confidence 01122333444448999999987 46788888888777888887 99999999999999999999952 1
Q ss_pred cCccccccCCCcch--hhhhhhccC-CccceeeeehH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-GLPVGAYGGRR 223 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G~~iG~v~~~~ 223 (368)
. ........+|+ .|+||.+++ |+|+|++++++
T Consensus 185 ~--~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 185 Y--LCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred h--cCCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 1 11122233454 489999995 89999987753
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=148.82 Aligned_cols=214 Identities=13% Similarity=0.112 Sum_probs=145.6
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 111 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (368)
++...+|++.++++.++ +.+++++||++|+..++... ..++|+||+.++.|.+.....-..
T Consensus 60 npt~~~Le~~iA~le~~-~~~~~~~sG~~Ai~~~l~al--l~~GD~Vvv~~~~Y~~t~~l~~~~---------------- 120 (394)
T PRK09028 60 TPTHFAFQAAIVELEGG-AGTALYPSGAAAISNALLSF--LKAGDHLLMVDSCYEPTRDLCDKI---------------- 120 (394)
T ss_pred CchHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHh----------------
Confidence 34567999999998754 46788899999999988655 357889999988886653221110
Q ss_pred CCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC
Q 017633 112 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 191 (368)
Q Consensus 112 ~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~ 191 (368)
....+.++..++..+.++++++++ +++++++++.++|++|.+.+ +++|+++|++||+++++|++|+. +.
T Consensus 121 l~~~Gi~v~~v~~~~~e~l~~~l~---~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~---p~- 189 (394)
T PRK09028 121 LKGFGIETTYYDPMIGEGIRELIR---PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS---PI- 189 (394)
T ss_pred hhhcceEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc---cc-
Confidence 001122333344446678888886 57899999988888887777 99999999999999999999952 21
Q ss_pred ccccccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 192 GAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 192 ~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
........+|+ .+.+|.++| | ...|+++.++++.+.+.. .........++..+..+...++.+ .-..++.
T Consensus 190 -~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~---~~~~~G~~~~p~~a~l~~rgl~TL--~lR~~~~ 263 (394)
T PRK09028 190 -NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLRE---HSYLMGQCTSPDDVYLAMRGLRTL--GVRLAQH 263 (394)
T ss_pred -cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHcccCcH--HHHHHHH
Confidence 12223344465 467899985 3 678877777766655542 111122356778887777777655 3345667
Q ss_pred HHHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIIDA 281 (368)
Q Consensus 268 ~~~~~~l~~~l~~~ 281 (368)
.+++..+.+.|++.
T Consensus 264 ~~na~~la~~L~~~ 277 (394)
T PRK09028 264 EKNALKVANWLATR 277 (394)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777777653
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.9e-17 Score=139.43 Aligned_cols=318 Identities=20% Similarity=0.216 Sum_probs=201.5
Q ss_pred CCceeccCCCc--HHHHHHHHHHHHcCC------CC-CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH
Q 017633 1 MPQLIILFPSY--LQVLAALGETMKKGT------SF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 71 (368)
Q Consensus 1 ~~~~~~~g~~~--~~v~~a~~~~~~~~~------~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~ 71 (368)
|++=|++|+.. -.-.++..+.+++.. .. -...+.+.++.+..++..+-.+.++|.. |-..+..-+-..
T Consensus 141 lgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~m-Gf~TNs~~~p~l-- 217 (519)
T KOG1357|consen 141 LGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSM-GFATNSMNIPSL-- 217 (519)
T ss_pred ecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEec-cccccccCccee--
Confidence 35667777632 223344444444421 11 2345788999999999998778888876 444444333222
Q ss_pred hcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---------C-CCCe
Q 017633 72 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---------N-KGEI 141 (368)
Q Consensus 72 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---------~-~~~~ 141 (368)
-++...|+.+.-.|++. ..-.+++++.+.-+.+||.++||+.+++ | +.+.
T Consensus 218 -~~~gsLIiSDelNHaSi-------------------~~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kk 277 (519)
T KOG1357|consen 218 -LGKGSLIISDELNHASL-------------------ITGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKK 277 (519)
T ss_pred -ecCCcceeeccccchhe-------------------eccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchh
Confidence 12333444455556553 2334456666777788899999999985 2 2345
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch-hcccCccccccCCCc---c--hhhhhhhccCCc
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTP---D--LTTLGKIIGGGL 214 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~-~~g~~~~~~~~~~~~---d--i~s~sK~~~~G~ 214 (368)
-.++++.++++.|.+.. +.++.++++||...|+.||+|+ |. ..+.....+.++.+| | +.+|.|++++
T Consensus 278 i~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga-- 351 (519)
T KOG1357|consen 278 ILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-- 351 (519)
T ss_pred eeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc--
Confidence 68889999999999999 8999999999999999999994 33 222345567777764 3 3589999984
Q ss_pred cceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-------CCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 215 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 215 ~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
..|++.+++++++.++.........+ +.+++.+...+.+++.+.- .+..+++.++..++|..+.+.+ +
T Consensus 352 ~GGyiagsk~lid~lrt~s~~~~yat-~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g----f 426 (519)
T KOG1357|consen 352 AGGYIAGSKELIDYLRTPSPSALYAT-SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG----F 426 (519)
T ss_pred ccceecCcHHHHhhhccCCCceeecc-cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc----E
Confidence 24678889999999885433333333 3444545555556666542 1245677777888877776642 2
Q ss_pred ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc---------cccccCCCHHHHHHHH
Q 017633 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------GFTSLAHSSDDIQHTI 358 (368)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~---------~~~~~~~~~~~i~~~~ 358 (368)
...-....+.+.+.+-. +.....+.+.|+++++.+...+.|. ++.+..++.|+++.++
T Consensus 427 ivyG~~dSpVvplll~~-------------~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l 493 (519)
T KOG1357|consen 427 IVYGNNDSPVVPLLLYG-------------PAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRAL 493 (519)
T ss_pred EEecCCCCCcceeeecC-------------cccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHH
Confidence 21111112222222211 1123567888999977766655443 3457888999999999
Q ss_pred HHHHHHH
Q 017633 359 TAAEKVL 365 (368)
Q Consensus 359 ~~l~~~l 365 (368)
+.+.++-
T Consensus 494 ~~i~~~g 500 (519)
T KOG1357|consen 494 EVIDRVG 500 (519)
T ss_pred HHHhhhc
Confidence 9988763
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-16 Score=151.66 Aligned_cols=301 Identities=14% Similarity=0.140 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChH----HHHHHHHHHHHHhcC--CceEEEEcCCCCCCchhhhhhcCCCccccCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGT----EACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLP 106 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt----~a~~~al~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (368)
+...++++.++++++- +.|.|+++++ +++..+++.....++ .+++++.+.+-|++........|.++......
T Consensus 568 ~~~~~~r~~la~i~g~-~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d 646 (993)
T PLN02414 568 EMFEDLGDLLCEITGF-DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTD 646 (993)
T ss_pred HHHHHHHHHHHHHhCC-CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccC
Confidence 3556888888888854 8999999988 788888865533212 23467777889998887777666655443332
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 186 (368)
.++.. |+++|+++++.+.++++++++...++.+|...+ +++|+++|+++|+++++|-++.
T Consensus 647 -~~G~v-------------Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-- 706 (993)
T PLN02414 647 -AKGNI-------------NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM-- 706 (993)
T ss_pred -CCCCc-------------CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH--
Confidence 22222 899999999865457888888777777777777 9999999999999999999984
Q ss_pred hcccCccccccCCCcchhhh--hhhcc-----CCccceeeeehHHHHHHhcCCC--C----c---cc--cccCC----CC
Q 017633 187 RLAYGGAQEYFGVTPDLTTL--GKIIG-----GGLPVGAYGGRRDIMEMVAPAG--P----M---YQ--AGTLS----GN 244 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~~iG~v~~~~~~~~~~~~~~--~----~---~~--~~t~~----~~ 244 (368)
.+-......-....|++.+ -|+|+ ||..+|++.+++++...+-... . . .. .+|.. ++
T Consensus 707 -~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~ 785 (993)
T PLN02414 707 -NAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGS 785 (993)
T ss_pred -HhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhh
Confidence 1111111212334577665 48776 3567999999998887765321 0 0 10 12212 22
Q ss_pred HHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc---eEEEEeecCCCcccchhccccc
Q 017633 245 PLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.+.+..+..-++.+..+++ .++...++.+++++|.+. ++..... ..+. -+.+.+.. .+ ...+
T Consensus 786 al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~~~-~~~~~~hEfv~~~~~--l~------~~~g 853 (993)
T PLN02414 786 ALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLFRG-KNGTCAHEFIIDLRP--FK------NTAG 853 (993)
T ss_pred HHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCccccC-CCCCeeeeEEEeccc--cc------cccC
Confidence 2444455555566655666 666777888888888773 2221111 1111 11222210 00 0011
Q ss_pred HHHHHHHHHHHHcCeeecCCCCC-----ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFE-----AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
....+++++|.+.||.......+ .+.+.-..+++|+++++++|+++..+
T Consensus 854 ~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e 907 (993)
T PLN02414 854 IEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE 907 (993)
T ss_pred CCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 33478999999999887643222 12356777999999999999988754
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-16 Score=141.14 Aligned_cols=311 Identities=16% Similarity=0.085 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
++-.+++.+.+.... + .......++++.++++++.. +.++++||++|+..++..+ ...++|.|++.+.+|.+....
T Consensus 10 ~~~~~~v~~~~~~~~-~-~~g~~~~~le~~la~~~g~~-~~v~~~sgt~al~~~l~al-~~~~Gd~Viv~~~~~~~~~~~ 85 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF-L-TQGPTVPAFEEALAEYVGAK-YAVAFNSATSALHIACLAL-GVGPGDRVWTTPITFVATANC 85 (380)
T ss_pred HHHHHHHHHHHhcCC-c-cCChhHHHHHHHHHHHHCCC-eEEEEcCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHHHH
Confidence 345777777776532 2 23455788999999998753 4455668999999999755 234678899988888765433
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 170 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~ 170 (368)
....|..+............ |++++++.+++.+ ++++++++.. .+|...+ +++|.++|
T Consensus 86 -~~~~G~~~~~~~~~~~~~~~-------------d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~~l~ 144 (380)
T TIGR03588 86 -ALYCGAKVDFVDIDPDTGNI-------------DEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIAALA 144 (380)
T ss_pred -HHHcCCEEEEEecCCCcCCc-------------CHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHHHHH
Confidence 33334333222221111111 8999999997421 2566666432 2466666 99999999
Q ss_pred HHhCCEEEEehhhhchhcccCccccccCC--Ccchh--hhh--hhccCCccceeeee-hHHHHHHhcC---CCCc-----
Q 017633 171 KENGALLIFDEVMTGFRLAYGGAQEYFGV--TPDLT--TLG--KIIGGGLPVGAYGG-RRDIMEMVAP---AGPM----- 235 (368)
Q Consensus 171 ~~~~~~li~De~~~~~~~g~~~~~~~~~~--~~di~--s~s--K~~~~G~~iG~v~~-~~~~~~~~~~---~~~~----- 235 (368)
++||++||+|++|+. |..+....++. .-|+. |++ |.++.| ..|+++. ++++.+.++. .+..
T Consensus 145 ~~~~~~lI~D~a~a~---g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~ 220 (380)
T TIGR03588 145 KKHGLKIIEDASHAL---GAEYGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLL 220 (380)
T ss_pred HHcCCEEEEECCCcc---cCccCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCccc
Confidence 999999999999962 21111122333 23554 443 888754 4566655 4666554431 1100
Q ss_pred --------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee---ccceE
Q 017633 236 --------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY---ISGMF 298 (368)
Q Consensus 236 --------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~ 298 (368)
..+..+..+.+.++.++..++.+ +...++.+++.+++.+.|.++. .........+ .....
T Consensus 221 ~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~ 297 (380)
T TIGR03588 221 FEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLP-YFTPLTIPLGSKSAWHLY 297 (380)
T ss_pred ccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCEeEEEEE
Confidence 01123445667767666666654 4456666777777777776531 1110000000 01111
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------------------------ccc--ccCCCH
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------------------------GFT--SLAHSS 351 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------------------------~~~--~~~~~~ 351 (368)
.+.+... ......++.+.|.++||.++....+. +++ ....++
T Consensus 298 ~i~~~~~-----------~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~ 366 (380)
T TIGR03588 298 PILLDQE-----------FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTL 366 (380)
T ss_pred EEEECCc-----------CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCH
Confidence 2222100 11235788999999999886432110 122 245699
Q ss_pred HHHHHHHHHHHHHH
Q 017633 352 DDIQHTITAAEKVL 365 (368)
Q Consensus 352 ~~i~~~~~~l~~~l 365 (368)
+|++++++.|++++
T Consensus 367 ~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 367 EQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=135.80 Aligned_cols=191 Identities=20% Similarity=0.216 Sum_probs=134.3
Q ss_pred ccCCCcHHHHHHHHHHHHcCC---CCC-CCC---hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh-cC-C
Q 017633 6 ILFPSYLQVLAALGETMKKGT---SFG-APC---LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-TG-R 75 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~---~~~-~~~---~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~-~~-~ 75 (368)
..|.-+|.|.+++.+++.... +.. +.. ...++.++.++++.+ ++++|+||+++||++.++++-.... .. .
T Consensus 51 at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~ 130 (428)
T KOG1549|consen 51 ATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKT 130 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccccc
Confidence 456678999999999887631 111 222 225678888999998 6777999999999999999654332 21 2
Q ss_pred c-eEEEEcCCCCCCch-hhhhhcCCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 76 E-RIIKFEGCYHGHAD-PFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 76 ~-~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+ .||... .-|.... ....+...++.+..+|. ..+.. |.+.+++.++ ++|+++.+..++++
T Consensus 131 ~k~iitl~-~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~-------------d~~~~~~~i~---~~T~lv~I~~Vnn~ 193 (428)
T KOG1549|consen 131 KKHIITLQ-TEHPCVLDSCRALQEEGLEVTYLPVEDSGLV-------------DISKLREAIR---SKTRLVSIMHVNNE 193 (428)
T ss_pred cceEEEec-ccCcchhHHHHHHHhcCeEEEEeccCccccc-------------cHHHHHHhcC---CCceEEEEEecccC
Confidence 3 455555 4555443 33333333332222221 22222 7899999998 68999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccC-CccceeeeehH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGG-GLPVGAYGGRR 223 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~-G~~iG~v~~~~ 223 (368)
.|.+.| +++|..+|+++++.+++|.+|+ .|.. ..+--++.+|++++| |.+|+ | +|++.+++
T Consensus 194 ~gv~~P----v~EI~~icr~~~v~v~~DaAQa---vG~i-~vDV~eln~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 194 IGVLQP----VKEIVKICREEGVQVHVDAAQA---VGKI-PVDVQELNADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred cccccc----HHHHHHHhCcCCcEEEeehhhh---cCCc-cccHHHcCchheeeecccccCCCc--ceEEEEcc
Confidence 999999 9999999999999999999996 4442 334445566888877 98884 4 99988875
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=147.02 Aligned_cols=221 Identities=15% Similarity=0.117 Sum_probs=141.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|.+.++++.+. +..++++||+.|+..++..+ ..++|.|++..+.|++........
T Consensus 61 ~~~p~~~~Le~~lA~leg~-~~al~~~sG~~Ai~~al~~l--l~~GD~Vlv~~~~y~~t~~~~~~~-------------- 123 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG-IGALAVSSGQAAITYSILNI--ASAGDEIVSSSSLYGGTYNLFAHT-------------- 123 (431)
T ss_pred CCCchHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEccCchhhHHHHHHHH--------------
Confidence 3456688999999999864 56778889999999998655 356788999888777653322111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.+++.++..|+++++++++ +++++++++..+|++|.+.+ +++|+++|+++|+++|+|++++. +
T Consensus 124 --~~~~Gv~v~~vd~~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~---~ 191 (431)
T PRK08248 124 --LPKLGITVKFVDPSDPENFEAAIT---DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS---P 191 (431)
T ss_pred --HHhCCEEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc---c
Confidence 011223344455558999999987 46788888877777888888 99999999999999999999851 1
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccceeeee-hHHH-H----------------------HHhc-------CCCCccc
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG-RRDI-M----------------------EMVA-------PAGPMYQ 237 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~-~~~~-~----------------------~~~~-------~~~~~~~ 237 (368)
.......++.+.-+.|++|.++| |.++|++++ +.+. . +.+. .......
T Consensus 192 ~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (431)
T PRK08248 192 YLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLR 271 (431)
T ss_pred ccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHH
Confidence 11111123443334578899994 678888755 3321 0 0000 0000001
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
......++..+......++.+ +-..++..+++..+.+.|++.
T Consensus 272 ~~G~~l~p~~a~l~~rgl~tl--~~R~~~~~~nA~~la~~L~~~ 313 (431)
T PRK08248 272 DLGAALSPFNSFLLLQGLETL--HLRMERHSENALAVAKFLEEH 313 (431)
T ss_pred hcCCCCCHHHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 112345666666666555544 334567777777777777653
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-15 Score=140.54 Aligned_cols=321 Identities=17% Similarity=0.172 Sum_probs=178.9
Q ss_pred CCcHHHHHHHHHHH--HcCCCCCC--CC----hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH--hcC----
Q 017633 9 PSYLQVLAALGETM--KKGTSFGA--PC----LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA--FTG---- 74 (368)
Q Consensus 9 ~~~~~v~~a~~~~~--~~~~~~~~--~~----~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~--~~~---- 74 (368)
+.+|.+++++.+.. .+.+.|.. .. +...++.++++++++-....++.++|+.+...++.+++. ..+
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~ 160 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTK 160 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCC
Confidence 46778888887752 22222211 11 456677777888776224455555676666554433222 122
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+++|++.++.| ..+...+...|..+....... .+.. |+++|++.++ ++++++++...+ ++|
T Consensus 161 ~~~Vlv~~~~h-p~~~~~~~~~G~~vv~v~~~~-~~~~-------------D~e~L~~~i~---~~t~~V~v~~Pn-~tG 221 (481)
T PRK04366 161 RTEVIVPDSAH-GTNPASAAMAGFKVVEIPSNE-DGLV-------------DLEALKAAVG---EDTAALMLTNPN-TLG 221 (481)
T ss_pred CCEEEEcCCcc-HhHHHHHHHcCCEEEEeecCC-CCCc-------------CHHHHHhhcc---cCCeEEEEeCCC-Ccc
Confidence 23777776655 444444555454443322211 1111 8999999886 356666664433 456
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhh--hhhhcc-----CCccceeeeehHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIG-----GGLPVGAYGGRRDIME 227 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s--~sK~~~-----~G~~iG~v~~~~~~~~ 227 (368)
.+ ..+ +++|+++|+++|+++++|+++.--..+.. ....+| .|+++ ..|+|+ ||..+|++.+++++.+
T Consensus 222 ~~--~~d-l~eI~~~a~~~gal~iVD~a~~~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~ 295 (481)
T PRK04366 222 LF--ERN-ILEIAEIVHEAGGLLYYDGANLNAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAP 295 (481)
T ss_pred cc--chH-HHHHHHHHHHcCCEEEEEecChhhhcccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHh
Confidence 44 212 99999999999999999999841111211 222334 46654 459987 3456788888888887
Q ss_pred HhcCC-----C-Ccc----------ccccCCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 228 MVAPA-----G-PMY----------QAGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 228 ~~~~~-----~-~~~----------~~~t~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
.+... + .+. ..-.++.+.+.+.++...+..+..+++ .++...+.++++++|+++ ....
T Consensus 296 ~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~---~~~~ 372 (481)
T PRK04366 296 FLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI---YDLP 372 (481)
T ss_pred hCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---Cccc
Confidence 76421 0 000 011112233445555555555544544 345566788888888775 2211
Q ss_pred eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-----cc--ccccCCCHHHHHHHHHHH
Q 017633 289 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-----AG--FTSLAHSSDDIQHTITAA 361 (368)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~~--~~~~~~~~~~i~~~~~~l 361 (368)
. .. ..+..+.+....+ . ..+....++.+.|.++||.+.....+ .+ ++....+++|++++++.|
T Consensus 373 ~--~~-~~~~~~~~~~~~~---~----~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l 442 (481)
T PRK04366 373 Y--DR-PCMHEFVLSGKKL---K----ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAM 442 (481)
T ss_pred C--CC-CeeEEEEEECccc---c----ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHH
Confidence 1 11 1111111111000 0 01223578999999999998733221 22 345677999999999999
Q ss_pred HHHHhh
Q 017633 362 EKVLRQ 367 (368)
Q Consensus 362 ~~~l~~ 367 (368)
+++.++
T Consensus 443 ~~i~~~ 448 (481)
T PRK04366 443 KQIAEE 448 (481)
T ss_pred HHHHHH
Confidence 988754
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=146.37 Aligned_cols=218 Identities=18% Similarity=0.183 Sum_probs=142.7
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
+.+...+|++.++++.+.. ..++++||+.|+..++..+ ..+++.||+....|++........
T Consensus 61 ~~p~~~~le~~lA~l~g~~-~al~~~SG~~Ai~~al~al--l~pGd~VIv~~~~y~~t~~~~~~~--------------- 122 (427)
T PRK05994 61 TNPTNAVLEERVAALEGGT-AALAVASGHAAQFLVFHTL--LQPGDEFIAARKLYGGSINQFGHA--------------- 122 (427)
T ss_pred CCccHHHHHHHHHHHhCCC-cEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCcchhHHHHHHHH---------------
Confidence 3456788999999998754 4777789999999998766 356789999998888753221110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
....+..++.++..|+++++++++ ++++++++++.+|++|.+.+ +++|.++|++||+++|+|++|+. +.
T Consensus 123 -~~~~G~~v~~vd~~d~~~l~~ai~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~---~~ 191 (427)
T PRK05994 123 -FKSFGWQVRWADADDPASFERAIT---PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS---PY 191 (427)
T ss_pred -HHhcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc---cc
Confidence 001122334444458999999987 47889999888888898888 99999999999999999999952 11
Q ss_pred CccccccCCCcchh--hhhhhccC-Cccceeeee-hHH-----------------------HHHHhc-------CCCCcc
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG-RRD-----------------------IMEMVA-------PAGPMY 236 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~-G~~iG~v~~-~~~-----------------------~~~~~~-------~~~~~~ 236 (368)
........+|++ |++|.++| |-.+|.+++ ... +.+.+. ......
T Consensus 192 --~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (427)
T PRK05994 192 --LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGL 269 (427)
T ss_pred --cCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHH
Confidence 122233455654 67899984 334554433 111 111100 000001
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
.......++..++.++..++.+ +.+.++..+++..+.+.|++.
T Consensus 270 ~~~G~~~~~~~A~l~~~~l~tL--~~r~~~~~~~a~~la~~L~~~ 312 (427)
T PRK05994 270 RDLGPAISPFNAFLILTGIETL--PLRMQRHSDNALAVAEWLKGH 312 (427)
T ss_pred HhcCCCCCHHHHHHHHcCcccH--HHHHHHHHHHHHHHHHHHHhC
Confidence 1122246777777777777655 445677777888888887654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=139.79 Aligned_cols=317 Identities=15% Similarity=0.082 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHHHcCC-------CCCCCChhHHH----HHHHHHhhCC-CCCeEEEe---CChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKGT-------SFGAPCLLENV----LAEMVISAVP-SIEMVRFV---NSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~-------~~~~~~~~~~~----l~~~l~~~~~-~~~~v~~~---~~gt~a~~~al~~~~~~~~ 74 (368)
-+|.+++++...+.+.. .+....+.... .++.+++.++ +.+.+.++ +||++++..++... ..+
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al--~~~ 123 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL--LQP 123 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh--cCC
Confidence 46778888877765521 11111222222 4557888887 55666566 78999999988666 345
Q ss_pred CceEEEEcCCCCCCchhhh-hhcCCCccccCCCCCCCCCCCCCCcccccC-----CCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 75 RERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAP-----FNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
++.|++.+.. |+...... .....+... . ....++..++ .-|++++++.+++. +++.+++.
T Consensus 124 gd~Ii~~~~e-hg~~l~~~~~l~~~~~~~------~----~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~- 189 (452)
T PTZ00094 124 HDRIMGLDLP-SGGHLTHGFYTAKKKVSA------T----SIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG- 189 (452)
T ss_pred CCEEEecccc-cCCccccccccccccccc------c----eeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe-
Confidence 6778775443 44322211 110000000 0 0000000111 11899999999753 34445542
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-chhcccCccccccCCCcchhhh--hhhccCCccceeeeehHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~g~~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~~~~ 225 (368)
.++.|...+ +++|.++|+++|+++++|++|+ |...+........ ..|++++ .|++.|.. .|++++++++
T Consensus 190 -~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~--~~D~l~~S~hK~l~GP~-Gg~l~~~~~~ 261 (452)
T PTZ00094 190 -ASAYPRDID----YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP--YADVVTTTTHKSLRGPR-SGLIFYRKKV 261 (452)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC--CCcEEEcCCccCCCCCC-ceEEEEeccc
Confidence 345677888 9999999999999999999994 3311111111111 3576654 59997544 4777776654
Q ss_pred HHHhcCC-C-CccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccceEE
Q 017633 226 MEMVAPA-G-PMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFG 299 (368)
Q Consensus 226 ~~~~~~~-~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 299 (368)
.+.+... . ..+-...-++++...++..++++.+... .+.+++.++.+++++.|.+. +......+ ......
T Consensus 262 ~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~----g~~v~~~~~~~~~~~ 337 (452)
T PTZ00094 262 KPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR----GYDLVTGGTDNHLVL 337 (452)
T ss_pred chHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC----CcEEecCCCCCceEe
Confidence 3332210 0 0100111145667777788888887543 35566777777777776552 32221111 112233
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---------CCcccc--c----cCCCHHHHHHHHHHHHHH
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT--S----LAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---------~~~~~~--~----~~~~~~~i~~~~~~l~~~ 364 (368)
+.+.. ...+..++...|.++||.+...+ .+.+|+ + ..++++|++++++.|.++
T Consensus 338 v~~~~------------~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~ 405 (452)
T PTZ00094 338 VDLRP------------FGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRA 405 (452)
T ss_pred ecCCc------------CCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33321 12234677888877899995321 122343 2 233599999999999988
Q ss_pred Hh
Q 017633 365 LR 366 (368)
Q Consensus 365 l~ 366 (368)
+.
T Consensus 406 ~~ 407 (452)
T PTZ00094 406 VK 407 (452)
T ss_pred HH
Confidence 75
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-15 Score=134.00 Aligned_cols=289 Identities=16% Similarity=0.096 Sum_probs=179.2
Q ss_pred ChhHHHHHHHHHhhCC-CCC--eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVP-SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~~~--~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.+.+.+..++++++++ +.+ ..++|+|||+++..++..++...+++. |+.+..-|.+...+....+.+........
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~-ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~- 141 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGT-LYYSKDTHYSVSKIARLLRIKSRVITSLP- 141 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcE-EEeCCCceehHHHHHHHcCCCCceeccCC-
Confidence 3567788899999987 333 358899999999999887765544444 45555666666655555544332221111
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CEEEEehhhhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEVMTG 185 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~---~~li~De~~~~ 185 (368)
.+.. |+++|++.+++...++.++++...++++|.+.| +++|+++|++|| +++++|.+|.+
T Consensus 142 ~g~i-------------d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 142 NGEI-------------DYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred CCcC-------------cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence 1111 899999999864345888888888888999999 999999999998 69999999976
Q ss_pred h-hc--ccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCCCccc--cccC--CCCHHHHHHHHHHHH
Q 017633 186 F-RL--AYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTL--SGNPLAMTAGIHTLK 256 (368)
Q Consensus 186 ~-~~--g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~~~~~--~~t~--~~~~~~~~a~~~~l~ 256 (368)
+ .. .....++... ..|.+++| |.+++..++|.++.+++..+.+.....+.. ..++ +.+..+..+..++++
T Consensus 205 ~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~ 283 (380)
T PRK02769 205 MILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIR 283 (380)
T ss_pred eeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHH
Confidence 4 10 0100111111 45777666 877767889999888776665542211111 1122 234456677778888
Q ss_pred HHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCe
Q 017633 257 RLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 333 (368)
Q Consensus 257 ~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 333 (368)
.+..++ ..++..++.+++.++|++ .+......+....+.|.. +. .++ . +|.
T Consensus 284 ~lg~~G~~~~~~~~~~la~~l~~~L~~----~g~~~~~~p~~~~v~f~~-------------~~----~~~----~-~~w 337 (380)
T PRK02769 284 SLGSKGLRQRVQHCLDMAQYAVDRLQA----NGIPAWRNPNSITVVFPC-------------PS----ERI----W-KKW 337 (380)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHh----CCCEEEcCCCceEEEEcC-------------CC----HHH----H-hCe
Confidence 776544 345566666666666654 343323333333333321 11 112 1 555
Q ss_pred eecCCCC-CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 334 YFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 334 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.+... -++++...++++.++++++.|...+.
T Consensus 338 ~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 338 HLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred eEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5554432 22344556788999999999987753
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=146.38 Aligned_cols=210 Identities=13% Similarity=0.156 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh---hhhcCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 108 (368)
++...+++++++++.+ .+..++++||+.++..++.+ ..++|.||+..+.|+++.... +...|.
T Consensus 132 npt~~aLE~~lA~leg-~e~ai~~~SG~aAi~~il~l---l~~GD~VI~~~~~y~~t~~ll~~~l~~~G~---------- 197 (464)
T PLN02509 132 NPTRDALESLLAKLDK-ADRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVVPRSGV---------- 197 (464)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEEeCcHHHHHHHHHHH---hCCCCEEEEcCCchhhHHHHHHHHHHHCCe----------
Confidence 4668889999999875 45667777899887655543 357889999888876643211 111122
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
++..++..|+++++++++ +++++++++.++|++|.+.+ +++|+++|++||+++|+|++|...
T Consensus 198 ---------~v~~vd~~d~e~l~~ai~---~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~~-- 259 (464)
T PLN02509 198 ---------VVKRVNTTNLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMSP-- 259 (464)
T ss_pred ---------EEEEeCCCCHHHHHHhCC---cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcccc--
Confidence 233334447899998886 46888988888888888776 999999999999999999999421
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCH
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 263 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~ 263 (368)
.. ....+...|+ .|++|.++| | .-.|+++++ +.+.+.+... ........++..++.++..++.+ +..
T Consensus 260 -~~--~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~---~~~~g~~l~p~~A~l~lr~L~tL--~~R 331 (464)
T PLN02509 260 -VL--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL---QNSEGSGLAPFDCWLCLRGIKTM--ALR 331 (464)
T ss_pred -cc--CChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHH---HHhcCCCcCHHHHHHHHhhhhhH--HHH
Confidence 11 1112233454 578899985 3 446677654 4444433211 01111235777888888888766 445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017633 264 YEYLNKITGELTQGIIDA 281 (368)
Q Consensus 264 ~~~~~~~~~~l~~~l~~~ 281 (368)
.++..++++++.+.|++.
T Consensus 332 ~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 332 IEKQQENARKIAMYLSSH 349 (464)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 677888888888888753
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=144.42 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=141.8
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh---hhhcCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 108 (368)
.+...+|++.++++.+.. ..+.++||+.|+..++..+ ..++|.||+.+..|.+..... +...|.
T Consensus 60 nPtv~~lE~~la~leg~~-~av~~~SG~aAi~~al~al--l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi---------- 126 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGV-GAVATASGQAAIMLAVLNI--CSSGDHLLCSSTVYGGTFNLFGVSLRKLGI---------- 126 (432)
T ss_pred CcHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHHHHHHHHHCCC----------
Confidence 567889999999998654 4677889999999999755 357889999998887754331 121222
Q ss_pred CCCCCCCCCcccccCCC-CHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchh
Q 017633 109 PGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 187 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 187 (368)
++..++.+ |+++++++++ +++++|+++...++.+.+.+ +++|+++|++||+++|+|+++.
T Consensus 127 ---------~v~~vd~~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~--- 187 (432)
T PRK06702 127 ---------DVTFFNPNLTADEIVALAN---DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA--- 187 (432)
T ss_pred ---------EEEEECCCCCHHHHHHhCC---cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC---
Confidence 22333332 8899999998 57889999987777788888 9999999999999999999984
Q ss_pred cccCccccccCCCcc--hhhhhhhccC-Cccce-eeeeh----------HHHHH-----------------H-h-cCCCC
Q 017633 188 LAYGGAQEYFGVTPD--LTTLGKIIGG-GLPVG-AYGGR----------RDIME-----------------M-V-APAGP 234 (368)
Q Consensus 188 ~g~~~~~~~~~~~~d--i~s~sK~~~~-G~~iG-~v~~~----------~~~~~-----------------~-~-~~~~~ 234 (368)
.....+.+....| +.|+||.++| +--+| .++.. ..+.+ . + +....
T Consensus 188 --tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (432)
T PRK06702 188 --TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ 265 (432)
T ss_pred --chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHH
Confidence 2233443444445 4588998874 22222 22211 11110 0 0 00000
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
.......+.++..+..++..++.+ +...++..+++..+.+.|++.
T Consensus 266 ~~~~~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 266 LLRDYGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 111233477888888888887755 345666777888887777764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=143.89 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=144.2
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++....|++.++.+.++.+.+ +++||++|+..++... ..++|.||+.++.|+++........
T Consensus 62 gnPt~~~Le~~la~le~~~~~v-~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l-------------- 124 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTI-LVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTML-------------- 124 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEE-EECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHH--------------
Confidence 4567788999999887655555 4556999999998655 3678999999988887543211110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
...+.++..++..+.++++++++ +++++++++.+.|+.+.+.+ +++|+++|+++|+++++|++|+.. .
T Consensus 125 --~~~Gi~v~~vd~~~~e~l~~al~---~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p---~ 192 (395)
T PRK05967 125 --KRLGVEVEYYDPEIGAGIAKLMR---PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP---L 192 (395)
T ss_pred --HhcCeEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc---e
Confidence 11122233333335677888887 46899999977777666666 999999999999999999999622 1
Q ss_pred CccccccCCCcchhhhhhhccC--CccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
......+|.+.-+.|.+|.++| ....|+++.++++++.+.. .........++..+...+..++.+ .-..++..
T Consensus 193 ~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~---~~~~~G~~~~p~da~l~~rgl~Tl--~lR~~~~~ 267 (395)
T PRK05967 193 YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLE---AHGTLGLCAGPDDTYQILRGLRTM--GIRLEHHR 267 (395)
T ss_pred ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHH---HHHHcCCCCCHHHHHHHHcCcccH--HHHHHHHH
Confidence 1112224443334578899985 3778877778776665541 111122246777777766666655 33456677
Q ss_pred HHHHHHHHHHHHH
Q 017633 269 KITGELTQGIIDA 281 (368)
Q Consensus 269 ~~~~~l~~~l~~~ 281 (368)
+++..+.+.|++.
T Consensus 268 ~na~~lA~~L~~h 280 (395)
T PRK05967 268 KSALEIARWLEGR 280 (395)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777763
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-15 Score=132.38 Aligned_cols=305 Identities=15% Similarity=0.053 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHcCCC-----CC---CCChhHHHHHHHHHhhCC-CCCeE--EEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 13 QVLAALGETMKKGTS-----FG---APCLLENVLAEMVISAVP-SIEMV--RFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 13 ~v~~a~~~~~~~~~~-----~~---~~~~~~~~l~~~l~~~~~-~~~~v--~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..++++.+.+.+... +. ...+.+.++.++++++++ +++.+ +||+|||+|+..++..++...++ .+++.
T Consensus 38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~-~~vi~ 116 (374)
T PLN03032 38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPD-GILYA 116 (374)
T ss_pred HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCC-cEEEe
Confidence 466777666654211 11 124678889999999997 44544 99999999999999887654333 46677
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+..-|.+...++...+.++...+.... +.. |+++|+++++++...+.++++...++++|.+.|
T Consensus 117 s~~~H~Sv~kaa~~lg~~~~~V~~d~~-g~i-------------d~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp--- 179 (374)
T PLN03032 117 SRESHYSVFKAARMYRMEAVKVPTLPS-GEI-------------DYDDLERALAKNRDKPAILNVNIGTTVKGAVDD--- 179 (374)
T ss_pred CCCceeHHHHHHHHcCCCCeEeeeCCC-CcC-------------cHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---
Confidence 778888777776665554433222111 111 899999999854335777778777778898888
Q ss_pred HHHHHHHHHHHhC-----CEEEEehhhhch-h--ccc--CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHh
Q 017633 162 FLNAIRRITKENG-----ALLIFDEVMTGF-R--LAY--GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 162 ~l~~i~~l~~~~~-----~~li~De~~~~~-~--~g~--~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~ 229 (368)
+++|+++|++|| +++++|.++.++ . ... .+.+ ....|.+++| |..+...++|.++.+++..+.+
T Consensus 180 -i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 180 -LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKAL 255 (374)
T ss_pred -HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhHhh
Confidence 999999999997 589999999654 1 110 1111 1235666666 7666578899998887766655
Q ss_pred cCCCCccc--cccCCCC--HHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 230 APAGPMYQ--AGTLSGN--PLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 230 ~~~~~~~~--~~t~~~~--~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
.....+.. ..|..++ ......+..+++.+..++ +.++..++++++.++|++. +......+....+.|..
T Consensus 256 ~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~~V~f~~ 331 (374)
T PLN03032 256 SQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSSTVVFER 331 (374)
T ss_pred ccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCceEEEEcC
Confidence 43222111 1223333 344566666777666544 4566667777777777663 43333333333333321
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-CccccccCCCHHHHHHHHHHHHHH
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
+. ... ..+|..+.+... -++++....+.+.++++++.|++.
T Consensus 332 -------------~~---~~~-----~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 332 -------------PM---DEA-----FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred -------------CC---cHh-----HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 11 011 224555544322 123334456789999999988753
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-15 Score=136.07 Aligned_cols=326 Identities=13% Similarity=-0.006 Sum_probs=193.2
Q ss_pred CCCcHHHHHHHHHHHHcCC----CCCCCChhHHHHHHHHHhhCC-C-C-CeEEE--eCChHHHHHHHHHHHHHh--c---
Q 017633 8 FPSYLQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-S-I-EMVRF--VNSGTEACMGVLRLARAF--T--- 73 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~-~-~-~~v~~--~~~gt~a~~~al~~~~~~--~--- 73 (368)
+...|++.+.+.+.+.... ..+...+..++..+++++.++ + . +++.+ |+|||+|+..++..++.. .
T Consensus 51 t~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 51 TWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999988886421 112233778888999999987 4 2 34544 799999999999665421 0
Q ss_pred --C---CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 74 --G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 74 --~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
+ ...+++....-|.+...+....+.++...+.....+.. |+++|+++++ +++.+|++..
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~v-------------d~~~L~~~i~---~~t~lV~~t~ 194 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVI-------------DPEQVVEAVD---ENTIGVVCIL 194 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceee-------------CHHHHHHHHh---hCCeEEEEEe
Confidence 1 12356667777776665555444433332222111111 8999999998 4678888888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEehhhhch-h---cccC-ccccccCCCcchhhhh--hhccCCcc
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R---LAYG-GAQEYFGVTPDLTTLG--KIIGGGLP 215 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~-~---~g~~-~~~~~~~~~~di~s~s--K~~~~G~~ 215 (368)
.++++|.+.| +++|+++|+++ |+++++|.+|.++ . .+.. ..+. ....|.+++| |...+...
T Consensus 195 g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~P~g 268 (431)
T TIGR01788 195 GTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLVYPG 268 (431)
T ss_pred CCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCCCCC
Confidence 8888999999 99999999999 9999999999764 1 1221 1111 1234666666 87656678
Q ss_pred ceeeeehHH--HHHHhcCCCCccc----cccCCCCH--HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHh
Q 017633 216 VGAYGGRRD--IMEMVAPAGPMYQ----AGTLSGNP--LAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKK 284 (368)
Q Consensus 216 iG~v~~~~~--~~~~~~~~~~~~~----~~t~~~~~--~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~ 284 (368)
+|+++.+++ +.+.+.....+.. ..+...+. .........+..+...+ ..++..++.+++.++|++
T Consensus 269 ~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~---- 344 (431)
T TIGR01788 269 VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK---- 344 (431)
T ss_pred cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 999877543 3333321100110 01122221 12233344444444433 344455555555555544
Q ss_pred cC-CceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Cccc--cccCCCHHH
Q 017633 285 AG-HAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGF--TSLAHSSDD 353 (368)
Q Consensus 285 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~--~~~~~~~~~ 353 (368)
.+ +....+ ...+++.|.+.... ....+..++.+.|.++|+.+..... ...+ +....+++.
T Consensus 345 ~~~~el~~~~~~~~iV~Fr~~~~~---------~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~ 415 (431)
T TIGR01788 345 LGPFEIISDGSGIPLVAFKLKDDA---------DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDL 415 (431)
T ss_pred CCCEEEeeCCCCceEEEEEeCCCC---------CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHH
Confidence 33 222221 23445555553210 0122357889999999987533221 1122 234567899
Q ss_pred HHHHHHHHHHHHhhC
Q 017633 354 IQHTITAAEKVLRQI 368 (368)
Q Consensus 354 i~~~~~~l~~~l~~~ 368 (368)
++++++.|+.++.++
T Consensus 416 ~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 416 AELLIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=141.14 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=113.8
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++...+|+++++++.+.... ++++||+.|+..++... ..++|+|++.+..|+++.........
T Consensus 45 g~p~~~~lE~~la~leg~~~~-v~~ssG~~Ai~~~l~al--l~~Gd~Vv~~~~~y~~t~~~~~~l~~------------- 108 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGT-VCFATGMAAIAAVFLTL--LRAGDHLVSSQFLFGNTNSLFGTLRG------------- 108 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHH--cCCCCEEEECCCccccHHHHHHHHHh-------------
Confidence 456788999999999876554 55557999999988655 35778898887766554322111111
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
.+.++..++..|+++++++++ +++++++++.++|++|.+.+ +++|+++|++||+++|+|++|.. +.
T Consensus 109 ----~G~~v~~v~~~d~e~l~~~l~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~---~~ 174 (397)
T PRK05939 109 ----LGVEVTMVDATDVQNVAAAIR---PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS---PW 174 (397)
T ss_pred ----cCCEEEEECCCCHHHHHHhCC---CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc---cc
Confidence 122334444448999999997 57889999888888888877 99999999999999999999951 11
Q ss_pred CccccccCCCcchhhhhhhccC-Cccceeeeeh
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGGR 222 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~~ 222 (368)
.+....++.+..+.|+||.++| |.++|+++..
T Consensus 175 ~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 175 LFRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred ccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 1111123443345689999996 7889987663
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=131.88 Aligned_cols=163 Identities=19% Similarity=0.159 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|.++++.+-++... +.+.||+.|...++... ...+|+|+..+.-|.|++..+...
T Consensus 59 i~NPT~~vlE~RiAaLEGG~aa-~a~aSG~AA~~~ai~~l--a~aGD~iVss~~LYGGT~~lf~~t-------------- 121 (426)
T COG2873 59 IMNPTTDVLEERIAALEGGVAA-LAVASGQAAITYAILNL--AGAGDNIVSSSKLYGGTYNLFSHT-------------- 121 (426)
T ss_pred ccCchHHHHHHHHHHhhcchhh-hhhccchHHHHHHHHHh--ccCCCeeEeeccccCchHHHHHHH--------------
Confidence 4567788999999998876544 44558999999999655 257899999888888865433221
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
.+..+.++..++.+|++.++++|+ ++++++++|...|+.+.+.+ +++|+++|++||++||+|...+
T Consensus 122 --l~~~Gi~v~fvd~~d~~~~~~aI~---~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~a----- 187 (426)
T COG2873 122 --LKRLGIEVRFVDPDDPENFEAAID---ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFA----- 187 (426)
T ss_pred --HHhcCcEEEEeCCCCHHHHHHHhC---cccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCC-----
Confidence 223455677787779999999998 68999999999999999999 9999999999999999998885
Q ss_pred cCccccccCCCcchh--hhhhhccC-CccceeeeehH
Q 017633 190 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRR 223 (368)
Q Consensus 190 ~~~~~~~~~~~~di~--s~sK~~~~-G~~iG~v~~~~ 223 (368)
+.+.+..+....|++ |.+|.++| |--||.+++..
T Consensus 188 tpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 188 TPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred cceecchhhcCCCEEEEeecccccCCccccceEEEeC
Confidence 234556666677776 68899996 77788876654
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=142.03 Aligned_cols=216 Identities=17% Similarity=0.098 Sum_probs=138.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+.++...+|++.++++.+... .++++||+.++..++.++ .++++|++.++.|.+.........
T Consensus 47 ~~~p~~~~Le~~lA~l~g~~~-~~~~~sG~aai~~~~~~l---~~Gd~Viv~~~~y~~~~~~~~~~~------------- 109 (377)
T PRK07671 47 TGNPTRAALEELIAVLEGGHA-GFAFGSGMAAITAVMMLF---SSGDHVILTDDVYGGTYRVMTKVL------------- 109 (377)
T ss_pred CCChHHHHHHHHHHHHhCCCc-eEEeCCHHHHHHHHHHHh---CCCCEEEECCCccchHHHHHHHHH-------------
Confidence 456778999999999987544 456777998887665432 567899998888776543222111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++..|+++++++++ +++++++++..+|++|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 110 ---~~~G~~v~~v~~~d~~~l~~ai~---~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~~~~ 179 (377)
T PRK07671 110 ---NRFGIEHTFVDTSNLEEVEEAIR---PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTPYWQ 179 (377)
T ss_pred ---hcCCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 01122334444448999999997 46788888777777788777 999999999999999999999532111
Q ss_pred cCccccccCCCcchhhhhhhccCC--ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~G--~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.. . .++.+.-+.|+||.++|. .-.|++++ ++++++.+.. .........++..+..++..++.+ +-..++
T Consensus 180 ~p--~-~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~---~~~~~g~~~~~~~a~l~~~~l~tl--~~R~~~ 251 (377)
T PRK07671 180 SP--I-SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHF---VQNSTGGILGPQDSWLLLRGLKTL--GIRMEE 251 (377)
T ss_pred Ch--h-hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHH---HHHhhcCCCCHHHHHHHHcCcChH--HHHHHH
Confidence 11 1 123323345788999842 34565655 5667666652 112222245666666665555544 224566
Q ss_pred HHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIID 280 (368)
Q Consensus 267 ~~~~~~~l~~~l~~ 280 (368)
..++.+.+.+.|++
T Consensus 252 ~~~na~~la~~L~~ 265 (377)
T PRK07671 252 HETNSRAIAEFLNN 265 (377)
T ss_pred HHHHHHHHHHHHHc
Confidence 66777777777665
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-17 Score=141.83 Aligned_cols=230 Identities=14% Similarity=0.048 Sum_probs=138.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
-.|.....++++.++++++..+.+++++|+++++..++..+ ..+++.|++..+.+ .+....+...|...........
T Consensus 55 ~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al--~~~gd~Vlv~~~~h-~s~~~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 55 LDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAV--CGPGDKILIDRNCH-KSVINGLVLSGAVPVYLKPERN 131 (294)
T ss_pred CCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHc--CCCCCEEEEeCCch-HHHHHHHHHCCCEEEEecCccC
Confidence 34677888999999999975455556888889999888665 35677888876554 4444445554443322111111
Q ss_pred CCCCCCCCCcccccC-CCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 109 PGVPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
.. ..+. .-|++++++++++++ +++++++... +.+|.+.+ +++|+++|++||+++|+||+|...
T Consensus 132 ~~---------~~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 132 PY---------YGIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred cc---------cCcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhh
Confidence 10 0000 117999999998643 4554444322 34688787 999999999999999999999542
Q ss_pred -hcccC-ccccccCCCcchhhhhhhccCCccceee-eehHHH--HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-
Q 017633 187 -RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAY-GGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 260 (368)
Q Consensus 187 -~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG~v-~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~- 260 (368)
..+.. .....++.+.-+.|++|++ +|++.|++ ..+++. .+.+.. ......+.+++.+.+++...+++.+..
T Consensus 197 ~~~~~~~~~~~~~~~div~~S~hK~l-~g~~~~~~l~~~~~~~~~~~~~~--~~~~~~ttsps~~~~asl~~a~~~~~~~ 273 (294)
T cd00615 197 RFHPILPSSAAMAGADIVVQSTHKTL-PALTQGSMIHVKGDLVNPDRVNE--ALNLHQSTSPSYLILASLDVARAMMALE 273 (294)
T ss_pred ccCcccCcchhhcCCcEEEEchhccc-chHhHHHHHHhCCCcCCHHHHHH--HHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 22211 1112233333345788987 45665544 444331 122221 112234456777777787788776643
Q ss_pred -CCHHHHHHHHHHHHHHHHH
Q 017633 261 -PGTYEYLNKITGELTQGII 279 (368)
Q Consensus 261 -~~~~~~~~~~~~~l~~~l~ 279 (368)
+++.++..++.+.+++++.
T Consensus 274 g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 274 GKELVEELIELALYARQEIN 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777776654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=141.34 Aligned_cols=216 Identities=15% Similarity=0.079 Sum_probs=131.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+..+...+|++.++++.+... .++++||+.|+..++.++ .++++|++.++.|++.........
T Consensus 47 ~~~p~~~~Le~~la~l~g~~~-al~~~SG~~Al~~~l~~l---~pGd~Vi~~~~~y~~t~~~~~~~~------------- 109 (380)
T PRK06176 47 SGNPTRFALEELIADLEGGVK-GFAFASGLAGIHAVFSLF---QSGDHVLLGDDVYGGTFRLFDKVL------------- 109 (380)
T ss_pred CCChhHHHHHHHHHHHhCCCC-EEEECCHHHHHHHHHHHc---CCCCEEEEcCCChhHHHHHHHHHH-------------
Confidence 345668899999999987544 456678999998666433 567899998887766532221110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.++..++..|+++++++++ +++++++++..++++|.+.+ +++|.++|++||+++|+|++|+....+
T Consensus 110 ---~~~gi~v~~vd~~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~~~~ 179 (380)
T PRK06176 110 ---VKNGLSCTIIDTSDLSQIKKAIK---PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATPYYQ 179 (380)
T ss_pred ---HhcCeEEEEcCCCCHHHHHHhcC---cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 01122333444448999999887 46888888877777888888 999999999999999999999632111
Q ss_pred cCccccccCCCcchhhhhhhccC-C-ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.. . .++.+..+.|++|.++| | .-.|+++. ++++.+.++. .........++..+......++.+ +-..++
T Consensus 180 ~p--~-~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~---~~~~~G~~~~~~~~~l~~~gl~tl--~~R~~~ 251 (380)
T PRK06176 180 NP--L-LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAF---FQNAIGGVLGPQDSWLLQRGIKTL--GLRMEA 251 (380)
T ss_pred Cc--c-ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHH---HHHHhcCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 11 1 23333334567799985 4 34666666 4556555542 111111123444444443333322 122344
Q ss_pred HHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIID 280 (368)
Q Consensus 267 ~~~~~~~l~~~l~~ 280 (368)
..++...+.+.|++
T Consensus 252 ~~~~a~~la~~L~~ 265 (380)
T PRK06176 252 HQKNALCVAEFLEK 265 (380)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555554
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=140.55 Aligned_cols=215 Identities=10% Similarity=-0.008 Sum_probs=148.6
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++....|++.++++.++ +..++++||+.|+..++... ..++|+|++....|.+.....-..
T Consensus 60 ~nPt~~~le~~la~LEg~-~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~--------------- 121 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGG-AGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKI--------------- 121 (395)
T ss_pred CChhHHHHHHHHHHHhCC-CeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHH---------------
Confidence 456788999999997754 56667778999999988654 357889998877776654332111
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEehhhhchhc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRL 188 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~--~~li~De~~~~~~~ 188 (368)
....+.++..++..|.++++++++ ++++++++|...|+.+.+.+ +++|+++|+++| +++++|.+++ .
T Consensus 122 -l~~~Gi~v~~vd~~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a---~ 190 (395)
T PRK08114 122 -LSKLGVTTTWFDPLIGADIAKLIQ---PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA---A 190 (395)
T ss_pred -HHhcCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc---c
Confidence 011122344454458899999997 47899999999999999999 999999999985 9999999995 3
Q ss_pred ccCccccccCCCcchh--hhhhhccCC--ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 189 AYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 189 g~~~~~~~~~~~~di~--s~sK~~~~G--~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
+.. ++......|++ |.+|.++|. ...|.++.+++.++.+... ........++..+......++.+ .-..
T Consensus 191 p~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~---~~~~G~~~~p~~a~l~~rgl~TL--~lR~ 263 (395)
T PRK08114 191 GVL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN---SYLMGQMVDADTAYMTSRGLRTL--GVRL 263 (395)
T ss_pred ccc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH---HHhccCCCCHHHHHHHHcCCCcH--HHHH
Confidence 222 33333445654 677999963 6788777777665554421 11122255677777766666544 2345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIIDA 281 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (368)
++..+++..+.+.|++.
T Consensus 264 ~~~~~na~~va~~L~~h 280 (395)
T PRK08114 264 RQHEESSLKVAEWLAEH 280 (395)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 77778888888888764
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=140.54 Aligned_cols=216 Identities=11% Similarity=0.056 Sum_probs=137.9
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+...+|++.++++.+..+. ++++||+.|+..++.+. .++|+|++.++.|++.........
T Consensus 52 ~~p~~~~le~~lA~l~g~~~~-v~~~sG~~ai~~~l~~l---~~Gd~Vlv~~~~y~~~~~~~~~~~-------------- 113 (390)
T PRK08064 52 GNPTREALEDIIAELEGGTKG-FAFASGMAAISTAFLLL---SKGDHVLISEDVYGGTYRMITEVL-------------- 113 (390)
T ss_pred CChhHHHHHHHHHHHhCCCCe-EEECCHHHHHHHHHHHh---CCCCEEEEccCccchHHHHHHHHH--------------
Confidence 346688999999999875444 55578999998888532 567899998888876543222110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
...+.++..++..|++++++.++ +++++++++..+|++|.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 114 --~~~G~~v~~v~~~d~~~l~~~l~---~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~~ 184 (390)
T PRK08064 114 --SRFGIEHTFVDMTNLEEVAQNIK---PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPLLQK 184 (390)
T ss_pred --HHcCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcccccC
Confidence 01122344444458899998887 46888888888888888888 9999999999999999999996331001
Q ss_pred CccccccCCCcchhhhhhhccC--Cccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
.. .++.+.-+.|++|.++| |...|++++ ++++++.++. .........++..+..+...++.+ ....++.
T Consensus 185 --~~-~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~---~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~ 256 (390)
T PRK08064 185 --PL-DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF---LQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHS 256 (390)
T ss_pred --ch-hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHcccCcH--HHHHHHH
Confidence 11 23433334578899974 345677655 4677777652 112222233444444433333322 2345566
Q ss_pred HHHHHHHHHHHHHH
Q 017633 268 NKITGELTQGIIDA 281 (368)
Q Consensus 268 ~~~~~~l~~~l~~~ 281 (368)
.+++..+.+.|++.
T Consensus 257 ~~~a~~la~~L~~~ 270 (390)
T PRK08064 257 SETANKIALYLQEH 270 (390)
T ss_pred HHHHHHHHHHHhcC
Confidence 66666776666653
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=140.46 Aligned_cols=285 Identities=17% Similarity=0.150 Sum_probs=174.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|++.++++.++ +.+++++||+.|+..++..+ .+.+++|++....|++.....-..
T Consensus 52 ~gnPt~~~le~~la~Le~g-~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~-------------- 114 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGG-EDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEEL-------------- 114 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT--SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHC--------------
T ss_pred cccccHHHHHHHHHHhhcc-cceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhh--------------
Confidence 4567788999999988755 67888889999999998655 356889999988888753322211
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEehhhhchhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~-~~li~De~~~~~~~ 188 (368)
....+.++..++..|+++++++++ ++++++++|+..|+...+.+ +++|+++|+++| +++++|++...
T Consensus 115 --l~~~gv~v~~~d~~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at--- 182 (386)
T PF01053_consen 115 --LPRFGVEVTFVDPTDLEALEAALR---PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT--- 182 (386)
T ss_dssp --HHHTTSEEEEESTTSHHHHHHHHC---TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH---
T ss_pred --hcccCcEEEEeCchhHHHHHhhcc---ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc---
Confidence 111233455566668999999998 58999999999998888888 999999999998 99999999852
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccceeeeeh--HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~ 262 (368)
....+.+....|+ .|.+|.++| + .-.|.++++ +++.+.++. .........++..+......++.+ .-
T Consensus 183 --p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~---~~~~~G~~~~p~da~ll~rgl~Tl--~~ 255 (386)
T PF01053_consen 183 --PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLRE---FRRLLGATLSPFDAWLLLRGLRTL--PL 255 (386)
T ss_dssp --TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHH---HHHHHT-B--HHHHHHHHHHHTTH--HH
T ss_pred --eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcc---hhhhcCccchHHHHHHHhcCCCcH--HH
Confidence 1223333334454 578899985 3 557777754 466665542 111122244666666666666544 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceE------------------EeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 263 TYEYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 263 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
..++..++++.+.+.|++. +.+.. ..+.++++.|++.. .......|
T Consensus 256 R~~~~~~nA~~lA~~L~~h----p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~------------~~~~~~~f 319 (386)
T PF01053_consen 256 RMERQNENAEALAEFLEEH----PKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG------------GEEAARRF 319 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTS----TTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCCeEEEcccccccceeeeeecccccCceeEEEecc------------chhhhHhH
Confidence 4566777777777777663 32211 12556688888852 11245666
Q ss_pred HHHHHHcCeeecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHh
Q 017633 325 YRGMLEEGVYFAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.|.=-++..+-|+... ..+++.+.-||.+.+++.|+++++
T Consensus 320 ~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 320 LDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE 386 (386)
T ss_dssp HHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred HhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence 666631111111121110 012345556888899999998874
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-15 Score=134.85 Aligned_cols=308 Identities=14% Similarity=0.013 Sum_probs=176.4
Q ss_pred CcHH-HHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC--CCCeEEEeC-ChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 10 SYLQ-VLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 10 ~~~~-v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~v~~~~-~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
.+|+ |++++.+......+.+ ...+...+.++.++++++ +.++++++. |||.+++.++... ..+++..++.. +
T Consensus 23 ~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l--~~~~~~~vi~~-g 99 (378)
T PRK03080 23 KRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL--LGARRVDHLAW-E 99 (378)
T ss_pred CChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc--CCCCcceEEEe-C
Confidence 3456 8888876543211211 224667888888999887 345788775 9999999999655 23223333334 4
Q ss_pred CCCCchhh-h-hhcCC-CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 85 YHGHADPF-L-VKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 85 ~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.|+..... + ...+. .+.....+ .... .|+++++ .++.+.+..+.+.+|...|
T Consensus 100 ~f~~~~~~~~~~~~g~~~v~~~~~~-~g~~-------------~d~~~i~--------~~~~V~~~h~~t~tG~~~p--- 154 (378)
T PRK03080 100 SFGSKWATDVVKQLKLEDPRVLEAD-YGSL-------------PDLSAVD--------FDRDVVFTWNGTTTGVRVP--- 154 (378)
T ss_pred HHHHHHHHHHHhhcCCCCceEeccC-CCCC-------------CCHhhcC--------CCCCEEEEecCCccceecc---
Confidence 55554332 1 11122 22211111 0000 0444422 1345677777777899999
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhh--hhhccCCccceeeeehHHHHHHhcCCC--C--
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAG--P-- 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~~~~~~~~~~~~--~-- 234 (368)
+++|++ ++||+++++|-+++ .|. ...++. .|++.+ -|++++..++|++++++++++.+.... .
T Consensus 155 -i~~I~~--~~~g~~~vVDa~qs---~G~~pidv~~----iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~ 224 (378)
T PRK03080 155 -VARWIG--ADREGLTICDATSA---AFALPLDWSK----LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPI 224 (378)
T ss_pred -chhhcc--ccCCCeEEEecccc---cccCCCCHHH----CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCC
Confidence 999999 88999999999985 222 233332 366544 499987678999999998887665311 0
Q ss_pred ---------------ccccccC-CCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCC-ceE---Ee-
Q 017633 235 ---------------MYQAGTL-SGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGH-AIC---GG- 292 (368)
Q Consensus 235 ---------------~~~~~t~-~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~---~~- 292 (368)
.....|. +++..+..++.++++.+.+. ++ +.+.++.+.+.+.+.+.+.+.+. ... ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~-e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~ 303 (378)
T PRK03080 225 PKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGL-DALIARTAANASVLYDWAEKTPWATPLVADPAT 303 (378)
T ss_pred chhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 0112222 33445566667888888764 43 44444444444444444333331 111 01
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC----Cccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
....++.+.+.. ++.....++...|+++|+.+..++. ..+| +..+++++|++++++.|+++++
T Consensus 304 ~s~~i~~~~~~~-----------~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 304 RSNTSVTLDFVD-----------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred cCccEEEEEcCC-----------chHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 112344444310 0001223466777788988876432 2344 4677899999999999999886
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 373 ~ 373 (378)
T PRK03080 373 R 373 (378)
T ss_pred H
Confidence 5
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-15 Score=134.47 Aligned_cols=297 Identities=11% Similarity=0.027 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHhhCCC--CCeEEEeCChH-HHHHHHHHHHHHhc-CCceEEEEcCCCCCCchhhhhhcCCCccccCC--C
Q 017633 33 LLENVLAEMVISAVPS--IEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL--P 106 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~--~~~v~~~~~gt-~a~~~al~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 106 (368)
.+..++.+.++++++- ....+++++|| .++.+++..++... +++.||+...+ |.+...++...|.+...... .
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~Vd~~~d 183 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGFEPRVIETVLD 183 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCCeEEEeeeeec
Confidence 3456677777777762 35788898999 68877776654222 35677776654 77777777776665433221 1
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 185 (368)
...... |+++++++++... ..+.+++..|....+|...+ +++|+++|++||+++|+|++|..
T Consensus 184 ~~~~~i-------------D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg~ 246 (444)
T TIGR03531 184 GDELTT-------------DVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYGL 246 (444)
T ss_pred CcCCCc-------------CHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCcC
Confidence 111111 8999999998532 34445554444333334444 99999999999999999999963
Q ss_pred h--hcccCccccccCC-Ccchh--hhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHH
Q 017633 186 F--RLAYGGAQEYFGV-TPDLT--TLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 258 (368)
Q Consensus 186 ~--~~g~~~~~~~~~~-~~di~--s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~ 258 (368)
. ..... ....... ..|++ +++|.+. +|+ .|.++. ++++.+.+... +.+.. .+..++.+...++..-
T Consensus 247 ~~~~~~~~-~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~---y~g~~--~~s~~~~~~~~ll~~G 319 (444)
T TIGR03531 247 QSNKYMEL-INKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKS---YPGRA--SASPSLDVLITLLSLG 319 (444)
T ss_pred cChhhhhh-hhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHh---ccCCC--CChHHHHHHHHHHHhC
Confidence 2 11100 0011111 13544 5669998 444 444546 67777776631 11111 2233444433333322
Q ss_pred cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCe--
Q 017633 259 KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV-- 333 (368)
Q Consensus 259 ~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi-- 333 (368)
.+ +++.++..++++++.+.|.++..+.+.........+ -+++.+..- .+.+..++-..|..++|
T Consensus 320 ~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~-----------~~~~~~~~g~~l~~~~v~g 388 (444)
T TIGR03531 320 SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTL-----------KGKDPTMLGSMLYSRRVTG 388 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccc-----------cccCHHHHHHHHHhCCCCC
Confidence 22 456778888888899999888766654222111111 122322210 12234566777766644
Q ss_pred -e-ecCCC-----------CCcc-------cc----ccCCCHHHHHHHHHHHHHHH
Q 017633 334 -Y-FAPSQ-----------FEAG-------FT----SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 334 -~-~~~~~-----------~~~~-------~~----~~~~~~~~i~~~~~~l~~~l 365 (368)
. |.++. ++.. ++ .+.++++|++.++.+|++.+
T Consensus 389 ~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 389 PRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred ceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 1 12221 0000 11 36779999999999999864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=138.79 Aligned_cols=217 Identities=13% Similarity=0.077 Sum_probs=136.8
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 111 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (368)
.+...+|++.++++.+.. ..++++||+.|+..++..+ ..+++.|++....|.+.........
T Consensus 68 ~p~~~~Le~~lA~l~g~~-~av~~sSG~aAi~~al~al--l~~Gd~Vv~~~~~y~~t~~~~~~~l--------------- 129 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGV-AALLLASGQAAETFAILNL--AGAGDHIVSSPRLYGGTYNLFHYTL--------------- 129 (436)
T ss_pred CchHHHHHHHHHHHhCCC-eEEEEccHHHHHHHHHHHH--hCCCCEEEEeCCcchHHHHHHHHHh---------------
Confidence 566789999999998643 4677778999999998655 3567888888776655432111100
Q ss_pred CCCCCCcccccC-CCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 112 PKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 112 ~~~~~~~~~~~~-~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
...+.+++.++ ..|+++++++++ +++++|+++.+.|+.|.+.+ +++|+++|++||+++|+|++++. +.
T Consensus 130 -~~~Gi~v~~vdd~~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~---~~ 198 (436)
T PRK07812 130 -PKLGIEVSFVEDPDDLDAWRAAVR---PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT---PY 198 (436)
T ss_pred -hcCeEEEEEECCCCCHHHHHHhCC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc---cc
Confidence 00122233332 237899998887 57889999999999999999 99999999999999999999852 11
Q ss_pred CccccccCCCcchhhhhhhccC-Cccceeeee-hHHH------------------------------HHHhcCCCCcccc
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG-RRDI------------------------------MEMVAPAGPMYQA 238 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~-~~~~------------------------------~~~~~~~~~~~~~ 238 (368)
......++.+.-+.|++|.++| |--+|++++ +... +...+. .....
T Consensus 199 ~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 276 (436)
T PRK07812 199 LIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARV--QLLRD 276 (436)
T ss_pred cCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHH--HHHHh
Confidence 1111123333334578899984 433555444 2210 000000 00111
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
.....++..+..++..++.+ +-..++..+++..+.+.|++.
T Consensus 277 ~G~~l~p~~a~l~~rgl~tL--~~R~~~~~~nA~~la~~L~~~ 317 (436)
T PRK07812 277 LGSAISPFNAFLIAQGLETL--SLRIERHVANAQRVAEFLEAR 317 (436)
T ss_pred cCCCCCHHHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 22355666666666665544 345677778888888887764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-15 Score=132.51 Aligned_cols=309 Identities=13% Similarity=0.020 Sum_probs=188.8
Q ss_pred CcHHHHHHHHHHHHcC---------CCCCCC--ChhHHHHHHHHHhhCC-C-C-CeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKG---------TSFGAP--CLLENVLAEMVISAVP-S-I-EMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---------~~~~~~--~~~~~~l~~~l~~~~~-~-~-~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
-+++|++++.+.+.+. ..+..+ .+...+.++.++++++ + . +-+++++||+.+++.++.... .++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~--~~g 91 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL--GGG 91 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC--CCC
Confidence 4678999998876431 112111 2678888999999987 2 2 345666889999999986552 355
Q ss_pred ceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHH-HHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+++++...+.++....-+... |.. .....+...+.. +..++++ .++ ++++++.+.++.+.+
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~-------------~~~~~~~~~l~---~~~~~V~~th~eTst 154 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFT-------------YIPPLDEWQLS---DDAAYVHYTSNETID 154 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCC-------------CCCChhhccCC---CCCCEEEEccCCCcc
Confidence 777777777777655433332 321 111111101111 2333333 554 356788888888888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
|...++ +++| ||+++++|-+++- .+.....+.+ |++.+| |.++ ..++|.+++++++++.+..
T Consensus 155 Gv~~~~---i~~i------~g~l~vVDavss~--g~~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 155 GTEFHE---LPDT------GDVPLVADMSSDI--LSRPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVREDLLGRALP 218 (360)
T ss_pred eEecCc---cccc------CCCcEEEEcCccc--cCccCCHHHc----cEEEEecccccc-CCceEEEEECHHHHhhccc
Confidence 887732 6666 8999999988851 1223344444 354444 9986 4568999999998877654
Q ss_pred C-CCc-------c-ccccCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCceE-E---eeccce
Q 017633 232 A-GPM-------Y-QAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAIC-G---GYISGM 297 (368)
Q Consensus 232 ~-~~~-------~-~~~t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~---~~~~~~ 297 (368)
. +.+ . ....+++|....+++.++++.+.++ + .+.+.++.+.+.+.+.+.+.+.++... . ......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG-~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v 297 (360)
T PRK05355 219 SIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGG-VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMN 297 (360)
T ss_pred CCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcE
Confidence 2 110 0 1123466777888888999988766 4 345555555555555555554543211 0 111233
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+.+ +...+..++.+.+.++|+.+..+.. ..+|+ ..+++.+|++++++.|++++..
T Consensus 298 ~sf~~-------------~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 298 VPFTL-------------ADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred EEEEc-------------CChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 44443 1223335677888899999965532 34554 5667899999999999998753
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=139.70 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=112.4
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+...++++.++++.+... .++++||++|+..++... ..++|+||+.+..|++........
T Consensus 62 ~~p~~~~le~~lA~l~g~~~-av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~~--------------- 123 (433)
T PRK08134 62 SNPTVAVLEERVAALEGGVG-AIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHYT--------------- 123 (433)
T ss_pred cChHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHHH---------------
Confidence 45678899999999987543 688889999999998655 356788999888777643221110
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
....+.++..++.+|+++++++++ +++++|+++...+++|.+.+ +++|+++|++||+++|+|.+|+ .+.
T Consensus 124 -l~~~Gi~v~~vd~~d~~~l~~~i~---~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a---~~~ 192 (433)
T PRK08134 124 -LRRFGIETTFVKPGDIDGWRAAIR---PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT---TPY 192 (433)
T ss_pred -HhhCCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc---ccc
Confidence 001223445555558999999998 57889999988877888888 9999999999999999999995 221
Q ss_pred CccccccCCCcchh--hhhhhccC-Cccceeee
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYG 220 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~-G~~iG~v~ 220 (368)
. ........|++ |.+|.++| |-.+|.++
T Consensus 193 ~--~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v 223 (433)
T PRK08134 193 L--LRPFEHGADLVYHSATKFLGGHGTAIGGVL 223 (433)
T ss_pred c--CCchhcCCCEEEeccccccCCCCCceEEEE
Confidence 1 11223344654 56699984 44455543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=140.16 Aligned_cols=301 Identities=15% Similarity=0.114 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
+...++.++++++.+-....++.++|++|...++...+.+. .++++++.+.+.|++........|.++......
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d- 608 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCD- 608 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccC-
Confidence 46678999999998733577778888888877776666542 245677778889988776666666655443322
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchh
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 187 (368)
..+.. |+++|+++++++.++++++++...++ .|.+.++ +++|+++|+++|.++++|-++..-
T Consensus 609 ~~G~i-------------Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~a- 670 (939)
T TIGR00461 609 QDGNI-------------DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNA- 670 (939)
T ss_pred CCCCc-------------CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhh-
Confidence 22222 89999999986445787777755544 4544332 899999999999999999988421
Q ss_pred cccCccccccCCCcchhhhh--hhcc-----CCccceeeeehHHHHHHhcCCCC---------c----cccccCCCCHHH
Q 017633 188 LAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAGP---------M----YQAGTLSGNPLA 247 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~s--K~~~-----~G~~iG~v~~~~~~~~~~~~~~~---------~----~~~~t~~~~~~~ 247 (368)
-......-....|++.+| |+|+ ||..+|.+.+++++...+..... . ..++....+.+.
T Consensus 671 --l~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~ 748 (939)
T TIGR00461 671 --QVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASI 748 (939)
T ss_pred --CCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHH
Confidence 111111122345887665 9887 56789999999887766652210 0 011122334445
Q ss_pred HHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccc-e--EEEEeecCCCcccchhcccccHH
Q 017633 248 MTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGY-ISG-M--FGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 248 ~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
+..+...+..+..+++ .+....++.+++++|.+. ... ...+ .+. + +.+++.. . +......
T Consensus 749 ~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~~--l~~~~~~~~~hEfv~~~~~--~------~~~~g~~ 815 (939)
T TIGR00461 749 LPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YPI--LFVGTLKHVAHECILDLRP--L------KAKTGIE 815 (939)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---Ccc--cccCCCCceeEEEEEeccc--h------hhhcCCC
Confidence 5555666677766654 344556777888888762 111 1111 111 1 2222221 0 0001234
Q ss_pred HHHHHHHHHHcCeeecCCCCC-----ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLEEGVYFAPSQFE-----AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++++|.+.|++....+++ .+++.-..+++|||++++++.++.++
T Consensus 816 ~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e 867 (939)
T TIGR00461 816 AIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEE 867 (939)
T ss_pred HHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 688999999999987554322 23455667999999999999887644
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=143.98 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--cC---CceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
+...++.++++++++-....+..++|+++...++..++.+ .. +.++++.+.+-|++........|.++.......
T Consensus 542 ~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~ 621 (954)
T PRK05367 542 ELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDE 621 (954)
T ss_pred HHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCC
Confidence 4567888889998874355555666777776767556543 11 234566667778776666666565554433321
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEehhhhch
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMTGF 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 186 (368)
. +.. |+++|++.++.+..+++++++... ++.|.. .+ +++|+++|+++|+++++|.++...
T Consensus 622 ~-G~i-------------D~~~L~~~i~~~~~~la~V~it~p-st~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 622 N-GNI-------------DLDDLRAKAEEHADNLAAIMITYP-STHGVFEET----IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred C-CCc-------------CHHHHHHHHhccCCCeEEEEEEcC-CCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh
Confidence 1 211 899999999864345666655433 333443 45 999999999999999999999521
Q ss_pred hcccCccccccCCCcchhhhh--hhcc-----CCccceeeeehHHHHHHhcCCCC---ccc--cccCCCCHH----HHHH
Q 017633 187 RLAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAGP---MYQ--AGTLSGNPL----AMTA 250 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~s~s--K~~~-----~G~~iG~v~~~~~~~~~~~~~~~---~~~--~~t~~~~~~----~~~a 250 (368)
..+ . ...-....|++++| |+|+ ||-.+|++.+++++...+..... ... .++...++. .+..
T Consensus 683 l~~-l--~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~ 759 (954)
T PRK05367 683 QVG-L--ARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPI 759 (954)
T ss_pred ccC-C--CChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHH
Confidence 011 1 11112345777666 9986 34678888888777766653210 000 011121222 2222
Q ss_pred HHHHHHHHccCCHHHHHH---HHHHHHHHHHHHHHHhcCCceEEeec--cceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 251 GIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYI--SGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 251 ~~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
+...+..+..+++.+... .++++++++|.+.. +.....++. ..-..+++...+ ...+....+++
T Consensus 760 a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~---~~~~~~~~~~~~~e~i~~~~~~~--------~~~g~~~~di~ 828 (954)
T PRK05367 760 SWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHY---PVLYTGANGRVAHECILDLRPLK--------ESTGITVDDIA 828 (954)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhc---CccccCCCCCcccceEEEeeccc--------ccCCCCHHHHH
Confidence 334445555565655544 78888888887742 211100000 011122221100 00122357899
Q ss_pred HHHHHcCeeecCCCCC-----ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 326 RGMLEEGVYFAPSQFE-----AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 326 ~~l~~~Gi~~~~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++|.+.|+.......+ .+.+....+++|+++++++++++..+
T Consensus 829 krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e 875 (954)
T PRK05367 829 KRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE 875 (954)
T ss_pred HHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence 9999999987653321 23456778999999999999988754
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-14 Score=130.88 Aligned_cols=309 Identities=16% Similarity=0.120 Sum_probs=178.2
Q ss_pred CcHHHHHHHHHHHHcCCC--CCC----CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 10 SYLQVLAALGETMKKGTS--FGA----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~--~~~----~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
-++++.+++.+.+..... +.. ..+....+++.++++++. +..++++||+.|+..++... .++++||+.+.
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga-e~a~vv~sgtaAl~l~l~~l---~~GdeVIvs~~ 173 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA-EDALVVNNNAAAVLLALNAL---AAGKEVIVSRG 173 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHHh---CCCCEEEEcch
Confidence 467899999888766321 111 123456888889888864 45778888999999888543 56788888765
Q ss_pred CCC--CCchh---hhhhcCCCccccCCCCCCCCCCCCCCcccccCC---CCHHHHHHHHHcCCCCeEEEEEcccCCC--C
Q 017633 84 CYH--GHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 153 (368)
Q Consensus 84 ~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~~~~~~~~~~~~~~~~~~~~--~ 153 (368)
.+. +.... .+...|. +++.++. .++++++++++ ++++++++++..+. .
T Consensus 174 e~~~~ggs~~i~~~~~~~G~-------------------~l~~v~~~~~t~~~dle~aI~---~~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 174 ELVEIGGAFRIPDVMRQAGA-------------------RLVEVGTTNRTHLRDYEQAIN---ENTALLLKVHTSNYRIE 231 (464)
T ss_pred hhhhcCcchhhHHHHHHCCc-------------------EEEEECCCCCCCHHHHHHhcC---ccCeEEEEEcCCCcccc
Confidence 443 21111 1122222 2222221 26889999997 46777776666543 3
Q ss_pred C--cccCCHHHHHHHHHHHHHhCCEEEEehhhhchh----c---ccCccccccCCCcchhhhh--hhccCCccceeeeeh
Q 017633 154 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGFR----L---AYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 222 (368)
Q Consensus 154 g--~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~----~---g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~ 222 (368)
| ...+ +++|+++|++||+++++|.+..-+. . ......+.....+|+++|| |.++|+ ..|+++++
T Consensus 232 G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~ 306 (464)
T PRK04311 232 GFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGK 306 (464)
T ss_pred ccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEc
Confidence 3 3455 9999999999999999998642110 1 1111112223456888777 999865 48888999
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc--CCH------------HHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGT------------YEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~------------~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
+++++.++... ..-.+..+-...++..+++....+ +.+ .++..++++.+.+.|.+.... +..
T Consensus 307 ~~li~~l~~~~---~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~-~~~ 382 (464)
T PRK04311 307 KELIARLKKHP---LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA-AFA 382 (464)
T ss_pred HHHHHHHhhch---hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC-Cee
Confidence 98888776321 111222233344444444442221 111 366777777777777764211 110
Q ss_pred eEEe------eccc-------eEEEEeecCCCcccchhcccccHHHHHHHHHHHHc--CeeecCCCCCcccc-ccCCCHH
Q 017633 289 ICGG------YISG-------MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE--GVYFAPSQFEAGFT-SLAHSSD 352 (368)
Q Consensus 289 ~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gi~~~~~~~~~~~~-~~~~~~~ 352 (368)
..+. +.|. -+.+.+. +......++.+.|++- .|+.+... ..+.+ ..+..++
T Consensus 383 ~~~~~~~~~~gggs~p~~~~~~~~v~~~------------~~~~~~~~l~~~lr~~~~~i~~r~~~-~~~~ld~r~~~~~ 449 (464)
T PRK04311 383 VEVVPSFSQVGGGSLPVDRLPSAAVTLT------------PKDRSLEALAARLRLLPPPVIGRIED-GRLLLDLRTLEEE 449 (464)
T ss_pred EEEEEccCccCCCCCcCCCCCeEEEEEe------------CCCCCHHHHHHHHhcCCCCEEEEEEC-CEEEEEeCcCCHH
Confidence 0111 1111 1122221 1122357888888864 46665332 22333 4456888
Q ss_pred HHHHHHHHHHHHHh
Q 017633 353 DIQHTITAAEKVLR 366 (368)
Q Consensus 353 ~i~~~~~~l~~~l~ 366 (368)
|.+.++++|++++.
T Consensus 450 ~~~~~~~~~~~~~~ 463 (464)
T PRK04311 450 DEERLAAALLEALN 463 (464)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-14 Score=136.42 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=174.1
Q ss_pred hHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 34 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 34 ~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
...++.+.++++++-....+.-++|+.+...+++..+.|. +++++++.+.+-|++........|.++...... .
T Consensus 544 ~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D-~ 622 (954)
T PRK12566 544 MIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECD-P 622 (954)
T ss_pred HHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccC-C
Confidence 4557888888888633346666688888888887776642 234556666677776555555555554433222 1
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
++.. |+++|+++++++.++++++++..+++.++...+ +++|+++|+++|+++++|-++. .
T Consensus 623 ~G~i-------------Dle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~---~ 682 (954)
T PRK12566 623 DGNV-------------DLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANL---N 682 (954)
T ss_pred CCCc-------------CHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeCh---h
Confidence 2322 899999999865567777666544433332222 9999999999999999998884 1
Q ss_pred ccCccccc-cCCCcchhhhh--hhcc-----CCccceeeeehHHHHHHhcCCC------C-cccc---ccCCCCHHHHHH
Q 017633 189 AYGGAQEY-FGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAG------P-MYQA---GTLSGNPLAMTA 250 (368)
Q Consensus 189 g~~~~~~~-~~~~~di~s~s--K~~~-----~G~~iG~v~~~~~~~~~~~~~~------~-~~~~---~t~~~~~~~~~a 250 (368)
+-. .... -....|++.++ |+|+ ||..+|.+.+.+++...+.... . ...+ +....+.+.+.+
T Consensus 683 a~~-~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~ 761 (954)
T PRK12566 683 AQV-GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPI 761 (954)
T ss_pred hcc-CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHH
Confidence 111 1111 22345776655 9885 3467888777887776665321 0 1111 122222233444
Q ss_pred HHHHHHHHccCCHHHHH----HHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 251 GIHTLKRLKEPGTYEYL----NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 251 ~~~~l~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
+..-++.+..+ + .+. ..++.+++++|.+. .+..........+.-+-+.....+. ....+..++++
T Consensus 762 A~~Yi~~lG~e-L-k~aa~~ailnAnYla~rL~~~---~~v~~~~~~~~~~hEfii~~~~l~~------~~g~~~~dvak 830 (954)
T PRK12566 762 SWMYIAMMGPQ-L-ADASEVAILSANYLANQLGGA---FPVLYRGRNERVAHECILDLRPLKA------QTGISEEDVAK 830 (954)
T ss_pred HHHHHHHHCHH-H-HHHHHHHHHHHHHHHHHhHhh---CCCCcCCCCCCeeeEEEEEcccccc------ccCCCHHHHHH
Confidence 44444555444 3 232 34677777777662 2222211001111222222111000 01233578999
Q ss_pred HHHHcCeeecCCCCC-----ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 327 GMLEEGVYFAPSQFE-----AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 327 ~l~~~Gi~~~~~~~~-----~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+|.+.||.......+ .+.+....+++|+++++++|+++.++
T Consensus 831 RL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 831 RLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred HHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 999999876543211 13356778999999999999988765
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-15 Score=126.08 Aligned_cols=327 Identities=17% Similarity=0.178 Sum_probs=207.8
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC-------CCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG-------TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.+.|.+|. .++++.+.....+.+. .+++.+-+.+.++.+.+++.++-.+.++++. |.+++..++.+. .
T Consensus 100 aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~-gF~ti~S~ipaf---s 175 (467)
T KOG1358|consen 100 ASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSY-GFSTIESAIPAF---S 175 (467)
T ss_pred cchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeecc-ccchhhhcchhh---h
Confidence 35666776 8889999998888883 3456677889999999999998667788776 888888888655 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-------C---CeEE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-------G---EIAA 143 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-------~---~~~~ 143 (368)
.+.+|++.+..-+......+.+ +...+..+.++|.+++|+.+.+.+ . ..+.
T Consensus 176 KrGDIi~~de~~nfaIq~Glql-------------------SRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 176 KRGDIIFVDEAVNFAIQKGLQL-------------------SRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred ccCcEEEEehhhhHHHHHHHhh-------------------hhheeEEecCCCHHHHHHhccCcchhhhhccccccceEE
Confidence 3445666554443332232332 223455666779999988876532 1 2568
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch--hcccCccccccCCC---cchhh--hhhhccCCcc
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF--RLAYGGAQEYFGVT---PDLTT--LGKIIGGGLP 215 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~--~~g~~~~~~~~~~~---~di~s--~sK~~~~G~~ 215 (368)
++++..+.|+|.+.+ +.+|..+..||...+|.||.+ .|. ++| .+..+++++. .|+++ ++-++++ .
T Consensus 237 iv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~G-rGvteH~~v~~~~iDiv~~sm~~alas--~ 309 (467)
T KOG1358|consen 237 IVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTG-RGVTEHFGVPITDIDIVTASMETALAS--G 309 (467)
T ss_pred EEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccC-ccccccCCCCccceeeeeecccccccc--c
Confidence 999999999999999 999999999999999999999 444 333 3456777765 35554 4455541 1
Q ss_pred ceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 216 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 216 iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
-|+.+++.-+.++-+-.+..+-.+ -+.++....++..+++.++. ++..+.++.....+...|... .++.......
T Consensus 310 GgFc~G~~~i~~hQrLSg~~Y~fS-AslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~---s~~~v~~~~~ 385 (467)
T KOG1358|consen 310 GGFCAGKSFIADHQRLSGSGYCFS-ASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN---SGFIVSGSPE 385 (467)
T ss_pred CceeecceeeEeeeeccccceeee-ccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcC---CceEEecCcC
Confidence 233344333333322222222222 25567777777778877754 445555666656665555541 2233333344
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC----------CCc--cccccCCCHHHHHHHHHHHH
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEA--GFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------~~~--~~~~~~~~~~~i~~~~~~l~ 362 (368)
.++.-+.+..+...- . .+...-+++++.+..+|+.+.... .+. +++...++++|++++.+.|+
T Consensus 386 SPi~hl~l~~~~~s~-e----~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik 460 (467)
T KOG1358|consen 386 SPIIHLQLERSYGSR-E----KEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK 460 (467)
T ss_pred Cceeeeeecccccch-H----HHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 555566655422111 0 122334677777777788776541 111 24467889999999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
+....
T Consensus 461 ~~~~~ 465 (467)
T KOG1358|consen 461 EVASA 465 (467)
T ss_pred HHHHh
Confidence 87654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-14 Score=127.83 Aligned_cols=308 Identities=14% Similarity=0.119 Sum_probs=173.8
Q ss_pred ccCC--CcHHHHHHHHHHHHcCCC--C----CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 6 ILFP--SYLQVLAALGETMKKGTS--F----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 6 ~~g~--~~~~v~~a~~~~~~~~~~--~----~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
++|. -++++++++.+.+..... + +........+++.++++++..+ .++++||+.|+..++..+ .++++
T Consensus 87 Nlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~-alvv~sg~aAi~l~l~~l---~~Gde 162 (454)
T TIGR00474 87 NLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED-ALVVNNNAAAVLLALNTL---AKGKE 162 (454)
T ss_pred cCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHh---CCcCE
Confidence 4454 357899999988876321 1 1122446788899999886434 556778999998888543 56788
Q ss_pred EEEEcCCC---CCCchh--hhhhcCCCccccCCCCCCCCCCCCCCcccccCC---CCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 78 IIKFEGCY---HGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 78 vi~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
||+.+..+ .++... .+...|. ++..++. .++++++++++ ++++++++++.
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~-------------------~~~~v~~~~~~~l~dle~aI~---~~T~lv~~~h~ 220 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGA-------------------KLVEVGTTNRTHLKDYEDAIT---ENTALLLKVHT 220 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCC-------------------EEEEeCCCCCCCHHHHHHhcC---cCCEEEEEEcc
Confidence 88877653 232111 1111222 2222222 26899999987 46777666665
Q ss_pred CCC--CC--cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hc------ccCccccccCCCcchhhhh--hhccCCccc
Q 017633 150 VGN--SG--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL------AYGGAQEYFGVTPDLTTLG--KIIGGGLPV 216 (368)
Q Consensus 150 ~~~--~g--~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~------g~~~~~~~~~~~~di~s~s--K~~~~G~~i 216 (368)
.+. .| ...+ +++|+++|++||+++++|.+..-+ .. ......+.....+|+++|| |.++|. ..
T Consensus 221 sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~ 295 (454)
T TIGR00474 221 SNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QA 295 (454)
T ss_pred CcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eE
Confidence 443 34 3566 999999999999999999753111 00 1111122233456888888 999765 47
Q ss_pred eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc--CC------------HHHHHHHHHHHHHHHHHHHH
Q 017633 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PG------------TYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 217 G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~------------~~~~~~~~~~~l~~~l~~~~ 282 (368)
|++++++++++.+.... ..-.+..+-...++..+.+....+ +. ..++..++++.+.+.|++.+
T Consensus 296 G~i~g~~~~i~~l~~~~---l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~ 372 (454)
T TIGR00474 296 GIIVGKKELIERLKKNP---LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAAL 372 (454)
T ss_pred EEEEECHHHHHhhhhch---hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhc
Confidence 88889888887765321 111112222333333344433222 11 13467778888888887742
Q ss_pred HhcCCceEEe------ecc-------ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcC--eeecCCCCCcccc-c
Q 017633 283 KKAGHAICGG------YIS-------GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPSQFEAGFT-S 346 (368)
Q Consensus 283 ~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--i~~~~~~~~~~~~-~ 346 (368)
. .+....+. +.| +-+.+.+. +......++.+.|++.. |+.+... ..+.+ .
T Consensus 373 ~-~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~------------~~~~~~~~l~~~lr~~~~~ii~r~~~-~~~~ld~ 438 (454)
T TIGR00474 373 G-PGFELEIVPGLSQVGGGSLPDERLPSYAVTLT------------PDGLSAEKLEARLRELPPPIIGRIED-DRFLLDL 438 (454)
T ss_pred c-CCceEEEEEcCCcccCCCCcCCCCCeEEEEEe------------cCCCCHHHHHHHHhcCCCCEEEEEEC-CEEEEEe
Confidence 2 11111111 111 11222221 12223578888888654 5554322 22333 3
Q ss_pred cCCCHHHHHHHHHHH
Q 017633 347 LAHSSDDIQHTITAA 361 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l 361 (368)
.+..++|++.++++|
T Consensus 439 r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 439 RTLLEDEEELLIEAL 453 (454)
T ss_pred CcCCHHHHHHHHHHh
Confidence 455778888877765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=130.65 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=135.5
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+....+++.++++.+.. ..++++||++|+..++..+ ..++|+||+.+..|.+..........
T Consensus 67 ~~pt~~~le~~la~l~g~~-~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~l~------------- 130 (437)
T PRK05613 67 TNPTVEALENRIASLEGGV-HAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVTLN------------- 130 (437)
T ss_pred cChHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHHHH-------------
Confidence 4566789999999988754 5555567999999887654 35678899887777765321111100
Q ss_pred CCCCCCCcccccC-CCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 111 VPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 111 ~~~~~~~~~~~~~-~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+.++..++ ..|+++++++++ +++++++++...++.|.+.+ +++|+++|+++|+++|+|.+++ .+
T Consensus 131 ---~~Gi~v~~vd~~~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a---~g 197 (437)
T PRK05613 131 ---RLGIEVTFVENPDDPESWQAAVQ---PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA---TA 197 (437)
T ss_pred ---hcCeEEEEECCCCCHHHHHHhCC---ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc---cc
Confidence 0112223332 227899999987 46788888887777778888 9999999999999999999985 22
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccceeeee-hHHHH-HH-------------------------hc-------CCCC
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG-RRDIM-EM-------------------------VA-------PAGP 234 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~-~~~~~-~~-------------------------~~-------~~~~ 234 (368)
.......+|.+.-+.|+.|.++| |-.+|.+++ +.+.. .. +. ....
T Consensus 198 ~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (437)
T PRK05613 198 ALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAG 277 (437)
T ss_pred cccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHH
Confidence 22112234442223456699985 444555433 32200 00 00 0000
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
.........++..+..+...++.+ +-..++..+++..+.+.|++.
T Consensus 278 ~~~~~G~~~~p~~a~l~~rgl~TL--~lR~~~~~~nA~~lA~~L~~h 322 (437)
T PRK05613 278 LLRDTGATLSPFNAWVTAQGLDTL--SLRLERHNENAIKVAEFLNNH 322 (437)
T ss_pred HHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHcC
Confidence 111223356777777766666654 334567777888888887764
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-15 Score=129.79 Aligned_cols=290 Identities=18% Similarity=0.147 Sum_probs=185.3
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++....|.+.++++- +.++.+.++||+.|+..++..+ ..++|.|++....|.+...-+-..
T Consensus 61 ~nPT~~~lE~~~a~LE-g~~~~~afsSGmaAI~~~~l~l--l~~GD~vl~~~~~YG~t~~~~~~~--------------- 122 (396)
T COG0626 61 GNPTRDALEEALAELE-GGEDAFAFSSGMAAISTALLAL--LKAGDHVLLPDDLYGGTYRLFEKI--------------- 122 (396)
T ss_pred CCccHHHHHHHHHHhh-CCCcEEEecCcHHHHHHHHHHh--cCCCCEEEecCCccchHHHHHHHH---------------
Confidence 4567788888888887 4466777789999999987655 346899999888777754322222
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
....+.++..++..+.+++++++.. ++++++++|+..|+.-.+.+ +++|+++|+++|+++|+|++++ +
T Consensus 123 -l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfa-----t 190 (396)
T COG0626 123 -LQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFA-----T 190 (396)
T ss_pred -HHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCcc-----c
Confidence 1112334555554466677777763 48999999999998888888 9999999999999999999996 2
Q ss_pred CccccccCCCcchh--hhhhhccCC--ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~G--~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
+...+.+....|++ |.+|.++|. .-.|.+++ ++++.+.+... .........++..+...+..++.+ .-..+
T Consensus 191 P~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~--~~~~~G~~l~p~dA~l~lRGlkTL--~~Rm~ 266 (396)
T COG0626 191 PVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA--QRANTGAVLSPFDAWLLLRGLRTL--ALRME 266 (396)
T ss_pred ccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH--HHhhcCCCCCHHHHHHHHhccchH--HHHHH
Confidence 23344455556665 778999974 56676664 45666655210 011122245677777777777765 33456
Q ss_pred HHHHHHHHHHHHHHHHHH--h--cC-Cc---------eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 266 YLNKITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~--~--~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+..+++..+.+.|++... + +| ++ ....+.|.++.|.+.. +....+|.+.|.--
T Consensus 267 ~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~-------------~~~~~~f~~~L~l~ 333 (396)
T COG0626 267 RHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN-------------EEAAKKFLDSLKLF 333 (396)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC-------------hHHHHHHHHhCCcc
Confidence 777777777777776210 0 00 00 0111467788888742 13345565555422
Q ss_pred CeeecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 332 GVYFAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 332 Gi~~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..+-|+... ..+++.+.-|+++.+++-|+++++.
T Consensus 334 ~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~ 394 (396)
T COG0626 334 KLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAK 394 (396)
T ss_pred EEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 22333232110 0123455668888899999988865
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-13 Score=120.15 Aligned_cols=289 Identities=13% Similarity=0.031 Sum_probs=177.9
Q ss_pred ChhHHHHHHHHHhhCC-CC--CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.+.+.++.++++++++ +. ..-.+|+|||+++..++.++|.+.+ +.++..+...|.+...+....|.++...+....
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~-~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~ 210 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFP-DGILYASRESHYSVFKAARMYRMECVKVDTLVS 210 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcC-CcEEEEcCCccHHHHHHHHhcCCcceEeccCCC
Confidence 4678888999999887 32 3578899999999999999987533 457777888888888888777776554433222
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-----EEEEehhh
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA-----LLIFDEVM 183 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~-----~li~De~~ 183 (368)
..+ |+++|++.+.++..++.+++..-...+.|.+-| +++|.++|++||+ +|++|.+|
T Consensus 211 g~m--------------D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~ 272 (470)
T PLN02263 211 GEI--------------DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGAL 272 (470)
T ss_pred CcC--------------cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccc
Confidence 222 899999999865334555555554455677666 9999999999997 99999999
Q ss_pred hch-h-cccCccccccCC--Ccchhhh--hhhccCCccceeeeehHHHHHHhcCCCCccc--cccCCCC--HHHHHHHHH
Q 017633 184 TGF-R-LAYGGAQEYFGV--TPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSGN--PLAMTAGIH 253 (368)
Q Consensus 184 ~~~-~-~g~~~~~~~~~~--~~di~s~--sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~--~~t~~~~--~~~~~a~~~ 253 (368)
.|+ . .... ...+.. ..|-+++ -|.++..+++|.++.+++..+.+.....+.. ..+..++ ......++.
T Consensus 273 GG~~lPf~~~--~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 273 FGLMMPFVKR--APKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred hhhHhhhccc--ccccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 876 2 1010 011111 1233333 3998888999999887665544432111111 1122222 223455566
Q ss_pred HHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHH
Q 017633 254 TLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 330 (368)
Q Consensus 254 ~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (368)
.++.+..+++ .++..++++++.+++++. +......+....+.+.. +. .....
T Consensus 351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~V~f~~-------------p~--------~~~~~ 405 (470)
T PLN02263 351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSSTVVFER-------------PK--------DEEFV 405 (470)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceEEEEec-------------Cc--------hHHhh
Confidence 7776655544 444555566666666553 44333333334434321 11 11134
Q ss_pred cCeeecCCCCC-ccccccCCCHHHHHHHHHHHHHHHh
Q 017633 331 EGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 331 ~Gi~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+|..+...+.. ++.+....+.+.++++++.|++...
T Consensus 406 ~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 406 RRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred cceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 66666654433 2233444688999999999987653
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-14 Score=125.68 Aligned_cols=306 Identities=13% Similarity=-0.008 Sum_probs=171.4
Q ss_pred CcHHHHHHHHHHHHcC--CCCC--CCChhHHHHHHHHHhhCC-C-CCeEEEe-CChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKG--TSFG--APCLLENVLAEMVISAVP-S-IEMVRFV-NSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~--~~~~--~~~~~~~~l~~~l~~~~~-~-~~~v~~~-~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
-+|+|++++.+..... ..+. ...+...+.++.++++++ . .++|+|+ +|||.+++.++.... . ++..++..
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--~-~~~l~i~~ 90 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--E-KKSLHLSF 90 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--c-ccccEEec
Confidence 4567777776431111 1121 224677888999999987 3 3467775 779999999996542 1 22333333
Q ss_pred CCCCCCchhhhhhc---CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 83 GCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 83 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+.++....-.... ...+.. +..+++ +.++..+. ++++++.+.++.+.+|.+.|
T Consensus 91 -G~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~--~~~~~~~~---~~~~lV~~~h~et~tG~~~p- 146 (361)
T TIGR01366 91 -GEFSSKFAKAVKLAPWLGEPII-----------------VTADPG--SAPEPQAD---PGVDVIAWAHNETSTGVAVP- 146 (361)
T ss_pred -CHHHHHHHHHHHhhhccCCceE-----------------EecCCC--CCCCCccC---CCCCEEEEcccCCccceecc-
Confidence 4444333222221 111111 111111 11111122 47889999898888999998
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcc-cCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCC---C
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPA---G 233 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g-~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~---~ 233 (368)
+++| ++++|+++++|.+++ .| ....++. .|++.+| |++++.-.++.+++++++++.+... +
T Consensus 147 ---i~~I---~~~~g~~~iVDavqs---~g~~~idv~~----~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~ 213 (361)
T TIGR01366 147 ---VRRP---EGSDDALVVIDATSG---AGGLPVDIAE----TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASG 213 (361)
T ss_pred ---cccc---cccCCCeEEEEcCcc---ccCCCCCHHH----CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCC
Confidence 7776 588999999999985 22 2223332 4766555 9998422355667788877665521 1
Q ss_pred C---ccc-----------cccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEee---c
Q 017633 234 P---MYQ-----------AGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGY---I 294 (368)
Q Consensus 234 ~---~~~-----------~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~---~ 294 (368)
. .+. ..|. +++.....+..++++.+.+.+-.+...++.+.+.+.+.+.+...+.. ..... .
T Consensus 214 ~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 293 (361)
T TIGR01366 214 RWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKR 293 (361)
T ss_pred CCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhc
Confidence 0 010 1223 33444455777888888654212334344444444444433333311 01101 0
Q ss_pred cce-EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC----CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 295 SGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
... ..+.+ +++.+..++.+.|.++||.+.++. ...+|+ ...++++|+++++++|++++++
T Consensus 294 s~~v~~v~~-------------~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 294 SQVVGTIDF-------------VDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ccceEEEEC-------------CCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 111 11221 123345789999999999998763 223444 5678999999999999999876
Q ss_pred C
Q 017633 368 I 368 (368)
Q Consensus 368 ~ 368 (368)
+
T Consensus 361 ~ 361 (361)
T TIGR01366 361 L 361 (361)
T ss_pred C
Confidence 4
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-14 Score=133.48 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
.+.....+..+..++.|+.....+++||.|.++..++..+. +++|.|+ ++.+.|.+...++.+.|...++.. |...
T Consensus 202 ~p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~--~~gd~Vl-v~RN~HKSv~~al~L~ga~Pvyl~-P~~~ 277 (755)
T PRK15029 202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--TDNDVVV-VDRNCHKSIEQGLILTGAKPVYMV-PSRN 277 (755)
T ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc--CCCCEEE-eecccHHHHHHHHHHcCCeEEEec-cccc
Confidence 35566777788888888765677777766677776665552 4555554 588999999999999887543321 1111
Q ss_pred CCCCCCCCcccccC--CCCHHHHHHHHHcCCCCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 017633 110 GVPKGATYETLTAP--FNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 179 (368)
Q Consensus 110 ~~~~~~~~~~~~~~--~~d~~~le~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~ 179 (368)
..-. .-.++ +-+++.++++++++++.. ++++++|.+ .|.... +++|+++|++++++|++
T Consensus 278 ~~Gi-----~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llv 346 (755)
T PRK15029 278 RYGI-----IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHF 346 (755)
T ss_pred ccCC-----ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEE
Confidence 1000 00111 114899999998876544 577777766 688888 99999999999999999
Q ss_pred ehhhhc-hhcccCccc-ccc-----C-CCcc-hhhhh--hhccCCc-cceeeeehHH--HH--HHhcCCCCccccccCCC
Q 017633 180 DEVMTG-FRLAYGGAQ-EYF-----G-VTPD-LTTLG--KIIGGGL-PVGAYGGRRD--IM--EMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 180 De~~~~-~~~g~~~~~-~~~-----~-~~~d-i~s~s--K~~~~G~-~iG~v~~~~~--~~--~~~~~~~~~~~~~t~~~ 243 (368)
||||.. |.....+.. ... . ..+| +++.| |.++ ++ ..+++..+.. .+ +.++. .+....|.++
T Consensus 347 DEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~-alTQaS~LHv~~~~~~id~~r~~~--~l~~~qSTSP 423 (755)
T PRK15029 347 DEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSP 423 (755)
T ss_pred ECccccccccCccccccccccccccccCCCceEEEEchhhccc-chhhhhhheeCCCccccCHHHHHH--HHHHHcCCCc
Confidence 999943 322222221 112 2 4567 66655 7775 34 3334444322 11 22221 1224456688
Q ss_pred CHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~ 281 (368)
+.+-+++...+.++++. +.+.++..+....+|+.+.++
T Consensus 424 SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888887763 235677888888888888765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-13 Score=118.38 Aligned_cols=307 Identities=15% Similarity=0.042 Sum_probs=186.3
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------CCC---hhHHHHHHHHHhhCC--CCCeEEEe-CChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGT--SFG------APC---LLENVLAEMVISAVP--SIEMVRFV-NSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~--~~~------~~~---~~~~~l~~~l~~~~~--~~~~v~~~-~~gt~a~~~al~~~~~~~~~ 75 (368)
.|..|++++.+++.+.. +.+ ..+ +...++++.+.++++ ..+.++++ .|||.|++.++.... .++
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--AEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--CCC
Confidence 46689999999888521 111 112 567788888888887 23456666 559999999996552 356
Q ss_pred ceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCC---CHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++++...+.++....-+... |. +.....+. ..++. |+++++ ++ ++++.+.+..+.+
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~-------------~~~~~~~~~~~~~~--~~---~~~~~v~~th~ET 141 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGK-------------EGNYTKIPDPSTWE--IS---EDAAYVHYCANET 141 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccc-------------cCCCCCCCCHHhcC--CC---CCCCEEEEcCCCC
Confidence 778888777777655433332 22 21111110 01111 444444 12 3677888878777
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhh--hhhhccCCccceeeeehHHHHHHh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s--~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
.+|...+ ++++.+++++++|-+++- .+....++.++ ++. ..|+++ ..++|.+++++++++.+
T Consensus 142 stGv~~~---------~l~~~~~~l~iVDavss~--g~~~id~~~~d----~~~~ssqK~lg-P~Glg~l~~s~~~~~~~ 205 (349)
T TIGR01364 142 IHGVEFR---------ELPDVKNAPLVADMSSNI--LSRPIDVSKFG----LIYAGAQKNIG-PAGLTVVIVRKDLLGRA 205 (349)
T ss_pred cccEecc---------eecccCCCeEEEEccccc--cCccCCHHHcc----EEEEecccccC-CCceEEEEECHHHHhhc
Confidence 7887554 566678999999988851 12233444443 444 449996 44689999999988776
Q ss_pred cCCCC-cc-------cccc-CCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcC-CceE-E--eecc
Q 017633 230 APAGP-MY-------QAGT-LSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAG-HAIC-G--GYIS 295 (368)
Q Consensus 230 ~~~~~-~~-------~~~t-~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~-~--~~~~ 295 (368)
..... .. ...+ +++|....++..++++.+.++ + .+.+.++.+.+.+.+.+.+...+ +... . ....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG-~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs 284 (349)
T TIGR01364 206 SRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGG-VKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRS 284 (349)
T ss_pred ccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcC
Confidence 53211 00 0122 366777888888999988765 4 35555555555555555555553 2111 1 0111
Q ss_pred -ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 -GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+.+.+. ......++.+.+.++|+.+.++.. ..+|+ ..+++++|+++++++|++++.+
T Consensus 285 ~~v~sf~~~-------------~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 285 RMNVVFTLG-------------NEELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CeEEEEecC-------------ChhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 33444431 112235677888999996665532 34554 5667899999999999998754
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=113.92 Aligned_cols=165 Identities=27% Similarity=0.230 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCC
Q 017633 35 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 113 (368)
Q Consensus 35 ~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (368)
..++++.+++.++ +.+++.+++||++|+..+++.+. ..++.|++..+.|++.........+.++............
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~- 78 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGG- 78 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccc-
Confidence 3577888888884 56788899999999999998773 3467899988888887532233333333221111111000
Q ss_pred CCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc
Q 017633 114 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192 (368)
Q Consensus 114 ~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~ 192 (368)
.+.+++++... .++++++++.+.++++|...+ +++|.++|+++|+++|+|++|.++ .....
T Consensus 79 -----------~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~- 140 (170)
T cd01494 79 -----------LDVAILEELKA--KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG- 140 (170)
T ss_pred -----------hhhhhhhhccc--cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc-
Confidence 02224443332 357899999988888888887 799999999999999999999765 32111
Q ss_pred cccccCCCcchhh--hhhhccCCccceeeeeh
Q 017633 193 AQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 193 ~~~~~~~~~di~s--~sK~~~~G~~iG~v~~~ 222 (368)
.......+|+++ ++|.+++ .++|+++++
T Consensus 141 -~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 141 -VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred -cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 112233467665 4599986 789988753
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-14 Score=125.95 Aligned_cols=211 Identities=17% Similarity=0.156 Sum_probs=132.0
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+...+|.+.++++.+. +.++.++||+.|+..++... ..++|.||+....|.+........
T Consensus 62 ~~P~~~~lE~~la~leg~-~~av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~--------------- 123 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENA-EHALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKV--------------- 123 (384)
T ss_pred CChhHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHH---------------
Confidence 456678899999998864 45677889999999999755 357889998766665543221111
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
....+.++..++.++.+.++ +. ++++++++++.+.++++.+.+ +++|+++|++++ +++|.++..
T Consensus 124 -~~~~Gi~v~fvd~~~~~~~~--l~--~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s----- 187 (384)
T PRK06434 124 -LKTLGIHVDYIDTDRLNSLD--FD--PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS----- 187 (384)
T ss_pred -HHhcCcEEEEECCCChhhee--ec--CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-----
Confidence 00112223333332333333 22 346899999998888777777 999999999998 467999731
Q ss_pred CccccccCCCcchh--hhhhhccC-C-ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~-G-~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.......+...|++ |.+|.++| | .-.|.++. ++++.+.++. .........+++.++.++..++.+ +.+.+
T Consensus 188 ~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~---~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~ 262 (384)
T PRK06434 188 PYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE---RRKTLGSNPDPIQAYLALRGLKTL--GLRME 262 (384)
T ss_pred cccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhCCCcH--HHHHH
Confidence 11222334455665 45599985 3 33566655 4556555442 111122345677777766666544 44566
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..++++.+.+.|..
T Consensus 263 r~~~~a~~~a~~L~~ 277 (384)
T PRK06434 263 KHNKNGMELARFLRD 277 (384)
T ss_pred HHHHHHHHHHHHHHc
Confidence 777777777777765
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=116.44 Aligned_cols=304 Identities=14% Similarity=0.011 Sum_probs=164.8
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCch-hhhhhcCCCccccC-----
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-PFLVKAGSGVATLG----- 104 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~----- 104 (368)
.++...+|.+.++++++ .+.++.++||+.|+++++.+. .++++.| ++.+|..+. +.+...|..+....
T Consensus 76 gd~s~~~LE~~vAe~lG-~e~aV~v~sGTaAl~ll~~l~--v~pGd~V---p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~ 149 (460)
T PRK13237 76 GSRNFYHLEETVQEYYG-FKHVVPTHQGRGAENLLSRIA--IKPGQYV---PGNMYFTTTRYHQELNGGIFVDIIIDEAH 149 (460)
T ss_pred CCCcHHHHHHHHHHHHC-CCeEEEeCCHHHHHHHHHHhC--CCCcCEE---CCccchHhhHHHHHhCCcEEEeeeccccc
Confidence 45567789999999885 457999999999999864433 3455543 444444333 32444444221110
Q ss_pred ----CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEE
Q 017633 105 ----LPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 178 (368)
Q Consensus 105 ----~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li 178 (368)
.....+.. |+++++++++.. +++++.+. +.+++..+|...+..+ ++++.++|++||+.||
T Consensus 150 ~~~~~~p~tgnl-------------D~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~-m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 150 DAQSDHPFKGNV-------------DLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMAN-MRAVRELCDKHGIKVF 215 (460)
T ss_pred ccccCCCCCCCc-------------CHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHh-HHHHHHHHHHcCCEEE
Confidence 00111111 899999999853 23343333 3444433455444334 9999999999999999
Q ss_pred Eehhhh-c---h-hcccC-ccccc-------cCCCcchhh--hhhhccCCccceeeee-hHHHHHHhcCCCCcccc-ccC
Q 017633 179 FDEVMT-G---F-RLAYG-GAQEY-------FGVTPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQA-GTL 241 (368)
Q Consensus 179 ~De~~~-~---~-~~g~~-~~~~~-------~~~~~di~s--~sK~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~-~t~ 241 (368)
.|.++. + | ...+. +.-.. ..-..|.++ ++|.++++. .|+++. ++++++.++.....+-+ .|+
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~~ty 294 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGMPSY 294 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCCcCC
Confidence 999983 2 2 11111 00000 111235554 447776432 356655 67788877753322222 233
Q ss_pred CCC-HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC--CCcccchhccccc
Q 017633 242 SGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG--PVYNFEDAKKSET 318 (368)
Q Consensus 242 ~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 318 (368)
++- .--+.+...++....++++.++.....+++.++|.+ .|.+...+..|+-+.++...- .+.. ..
T Consensus 295 gg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~----~Gvpv~~p~ggH~v~vda~~~lph~~~-------~~ 363 (460)
T PRK13237 295 GGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLA----AGVPIVEPVGGHAVFLDARRFLPHLPQ-------DQ 363 (460)
T ss_pred CChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHH----CCCceecCCCceEEEEEhHHhCCCCCc-------cc
Confidence 322 112333333444333345666666667777766666 566655566666556654431 1111 11
Q ss_pred HHHHHHHHHHH-HcCeeecCC------CCC-----------ccc---cccCCCHHHHHHHHHHHHHHHh
Q 017633 319 TKFARFYRGML-EEGVYFAPS------QFE-----------AGF---TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 319 ~~~~~~~~~l~-~~Gi~~~~~------~~~-----------~~~---~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
--+..++..|- +.||....- .++ .+| +.-.-|.++++...++|..+.+
T Consensus 364 ~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 364 FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 11456666664 446544321 111 012 2334478999999999988764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-13 Score=123.33 Aligned_cols=311 Identities=12% Similarity=0.053 Sum_probs=177.0
Q ss_pred CChhHHHHHHHHHhhCCCC--------CeEEEeCChHHHHHHHHHHHHHhc-------C-CceEEEEcCCCCCCchhhhh
Q 017633 31 PCLLENVLAEMVISAVPSI--------EMVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 94 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~--------~~v~~~~~gt~a~~~al~~~~~~~-------~-~~~vi~~~~~~~~~~~~~~~ 94 (368)
.++.+.++.+++++.++-+ ...++++|||+|+..++.++|... + ...++......|.+...++.
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 3477888999999988622 247889999999999998887531 1 23355556666888787777
Q ss_pred hcCCCc---cccCCCCC-C-CCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 95 KAGSGV---ATLGLPDS-P-GVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 95 ~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
..|-+. ...+.... . .+ |+++|++.+.+. ...+.+++..-...++|.+-| +++|
T Consensus 200 ~lGlg~~~v~~Vp~d~~~~~~m--------------d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI 261 (490)
T PLN02880 200 IAGIHPENCRLLKTDSSTNYAL--------------APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLEL 261 (490)
T ss_pred HcCCCHHHEEEeecCCCcCCcC--------------CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHH
Confidence 776642 22222211 1 12 899999999742 123556666555556787777 9999
Q ss_pred HHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehH--HHHHHhcCCCCccc---
Q 017633 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR--DIMEMVAPAGPMYQ--- 237 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~--~~~~~~~~~~~~~~--- 237 (368)
+++|++||+++++|.+|.++ .....+-....++ .+|-++ .-|.+...+.+|.+++++ .+.+.+.....+..
T Consensus 262 ~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~ 341 (490)
T PLN02880 262 GKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKA 341 (490)
T ss_pred HHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcc
Confidence 99999999999999999765 2211111111232 345444 459998888999987753 23333322111100
Q ss_pred --------cccCC---CCHHHHHHHHHHHHHHccCCHHHHHH---HHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 238 --------AGTLS---GNPLAMTAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 238 --------~~t~~---~~~~~~~a~~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
...++ +...........++.+..+++.+++. +.++++.+.+++. .++....+....++.|.+.
T Consensus 342 ~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~---~~~el~~~~~~~iv~Fr~~ 418 (490)
T PLN02880 342 SQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD---SRFEVVTPRIFSLVCFRLV 418 (490)
T ss_pred ccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEecCCceEEEEEEEe
Confidence 00011 01112333444556555555555555 5666665555442 1222222233345555543
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcC-eeecCC---CCCcccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~~~~~---~~~~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+..... . .......++.+.|.+.| +++... +...+|+ +..++++|++.+++.|.++..+
T Consensus 419 ~~~~~~-~----~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 419 PPKNNE-D----NGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred CCCCCh-h----hHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 211000 0 00111245666666665 444432 2233343 4566889999999999887654
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=116.92 Aligned_cols=311 Identities=13% Similarity=0.061 Sum_probs=165.2
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++...+|.+.++++++ .+.+++++||+.|++++..+ ..+++|.| .+..|+..+.+.....|..+.........+
T Consensus 69 g~~s~~~lE~~va~~~G-~~~av~v~sGT~Al~ll~~l--~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~ 143 (450)
T TIGR02618 69 GSRNFYHLERTVRELYG-FKYVVPTHQGRGAENLLSQI--AIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHD 143 (450)
T ss_pred CCCcHHHHHHHHHHHHC-CCeEEEcCCHHHHHHHHHHh--CCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccc
Confidence 45667899999999885 45799999999998875432 23456654 333333444443454444222110010000
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc---
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--- 185 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~-~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--- 185 (368)
.. ... + .... -|+++++++++.. ..+++.+.++..++. +|..++ .+.++++.++|++||+.||.|.++..
T Consensus 144 ~~-~~~-p-~~Gn-iD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs-~~~l~~I~elA~~~Gl~vi~DaAR~~gNA 218 (450)
T TIGR02618 144 AQ-LNI-P-FKGN-VDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVS-MANMREVRELCEAHGIKVFYDATRCVENA 218 (450)
T ss_pred cc-cCC-C-CCCC-cCHHHHHHHhccccCcccCceEEEEecccCCCeeCC-HHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence 00 000 0 0000 1899999999852 223444444444444 455444 44499999999999999999988842
Q ss_pred -h-hcccCccccccCCC-----------cchhhhhhhcc-CCccceeeee--hHHHHHHhcCCCCcccc-ccCCC-CHHH
Q 017633 186 -F-RLAYGGAQEYFGVT-----------PDLTTLGKIIG-GGLPVGAYGG--RRDIMEMVAPAGPMYQA-GTLSG-NPLA 247 (368)
Q Consensus 186 -~-~~g~~~~~~~~~~~-----------~di~s~sK~~~-~G~~iG~v~~--~~~~~~~~~~~~~~~~~-~t~~~-~~~~ 247 (368)
| ...+.. +.+.. .|.+++| +.- ++.++|.+++ ++++++..+.....+-+ .++++ ..-.
T Consensus 219 ~~I~~re~g---~~~~~i~ei~~e~~~~aD~~~~S-~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~ 294 (450)
T TIGR02618 219 YFIKEREQG---YEDKSIAEILKEMMSYADGCTMS-GKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRD 294 (450)
T ss_pred hhhhccccc---ccCCCHHHHHHHHhccCcEEEEe-eccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhh
Confidence 1 110100 11211 2343333 332 3346666544 67888777643222111 12222 2223
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC--CCcccchhcccccHHHHHHH
Q 017633 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG--PVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 248 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 325 (368)
+.+...+++...+..+.++.....++|.+.|.+. +++...+..++.+.++...- .+.. ..--+..++
T Consensus 295 ~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~----Gvpv~~p~ggh~V~vda~~~lph~~~-------~~~p~~al~ 363 (450)
T TIGR02618 295 MEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA----GVPIVEPVGGHAVFLDARRFLPHIPQ-------DQFPAQSLA 363 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC----CCcccCCCCcceEEEEhHHhCCCCCh-------hhChHHHHH
Confidence 3333344543333455666666677777777774 55544456677777776541 1111 111145666
Q ss_pred HHHH-HcCeeecCC------CCC-----------ccc---cccCCCHHHHHHHHHHHHHHHh
Q 017633 326 RGML-EEGVYFAPS------QFE-----------AGF---TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 326 ~~l~-~~Gi~~~~~------~~~-----------~~~---~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..|- +.||.-..- .++ .+| +.-.-|.++++...+++..+.+
T Consensus 364 ~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 364 ASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred HHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 6664 445544331 111 012 2334478999999999988764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-15 Score=131.93 Aligned_cols=231 Identities=15% Similarity=0.130 Sum_probs=145.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccC-CCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDS 108 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 108 (368)
.+.....+..+..++.|+.....++++|.|.++..++..+ ..++|.|++ +.+.|.+...++.+.|...++.. ....
T Consensus 63 ~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~--~~~gd~VLv-~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 63 DPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMAL--CRPGDKVLV-DRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp TTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHH--TTTTCEEEE-ETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred CCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHh--cCCCCEEEE-cCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 3566778888888888875556667776667777777665 245655554 77899999988888877543221 1111
Q ss_pred CCCCCCCCCcccccCC--CCHHHHHHHHHcCCCCeE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh
Q 017633 109 PGVPKGATYETLTAPF--NDVSALENLFENNKGEIA---AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 183 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~--~d~~~le~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~ 183 (368)
.++. -.++. -+.+.++++++++++..+ ++++.|.+ .|...+ +++|+++|++++.+|++||||
T Consensus 140 ~gi~-------~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAh 206 (417)
T PF01276_consen 140 YGII-------GGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAH 206 (417)
T ss_dssp TS-B-------EEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT
T ss_pred cCCc-------cCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccc
Confidence 1111 11111 035899999999877666 78888877 688888 999999999999999999999
Q ss_pred hc-hhcccCccccccCCCcc-------hhhhh--hhccCCc-cceeeeehHHH---HHHhcCCCCccccccCCCCHHHHH
Q 017633 184 TG-FRLAYGGAQEYFGVTPD-------LTTLG--KIIGGGL-PVGAYGGRRDI---MEMVAPAGPMYQAGTLSGNPLAMT 249 (368)
Q Consensus 184 ~~-~~~g~~~~~~~~~~~~d-------i~s~s--K~~~~G~-~iG~v~~~~~~---~~~~~~~~~~~~~~t~~~~~~~~~ 249 (368)
.. +... .+.........| +++.| |.++ ++ ..+++..+... .+.+.. .+....|.+++.+-++
T Consensus 207 Gah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~-altQts~lh~~~~~~v~~~~~~~--~l~~~~TTSPSY~lmA 282 (417)
T PF01276_consen 207 GAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDRIVDHERVNE--ALSMHQTTSPSYPLMA 282 (417)
T ss_dssp -TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCCCTTHHHHHH--HHHHHS-SS--HHHHH
T ss_pred cccccCC-CCccchhhccCccccccceeeeechhhccc-ccccceEEEecCCCcccHHHHHH--HHHHHcCCChHHHHHH
Confidence 43 3222 222334455566 66555 7775 44 45566554331 233331 2234566688999999
Q ss_pred HHHHHHHHH-cc--CCHHHHHHHHHHHHHHHHHH
Q 017633 250 AGIHTLKRL-KE--PGTYEYLNKITGELTQGIID 280 (368)
Q Consensus 250 a~~~~l~~~-~~--~~~~~~~~~~~~~l~~~l~~ 280 (368)
....+.+++ .. ..+.++..++.+.+|+++++
T Consensus 283 SlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 283 SLDVARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 988888888 33 34778888999999999966
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-12 Score=116.25 Aligned_cols=310 Identities=11% Similarity=0.007 Sum_probs=173.7
Q ss_pred ChhHHHHHHHHHhhCCCC--------CeEEEeCChHHHHHHHHHHHHHhc-------C-CceEEEEcCCCCCCchhhhhh
Q 017633 32 CLLENVLAEMVISAVPSI--------EMVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLVK 95 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~--------~~v~~~~~gt~a~~~al~~~~~~~-------~-~~~vi~~~~~~~~~~~~~~~~ 95 (368)
.+.+.++.++++++++-+ ..-++++|||+|+..++.++|... + .+-++......|-+...++.+
T Consensus 169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~i 248 (539)
T PLN02590 169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLI 248 (539)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHH
Confidence 467888889999988722 347789999999999998887531 1 223555566667777777776
Q ss_pred cCCC---ccccCCCCC--CCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 96 AGSG---VATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 96 ~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
.|.+ +...+.... ..+ |+++|++.|.+. ...+.+|+..-...++|.+-| +++|+
T Consensus 249 lGlg~~~vr~Vp~d~~~~~~m--------------d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia 310 (539)
T PLN02590 249 GGIHEENIRLLKTDSSTNYGM--------------PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLG 310 (539)
T ss_pred cCCCcccEEEEeCCCCCCCcC--------------CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHH
Confidence 6553 222222211 112 899999999752 123445555554455677666 99999
Q ss_pred HHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehH--HHHHHhcCCCCcc-----
Q 017633 168 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR--DIMEMVAPAGPMY----- 236 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~--~~~~~~~~~~~~~----- 236 (368)
++|++||+||+||.+|.|+ ........-..++ ..|-++ .-|.+...+.+|.+++++ .+.+.+.....+.
T Consensus 311 ~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~ 390 (539)
T PLN02590 311 NIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVS 390 (539)
T ss_pred HHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccc
Confidence 9999999999999999775 2111100001122 123333 349998888999887754 2333332111100
Q ss_pred ------ccc--cCCC-CHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 237 ------QAG--TLSG-NPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 237 ------~~~--t~~~-~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
... +... -.......+.+++.+..+++ +++..+.++++.+.+++. ..+....+..-.++.|.+.+
T Consensus 391 ~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~---~~fel~~~~~l~iVcFr~~~ 467 (539)
T PLN02590 391 KKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD---PSFEVVTTRYFSLVCFRLAP 467 (539)
T ss_pred ccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCceEEEEEEecC
Confidence 000 1111 12345555566666655554 344445555555544432 12322222223344444432
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCee-ecCC---CCCcccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-~~~~---~~~~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...... .......++.+.|.+.|.. +.+. +...+|+ +..++++|++.+++.|.+...+
T Consensus 468 ~~~~~~-----~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 468 VDGDED-----QCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred CCCCHH-----HHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 110000 0012235677777777744 4432 2233333 5667999999999999987654
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=117.20 Aligned_cols=310 Identities=15% Similarity=0.033 Sum_probs=172.7
Q ss_pred CcHHHHHHHHHHHHcC--CC---CCCC------ChhHHHHHHHHHhhCC--CCCeEEEeCC-hHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKG--TS---FGAP------CLLENVLAEMVISAVP--SIEMVRFVNS-GTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~--~~---~~~~------~~~~~~l~~~l~~~~~--~~~~v~~~~~-gt~a~~~al~~~~~~~~~ 75 (368)
.+++|++++.+.+.+. .+ +... .+...+.++.++++++ ..+.++|++| ||++++.++..... +.+
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~-~~~ 88 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG-DKG 88 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-CCC
Confidence 5678999999887431 11 1111 2567888999999987 4567888877 99999999965522 112
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCC-HHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
....+..+.|...........|..+.....+.... +.+ .+..+..++ ++++.+.+..+.+.+|
T Consensus 89 ~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG 152 (355)
T cd00611 89 TADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGK-------------YTKIPDVETWDLA---PDAAYVHYCSNETIHG 152 (355)
T ss_pred eEEEEECCHHHHHHHHHHHhcCCCcEEEecccccC-------------CCCCCCHhhcCCC---CCCCEEEEeCCccccc
Confidence 12222233332211111122232222111110000 102 122222233 4677777777777777
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
...+ ++++.||+++++|-+++- .+....++.+++ ++.+--|.+| ..++|++++++++.+.+....+
T Consensus 153 ~~~~---------~i~~~~g~~~~VDa~qs~--g~~~idv~~~~~--~~ss~~K~lG-P~G~g~l~~~~~~~~~~~~~~~ 218 (355)
T cd00611 153 VEFD---------EVPDTGGVPLVADMSSNI--LSRPIDVSKFGV--IYAGAQKNLG-PAGVTVVIVRKDLLGKARKITP 218 (355)
T ss_pred EEcc---------eecccCCCeEEEEccccc--cCCCCCHHHhCE--EEeecccccC-CCceEEEEECHHHHhhcccCCC
Confidence 6532 345569999999999951 122344444442 4434569885 4578999999988876553211
Q ss_pred -cc-------ccc-cCCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhc-CCceEE---eecc-ceEE
Q 017633 235 -MY-------QAG-TLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKA-GHAICG---GYIS-GMFG 299 (368)
Q Consensus 235 -~~-------~~~-t~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~---~~~~-~~~~ 299 (368)
.. ... ..++|....++..++++.+.+. ++ +.+.++.+.+.+.+.+.+.+. ++.... .... ..+.
T Consensus 219 ~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~-e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvs 297 (355)
T cd00611 219 SMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGV-EAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVP 297 (355)
T ss_pred CcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEE
Confidence 00 011 2355667888888999988765 43 455555555555555544444 221010 1112 3345
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC--CCcccc--ccCCCHHHHHHHHHHHHHH
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~~~~--~~~~~~~~i~~~~~~l~~~ 364 (368)
|.+.. .....++.+.+.++|+....+. ...+|+ ..+++++|++++++.|+++
T Consensus 298 f~~~~-------------~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 298 FRLGK-------------EELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred EEcCC-------------hhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 54321 1122555578888999855543 234555 4566999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-13 Score=113.94 Aligned_cols=299 Identities=16% Similarity=0.139 Sum_probs=169.8
Q ss_pred CCCCCCChhHHHHHHHHHhhCCC---------CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhc
Q 017633 26 TSFGAPCLLENVLAEMVISAVPS---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 96 (368)
Q Consensus 26 ~~~~~~~~~~~~l~~~l~~~~~~---------~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 96 (368)
+..+.+.+...++.+...++.-+ --..+-|.|||-|+..+......+.++..|.+.++++..+. ......
T Consensus 62 ~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~-~If~~a 140 (396)
T COG1448 62 TKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHK-AIFEAA 140 (396)
T ss_pred ccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH-HHHHhc
Confidence 34566778888888888887532 12456788999999999976666667777888888776554 444444
Q ss_pred CCCc-cccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 017633 97 GSGV-ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 175 (368)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~ 175 (368)
|-++ .++++....... |.+.+-..+++.+++..+++-.+-+|++| +-++.+++++|.++.++.+.
T Consensus 141 Gl~v~~Y~Yyd~~~~~~-------------df~~mla~L~~a~~~~vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~l 206 (396)
T COG1448 141 GLEVETYPYYDAETKGL-------------DFDGMLADLKTAPEGSVVLLHGCCHNPTG-IDPTEEQWQELADLIKERGL 206 (396)
T ss_pred CCceeeeeccccccccc-------------cHHHHHHHHHhCCCCCEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCC
Confidence 4444 233232222211 78888777876544444444444444444 56677779999999999999
Q ss_pred EEEEehhhhchhcccCcccccc------CCCcch---hhhhhhcc-CCccceee-ee--hHHHHHHhcC-CCCccccccC
Q 017633 176 LLIFDEVMTGFRLAYGGAQEYF------GVTPDL---TTLGKIIG-GGLPVGAY-GG--RRDIMEMVAP-AGPMYQAGTL 241 (368)
Q Consensus 176 ~li~De~~~~~~~g~~~~~~~~------~~~~di---~s~sK~~~-~G~~iG~v-~~--~~~~~~~~~~-~~~~~~~~t~ 241 (368)
+-++|=+|.||..| ..-+.+ ...+.+ .||||.|+ =|-|+|.. ++ +++....+.. ...... .+|
T Consensus 207 ip~~D~AYQGF~~G--leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR-~~y 283 (396)
T COG1448 207 IPFFDIAYQGFADG--LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIR-TNY 283 (396)
T ss_pred eeeeehhhhhhccc--hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHH-hcc
Confidence 99999999998322 111222 222322 47999999 48899986 33 3333333221 111111 333
Q ss_pred CC-CHHHHHHHHHHHH--HHc-----c-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 242 SG-NPLAMTAGIHTLK--RLK-----E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 242 ~~-~~~~~~a~~~~l~--~~~-----~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
+. +..++......|+ .+. + +++++++.+.++.+.+.|++......+. .+....+|+.+.
T Consensus 284 SnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~-~i~~Q~GMFsy~----------- 351 (396)
T COG1448 284 SNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFD-FIISQRGMFSYT----------- 351 (396)
T ss_pred CCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc-hHhhcCceeecC-----------
Confidence 32 2333333222221 010 0 2234445555555555555432222122 222223333321
Q ss_pred hcccccHHHHHHHHHHH-HcCeeecCCCCCccccc-cCCCHHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTS-LAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~-~~~~~~~i~~~~~~l~~~ 364 (368)
+- ..+=..+|+ +.||++...| |++ ..+++..++.++++|.++
T Consensus 352 -----Gl-s~~QV~rLree~~IY~v~sG----Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 352 -----GL-SPEQVDRLREEFGIYLVASG----RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred -----CC-CHHHHHHHHHhccEEEecCC----eeeeccCChhhHHHHHHHHHhh
Confidence 00 123345555 5699998876 432 456889999999998875
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-14 Score=122.30 Aligned_cols=215 Identities=13% Similarity=0.093 Sum_probs=148.7
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++....+...++++.+. ..+++.+||+.|...++.... +.++.++.....|.|.....-... .
T Consensus 75 ~nPt~~~le~~iaal~ga-~~~l~fsSGmaA~~~al~~L~--~~g~~iV~~~~~Y~gT~~~l~~~~-~------------ 138 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEGA-AHALLFSSGMAAITVALLHLL--PAGDHIVATGDVYGGTLRILRKFL-P------------ 138 (409)
T ss_pred CCCchHHHHHHHHHHhCC-ceEEEecccHHHHHHHHHHhc--CCCCcEEEeCCCcccHHHHHHHHH-H------------
Confidence 356677888888887754 457778899999999997663 678899999988888643322221 1
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
..+.....++.+|++++++.++ ++++++++|++.|+...+.+ +++++++|+++|+++|+|++..+
T Consensus 139 ---~~gie~~~vd~~~~~~~~~~i~---~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~----- 203 (409)
T KOG0053|consen 139 ---KFGGEGDFVDVDDLKKILKAIK---ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGS----- 203 (409)
T ss_pred ---HhCceeeeechhhHHHHHHhhc---cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCc-----
Confidence 1222344444445666666666 57999999999998888888 99999999999999999999863
Q ss_pred CccccccCCCcchh--hhhhhccCC--ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~G--~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
....+.+.+..|++ |.+|.++|. .-.|.++.+ +++.+.+.. ....-.+..++..+......++.+ .=..+
T Consensus 204 p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~---~~~~lg~~~~p~~~~ll~Rglktl--~lRi~ 278 (409)
T KOG0053|consen 204 PYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF---LQEDLGWCEDPFDLFLLSRGLKTL--HLRIN 278 (409)
T ss_pred ccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH---HHHHhcCCCCHHHHHHHhcCcchh--hhhHH
Confidence 23455566667876 577999974 566677775 777777662 223344567888888777666644 22344
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDA 281 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~ 281 (368)
+..+++..+.+.|++.
T Consensus 279 ~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 279 KHSENALKIALLLEAH 294 (409)
T ss_pred HHHHHHHHHHHHhhhC
Confidence 4555555556666553
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.1e-12 Score=108.65 Aligned_cols=300 Identities=16% Similarity=0.149 Sum_probs=185.9
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
+...+|.++|.++.+-..-.+--++|+++=...+...+.|. +.+++++.+.+.||...+.....|-.++......
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~ 188 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE 188 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence 35567788888877533445556778888888887777662 3567777788999998888888887765544433
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh----
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM---- 183 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~---- 183 (368)
.-.+ |+++|+++.. ++++++++. ++|+-|. .+++ +.+|+++.+++|..|+.|-+=
T Consensus 189 ~G~V--------------DlddLk~k~~---~~~AalMiT-nPsT~Gv--FE~~-I~ei~~ivH~~Gg~vY~DGANlNA~ 247 (496)
T COG1003 189 NGNV--------------DLDDLRAKAE---DNLAALMIT-NPSTLGV--FEED-IREICEIVHEAGGQVYYDGANLNAI 247 (496)
T ss_pred CCCc--------------cHHHHHHHhc---cceeEEEec-cCccccc--chhh-HHHHHHHHHHcCCEEEecCcchhhh
Confidence 3333 8999999888 467766663 2233342 3333 999999999999999999443
Q ss_pred hch-hcccC-ccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC------CC----------ccccccCCCC
Q 017633 184 TGF-RLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA------GP----------MYQAGTLSGN 244 (368)
Q Consensus 184 ~~~-~~g~~-~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~------~~----------~~~~~t~~~~ 244 (368)
.|. +.|.. +...++++. =||+-.-| ||-..|-|.+..+++..+-.. .. ......+.+|
T Consensus 248 vG~~rPGd~G~DV~HlNLH---KTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs 324 (496)
T COG1003 248 VGLARPGDMGFDVVHLNLH---KTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGS 324 (496)
T ss_pred hccccccccccceEEeecc---cccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCc
Confidence 333 33332 111222211 03444444 458999999999888776531 11 0112334455
Q ss_pred HHHHHHHHHHHHHHccCCHH---HHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCcccchhcccccHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTY---EYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
......++.-+..+..+++. +...-++.|+..+|+.. ++.+.... ...+-+.++.+. .+...+..
T Consensus 325 ~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~---y~~~y~~~~~~~HE~ild~r~--------l~~~~Gv~ 393 (496)
T COG1003 325 ASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY---YPVPYTGENRVAHECILDARP--------LKKETGVR 393 (496)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc---CccccCCCCcceeEEEeechH--------hHhhcCCc
Confidence 55556666666666655543 34556777777777763 22211100 011222222221 01113455
Q ss_pred HHHHHHHHHHcCeeecCCCCCcc-------ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLEEGVYFAPSQFEAG-------FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~~~-------~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++++|++.|++--...+|.+ -+.-.-+.+++|++++++.++.++
T Consensus 394 ~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 394 ALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred HHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999888877743 123455889999999999988754
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=122.41 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhhCC-CC-C-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhc---CCCccccCCC
Q 017633 33 LLENVLAEMVISAVP-SI-E-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA---GSGVATLGLP 106 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~~-~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 106 (368)
+..++.++.+++.++ +. + .|+||+|+|+|+..+.... .+.+++.|++. ...|.+........ |..+.....+
T Consensus 78 ~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l-~~~~gd~Iv~t-~~eH~svl~~~~~a~~~G~~v~~v~~~ 155 (805)
T PLN02724 78 DTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETF-PWSSESHFCYT-LENHNSVLGIREYALEKGAAAIAVDIE 155 (805)
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHC-CCCCCCeEEEe-eccccchHHHHHHHHHcCCeEEeccch
Confidence 467788899999987 44 3 5899999999999887543 23456777774 45555555444322 2222221111
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHH----c---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh------
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFE----N---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN------ 173 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~----~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~------ 173 (368)
...+.... ....+.. +.+++++.++ . ..++++++.+...++.+|.+.| ++++..+++..
T Consensus 156 ~~~~~~~~---~~g~~~~-~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~ 227 (805)
T PLN02724 156 EAANQPTN---SQGSVVV-KSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSK 227 (805)
T ss_pred hccccccc---ccccccc-chhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhccccccc
Confidence 00000000 0000000 1245555532 1 1245678888888888999999 77665544432
Q ss_pred --CCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCC----CCc--------c-
Q 017633 174 --GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPA----GPM--------Y- 236 (368)
Q Consensus 174 --~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~----~~~--------~- 236 (368)
++++++|.+|+ .|.. ..+--...+|++++| |.+++..++|++++++++.+.+... +.. +
T Consensus 228 ~g~~~v~vDaaQ~---~g~~-piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~ 303 (805)
T PLN02724 228 SGRWMVLLDAAKG---CGTS-PPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFV 303 (805)
T ss_pred CcceEEEeehhhh---cCCC-CCChhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEeccccee
Confidence 35799999995 2221 222233456887776 9887556799999888776655421 110 0
Q ss_pred --------ccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcC--CceEE---------eec
Q 017633 237 --------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG--HAICG---------GYI 294 (368)
Q Consensus 237 --------~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~---------~~~ 294 (368)
..-.-+.|..+.+++.++++.+.+ +...++..+..+++.+.|.++....+ ..... ...
T Consensus 304 ~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r 383 (805)
T PLN02724 304 KRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQ 383 (805)
T ss_pred eccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccc
Confidence 000114567777777788888765 33455666666666666665421111 11111 124
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC---------------------------------
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--------------------------------- 341 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--------------------------------- 341 (368)
++++.|.+..... ......++...+.++||.++.|..+
T Consensus 384 ~~ivsFnv~~~~~---------~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~ 454 (805)
T PLN02724 384 GPIVTFNLKRADG---------SWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVI 454 (805)
T ss_pred cCEEEEEEEcCCC---------CEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhhee
Confidence 5677777654221 1111233444445568888765221
Q ss_pred ------ccc--cccCCCHHHHHHHHHHHHHHH
Q 017633 342 ------AGF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 342 ------~~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+| +.++.|.+|++++++.|++..
T Consensus 455 ~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 455 HGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred cCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 123 346779999999999999864
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-11 Score=116.35 Aligned_cols=308 Identities=16% Similarity=0.091 Sum_probs=166.5
Q ss_pred ChhHHHHHHHHHhhCCC--------------CCeEEEeCChHHHHHHHHHHHHHhc--C---------------------
Q 017633 32 CLLENVLAEMVISAVPS--------------IEMVRFVNSGTEACMGVLRLARAFT--G--------------------- 74 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~--------------~~~v~~~~~gt~a~~~al~~~~~~~--~--------------------- 74 (368)
++.+..+.+++++.+.+ .....+++|||+|+..|+.++|... .
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 46778888888887631 1346789999999999998887531 0
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCC---ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcc
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEP 148 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~ 148 (368)
.+.+|+....-|.+...+....|.+ +...+......+ |+++|++.+++ ...++.+++...
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~--------------d~~~L~~~i~~~~~~g~~~~~vvata 273 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRI--------------DVDALRDKCAELAEQNIKPLAIVGVA 273 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcC--------------CHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 1235666667777666555554442 222112111111 89999999874 112233444444
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhhhh--hhccCCccceeeeeh-H
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGGR-R 223 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s~s--K~~~~G~~iG~v~~~-~ 223 (368)
..+.+|.+.| +++|+++|++||+++++|.+|.+. .....+....-++ ..|.++++ |.+.+...+|.++.+ +
T Consensus 274 Gtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~ 349 (522)
T TIGR03799 274 GTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP 349 (522)
T ss_pred cCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH
Confidence 4456788888 999999999999999999999754 1111000001233 45777666 988877889998775 4
Q ss_pred HHHHHhcCCCCccc--------cccCCCCH-HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 017633 224 DIMEMVAPAGPMYQ--------AGTLSGNP-LAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICG 291 (368)
Q Consensus 224 ~~~~~~~~~~~~~~--------~~t~~~~~-~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 291 (368)
++.+.+.....+.. ..++.++. ........+++.+..++ +.++..++++++.+.|++. .++....
T Consensus 350 ~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~---~~~el~~ 426 (522)
T TIGR03799 350 ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ---PDFELVT 426 (522)
T ss_pred HHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEEec
Confidence 55555443211100 01111221 11224567777776544 3444445555555554432 1232222
Q ss_pred eeccceEEEEeecCCCcccchhcc-------c--ccHHHHHHHHHHHHcCeeecC-C--------CCC--cccc---ccC
Q 017633 292 GYISGMFGFFFTEGPVYNFEDAKK-------S--ETTKFARFYRGMLEEGVYFAP-S--------QFE--AGFT---SLA 348 (368)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~l~~~Gi~~~~-~--------~~~--~~~~---~~~ 348 (368)
...-.++.|.+.+........... . .......+.+.+.+.|..+.. . +.+ .+|+ +..
T Consensus 427 ~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~ 506 (522)
T TIGR03799 427 EPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPL 506 (522)
T ss_pred CCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCC
Confidence 233345555543321110000000 0 011124666777777744432 1 111 1232 556
Q ss_pred CCHHHHHHHHHH
Q 017633 349 HSSDDIQHTITA 360 (368)
Q Consensus 349 ~~~~~i~~~~~~ 360 (368)
+++++++.+++.
T Consensus 507 tt~~~i~~~l~~ 518 (522)
T TIGR03799 507 TTHEILQDILDE 518 (522)
T ss_pred CCHHHHHHHHHH
Confidence 788999887764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-11 Score=108.43 Aligned_cols=269 Identities=17% Similarity=0.075 Sum_probs=155.1
Q ss_pred eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhh--------cCCCccccCCC--CCCCCCCCCCCccc
Q 017633 51 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK--------AGSGVATLGLP--DSPGVPKGATYETL 120 (368)
Q Consensus 51 ~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~ 120 (368)
.|.. .||+.|+..++..+ ..++|.|+..+..+.|+....... .+..+...+|. ...+..
T Consensus 217 NVQp-~SGs~AN~aV~~AL--l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~I-------- 285 (586)
T PLN02271 217 NVQP-YSCTSANFAVYTGL--LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYI-------- 285 (586)
T ss_pred ceee-ccHHHHHHHHHHHh--cCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCcc--------
Confidence 3444 48999999999666 467899999988887775543211 11111111111 111111
Q ss_pred ccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccC
Q 017633 121 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFG 198 (368)
Q Consensus 121 ~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~ 198 (368)
|.+++++.... .+++++++...... ...+ +++++++|+++|++|++|-+| .|+ ..+.. . ....
T Consensus 286 -----Dyd~lek~a~~--~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~-sP~~ 350 (586)
T PLN02271 286 -----DYDKLEEKALD--FRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAKEC-V-NPFD 350 (586)
T ss_pred -----CHHHHHHHhhh--cCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccCcC-C-CCCc
Confidence 89999986554 47888888664433 3455 999999999999999999999 555 22211 0 0111
Q ss_pred CCcchhhhh--hhccCCccceeeeehHH--------------------HHHHhcCCC-CccccccCCCCHHHHHHHHHHH
Q 017633 199 VTPDLTTLG--KIIGGGLPVGAYGGRRD--------------------IMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTL 255 (368)
Q Consensus 199 ~~~di~s~s--K~~~~G~~iG~v~~~~~--------------------~~~~~~~~~-~~~~~~t~~~~~~~~~a~~~~l 255 (368)
..|+++++ |++.|. |.|.++.+++ +.+.+...- +..+++ +....+++...++
T Consensus 351 -~aDvvt~TTHKtLrGP-rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgG---phn~~IAalAval 425 (586)
T PLN02271 351 -YCDIVTSTTHKSLRGP-RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGG---PHNNHIAALAIAL 425 (586)
T ss_pred -CCcEEEeCCcccCCCC-CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccC---hhHHHHHHHHHHH
Confidence 25776554 998653 4477776653 333333211 122222 1223355555666
Q ss_pred HHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 256 KRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 256 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+.....+ +.+.+.++++.+.+.|.+ .++..... ...+++++++... ..++....+.|-+.
T Consensus 426 kea~~~efk~Ya~QVv~NAkaLA~~L~~----~G~~vv~ggTdnHlvLvDl~~~------------g~~G~~ae~~Le~~ 489 (586)
T PLN02271 426 KQVATPEYKAYMQQVKKNAQALASALLR----RKCRLVTGGTDNHLLLWDLTTL------------GLTGKNYEKVCEMC 489 (586)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHH----CCCeEeeCCCCcceeeecCccc------------CCCHHHHHHHHHHc
Confidence 6655444 455566666666666655 34432222 2234667776432 12245666777777
Q ss_pred CeeecCCC---C------Ccccc------ccCCCHHHHHHHHHHHHHHHh
Q 017633 332 GVYFAPSQ---F------EAGFT------SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 332 Gi~~~~~~---~------~~~~~------~~~~~~~~i~~~~~~l~~~l~ 366 (368)
||.+.... + ..+|+ +..+.++|++++.+.|.+++.
T Consensus 490 ~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 490 HITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 88884421 1 11232 356678888888888877764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-11 Score=101.64 Aligned_cols=310 Identities=16% Similarity=0.138 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHHHc-C------CCCCCCC----hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKK-G------TSFGAPC----LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~------~~~~~~~----~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+|.|+++....+.+ . ..||..+ +.+.-..++..++|+ +..+|. ..||++|+..++... ..++|.
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQ-PhSGs~AN~av~~Al--l~pGDt 114 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQ-PHSGSQANQAVYLAL--LQPGDT 114 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccC-CCCchHHHHHHHHHH--cCCCCe
Confidence 467788887766655 1 1233333 334444445555666 444444 457999999998766 357899
Q ss_pred EEEEcCCCCCCchhh--hhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 78 IIKFEGCYHGHADPF--LVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 78 vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
|+..+-+..|+.... ....|.-....+|+. ..... |.|++++.+.++ +++++++=. +..
T Consensus 115 imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~I-------------DyD~~~k~a~e~--kPK~ii~G~--SaY 177 (413)
T COG0112 115 IMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLI-------------DYDEVEKLAKEV--KPKLIIAGG--SAY 177 (413)
T ss_pred EecccCCCCCcccCCCCCCccceeEEeEecccccccCcc-------------CHHHHHHHHHHh--CCCEEEECc--ccc
Confidence 999887777765433 222222222222211 11111 899999999976 677777633 333
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeeeh-HHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEM 228 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~-~~~~~~ 228 (368)
-...+ +++++++|++.|..|++|-+| +|+ -.|.+- +.... .|++|-| |+|. |.|-|.++++ +++.+.
T Consensus 178 ~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p--~P~~~-AdvVTtTTHKTlr-GPrGG~Il~~~eel~kk 249 (413)
T COG0112 178 SRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVHP--NPLPH-ADVVTTTTHKTLR-GPRGGIILTNDEELAKK 249 (413)
T ss_pred ccccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccCC--CCCCc-cceEeCCcccCCC-CCCceEEEeccHHHHHH
Confidence 44566 999999999999999999999 777 433321 12222 4666544 8885 5588888887 488888
Q ss_pred hcCC-CCccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEee
Q 017633 229 VAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFT 303 (368)
Q Consensus 229 ~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (368)
+... -+..+++ +....+++-..++....+. ++.+++.++++.+.+.|.+. ++..... ...+++.++++
T Consensus 250 in~aVFPg~qgg---pl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~----G~~vvsGgTdnHl~lVDl~ 322 (413)
T COG0112 250 INSAVFPGLQGG---PLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER----GFKVVSGGTDNHLVLVDLR 322 (413)
T ss_pred hhhhcCCccCCC---hHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc----CCeEecCCccceEEEEEcc
Confidence 8741 1222222 2233343333444433343 35667778888888887773 3221111 22336667765
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc----------ccc------ccCCCHHHHHHHHHHHHHHHh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA----------GFT------SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~----------~~~------~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ....++....|-+.||.+--..-|. +|+ ...+.++|++++-+.|.+++.
T Consensus 323 ~~------------~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~ 389 (413)
T COG0112 323 SK------------GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD 389 (413)
T ss_pred cC------------CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence 21 2224556666667788886542211 222 356688899888888888775
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-11 Score=107.83 Aligned_cols=309 Identities=11% Similarity=-0.011 Sum_probs=182.7
Q ss_pred CcHHHHHHHHHHHHcCC---------CCCC--CChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGT---------SFGA--PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---------~~~~--~~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
-+++|++++.+.+.+.. .+.. ..+...+.++.|.++++ + .+-+++..|||.+++.++..+. .++
T Consensus 18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~--~~~ 95 (365)
T PLN02452 18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC--KPG 95 (365)
T ss_pred CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC--CCC
Confidence 34678888877654311 1111 13567788888888886 2 3456777899999999986552 355
Q ss_pred ceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+++++...+.++....-.... |....... ..... ....+ +++++ +.+ ++...+.+.++...+|
T Consensus 96 ~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~-~~~~~--------~~~~~--~~~~~----~~~-~~~~~v~~~hnETstG 159 (365)
T PLN02452 96 DKADFVVTGSWSKKAAKEAKKYCKTNVIAS-GKDEK--------YTKIP--SVSEW----ELT-PDAKFVHICANETIHG 159 (365)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCCcEEEe-cCCCC--------CCCCC--ChHHc----CCC-CCCcEEEECCCCCCCc
Confidence 677777777777544333322 22111100 00000 01111 44443 222 3567777777777778
Q ss_pred cc-cCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC
Q 017633 155 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 155 ~~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
.. .+ ++++. ++++|+|-+++- .+....++.+++ |+.+..|.+| ..++|.+++++++++......
T Consensus 160 v~~~~----~~~i~------~~~lvVDa~Ss~--g~~pidv~~~~v--~~~saqK~lG-P~Gl~~v~vr~~~l~~~~~~~ 224 (365)
T PLN02452 160 VEFKD----YPDVG------NVPLVADMSSNF--LSKPVDVSKYGV--IYAGAQKNVG-PSGVTIVIIRKDLIGNARPIT 224 (365)
T ss_pred EecCc----ccccC------CCeEEEECCccc--cCcccCHHHcCE--EEEecccccC-CCCeEEEEEcHHHHhhcccCC
Confidence 74 44 55554 289999988851 223445556665 6667779996 335889999999887765322
Q ss_pred Cccc--------ccc-CCCCHHHHHHHHHHHHHHccC-C---HHHHHHHHHHHHHHHHHHHHHhcCCceE-E--e-eccc
Q 017633 234 PMYQ--------AGT-LSGNPLAMTAGIHTLKRLKEP-G---TYEYLNKITGELTQGIIDAGKKAGHAIC-G--G-YISG 296 (368)
Q Consensus 234 ~~~~--------~~t-~~~~~~~~~a~~~~l~~~~~~-~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~--~-~~~~ 296 (368)
+.+. .++ ++++....++..++++.+.++ + +.++.+++.+++++.|.+. .++... . . ....
T Consensus 225 ~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~---~G~y~~~~~~~~rs~~ 301 (365)
T PLN02452 225 PGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDES---NGFYVCPVEKSVRSLM 301 (365)
T ss_pred CchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC---CCcccCCCChHHhCCe
Confidence 2111 122 366777888888999988764 3 3444555555555555442 122101 1 0 1222
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.|.+. ......+|.+.+.++|+...+|... .+|. .-.++.++++.+++.+++.-++
T Consensus 302 ~vsF~~~-------------~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 302 NVPFTLG-------------GSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEEEEcC-------------CchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 3444432 2235688999999999999887422 2444 3456999999999999987543
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.6e-12 Score=118.61 Aligned_cols=314 Identities=11% Similarity=0.013 Sum_probs=177.0
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh-hhhcCCCcccc-CCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVATL-GLPDS 108 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 108 (368)
++....+..+..++.|+.....+++||.|.++..++..+. .++|. |+++.+.|.+.... +.+.|...++. +.-..
T Consensus 172 ~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~--~~Gd~-VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~ 248 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL--TPGDL-VLFDRNNHKSNHHGALIQAGATPVYLETARNP 248 (720)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc--CCCCE-EEeecccHHHHHHHHHHHcCCeEEEeeccccc
Confidence 4556777777788888755667777766777777776552 35554 45688999998864 77776643321 11101
Q ss_pred CCCCCCCCCcccccCCC--CHHHHHHHHHcCC-C-------CeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHhCCEE
Q 017633 109 PGVPKGATYETLTAPFN--DVSALENLFENNK-G-------EIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALL 177 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~--d~~~le~~~~~~~-~-------~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l-~~~~~~~l 177 (368)
.+++ -.++.. +.+.+++++++++ + ...+++.+|.+ .|.... +++|+++ |++++ .|
T Consensus 249 ~Gi~-------g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~l 314 (720)
T PRK13578 249 FGFI-------GGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YI 314 (720)
T ss_pred cCCc-------CCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cE
Confidence 1111 011111 3567999998762 2 23466666665 688888 9999998 68888 99
Q ss_pred EEehhhhch-hcccC---ccccccCCCcc----hhhhh--hhccCCc-cceeeeehHHHH---------HHhcCCCCccc
Q 017633 178 IFDEVMTGF-RLAYG---GAQEYFGVTPD----LTTLG--KIIGGGL-PVGAYGGRRDIM---------EMVAPAGPMYQ 237 (368)
Q Consensus 178 i~De~~~~~-~~g~~---~~~~~~~~~~d----i~s~s--K~~~~G~-~iG~v~~~~~~~---------~~~~~~~~~~~ 237 (368)
++||||.+. ..... +........+| +++.| |.++ ++ ..+++..+...+ +.++. .+..
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~-alTQaS~LHvk~~~i~g~~~~v~~~r~~~--al~m 391 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA-GFSQTSQIHKKDNHIKGQARYCPHKRLNN--AFML 391 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch-hhhhHhhhhcCCcccccccccCCHHHHHH--HHHH
Confidence 999999443 22221 11122345566 66666 7765 34 444555533211 12221 1223
Q ss_pred cccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcC-C-ceEE---------------------
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG-H-AICG--------------------- 291 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~-~-~~~~--------------------- 291 (368)
..|.|++.+-+++...+..++.. ..+.++..+++..+|+.+.+...... + +..+
T Consensus 392 ~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~ 471 (720)
T PRK13578 392 HASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS 471 (720)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence 45557788888887776666653 34667788888888888733321111 0 0000
Q ss_pred -eeccceEE--------EEeecCC--Ccccchh-ccc----ccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHH
Q 017633 292 -GYISGMFG--------FFFTEGP--VYNFEDA-KKS----ETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDD 353 (368)
Q Consensus 292 -~~~~~~~~--------~~~~~~~--~~~~~~~-~~~----~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~ 353 (368)
.+...+.+ +.+...+ +...... ... .+.-+..++++|.++||.+.-.+...+. ++...++++
T Consensus 472 ~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~ 551 (720)
T PRK13578 472 FEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAK 551 (720)
T ss_pred cccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHH
Confidence 00000000 0001100 0000000 000 0011478899998999999877655443 477789999
Q ss_pred HHHHHHHHHHH
Q 017633 354 IQHTITAAEKV 364 (368)
Q Consensus 354 i~~~~~~l~~~ 364 (368)
+++++++|.++
T Consensus 552 ~~~Lv~aL~~f 562 (720)
T PRK13578 552 LQQLVAMLARF 562 (720)
T ss_pred HHHHHHHHHHH
Confidence 99999999866
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-11 Score=102.97 Aligned_cols=296 Identities=13% Similarity=0.094 Sum_probs=163.5
Q ss_pred CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHH-HHHHHHHHh--c---------CCceEEEEcCCCCCCchhhh
Q 017633 27 SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM-GVLRLARAF--T---------GRERIIKFEGCYHGHADPFL 93 (368)
Q Consensus 27 ~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~-~al~~~~~~--~---------~~~~vi~~~~~~~~~~~~~~ 93 (368)
+|+..-+...++++..+++++ +.+++++..+.|-.+. -.+..+..+ . ++-+.+++.++|-.+ ++..
T Consensus 63 NY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRH-Fai~ 141 (425)
T PF12897_consen 63 NYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRH-FAIT 141 (425)
T ss_dssp SS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHH-HHHH
T ss_pred CCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHH-HHHH
Confidence 342345677899999999998 7888888755543322 222222111 1 245688888888654 3444
Q ss_pred hhcCCCccccCCCCCCCCCCCCCCcccccCCC----CHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 94 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
..-|. +-+.+|++ |++.+|++.++. +.+|.++|.|-++|++.+..+.|..++++++
T Consensus 142 E~~Gi-------------------emi~VpM~~dGPDmD~Ve~LV~~D-~svKGiWcVP~ySNPtG~tySde~vrrlA~m 201 (425)
T PF12897_consen 142 EHFGI-------------------EMIPVPMTEDGPDMDMVEELVAED-PSVKGIWCVPKYSNPTGITYSDEVVRRLAAM 201 (425)
T ss_dssp HHCT--------------------EEEEEEEETTEE-HHHHHHHTHTS-TTEEEEEE-SSS-TTT-----HHHHHHHHHS
T ss_pred HhhCc-------------------EEEecCCCCCCCCHHHHHHHHhcC-CccceEEeCCCccCCCCccCCHHHHHHHhcC
Confidence 43333 22333332 899999998764 6899999999999987788888889999999
Q ss_pred -HHHhCCEEEEehhhhch-hccc-C-cc-cc------ccCCCcc----hhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 170 -TKENGALLIFDEVMTGF-RLAY-G-GA-QE------YFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 170 -~~~~~~~li~De~~~~~-~~g~-~-~~-~~------~~~~~~d----i~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+...++.++-|++|.=. ..+. . .. .+ ..| .|| +.|.||---+|.+++++.+++.-++.+..
T Consensus 202 ~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~--- 277 (425)
T PF12897_consen 202 KTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKK--- 277 (425)
T ss_dssp --SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHH---
T ss_pred CcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHH---
Confidence 45689999999999421 1111 0 00 00 111 233 45889988888899999998877666652
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHHHHHHH-------HH-hcCC-ceEEeeccceEEEEee
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKE-P-GTYEYLNKITGELTQGIIDA-------GK-KAGH-AICGGYISGMFGFFFT 303 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~-------~~-~~~~-~~~~~~~~~~~~~~~~ 303 (368)
.....+.+.+-+.|..-. +++.+ + ++..+.++.++.++-++... +. ..+. .+..+..|.|++++..
T Consensus 278 ~~~~~tIgpdKvNQLRHv---rff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~ 354 (425)
T PF12897_consen 278 HLSVQTIGPDKVNQLRHV---RFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVL 354 (425)
T ss_dssp HHHHH-S---HHHHHHHH---HHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEES
T ss_pred HhcCceeCccHHHHHHHH---HHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecC
Confidence 233455566666655533 33334 4 67777777777777665433 22 2232 4556666778888763
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--------ccc-ccCCCHHHHHHHHHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--------GFT-SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--------~~~-~~~~~~~~i~~~~~~l~~~ 364 (368)
+..+.++.+.+.+.||.+.+.|. |+ +|+ +...+.+|++.+++.+.-.
T Consensus 355 --------------~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~c 412 (425)
T PF12897_consen 355 --------------DGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATC 412 (425)
T ss_dssp --------------TT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHH
Confidence 23468899999999999998542 21 354 5677899999998887544
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-11 Score=96.04 Aligned_cols=323 Identities=15% Similarity=0.119 Sum_probs=189.1
Q ss_pred CCcHHHHHHHHHHHHcCCC---------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 9 PSYLQVLAALGETMKKGTS---------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.-+++.++++.+.-+..+. .....++..++.+.+++.+ +.|.+.+|+|+.++-..++...+ +.+..+
T Consensus 28 iLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl-g~D~~R~t~GARe~KfavMhal~---~~gd~v 103 (382)
T COG1103 28 ILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL-GMDEVRVTAGAREAKFAVMHALC---KEGDWV 103 (382)
T ss_pred cCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh-CCceeeecccchhhHHHHHHHhc---cCCCEE
Confidence 3566777777776444221 1123456677777777766 67899999999999988886552 445677
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHH----cCCCCeEEEEEcccCCCCCc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~----~~~~~~~~~~~~~~~~~~g~ 155 (368)
+.++..|-++..+....|..+...+ ..+. +.+.+ +++...+.|. +..+.+++.++..+.++.|+
T Consensus 104 V~D~~aHYttyvAAEragl~v~eVp---~tg~------Pey~i---~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGN 171 (382)
T COG1103 104 VVDSLAHYTTYVAAERAGLNVAEVP---NTGY------PEYKI---TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGN 171 (382)
T ss_pred EEcCcchHHHHHHHHhcCCeEEecC---CCCC------CceEe---cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCC
Confidence 7788888776666666665443221 2221 12222 4555555544 33356788888888899999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhc-CC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVA-PA 232 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~-~~ 232 (368)
+.+ -++++++|+++|++++..-+|+ .|.. ....-...+|++.-| |++++.-|||.+..+++..+.+. ..
T Consensus 172 l~D----akkva~ic~e~gvPlllN~AYt---~Grm-pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S 243 (382)
T COG1103 172 LAD----AKKVAKICREYGVPLLLNCAYT---VGRM-PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS 243 (382)
T ss_pred chh----hHHHHHHHHHcCCceEeeccee---eccc-cccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc
Confidence 888 8999999999999999999996 3432 122334566876555 88886569999999988876643 22
Q ss_pred CC-------ccccccCCC-CHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHH--HhcCCceEEeeccc-eEE
Q 017633 233 GP-------MYQAGTLSG-NPLAMTAGIHTLKRLK-E-PGTYEYLNKITGELTQGIIDAG--KKAGHAICGGYISG-MFG 299 (368)
Q Consensus 233 ~~-------~~~~~t~~~-~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~-~~~ 299 (368)
+. -..+-|..+ +.+.+.| ++-... . ..| +.--++.+.+...|+++. .+++.. +..+ +..
T Consensus 244 g~~~~~KEvellGCT~rGapivTlmA---SfP~V~eRVkrW-deEv~kaR~fv~elEkigg~~qlG~r----Pk~HdLm~ 315 (382)
T COG1103 244 GRAFPKKEVELLGCTVRGAPIVTLMA---SFPHVVERVKRW-DEEVEKARWFVAELEKIGGVKQLGER----PKNHDLMK 315 (382)
T ss_pred ccccccceeeeecccccCchHHHHHh---cCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHhCCC----Ccccceee
Confidence 22 111222222 2222222 332211 1 223 333455667777787764 122211 1111 112
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeee-cCCCCCcccc-ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APSQFEAGFT-SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-~~~~~~~~~~-~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
|+- +. |...........--+++.|+++||.- .+|-...+-+ .+..++|+++..+++++++++++
T Consensus 316 Fet--p~---f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 316 FET--PV---FHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred ecC--ch---HHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 211 00 00000000000123567788888653 3443333333 46789999999999999998763
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-11 Score=107.77 Aligned_cols=295 Identities=11% Similarity=0.017 Sum_probs=161.1
Q ss_pred ChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh--hhhhcCCC-ccccCC
Q 017633 32 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP--FLVKAGSG-VATLGL 105 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~-~~~~~~ 105 (368)
.+...++.+.+.++++ + .+-++++.|||.+++.++..+.. .+++++++. + ++|.... .....|.+ +.....
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-~~g~~vLv~-g-~FG~r~~~eia~~~g~~~v~~l~~ 114 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-CRGVDVLAW-E-SFGKGWVTDVTKQLKLPDVRVLEA 114 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-CCCCeEEEE-C-HHHHHHHHHHHHhcCCCCcEEEcC
Confidence 3567778888888886 2 23467799999999999976532 245667764 3 5554322 22222321 222111
Q ss_pred CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc
Q 017633 106 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 185 (368)
+....+ |+++++. + .. +++.++-..+|...+ +++++..+ ++.++|+|-+-+
T Consensus 115 ~~g~~~--------------~~~~ve~--~---~~---v~~vhnETSTGv~np----v~~i~~~~--~~~lliVDavSs- 165 (374)
T TIGR01365 115 EYGKLP--------------DLKKVDF--K---ND---VVFTWNGTTSGVRVP----NGDFIPAD--REGLTICDATSA- 165 (374)
T ss_pred CCCCCC--------------CHHHcCC--C---CC---EEEecCCCchheecc----cccccccc--CCCcEEEEccch-
Confidence 111111 6777762 1 12 445555566788887 65554322 589999996664
Q ss_pred hhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHHhcCCCCc-------------------cccc-cCCC
Q 017633 186 FRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-------------------YQAG-TLSG 243 (368)
Q Consensus 186 ~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~-------------------~~~~-t~~~ 243 (368)
+ .+..+.++ + .|++ +..|++++.-.+|+++++++.++.......+ .... .+++
T Consensus 166 ~-g~~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP 240 (374)
T TIGR01365 166 A-FAQDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTP 240 (374)
T ss_pred h-cCCCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCCh
Confidence 1 22333333 2 4544 5569999555788999999887665531110 0112 2334
Q ss_pred CHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcC-CceEE----eeccceEEEEeecCCCcccchhcccc
Q 017633 244 NPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAG-HAICG----GYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+.....++..+++.+.++ + .+...++.+...+.+++.....+ +.... ........+.+..+.+++.. .. .
T Consensus 241 ~v~~l~a~~~~l~~i~~egG-le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~--~~-~ 316 (374)
T TIGR01365 241 SMLCVEDWLDALKWAESIGG-LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALD--ED-A 316 (374)
T ss_pred HHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccc--cc-h
Confidence 445666666777666554 4 33444444444444444444444 22111 11122233333111000000 00 0
Q ss_pred cHH-HHHHHHHHHHcCeeecCCCC----Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTK-FARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~-~~~~~~~l~~~Gi~~~~~~~----~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+ ..++.+.|.++||.+.++.. ..+|+ .-.++.+|++.+++.|+=+...
T Consensus 317 ~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 317 QADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred hhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 111 47899999999999987743 23454 3457999999999999865543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-11 Score=109.75 Aligned_cols=264 Identities=20% Similarity=0.158 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHcCC----CCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcC-----------C
Q 017633 13 QVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTG-----------R 75 (368)
Q Consensus 13 ~v~~a~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~-----------~ 75 (368)
...+.+...+.++. .+....+.+.++...++++++ ....-.+|+|||+|+..++.+++.... +
T Consensus 77 ~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~ 156 (460)
T COG0076 77 VAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGG 156 (460)
T ss_pred HHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 45555555555532 122345678888888999886 345688999999999999988764321 1
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE--EEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA--IILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~--~~~~~~~~~~ 153 (368)
...|+.+...|.+...+....|-+.........+... |++++++++.+. +.. ++..-....+
T Consensus 157 ~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~i-------------d~~~l~~~i~~~---t~~g~vV~~aGtT~~ 220 (460)
T COG0076 157 KPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRI-------------DVDALEEAIDEN---TIGGVVVGTAGTTDT 220 (460)
T ss_pred CCeEEecCcchhHHHHHHHHhCCCceeEEeccCcccc-------------CHHHHHHHHHhh---ccCceEEEEecCCCC
Confidence 2257777889998888888887765433222111111 899999999953 333 5555555556
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccccCC-Ccchhh--hhhhccCCccceeeeehHH--H
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--I 225 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~~--~ 225 (368)
|.+-+ +++|+++|+++++++++|.++.|+ . ......+ .+++ ..|-++ +-|......++|+++.++. +
T Consensus 221 G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l 295 (460)
T COG0076 221 GSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEAL 295 (460)
T ss_pred CccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCCCCceEEEEECHHHh
Confidence 77777 999999999999999999999876 2 1111110 0122 223333 3488777789999977543 4
Q ss_pred HHHhcCCCCcccc------ccC--CCCHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcC-CceEEee
Q 017633 226 MEMVAPAGPMYQA------GTL--SGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAG-HAICGGY 293 (368)
Q Consensus 226 ~~~~~~~~~~~~~------~t~--~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 293 (368)
.+.+... ..+.. .+. +-+.-...++...++.+..+++ .++..++++++++.+++. + +.....+
T Consensus 296 ~~~~~~~-~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~----~~~e~~~~p 370 (460)
T COG0076 296 RRILIFA-DYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL----GDFELVNEP 370 (460)
T ss_pred hhhhhcc-cccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC----CCcEeecCC
Confidence 4443311 11111 111 1222245555566676655554 344446666666666653 3 3333334
Q ss_pred ccceEEEEe
Q 017633 294 ISGMFGFFF 302 (368)
Q Consensus 294 ~~~~~~~~~ 302 (368)
..+.+.+..
T Consensus 371 ~l~~V~fr~ 379 (460)
T COG0076 371 ELPIVAFRL 379 (460)
T ss_pred ccceEEEEc
Confidence 455556554
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=106.15 Aligned_cols=306 Identities=14% Similarity=0.099 Sum_probs=164.4
Q ss_pred CcHHHHHHHHHHHHcC---CCCCCCCh----hHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 10 SYLQVLAALGETMKKG---TSFGAPCL----LENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---~~~~~~~~----~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
-+.++++.....+..- .+-+..+. .....++.+.+.=+ +++++++|.|++.|+...+.+... ..++.|+
T Consensus 87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~-~~~~Gvl 165 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA-GKKTGVL 165 (475)
T ss_pred CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc-CCCCceE
Confidence 4456666666655541 11122223 34444444444332 578999999999999999987754 3677899
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~ 156 (368)
++-+-|.-+. +.+.+.+...+..++....++.. |.++|++.+.+. -+..++++++|.|++ |.+
T Consensus 166 iPiPQYPLYs-Ati~l~~~~~v~YyLdEe~~W~l------------d~~el~~~~~eA~k~i~~r~lvvINPGNPT-Gqv 231 (475)
T KOG0258|consen 166 IPIPQYPLYS-ATISLLGGTQVPYYLDEESNWSL------------DVAELERSVDEARKGINPRALVVINPGNPT-GQV 231 (475)
T ss_pred eecCCCchhH-HHHHHhCCcccceeeccccCCCC------------CHHHHHHHHHHHhccCCceEEEEECCCCcc-chh
Confidence 9888887654 44444444333222333334322 788888888752 233557777776554 444
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-h-cc-cCcccc----ccC-CCc------chhhhhhhccC--Cccceee-
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-R-LA-YGGAQE----YFG-VTP------DLTTLGKIIGG--GLPVGAY- 219 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~-~g-~~~~~~----~~~-~~~------di~s~sK~~~~--G~~iG~v- 219 (368)
.. ++-+++|..+|.+++++|+.||+|.+- + .+ .+.++. +++ -.+ .+.+.||++.| |.|-|++
T Consensus 232 ls-~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE 310 (475)
T KOG0258|consen 232 LS-EENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME 310 (475)
T ss_pred hc-HHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence 44 444999999999999999999999654 3 22 222222 122 112 13467899984 8999998
Q ss_pred eeh--HHHHHHhcCCCCccccccCCCCHHHHHHHH----------HHHHH--HccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 017633 220 GGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGI----------HTLKR--LKEPGTYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~----------~~l~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
+.+ ++..+.+....+..... +..++.... ..++. -+.++....++++++.+.+.++. .
T Consensus 311 v~n~~prv~~qi~Kl~si~lc~----~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns----~ 382 (475)
T KOG0258|consen 311 SLNRDPRVKQQIKKLASIKLCP----QVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNS----L 382 (475)
T ss_pred cccCChhHHHHHHHHHhhhhcC----CccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhh----c
Confidence 442 34433332110000000 000110000 00000 01234455566666655555554 4
Q ss_pred CCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC
Q 017633 286 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ 339 (368)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~ 339 (368)
.........|.|+.|.-..-+.+....++.....-..-++..|++. ||.+.||+
T Consensus 383 ~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 383 EGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGS 437 (475)
T ss_pred CceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCC
Confidence 4444556667776664332221111111100000013456777765 99999984
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=113.78 Aligned_cols=196 Identities=21% Similarity=0.180 Sum_probs=120.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC-CCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC-YHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~-~~~~ 88 (368)
++|++++++.+....... |..++...++.+.++++++.. ..+|++|||.|+.++++... .+.+.|++...+ .+.+
T Consensus 7 ~~~~m~~a~~~a~~gd~~-Yg~D~~~~~l~~~i~~l~g~e-~a~f~~sGT~An~~al~~~~--~~~~~vi~~~~aHi~~~ 82 (290)
T PF01212_consen 7 PTPAMLEAMAAANVGDDA-YGEDPTTARLEERIAELFGKE-AALFVPSGTMANQLALRAHL--RPGESVICADTAHIHFD 82 (290)
T ss_dssp S-HHEEHHHHHTTSB-CC-TTSSHHHHHHHHHHHHHHTSS-EEEEESSHHHHHHHHHHHHH--HTTEEEEEETTEHHHHS
T ss_pred CCHHHHHHHHccccCCcc-cCCChhHHHHHHHHHHHcCCC-EEEEeCCCChHHHHHHHHHH--hcCCceeccccceeeee
Confidence 678999999554433333 446788999999999999754 55688899999999998775 356667775442 2223
Q ss_pred chhhh-hhcCCCccccCCCCCC-CCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 89 ADPFL-VKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
...+. ...|.++.. ++..+ +.+ |+++|++.+.. |..+++++.++...+..|...++.+++
T Consensus 83 E~ga~~~~~G~~~~~--l~~~~~G~l-------------~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el 147 (290)
T PF01212_consen 83 ETGAIEELSGAKLIP--LPSDDDGKL-------------TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEEL 147 (290)
T ss_dssp STTHHHHHTTCEEEE--EBECTGTBB--------------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHH
T ss_pred ccchhhHhcCcEEEE--CCCcccCCC-------------CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHH
Confidence 23333 334443321 22222 333 89999999987 445788888888777755556666679
Q ss_pred HHHHHHHHHhCCEEEEehhhhch---hcccCccccccCCCcchhhh--hhhccCCccceee-eehHHHHHH
Q 017633 164 NAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAY-GGRRDIMEM 228 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~---~~g~~~~~~~~~~~~di~s~--sK~~~~G~~iG~v-~~~~~~~~~ 228 (368)
++|.++|++||+.|++|-+-..- ..+. ....+-...|.+++ +|.+ |.++|.+ ++++++++.
T Consensus 148 ~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~--g~~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 148 RAISELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNG--GAPGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT---SSSEEEEEESHHHHHH
T ss_pred HHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEccc--ccccceEEEechHHHHH
Confidence 99999999999999999553110 0111 11111123466654 4654 4467766 667775443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-11 Score=113.76 Aligned_cols=311 Identities=11% Similarity=0.014 Sum_probs=178.9
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCC--
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-- 108 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (368)
++....+..+..++.|+.....+++||.|.++..++..+ .+++|.| +++.+-|.+...++.+.|...++.. |..
T Consensus 193 ~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~--~~~Gd~V-LvdRN~HKSv~~aLilsga~PVYl~-P~~n~ 268 (713)
T PRK15399 193 HTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYA--APAGSTL-LIDRNCHKSLAHLLMMSDVVPIWLK-PTRNA 268 (713)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHh--cCCCCEE-EeecccHHHHHHHHHHcCCeeEEec-ccccc
Confidence 456677777778888875556677776677777777655 2455555 4688999999988888877543221 111
Q ss_pred CCCCCCCCCcccccCC--CCHHHHHHHHHcCCCC---eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE-EEehh
Q 017633 109 PGVPKGATYETLTAPF--NDVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL-IFDEV 182 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~--~d~~~le~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~l-i~De~ 182 (368)
.+++ -.++. -+.+.+++.++++++. .++++.+|.+ .|.... ++.|.++| |+.+ ++|||
T Consensus 269 ~Gi~-------g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEA 332 (713)
T PRK15399 269 LGIL-------GGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSA 332 (713)
T ss_pred cCCc-------CCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEecc
Confidence 1110 00111 1458999999987643 3567776655 687787 88999988 6776 69999
Q ss_pred hhch-hcccCcc-cccc--CCCcchh---hhh--hhccCCc-cceeeeehHHHH-HHhcCCCCccccccCCCCHHHHHHH
Q 017633 183 MTGF-RLAYGGA-QEYF--GVTPDLT---TLG--KIIGGGL-PVGAYGGRRDIM-EMVAPAGPMYQAGTLSGNPLAMTAG 251 (368)
Q Consensus 183 ~~~~-~~g~~~~-~~~~--~~~~di~---s~s--K~~~~G~-~iG~v~~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~a~ 251 (368)
|.+. .....+. .... +-.+|.+ +.| |.++ ++ ..+++..+..+- +.++. .+....|.|++.+-+++.
T Consensus 333 hgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~-alTQaS~iHvk~~vd~~~~n~--a~~m~~STSPsY~LmASL 409 (713)
T PRK15399 333 WVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLA-AFSQASLIHIKGEYDEETFNE--AFMMHTSTSPSYPIVASV 409 (713)
T ss_pred chhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcccc-ccchheeeeecCCCCHHHHHH--HHHHHcCCCcHHHHHHHH
Confidence 9543 2222111 1111 1135655 445 7775 33 444554432211 12221 222445568888888888
Q ss_pred HHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEe------ecc--------ceEEE--------EeecC
Q 017633 252 IHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGG------YIS--------GMFGF--------FFTEG 305 (368)
Q Consensus 252 ~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~------~~~--------~~~~~--------~~~~~ 305 (368)
..+.++++. ..+.++..+.+..+|+.+.++.... ++...+- ... .+.++ .+.+.
T Consensus 410 D~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~ 489 (713)
T PRK15399 410 ETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPV 489 (713)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCc
Confidence 888777753 3467778888888888887753210 0000000 000 00000 00000
Q ss_pred CC--cccchh----cccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHH
Q 017633 306 PV--YNFEDA----KKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 306 ~~--~~~~~~----~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~ 364 (368)
++ ...... ....+..+..++++|.++||.+.-.+...+ .++...+++++++++++|.++
T Consensus 490 KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 490 KVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred eEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00 000000 000123357889999999999987765544 347788999999999998865
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=115.52 Aligned_cols=313 Identities=9% Similarity=0.009 Sum_probs=177.2
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCcccc-CCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDSP 109 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 109 (368)
++....+..+..++.|+.....+++||.|.++..++..+ .+++|. ++++.+-|.+...++.+.|...++. +.-...
T Consensus 193 ~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~--~~~Gd~-VLvdRN~HKSv~haLilsga~PVYl~P~rn~~ 269 (714)
T PRK15400 193 HSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYS--APAGST-VLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAY 269 (714)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHh--cCCCCE-EEeecccHHHHHHHHHHcCCeEEEeccccccc
Confidence 456667777778888865556667766667777666655 244554 5568899999998888887754321 111011
Q ss_pred CCCCCCCCcccccCC--CCHHHHHHHHHcCCCCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh
Q 017633 110 GVPKGATYETLTAPF--NDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~--~d~~~le~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~ 184 (368)
+++ -.++. -+.+.+++.++++++.. .+++.+|.+ .|.... ++.|.++|+.++ +++||||.
T Consensus 270 Gi~-------g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwg 334 (714)
T PRK15400 270 GIL-------GGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWV 334 (714)
T ss_pred CCc-------cCCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccch
Confidence 110 01111 14899999999876433 477777766 688888 999999999887 68999995
Q ss_pred ch-hcccCcc-ccccCCCc---c--hhhhh--hhccCCc-cceeeeehHHH-HHHhcCCCCccccccCCCCHHHHHHHHH
Q 017633 185 GF-RLAYGGA-QEYFGVTP---D--LTTLG--KIIGGGL-PVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIH 253 (368)
Q Consensus 185 ~~-~~g~~~~-~~~~~~~~---d--i~s~s--K~~~~G~-~iG~v~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~~ 253 (368)
+. .....+. ........ | +++.| |.++ ++ .-+++..+..+ .+.+.. .+....|.|++.+-+++...
T Consensus 335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~-alTQaS~LHvkg~vd~~~~n~--a~~m~~STSPsY~l~ASLD~ 411 (714)
T PRK15400 335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA-AFSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVASTET 411 (714)
T ss_pred hhhccCcccCCcChhhcCCCCCCceEEEEchhhccc-chhHHhHHHHcCCCCHHHHHH--HHHHHcCCCcHHHHHHHHHH
Confidence 43 2222111 11111111 3 55555 7775 33 23333332111 011110 12244555788888888888
Q ss_pred HHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeecc--------------ceEEE--------EeecCC-
Q 017633 254 TLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYIS--------------GMFGF--------FFTEGP- 306 (368)
Q Consensus 254 ~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~--------------~~~~~--------~~~~~~- 306 (368)
+..+++. +.+.++..+.+..+|+.+.++.... ++...+-... .+.++ .+.+.+
T Consensus 412 a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Kl 491 (714)
T PRK15400 412 AAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKV 491 (714)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceE
Confidence 8777753 3467778888888888887742100 0000000000 00000 000000
Q ss_pred -Ccccchhcc----cccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHH
Q 017633 307 -VYNFEDAKK----SETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 307 -~~~~~~~~~----~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~ 364 (368)
+........ ..+..+..++++|.++||.+.-.+...+ .++...++++++.++++|.++
T Consensus 492 ti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 492 TLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred EEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 000000000 0112256788999999999987765543 357788999999999998865
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-11 Score=106.85 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh-----cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
+...+|.+.|+++.+...-.+-.+||.++-+..++..|.| .+..+|...+-+.||...+.....|-++.......
T Consensus 582 ~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~ 661 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDA 661 (1001)
T ss_pred HHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccC
Confidence 3455677777777654445566788999888888887766 24678888899999998888888888765444433
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh----
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM---- 183 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~---- 183 (368)
..++ |..+|.....+|.++.+++++ +.+++.|..-+. +++++++.++||.-++.|-+-
T Consensus 662 ~G~i--------------d~~dLk~kaekh~~~Laa~Mv-TYPST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAq 723 (1001)
T KOG2040|consen 662 NGNI--------------DMVDLKAKAEKHKDNLAALMV-TYPSTHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQ 723 (1001)
T ss_pred CCCc--------------cHHHHHHHHHHhhhhhheeEE-eccccccccccc---HHHHHHHHHhcCCEEEecCCCccce
Confidence 3333 889999888887777776666 344445543332 999999999999999999544
Q ss_pred hch-hcccCccccccCCCcchh--hhhhhc----c-CCccceeeeehHHHHHHhcCCCCccc------------cccCCC
Q 017633 184 TGF-RLAYGGAQEYFGVTPDLT--TLGKII----G-GGLPVGAYGGRRDIMEMVAPAGPMYQ------------AGTLSG 243 (368)
Q Consensus 184 ~~~-~~g~~~~~~~~~~~~di~--s~sK~~----~-~G~~iG~v~~~~~~~~~~~~~~~~~~------------~~t~~~ 243 (368)
.|+ +.|.. ..|++ -+-|.| | ||..+|-+.+.++++..+...-.... ++..-+
T Consensus 724 VGlc~pGd~--------GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~G 795 (1001)
T KOG2040|consen 724 VGLCRPGDI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWG 795 (1001)
T ss_pred ecccCCccc--------cccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCC
Confidence 444 33332 22443 233555 4 45889999999998877753221110 111112
Q ss_pred CHHHHHHHHHHHHHHccCCHHH---HHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYE---YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
+..-....++-++++...++.+ -..-++.+...+|+.- ++. ...+....+.-++ |.+...+|...+.+
T Consensus 796 sa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h---Yki--l~~~~~~~vaHEF----IlD~r~fK~~agie 866 (1001)
T KOG2040|consen 796 SALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH---YKI--LFRGENGLVAHEF----ILDLRPFKKTAGIE 866 (1001)
T ss_pred cceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc---cce--eEecCCcceeeee----eeechhhccccCCc
Confidence 3344445566777777665532 3445667777777663 221 2222222333333 33334444445567
Q ss_pred HHHHHHHHHHcCeeecCCCCCcc-c----cccCCCHHHHHHHHHHHHHHHhh
Q 017633 321 FARFYRGMLEEGVYFAPSQFEAG-F----TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~~~~-~----~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+++++|.+.|+......+|.- + +.-.-+.+|++++|+++-.+-++
T Consensus 867 avDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreE 918 (1001)
T KOG2040|consen 867 AVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREE 918 (1001)
T ss_pred HHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHH
Confidence 88999999999999887766642 2 33445778999999998776543
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-10 Score=95.70 Aligned_cols=321 Identities=16% Similarity=0.059 Sum_probs=185.3
Q ss_pred eeccCCCcHHHHHHHHHHHHcC--------CCCC--CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh
Q 017633 4 LIILFPSYLQVLAALGETMKKG--------TSFG--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~--------~~~~--~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~ 72 (368)
-|.+|..++.+.+...+..... .... ..-+..+.|-.+++-+.+ ...++.++.|-+--+...+..+.+.
T Consensus 37 gnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~ 116 (407)
T COG3844 37 GNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRP 116 (407)
T ss_pred ccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhcc
Confidence 3778877766666555543331 1111 112344566666666676 6788888875555555555555555
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCC--CcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT--YETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
..++.||++++.-+.+-..... +.....+ .++..+ .++.+++++++ +.+++++...++
T Consensus 117 ~~~r~vIv~E~~~fpTdly~a~---------------g~~~~~~~~~~~~~~--~~P~~~~~~~~---dd~AvV~L~~V~ 176 (407)
T COG3844 117 QEGRRVIVSEGDNFPTDLYIAE---------------GLADLLGIGYDLEGV--IAPRALEEAIT---DDVAVVLLSHVN 176 (407)
T ss_pred CCCceEEeecCCCCCcchhhhc---------------chhhhhcccccceee--eChHHHHHhhc---cceEEEEecccc
Confidence 5678888887655543211110 1110000 011111 15778888888 689999999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhhhhccCCc-cceeeeehHHHHHH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEM 228 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~sK~~~~G~-~iG~v~~~~~~~~~ 228 (368)
.-+|...+ +.+|-.++++||++++-|=+|+ .|.. .....+|.+--+.+-=|.++||. -.+++.+.++..+.
T Consensus 177 y~TGql~d----m~aiT~~AH~~galv~wDLAHs---aGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~ 249 (407)
T COG3844 177 YKTGQLLD----MRAITALAHQHGALVGWDLAHS---AGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRER 249 (407)
T ss_pred ccccceee----HHHHHHHHHhcCceEEeehhcc---cCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccc
Confidence 99999999 9999999999999999999995 2221 22223333222445559998553 34455443332222
Q ss_pred hcC--------CCCcccc------------ccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhc
Q 017633 229 VAP--------AGPMYQA------------GTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 229 ~~~--------~~~~~~~------------~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
..+ ..++.+. ...+.+-+++++...+++...+-+ ++++-....+++.+.++..-..+
T Consensus 250 ~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~ 329 (407)
T COG3844 250 SWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYY 329 (407)
T ss_pred cccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccC
Confidence 211 0111111 111345678888888888876533 33444444444444444322111
Q ss_pred CCce----EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc---ccCCCHHHHHHHH
Q 017633 286 GHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTI 358 (368)
Q Consensus 286 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~---~~~~~~~~i~~~~ 358 (368)
++.. .-...|.-+.+. .+...++.+.|.++||+.-......+++ +++.+-.|+=.++
T Consensus 330 ~l~l~tPr~~~~rGsqvS~~----------------hp~~~~V~qaLi~rGVigD~R~P~vlRfgftPlY~~~~DVw~AV 393 (407)
T COG3844 330 GLTLVTPRAHEERGSQVSLY----------------HPHGYQVMQALIDRGVIGDFREPDVLRFGFTPLYVSFVDVWDAV 393 (407)
T ss_pred CcEEeccchhhhccceeeEe----------------cCcHHHHHHHHHHcCccccccCCCeeeecCccceechhHHHHHH
Confidence 2111 111222222222 2345788999999999876554444443 7889999999999
Q ss_pred HHHHHHHhh
Q 017633 359 TAAEKVLRQ 367 (368)
Q Consensus 359 ~~l~~~l~~ 367 (368)
+.|++++++
T Consensus 394 ~~L~evL~t 402 (407)
T COG3844 394 DALEEVLDT 402 (407)
T ss_pred HHHHHHHHh
Confidence 999999865
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=104.76 Aligned_cols=306 Identities=17% Similarity=0.092 Sum_probs=159.0
Q ss_pred CcHHHHHHHHHHHHcCC-------CCCCCChh----HHHHHHHHHhhCC-CC---CeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKGT-------SFGAPCLL----ENVLAEMVISAVP-SI---EMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~-------~~~~~~~~----~~~l~~~l~~~~~-~~---~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|.+++++...+.+-. .|+..++. +.-..++..++|+ .+ ..-+-..||+.|+..++..+ ..+
T Consensus 32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aL--l~p 109 (399)
T PF00464_consen 32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMAL--LKP 109 (399)
T ss_dssp --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHH--T-T
T ss_pred cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHH--Hhh
Confidence 45666666665554411 12222333 2333444455555 31 23344558999998888766 357
Q ss_pred CceEEEEcCCCCCCchhhhhhcC-------CCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE
Q 017633 75 RERIIKFEGCYHGHADPFLVKAG-------SGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 145 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~ 145 (368)
+|.|+..+....|+......... .......| ....... |.+++++.+.++ ++++++
T Consensus 110 GD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~I-------------D~d~l~~~a~~~--kPklIi 174 (399)
T PF00464_consen 110 GDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLI-------------DYDELEKLAKEH--KPKLII 174 (399)
T ss_dssp T-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB--------------HHHHHHHHHHH----SEEE
T ss_pred cCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeE-------------CHHHHHHHHhhc--CCCEEE
Confidence 89999998777666432222111 10111111 1111211 899999999976 778888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeee
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 221 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~ 221 (368)
+-.... -...+ +++++++|++.|.+|+.|-+| +|+ -.|.. -+.+.. .|+++.| |+|. |.|.|.++.
T Consensus 175 ~G~S~y--~~~~d----~~~~reIad~vga~l~~D~sH~~GLIa~g~~--~~P~~~-ADvvt~sThKtl~-GPrggiI~~ 244 (399)
T PF00464_consen 175 CGASSY--PRPID----FKRFREIADEVGAYLMADISHIAGLIAGGLF--PNPFPY-ADVVTGSTHKTLR-GPRGGIILT 244 (399)
T ss_dssp EE-SST--SS-------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS----GCCT-SSEEEEESSGGG--SSS-EEEEE
T ss_pred ECchhc--cCccC----HHHHHHHHHhcCcEEEecccccccceehhee--cCcccc-ceEEEeecccccc-ccCceEEEE
Confidence 866542 22334 899999999999999999999 777 43322 122333 5787666 8886 558888888
Q ss_pred h--------------HHHHHHhcCCC-CccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHH
Q 017633 222 R--------------RDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 283 (368)
Q Consensus 222 ~--------------~~~~~~~~~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~ 283 (368)
+ +++.+.+...- +..++ +......++...++....+ .++.+++.++++.|.+.|.+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg---~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 245 NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQG---GPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-S---S--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCccccCCcccccHHHHHHHhccccCCCccc---CcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 8 77887776310 11111 2233344444445554433 34667777788888777777532
Q ss_pred hcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC---------cccc------ccC
Q 017633 284 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------AGFT------SLA 348 (368)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~---------~~~~------~~~ 348 (368)
+. . .-....+++++++... ..+..+..+.|.+.||.+....-| .+|+ ...
T Consensus 322 ~v--~-~ggTd~H~vlvd~~~~------------~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG 386 (399)
T PF00464_consen 322 KV--V-TGGTDNHQVLVDLRSF------------GIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRG 386 (399)
T ss_dssp EE--G-GGS-SSSEEEEEGGGG------------TS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT
T ss_pred EE--E-ECCCCCCeEEEEeccc------------ccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCC
Confidence 22 1 1113345778877531 223567778888889998543111 1232 356
Q ss_pred CCHHHHHHHHHH
Q 017633 349 HSSDDIQHTITA 360 (368)
Q Consensus 349 ~~~~~i~~~~~~ 360 (368)
+.++|++++-+.
T Consensus 387 ~~e~dm~~iA~~ 398 (399)
T PF00464_consen 387 MKEEDMKEIAEL 398 (399)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHhh
Confidence 677887776554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=104.25 Aligned_cols=306 Identities=12% Similarity=0.031 Sum_probs=166.2
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCC-ccccCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSP 109 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 109 (368)
+.....+..+..++.++.....+++||-|.|+...+..+ .+++|.|+ ++.+.|.+....+.++|.. +...+.. +
T Consensus 68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~--~~~GD~VL-vdRN~HKSi~~glilaGa~Pvyl~p~~--n 142 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAV--LTPGDKVL-VDRNCHKSIHHGLILAGATPVYLEPSR--N 142 (557)
T ss_pred CCccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhh--cCCCCEEE-ecCCccHHHHHHHHHcCCceEEecCCC--C
Confidence 456677888888888875566777776667777776655 34555554 5789999999888887773 2211110 0
Q ss_pred CCCCCCCCcccccCCC-CHHHHHHHHHcCCCC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch
Q 017633 110 GVPKGATYETLTAPFN-DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF 186 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~-d~~~le~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~ 186 (368)
+.+.+... +.+.+++.+.+++.. ..+++.+|.+ .|.... +++|.++++++++++.+||+| ..+
T Consensus 143 --------p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~ 208 (557)
T COG1982 143 --------PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHF 208 (557)
T ss_pred --------ccccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCcccc
Confidence 00111111 689999988887666 6677777766 688888 999999999999999999999 323
Q ss_pred -hcccCccccccCCCcchhhhh--hhccCCccceeeeehH-------HHHHHhcCCCCccccccCCCCHHHHHHHHHHHH
Q 017633 187 -RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRR-------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 256 (368)
Q Consensus 187 -~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~-------~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~ 256 (368)
..+... -...+...|+++.| |.+++.-..+++..++ .+.+.+. ...+.+++...+++...+-.
T Consensus 209 ~~~~~l~-~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~------~h~STSPsY~l~ASlD~Ar~ 281 (557)
T COG1982 209 DFSPMLP-ESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM------MHQSTSPSYPLMASLDVARM 281 (557)
T ss_pred cccccCc-chhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHH------HHccCCchHHHHHHHHHHHH
Confidence 222221 12222345677777 5544333455565553 2222222 33444667777776666433
Q ss_pred HHccCC--HHHHHHHHHHHHHHHHHHHHHhcCCceEEeec-----cceEEEEeecCC---Ccccchhc-c-cccHHHHHH
Q 017633 257 RLKEPG--TYEYLNKITGELTQGIIDAGKKAGHAICGGYI-----SGMFGFFFTEGP---VYNFEDAK-K-SETTKFARF 324 (368)
Q Consensus 257 ~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~ 324 (368)
.....+ +.+....+.-.+++.+++.....++....... ..+-|+.-.... .++..... . ..+..+..+
T Consensus 282 ~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v 361 (557)
T COG1982 282 QEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIV 361 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHH
Confidence 333222 32223333334444444433333311111100 001111111100 00000000 0 123346789
Q ss_pred HHHHHHcCeeecCCCCCcccc---cc-CCCHHHHHHHHHHHH
Q 017633 325 YRGMLEEGVYFAPSQFEAGFT---SL-AHSSDDIQHTITAAE 362 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~~~~~~---~~-~~~~~~i~~~~~~l~ 362 (368)
+++|+++|+...-.+...+.+ +. .....+++++++.++
T Consensus 362 ~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 362 AKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred HHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence 999999999988876555432 22 223344445444444
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-09 Score=95.70 Aligned_cols=326 Identities=13% Similarity=-0.015 Sum_probs=175.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE------EEcC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII------KFEG 83 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi------~~~~ 83 (368)
..++++++|.. +.-.+.-++...+|.+..+++++ .+.++++.+|..+...+++.... ++++.++ ++..
T Consensus 55 pS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~G-~E~alpthqGRgaE~Il~~~~~~-~~g~e~g~~~~~~~v~h 128 (467)
T TIGR02617 55 VTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIFG-YQYTIPTHQGRGAEQIYIPVLIK-KREQEKGLDRSKMVAFS 128 (467)
T ss_pred CCHHHHHHHHc----CCcccccCchHHHHHHHHHHHhC-CceEEECCCCchHHHHHHHhhcc-cccccccccccccccce
Confidence 45566666654 22223345667899999999885 45788999999999998876643 1233333 2234
Q ss_pred CCCCCch-hhhhhcCCCccccC---------CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCC
Q 017633 84 CYHGHAD-PFLVKAGSGVATLG---------LPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGN 152 (368)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~ 152 (368)
.+|-.+. +...+.|....... ...+++.. |+++|+++|+.+ +++...+.+.-.+|.
T Consensus 129 n~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~-------------dl~~le~~I~~~g~~~i~~v~~tlt~N~ 195 (467)
T TIGR02617 129 NYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNF-------------DLEGLERGIEEVGPNNVPYIVATITCNS 195 (467)
T ss_pred EEEEecchHHHHHcCceeecccchhhcccccCCCCCCCc-------------CHHHHHHHHhhcCCCCceeeeeeEEEec
Confidence 4444432 44455554321100 01122222 899999999863 234444444434455
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhh----ch-hccc----Ccccccc----CCCcch--hhhhhhccCCccce
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT----GF-RLAY----GGAQEYF----GVTPDL--TTLGKIIGGGLPVG 217 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~----~~-~~g~----~~~~~~~----~~~~di--~s~sK~~~~G~~iG 217 (368)
.|....+.+.++++.++|++||+.++.|-+-. .| ...+ ..+...+ --..|. +|+||.++. ++|
T Consensus 196 ~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgA--pvG 273 (467)
T TIGR02617 196 AGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMV--PMG 273 (467)
T ss_pred CCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCC--ccc
Confidence 56666677779999999999999999995441 11 1000 0111111 011243 467788764 677
Q ss_pred ee-eeh-H---HHHHHhcCCCCccc-cccCCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 218 AY-GGR-R---DIMEMVAPAGPMYQ-AGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 218 ~v-~~~-~---~~~~~~~~~~~~~~-~~t~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
.+ +++ + ++.+..+.....+- ..||++ +---+.+....++...+++++++.....+++.++|.+ .|.+..
T Consensus 274 g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~----~Gvpi~ 349 (467)
T TIGR02617 274 GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEE----IGVVCQ 349 (467)
T ss_pred ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHh----CCCcEE
Confidence 65 444 4 34444443222111 233332 3334444444555444566777777777777777766 456554
Q ss_pred EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCC------CC-----------ccc---cccCC
Q 017633 291 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FE-----------AGF---TSLAH 349 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~-----------~~~---~~~~~ 349 (368)
. ..|+-+.++-.. ..+.. ++..--+..++.+|- +.||....-| ++ .+| +.-.-
T Consensus 350 ~-~Gghav~iDa~~--~lphi---p~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvy 423 (467)
T TIGR02617 350 Q-AGGHAAFVDAGK--LLPHI---PADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATY 423 (467)
T ss_pred e-cCccEEEEehhh--hCCCC---ChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccc
Confidence 4 444433443322 10000 001111456676664 4465533211 11 012 23344
Q ss_pred CHHHHHHHHHHHHHHHh
Q 017633 350 SSDDIQHTITAAEKVLR 366 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~ 366 (368)
|.++++...+++..+.+
T Consensus 424 t~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 424 TQTHMDFIIEAFKHVKE 440 (467)
T ss_pred cHhHHHHHHHHHHHHHh
Confidence 78999999999988764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-10 Score=99.33 Aligned_cols=174 Identities=24% Similarity=0.230 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHhhCC-C-------CCeEEEeCChHHHHHHHHHHHHHh-------cC----CceEEEEcCCCCCCchhh
Q 017633 32 CLLENVLAEMVISAVP-S-------IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPF 92 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~-------~~~v~~~~~gt~a~~~al~~~~~~-------~~----~~~vi~~~~~~~~~~~~~ 92 (368)
++.+.++.++++++++ + ...-++|+|||+++..++.+++.. .+ .+.+++....-|-+...+
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 3577888888999886 3 146889999999999999777633 11 234666677778877788
Q ss_pred hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC--CC-eEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 93 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~--~~-~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
+...|.++...+......+ |+++|++.+.+.. .. +.+|+..-...++|.+-+ +++|+++
T Consensus 158 a~~lGlg~~~I~~~~~~~m--------------d~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i 219 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRM--------------DIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADI 219 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB---------------HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHH
T ss_pred cceeeeEEEEecCCcchhh--------------hHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhh
Confidence 8877776544333221122 7899999887521 12 334444444445677666 9999999
Q ss_pred HHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehH
Q 017633 170 TKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR 223 (368)
Q Consensus 170 ~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~ 223 (368)
|++|++++++|.+|.|. ......-....++ ..|-++ .-|.++..+.+|+++.++
T Consensus 220 ~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~ 277 (373)
T PF00282_consen 220 CEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRD 277 (373)
T ss_dssp HHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESS
T ss_pred ccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeec
Confidence 99999999999999773 1111110001111 123232 449998888999997754
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-09 Score=91.56 Aligned_cols=309 Identities=12% Similarity=-0.023 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHHHcCCC---------CCC--CChhHHHHHHHHHhhCC--CCCe-EEEeCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGTS---------FGA--PCLLENVLAEMVISAVP--SIEM-VRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~---------~~~--~~~~~~~l~~~l~~~~~--~~~~-v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
-|++|++++.+.+.+... +.. ..+...+..+.+.++++ +..+ +++..|||.+++.+...+ ..++
T Consensus 15 lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl--l~~g 92 (364)
T PRK12462 15 LPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF--SRPG 92 (364)
T ss_pred CCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc--CCCC
Confidence 456888888887766211 211 23567788888888886 2334 455566899999888655 2345
Q ss_pred ceEE-EEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERII-KFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++ ....++++....-.... | .+....... ..+...++ +++++ +.. ++.+.+.+.++...+
T Consensus 93 ~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~--------~~~~~~~p--~~~~~----~~~-~d~~~v~~t~NETst 156 (364)
T PRK12462 93 AAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGA--------ASGYRTLP--SLAEL----DWD-ARAPFRHYVSNETVE 156 (364)
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcC--------CCCCCcCC--CHHHh----ccC-CCCcEEEEccCCCCc
Confidence 5555 55556656443322221 2 111110000 00111111 34443 221 245667777777777
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
|...+ ++.+.+++++|+|-+-+ + .+....++.| |++ +..|+++ .-+++.++.++++++....
T Consensus 157 Gv~~~---------~~~~~~~~llvvD~sS~-~-~s~pid~~~~----dvi~agsQKnlg-P~Gltvvivs~~al~~~~~ 220 (364)
T PRK12462 157 GLQFP---------DAAGLPDSPLIADMSSD-F-MSRPFDVEAY----GMVYAHAQKNLG-PAGVTVAIIRRALLERVPD 220 (364)
T ss_pred eEecC---------cccccCCCeEEEEcCch-h-hCCCCChHHc----cEEEeeccccCC-CCceEEEEECHHHHhhccc
Confidence 87665 22233799999996653 1 2233444555 544 4569998 3357788999988876553
Q ss_pred CCCcc--------ccccC-CCCHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcC-Cce---EEeeccc
Q 017633 232 AGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP--GTYEYLNKITGELTQGIIDAGKKAG-HAI---CGGYISG 296 (368)
Q Consensus 232 ~~~~~--------~~~t~-~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~-~~~---~~~~~~~ 296 (368)
..+.+ ..+++ +++....+++..+++.+.++ + ++.+.++.+...+.+.+...... +.. .......
T Consensus 221 ~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GG-l~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~ 299 (364)
T PRK12462 221 TLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGG-VHAMRDINARKAAMLYATLDALNEVIDCHAHRAARST 299 (364)
T ss_pred cCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCc
Confidence 22211 12333 56677888888999988665 4 34455555555555555544433 211 1111111
Q ss_pred -eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cccccc--cCCCHHHHHHHHHHHHHHHh
Q 017633 297 -MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 297 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~~--~~~~~~~i~~~~~~l~~~l~ 366 (368)
-+.|.+ +++....+|.+.+.++|+.-.-|.. ..+|.+ -.++.+.++.+++-+++.-+
T Consensus 300 mnv~f~~-------------~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 300 MNVAFRF-------------RQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred ceEEEEc-------------CCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 223322 2445568899999999988866532 223443 45699999999999887654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=101.94 Aligned_cols=300 Identities=11% Similarity=0.130 Sum_probs=161.8
Q ss_pred cHHHHHHHHHHHHcCCCCC-CCC-------hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-CCceEEE
Q 017633 11 YLQVLAALGETMKKGTSFG-APC-------LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-GRERIIK 80 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~-~~~-------~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~-~~~~vi~ 80 (368)
|+.+++++.+...-.+.|+ |.. +...++...++++.+ +.+++.++.++|.+.+.++.....-. ++++|++
T Consensus 118 P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlV 197 (993)
T PLN02414 118 PPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLI 197 (993)
T ss_pred CHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEE
Confidence 3555577766544322232 211 234567777888888 77889999999999998775443222 3466777
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+..|..+........ ...+.+++.++..+.+ ... +.+..++ ..+++.+|.+.+
T Consensus 198 s~~~hP~~~~v~~t~a----------------~~~GieV~~v~~~~~~----~~~---~~v~~vl-vq~P~~~G~v~d-- 251 (993)
T PLN02414 198 ASNCHPQTIDVCQTRA----------------DGLGLEVVVADEKDFD----YSS---GDVCGVL-VQYPATDGEVLD-- 251 (993)
T ss_pred cCccCHhHHHHHHHhh----------------hhcCCEEEEecchhhc----ccc---CceEEEE-EecCCCCeEEcC--
Confidence 6665554433322211 1112233333321211 111 2344443 455566888888
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhh--hhhc---c-CCccceeeeehHHHHHHhcC--C
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKII---G-GGLPVGAYGGRRDIMEMVAP--A 232 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~--sK~~---~-~G~~iG~v~~~~~~~~~~~~--~ 232 (368)
+++|+++||++|+++++ .++. +..+..-....+| .|+++. -|.. | ||...|++.+++++.+.+.. .
T Consensus 252 --v~~I~~~ah~~GaL~iV-aad~-lal~~l~~pge~G--ADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriV 325 (993)
T PLN02414 252 --YAEFVKNAHANGVKVVM-ATDL-LALTMLKPPGEWG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRII 325 (993)
T ss_pred --HHHHHHHHHHcCCEEEE-EECH-HHhcCCCCHhhcc--CcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCccc
Confidence 99999999999999999 4441 1011111122333 365432 2443 2 45569999999888765541 1
Q ss_pred C--------Ccc------c-----cccCCCCHHHHHHHHHHHH-----HHccCCH---HHHHHHHHHHHHHHHHHHHHhc
Q 017633 233 G--------PMY------Q-----AGTLSGNPLAMTAGIHTLK-----RLKEPGT---YEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 233 ~--------~~~------~-----~~t~~~~~~~~~a~~~~l~-----~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
+ +.+ . .-..+.|..+..+..+++. .+...++ .+++.++..+++++|.+.
T Consensus 326 G~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~---- 401 (993)
T PLN02414 326 GVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL---- 401 (993)
T ss_pred CcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc----
Confidence 1 000 0 0011223322222222322 2223333 455666666777666543
Q ss_pred CCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHH
Q 017633 286 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~ 362 (368)
++.......-..+.+.+ + +..++.+.|.++||.++......+ ++....|++||+++++.|.
T Consensus 402 G~~~~~~~~f~~vt~~~--------------~--~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 402 GFQVQSLPFFDTVKVKC--------------S--DADAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred CCccCCCCCcCeEEEec--------------C--CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHc
Confidence 32211111111222222 1 237789999999998886644433 4578889999999999996
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-08 Score=99.41 Aligned_cols=275 Identities=13% Similarity=0.147 Sum_probs=152.1
Q ss_pred hHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC--CceEEEEcCCCCCCchhhhhh-cCCCccccCCCCCC
Q 017633 34 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSP 109 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 109 (368)
...++...++++.+ +..++.+..++|.+.+.++...+ +.+ +++|++.+..|..+....... ...
T Consensus 122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~----------- 189 (954)
T PRK05367 122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRTRAEPL----------- 189 (954)
T ss_pred HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHHHHHhC-----------
Confidence 34466777888887 77788888899999997765443 333 367777666554433222211 111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
+.+++.++..+ +++ .+++.++ +.++++..|.+.+ +++|+++||++|+++++|-.+... +
T Consensus 190 ------G~ev~~~~~~~--d~~------~~~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al--~ 248 (954)
T PRK05367 190 ------GIEVVVGDAAK--ALD------HDDVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLAL--T 248 (954)
T ss_pred ------CCEEEEecCcc--CCC------cccEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhc--c
Confidence 11222232211 111 1245444 4455667888888 999999999999999999766322 1
Q ss_pred cCccccccCCCcchh--hhhhh---cc-CCccceeeeehHHHHHHhcCC--C--------C-c------------ccccc
Q 017633 190 YGGAQEYFGVTPDLT--TLGKI---IG-GGLPVGAYGGRRDIMEMVAPA--G--------P-M------------YQAGT 240 (368)
Q Consensus 190 ~~~~~~~~~~~~di~--s~sK~---~~-~G~~iG~v~~~~~~~~~~~~~--~--------~-~------------~~~~t 240 (368)
-......+|. |++ +.-|. ++ ||...|++.+++++.+.+... + . + +...|
T Consensus 249 ~l~~pge~Ga--Di~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaT 326 (954)
T PRK05367 249 LLTPPGEMGA--DIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKAT 326 (954)
T ss_pred CCCChhhcCC--CEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccc
Confidence 1112233444 554 33354 22 455699999999888777521 1 0 0 00011
Q ss_pred CCCCH-HHHHHHHHH--HHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 241 LSGNP-LAMTAGIHT--LKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 241 ~~~~~-~~~~a~~~~--l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
....+ .+..++.++ +..+..+++ .++...+..+++++|.+. ++..........+.+.+
T Consensus 327 sNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~----G~~~~~~~~f~~~~~~~------------ 390 (954)
T PRK05367 327 SNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL----GLEVVHDSFFDTLTVEV------------ 390 (954)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCCCCeEEEeC------------
Confidence 11111 111222222 133434433 445666666666666542 22111111111112221
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~ 362 (368)
. .+..++.++|+++||.++...... +.+....|++||+++++.|.
T Consensus 391 --~-~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 391 --G-GDAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred --C-CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 1 135789999999999996653333 34577889999999999996
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-08 Score=85.61 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=132.6
Q ss_pred CcHHHHHHHHHHHHcCCC--CC-CCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC-
Q 017633 10 SYLQVLAALGETMKKGTS--FG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG- 83 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~--~~-~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~- 83 (368)
-+|++++++.+....... ++ .......++...-...++ +.+.+.++++-+.|+..++... ..+..+++.-+
T Consensus 39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al---~~~~EvVis~g~ 115 (395)
T COG1921 39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNAL---AEGKEVVVSRGE 115 (395)
T ss_pred CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhh---ccCCeEEEEccc
Confidence 567888888887766321 11 112222333322222222 4678888888888888887544 22434555322
Q ss_pred ---CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE--EcccCCCCCcccC
Q 017633 84 ---CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII--LEPVVGNSGFIAP 158 (368)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 158 (368)
++|....-.+..+|.+.+-.. ..+. ....+++.+|++ ++++++ ..++++..+. .+
T Consensus 116 lV~gg~~~v~d~~~~aG~~l~EvG---~tn~-------------t~~~d~~~AIne---~ta~llkV~s~~~~f~~~-l~ 175 (395)
T COG1921 116 LVEGGAFRVPDIIRLAGAKLVEVG---TTNR-------------THLKDYELAINE---NTALLLKVHSSNYGFTGM-LS 175 (395)
T ss_pred cccCCCCChhHHHHHcCCEEEEec---ccCc-------------CCHHHHHHHhcc---CCeeEEEEeecccccccc-cc
Confidence 455555555555555443211 1111 158899999995 344333 3333333333 44
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
+++++++|++||+++++|.+-... + -..-.-..+...+|+++|| |.|+ |.+-|.+++++++++.+....
T Consensus 176 ----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq~~~-- 247 (395)
T COG1921 176 ----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQSHP-- 247 (395)
T ss_pred ----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHHHhhh--
Confidence 789999999999999999777432 2 1111223345678999999 8776 557889999999998887432
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKE 260 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~ 260 (368)
..-.+.......++..++++....
T Consensus 248 -l~Ralrv~K~tla~l~~aLe~y~~ 271 (395)
T COG1921 248 -LKRALRVDKETLAALEAALELYLQ 271 (395)
T ss_pred -hhhhhhcCcHhHHHHHHHHHHHcC
Confidence 233445667777888888887765
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=94.01 Aligned_cols=250 Identities=19% Similarity=0.198 Sum_probs=55.9
Q ss_pred eccCC--CcHHHHHHHHHHHHcCCCCCC--C----ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 5 IILFP--SYLQVLAALGETMKKGTSFGA--P----CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 5 ~~~g~--~~~~v~~a~~~~~~~~~~~~~--~----~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++|. -++++.+++.+....+....+ - -.-+..+.+.++.+. +.++.+++|+-..|+.+++..+. .+.
T Consensus 11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt-gAeaA~VvNnnaAAv~L~l~~la---~~~ 86 (367)
T PF03841_consen 11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT-GAEAALVVNNNAAAVLLALNTLA---KGK 86 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc---ccc
Confidence 45665 345677777766554322111 0 011233444444444 56778888888899988886542 345
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC---CHHHHHHHHHcCCCCeEEEEEcc-cCC-
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEP-VVG- 151 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~~~~~~~~~~~~~~~~-~~~- 151 (368)
+||+..+--- ..|..+. .+.+....|...+.+-.. .+++++++|+ ++|++++-.. .|.
T Consensus 87 EvIvsRGelV--------eiGgsFR------ip~vm~~sGa~lvEVGttN~t~~~Dye~AI~---e~Ta~ll~Vh~Sn~~ 149 (367)
T PF03841_consen 87 EVIVSRGELV--------EIGGSFR------IPDVMRQSGARLVEVGTTNRTHLSDYEKAIT---ENTAALLKVHTSNFR 149 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc--------ccccccc------ccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 6666543111 1111111 122333445555555432 4788999998 4676664443 332
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch----hcc---cCccccccCCCcchhhhh--hhccCCccceeeeeh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF----RLA---YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 222 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~----~~g---~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~ 222 (368)
..|..-.+. ++++++++++|++++|+|-.-..+ ..| +....+.....+|+++|| |-++| ...|.+++.
T Consensus 150 i~GFt~~~~--~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~Gk 226 (367)
T PF03841_consen 150 IQGFTGEVS--LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQAGIIVGK 226 (367)
T ss_dssp -------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-EEEEEE
T ss_pred ccccccccc--HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CCeEEEEeC
Confidence 233222222 999999999999999999766222 111 222333455678999999 88764 457999999
Q ss_pred HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC--------------HHHHHHHHHHHHHHHHHHH
Q 017633 223 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG--------------TYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 223 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~--------------~~~~~~~~~~~l~~~l~~~ 281 (368)
+++++.++. ....-.+..+-...++..++++.+.+++ -.+.++++++.+...|...
T Consensus 227 k~lI~~lk~---~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 227 KELIEKLKK---HPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp HHHHHHHHH---HHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHhh---CCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 999998873 2233445667788888888887664311 1344555555555555553
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-06 Score=74.50 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=157.5
Q ss_pred HHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCC
Q 017633 37 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 115 (368)
Q Consensus 37 ~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (368)
++...++++.+ +-...-+-..+|.+-+.++...+..+.+.+.++++..-|..+...+... .+..
T Consensus 124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tr---------------a~~~ 188 (450)
T COG0403 124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTR---------------AEGL 188 (450)
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhh---------------cccC
Confidence 44445666666 4444444556777767666655443333466666777777654443332 2233
Q ss_pred CCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE--ehhhhchhcccCcc
Q 017633 116 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLAYGGA 193 (368)
Q Consensus 116 ~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~--De~~~~~~~g~~~~ 193 (368)
+.+++.++++|.+++++. .. ..+.++++.-++.-+..... ++++.+.+|++|.++++ |-.-.++ .-.
T Consensus 189 g~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~L----L~p 257 (450)
T COG0403 189 GIEIEVVDADDLDDLESA-DD--GDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGL----LKP 257 (450)
T ss_pred ceEEEEeccchhhhhhhc-cc--cCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhc----cCC
Confidence 445666777788888888 42 36788887665533324444 99999999999988774 4222222 111
Q ss_pred ccccCCCcchh-----hhhhhcc-CCccceeeeehHHHHHHhcCC--C--------C---------------ccccccCC
Q 017633 194 QEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA--G--------P---------------MYQAGTLS 242 (368)
Q Consensus 194 ~~~~~~~~di~-----s~sK~~~-~G~~iG~v~~~~~~~~~~~~~--~--------~---------------~~~~~t~~ 242 (368)
...+|- |++ .|+=.++ ||..+|++.+.+++.+.+..+ + + -.-.++.+
T Consensus 258 PGe~GA--DIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNIC 335 (450)
T COG0403 258 PGEFGA--DIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNIC 335 (450)
T ss_pred ccccCC--ceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhh
Confidence 122333 443 3677777 788899999999887776521 0 0 01123333
Q ss_pred CCHHHHHHHHHHH-HHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 243 GNPLAMTAGIHTL-KRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 243 ~~~~~~~a~~~~l-~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.++...+.+.+.+ ..+..++ ..++..+...++.++|++. +.........+|-.+.+.. +.
T Consensus 336 TnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~----~~g~~~~~~~fFdt~~v~~------------~~ 399 (450)
T COG0403 336 TNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEI----GAGVELVFDHFFDTFTVRV------------PE 399 (450)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhc----CCceEeccccceeeEEEec------------ch
Confidence 4433333332222 2233333 3445555555565555543 2111121113333333321 11
Q ss_pred HHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.....+.+.....|+-++......+ ++.-..++++++.+++.+....
T Consensus 400 ~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 400 EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 2345666666677888876544333 3345568999999999887643
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-07 Score=84.16 Aligned_cols=233 Identities=13% Similarity=0.055 Sum_probs=134.3
Q ss_pred CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-------C-C--------------------------
Q 017633 31 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-------G-R-------------------------- 75 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~-------~-~-------------------------- 75 (368)
.+..+.++-+++++.++ +...-.+|+|||+|+..++.++|... . .
T Consensus 121 ~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~ 200 (608)
T TIGR03811 121 TSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLES 200 (608)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccc
Confidence 45788899999999997 44567789999999999998887531 0 0
Q ss_pred ---------------------ceEEEEcCCCCCCchhhhhhcCCC---ccccCCCCCCCCCCCCCCcccccCCCCHHHHH
Q 017633 76 ---------------------ERIIKFEGCYHGHADPFLVKAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALE 131 (368)
Q Consensus 76 ---------------------~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 131 (368)
..+++.+..-|-+...+..+.|.+ +...++.....+ |+++|+
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rm--------------d~~~L~ 266 (608)
T TIGR03811 201 AGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRM--------------DINELE 266 (608)
T ss_pred cccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcC--------------CHHHHH
Confidence 004555556676666666665553 222222111112 899999
Q ss_pred HHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH---HHhCC--EEEEehhhhch-hc---cc---Ccc---
Q 017633 132 NLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT---KENGA--LLIFDEVMTGF-RL---AY---GGA--- 193 (368)
Q Consensus 132 ~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~---~~~~~--~li~De~~~~~-~~---g~---~~~--- 193 (368)
+.+.+ ....+.+|+..-.....|.+-| +++|+++| +++|+ ++++|.+|.|+ .. .. ...
T Consensus 267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~ 342 (608)
T TIGR03811 267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDD 342 (608)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccch
Confidence 88874 2123444555444444676666 88888888 77897 69999999774 11 00 000
Q ss_pred ----------c--------c----cc-CC-Ccchhh--hhhhccCCccceeeeehH-HHHHHhcCCCCccc---------
Q 017633 194 ----------Q--------E----YF-GV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEMVAPAGPMYQ--------- 237 (368)
Q Consensus 194 ----------~--------~----~~-~~-~~di~s--~sK~~~~G~~iG~v~~~~-~~~~~~~~~~~~~~--------- 237 (368)
+ + .+ ++ ..|-+| .-|.+...+.+|.++.++ ++.+.+.....+..
T Consensus 343 ~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~ 422 (608)
T TIGR03811 343 LQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPAL 422 (608)
T ss_pred hhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCccc
Confidence 0 0 00 11 122233 338877778899887754 44444432111110
Q ss_pred --cccCCCCH--HHHHHHHHHHHHH--cc---CCHHHHHHHHHHHHHHHHHHH
Q 017633 238 --AGTLSGNP--LAMTAGIHTLKRL--KE---PGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 238 --~~t~~~~~--~~~~a~~~~l~~~--~~---~~~~~~~~~~~~~l~~~l~~~ 281 (368)
..+..++. ..+.+...+++.+ .. ..+.++..+.++++.+.|++.
T Consensus 423 ~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 423 LGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01122232 3355555666665 33 335666777777777777663
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.6e-07 Score=77.55 Aligned_cols=199 Identities=23% Similarity=0.297 Sum_probs=115.0
Q ss_pred HHHHHHHHHH-HHc-----CCCCCCCChhHHHHHHHHHhhCCCCCeE---EEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 12 LQVLAALGET-MKK-----GTSFGAPCLLENVLAEMVISAVPSIEMV---RFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 12 ~~v~~a~~~~-~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~v---~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
..|++|+++. +.. .+.||+.+..++.|.+-+++.++..+.. .+. |||-|+..++.-. .+++|..+...
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~v-SGTHAi~~~Lfg~--LrpGD~ll~~t 103 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFV-SGTHAIALALFGV--LRPGDELLSIT 103 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS--SHHHHHHHHHHHH----TT-EEEESS
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhccccc-chHHHHHHHHHhc--CCCCCeEEEcC
Confidence 3466666542 111 2567888889999999999999632222 233 7999999998655 35788888766
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC-----CHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
+.=+-+....+...+. ..+-.+..+.....++.. |.+.++++++ ++++++++.-.-+=...-.
T Consensus 104 G~PYDTL~~VIG~~g~---------~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~s 171 (403)
T PF06838_consen 104 GKPYDTLEEVIGIRGN---------GPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPS 171 (403)
T ss_dssp SS--CCHHHHHTSSSS---------SSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS--
T ss_pred CCchhhHHHHhCCCCC---------CCCChHHhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCC
Confidence 5433333333333332 223333334444444432 7999999999 5899999876554433333
Q ss_pred CCHHHHHHHHHHHHHh--CCEEEEehhhhch-hcccCccccccCCCcch--hhhhhhccCCc--cceeeeehHHHHHHhc
Q 017633 158 PKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGL--PVGAYGGRRDIMEMVA 230 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~--~~~li~De~~~~~-~~g~~~~~~~~~~~~di--~s~sK~~~~G~--~iG~v~~~~~~~~~~~ 230 (368)
.+-+.++++++++|+. ++++++|+-|..| -.. +...+..|+ .|+=|..|||+ .-||+++++++++...
T Consensus 172 l~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~-----EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a 246 (403)
T PF06838_consen 172 LTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ-----EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAA 246 (403)
T ss_dssp --HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc-----CccccchhheeccceeCCCCCccCcCCEEechHHHHHHHH
Confidence 3444477788887775 7999999999877 221 223345565 47889999984 5567888999987654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=75.24 Aligned_cols=306 Identities=13% Similarity=0.076 Sum_probs=158.5
Q ss_pred HHHHHHHHHhhCC-CC-CeEEEeCChHHHHHHHHHHHHHh--cC---------CceEEEEcCCCCCCchhhhhhcCCCcc
Q 017633 35 ENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAF--TG---------RERIIKFEGCYHGHADPFLVKAGSGVA 101 (368)
Q Consensus 35 ~~~l~~~l~~~~~-~~-~~v~~~~~gt~a~~~al~~~~~~--~~---------~~~vi~~~~~~~~~~~~~~~~~~~~~~ 101 (368)
+.++-..+.++.+ +. .+-+|++||+-++.-++.+++.- ++ .+.|+....--|-+...+....|-+..
T Consensus 143 E~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd 222 (510)
T KOG0629|consen 143 EEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTD 222 (510)
T ss_pred hHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCc
Confidence 3455555556555 22 47889999999999999877621 11 244555555556665555555554321
Q ss_pred ccCCCCCCCCCCCCCCcccccCCC-----CHHHHHHHHHcCCCC---eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 102 TLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
. ++.++.+ ++++||+.|.+.+.+ +..+-+.......|..-| ++.|+++|++|
T Consensus 223 ~----------------c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~ 282 (510)
T KOG0629|consen 223 H----------------CIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADICEKH 282 (510)
T ss_pred e----------------eEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHHHHhc
Confidence 0 1112211 699999999864333 333333333333576666 99999999999
Q ss_pred CCEEEEehhhhc-h-hcccCccccccCCC-cchhhhh--hhccCCccceeeeehH-HHHHHhcCCCC--------ccccc
Q 017633 174 GALLIFDEVMTG-F-RLAYGGAQEYFGVT-PDLTTLG--KIIGGGLPVGAYGGRR-DIMEMVAPAGP--------MYQAG 239 (368)
Q Consensus 174 ~~~li~De~~~~-~-~~g~~~~~~~~~~~-~di~s~s--K~~~~G~~iG~v~~~~-~~~~~~~~~~~--------~~~~~ 239 (368)
++++++|.+..| + -.... -..-.|+. .+-+|.+ |.++.++.++..+.++ .+.....+... .+..+
T Consensus 283 ~lWmHvDAAwGGglLmS~k~-R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS 361 (510)
T KOG0629|consen 283 KLWMHVDAAWGGGLLMSRKH-RHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVS 361 (510)
T ss_pred CEEEEeecccccccccChhh-HhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecc
Confidence 999999998854 2 11110 00112221 2333333 8888889999987765 44443332111 11111
Q ss_pred cCCCC----------HHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 240 TLSGN----------PLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 240 t~~~~----------~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
--+++ .+-.-..+.+- ..+ ...++..++++++..++++... .........-.+-+.++..+
T Consensus 362 ~DTgdK~iQCGRh~D~FKlWlmwkaK---G~~Gfe~~v~k~~~lA~yl~~~lrer~~---~~~l~~~~pe~~nv~fw~vp 435 (510)
T KOG0629|consen 362 YDTGDKAIQCGRHVDVFKLWLMWKAK---GTQGFEAQVDKCLRLAEYLYDRLREREG---FEMLFELEPEHVNVCFWYVP 435 (510)
T ss_pred cccccchhhcCccccHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHhccc---ceehhcCCCceEEEeeccCc
Confidence 00111 11111111111 122 2467788889999999887521 11111111112222222211
Q ss_pred CcccchhcccccH-----HHHHHHHHHHHcCe---eecCCCCC--cccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETT-----KFARFYRGMLEEGV---YFAPSQFE--AGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~-----~~~~~~~~l~~~Gi---~~~~~~~~--~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..-..+...++.. -+..+-..++++|- -..|.+.. .+|+ +.+.+.+|++-+++.|.++-+.
T Consensus 436 ~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 436 PSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred hHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 1111111111111 12244566777773 23343322 2232 4466889999999999887543
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-08 Score=82.89 Aligned_cols=279 Identities=11% Similarity=0.030 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHhhC---C----CCCeEEEeCChHHHHHHHHHHHHHh---c-CCceEEEEcCCCCCCchhhhhhcCCCcc
Q 017633 33 LLENVLAEMVISAV---P----SIEMVRFVNSGTEACMGVLRLARAF---T-GRERIIKFEGCYHGHADPFLVKAGSGVA 101 (368)
Q Consensus 33 ~~~~~l~~~l~~~~---~----~~~~v~~~~~gt~a~~~al~~~~~~---~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 101 (368)
-...+|.+.+.+++ + +...+++..|.|+-+++|+..+... . +.-+|+...|-| ..+......
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY-~~Y~~qt~~------ 115 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYY-SSYPEQTDF------ 115 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS---CHHHHHCCC------
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCc-cchHHHHHh------
Confidence 34667777777765 2 4578888888888888877443221 1 233455544433 321111110
Q ss_pred ccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 102 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
++.. .+.+. +|..... -+.++...-=+++.|+|+-+.. . +. +++.-+..+|.|-
T Consensus 116 ------f~s~-------~y~w~-Gda~~~~--~~~~~~~~IElVTSPNNPDG~l-r------~~---V~~g~~~k~I~D~ 169 (363)
T PF04864_consen 116 ------FDSR-------LYKWA-GDASNFK--NSDNPSPYIELVTSPNNPDGQL-R------EA---VLNGSSGKVIHDL 169 (363)
T ss_dssp ------T-BT-------TEEEE-EECCCGT--T-S-CCGEEEEEESS-TTT----------------SSTTTEEEEEEE-
T ss_pred ------cccc-------Ccccc-ccHHhhc--cCCCCCCeEEEEeCCCCCcccc-c------ch---hcCCCCcceeeee
Confidence 0000 00000 0111111 0011234455667776654432 1 11 2355567789999
Q ss_pred hhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHH
Q 017633 182 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 258 (368)
Q Consensus 182 ~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~ 258 (368)
+|-.= ++.-.. ..+.+.=+.|+||.=| +|.|+||.++. +++.+.+. .+...+|.+++-=+|.-++..++.+
T Consensus 170 AYYWPhyTpI~~---~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~---~y~~lnTiGvS~dsQLRa~kiLk~v 243 (363)
T PF04864_consen 170 AYYWPHYTPITA---PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMT---KYMELNTIGVSRDSQLRALKILKVV 243 (363)
T ss_dssp TT-STTTS---S----B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHH---HHHHHHCSS--HHHHHHHHHHHHHH
T ss_pred eeecccccccCC---CCCCceEEEEEecccCccccccceeeecCHHHHHHHH---HHHHHhcccCcHHHHHHHHHHHHHH
Confidence 98421 111111 1222222569999999 89999999775 56666665 4556688888866666666666554
Q ss_pred cc--------CCHHHHHHHHHHHHHHHHHHHHHhcCCce--------------EEeeccceEEEEeecCCCcccchhccc
Q 017633 259 KE--------PGTYEYLNKITGELTQGIIDAGKKAGHAI--------------CGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 259 ~~--------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.+ +++.+.-++..+...++|++++....... ...+...+.|+.+..
T Consensus 244 ~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~------------ 311 (363)
T PF04864_consen 244 LDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCER------------ 311 (363)
T ss_dssp HHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESS------------
T ss_pred HhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCC------------
Confidence 32 13555555566666666666654332110 112234566777642
Q ss_pred ccHHHHHHHHHHHHcCeeecCCC-----CCccccccCCCHHHHHHHHHHHHHH
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~-----~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
+. ..+-...|++.||.-+.|. ..++|+++..++++-+.++++|.+.
T Consensus 312 -ee-d~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 312 -EE-DEDCYAVLREAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp -CG-GSSHHHHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred -cc-cccHHHHHHhCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 21 1455677788899988773 3356889999999999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-05 Score=66.31 Aligned_cols=316 Identities=13% Similarity=0.046 Sum_probs=162.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh---cCCceEEEEcCCCCCCch-hhhhhcCCCccccCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHAD-PFLVKAGSGVATLGL 105 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~---~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~ 105 (368)
..+.....|++...+.++ .+.++-+.-|..|-+..+..+... -++ .+.+..+++|..+. +-....|......+.
T Consensus 76 agsrs~~~L~~avkdifG-fq~~iPthQGRgAE~Il~~i~ik~~~~~pg-~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~ 153 (471)
T COG3033 76 AGSRSYYALADAVKDIFG-FQYTIPTHQGRGAENILIPILIKKGEQEPG-SKMVAFSNYHFDTTRGHIQINGATPRNVYV 153 (471)
T ss_pred cccccHHHHHHHHHHhcC-ceeeeeccCCccHHHHHHHHHhhhccccCC-ccccccccceecchhHHHHhcCCccccccc
Confidence 345667889999999885 567788888877766665333321 123 34444445555433 333333332211111
Q ss_pred CCCCCCCCCCCCcccccCCC---CHHHHHHHHHc-CCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 017633 106 PDSPGVPKGATYETLTAPFN---DVSALENLFEN-NKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~---d~~~le~~~~~-~~~~~~~~~-~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~D 180 (368)
+.- ....+..|+. |++.|+++|.+ +.+++..++ +.++|+.+|. .-+-+-++++.++|++|++.++.|
T Consensus 154 ~ea-------~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQ-pVSm~n~r~v~~ia~ky~ipvv~D 225 (471)
T COG3033 154 DEA-------FDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQ-PVSMANMKAVYEIAKKYDIPVVMD 225 (471)
T ss_pred ccc-------ccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCC-cchHHhHHHHHHHHHHcCCcEEee
Confidence 110 0111123322 89999999997 445555443 3444444454 444445999999999999999999
Q ss_pred hhh----hch-hcccCccccccCC---Ccchhhhhhhcc-----CC-ccceee-eehHH----HHHHhcCCCCcccc-cc
Q 017633 181 EVM----TGF-RLAYGGAQEYFGV---TPDLTTLGKIIG-----GG-LPVGAY-GGRRD----IMEMVAPAGPMYQA-GT 240 (368)
Q Consensus 181 e~~----~~~-~~g~~~~~~~~~~---~~di~s~sK~~~-----~G-~~iG~v-~~~~~----~~~~~~~~~~~~~~-~t 240 (368)
.+- +.| ...+.. ...|.+ .-++.+..-++. -| ..+|.+ +.+++ +...++.....+.+ .|
T Consensus 226 a~RfaENaYFIk~rE~g-Yrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~t 304 (471)
T COG3033 226 AARFAENAYFIKQREPG-YRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPT 304 (471)
T ss_pred hhhhhhhhhhhhhcCcc-cccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCccHHHHHHHHHhheEeeccccc
Confidence 765 112 111110 111211 011223322221 13 356655 44544 44444432221121 22
Q ss_pred CC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 241 LS-GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 241 ~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
++ .+--.+.+....|....+.+|+++...-.++|.+.|++ .+++..-+..|+-+.++...-.+. .|...
T Consensus 305 YGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~----~GVpi~~paGGHavfvda~~~lph------ip~eq 374 (471)
T COG3033 305 YGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEE----AGVPIVQPAGGHAVFVDAGKFLPH------IPAEQ 374 (471)
T ss_pred cCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh----cCCeeEecCCCceEEeehhhhcCC------CChhh
Confidence 22 12223344444554444566777777778888877777 466655555566555554332110 01111
Q ss_pred -HHHHHHHHHH-HcCeeecCCCCCc-----------------cc---cccCCCHHHHHHHHHHHHHHHh
Q 017633 320 -KFARFYRGML-EEGVYFAPSQFEA-----------------GF---TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 320 -~~~~~~~~l~-~~Gi~~~~~~~~~-----------------~~---~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
-++.|+-.|- +.||....-|... ++ +...-|.++++..++.++++.+
T Consensus 375 Fpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 375 FPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred CcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence 1355665554 5577665432111 12 2334477899999999988764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-06 Score=81.79 Aligned_cols=277 Identities=10% Similarity=0.117 Sum_probs=147.0
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC-CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCC
Q 017633 35 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 112 (368)
Q Consensus 35 ~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (368)
..++...++++.+ +.....+..++|.+.+.+++..+...+ +++|++ +.+-|..+...+....
T Consensus 111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv-~~~~hP~~~~v~~t~a--------------- 174 (939)
T TIGR00461 111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFV-AKDLHPQTKSVLHTRA--------------- 174 (939)
T ss_pred HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEE-CCCCCcchHHHHHHHH---------------
Confidence 3466677778776 555666677788888866554332222 345555 4455554332222110
Q ss_pred CCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCc
Q 017633 113 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192 (368)
Q Consensus 113 ~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~ 192 (368)
...+.+++.+ |+++|++.+ +++++++ .+++..|.+.+ +++|.+++|++|.+++++--...+ +-..
T Consensus 175 ~~~g~~v~~~---~~~~l~~~~-----~~~~v~~-q~Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al--~ll~ 239 (939)
T TIGR00461 175 KPFGIEVIVV---DCSDIKKAV-----DVFGCLL-QYPATDGSILD----YKQLIDALHSHKSLVSVAADLMAL--TLLT 239 (939)
T ss_pred HhcCcEEEEE---cHHHHhhcC-----CEEEEEE-ECCCCCeEEec----HHHHHHHHHHcCCEEEEEechHHh--CCcC
Confidence 0112223333 455555444 3554444 44455787776 999999999999999996444221 1111
Q ss_pred cccccCCCcchh-hhhhhc----c-CCccceeeeehHHHHHHhcCC--C--------C-ccc--------------cccC
Q 017633 193 AQEYFGVTPDLT-TLGKII----G-GGLPVGAYGGRRDIMEMVAPA--G--------P-MYQ--------------AGTL 241 (368)
Q Consensus 193 ~~~~~~~~~di~-s~sK~~----~-~G~~iG~v~~~~~~~~~~~~~--~--------~-~~~--------------~~t~ 241 (368)
....+|. |++ ..+|.| + ||...|++.+++++.+.+..+ + + +.. .++.
T Consensus 240 ~Pge~Ga--Di~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNI 317 (939)
T TIGR00461 240 PPGHYGA--DIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNI 317 (939)
T ss_pred CHHHcCC--cEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcch
Confidence 1222333 553 233444 4 466688999999888776521 1 0 000 0111
Q ss_pred CCCHHHHHHHHHH-HHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 242 SGNPLAMTAGIHT-LKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 242 ~~~~~~~~a~~~~-l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+.++...+..... +..+..+++ .++...+..++.+.|.+. ++..... ..|-.+.+.. .
T Consensus 318 Ct~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~----G~~~~~~--~fF~~~~v~~------------~ 379 (939)
T TIGR00461 318 CTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND----PHELINK--TWFDTLTVKV------------G 379 (939)
T ss_pred hHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCC--CccceEEEEe------------C
Confidence 1222222211111 244444443 344555666666666553 3221111 2222222221 1
Q ss_pred cHHHHHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHHH
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~ 362 (368)
.....++.+.+.++||.++...... +++.-..+++|++.+++.+.
T Consensus 380 ~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 380 NGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 1125789999999999988754333 34566779999999999884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-06 Score=72.49 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=116.0
Q ss_pred EEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCCCHHHH
Q 017633 52 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSAL 130 (368)
Q Consensus 52 v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 130 (368)
.+-+-|||.|+..+......+-.+..|.+..++... ........|-. +....+-+... .. -|++.+
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~n-H~~if~~aGf~tv~~Y~yWd~~~---------k~---~d~e~~ 168 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWEN-HHAIFEKAGFTTVATYPYWDAEN---------KC---VDLEGF 168 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcccceeEecCCchhH-HHHHHHHcCCceeeeeeeecCCC---------ce---ecHHHH
Confidence 455668999999998443333344456665655543 34444444422 21111111111 00 167777
Q ss_pred HHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCC------Ccc--
Q 017633 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV------TPD-- 202 (368)
Q Consensus 131 e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~------~~d-- 202 (368)
-..+...|+.-..++.-..++++| .-|+.|++..|++..++.+.+.+.|-+|.||..|.. ..+.|.+ ..+
T Consensus 169 Lsdl~~APe~si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~-~~DawAiR~fV~~g~e~f 246 (410)
T KOG1412|consen 169 LSDLESAPEGSIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDL-DADAWAIRYFVEQGFELF 246 (410)
T ss_pred HHHHhhCCCCcEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCc-cccHHHHHHHHhcCCeEE
Confidence 777765543333444444444444 577788899999999999999999999999843332 2233321 111
Q ss_pred -hhhhhhhcc-CCccceee--ee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc----CCHH---HHHHHH
Q 017633 203 -LTTLGKIIG-GGLPVGAY--GG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTY---EYLNKI 270 (368)
Q Consensus 203 -i~s~sK~~~-~G~~iG~v--~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~----~~~~---~~~~~~ 270 (368)
..||+|.|| -+-|+|-+ ++ ++..+..+...-....-++++ .+.++.|..+-+.+.+ ++|. +.+..|
T Consensus 247 v~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~S--NPPAyGArIV~kvL~tP~lre~W~~sik~MssR 324 (410)
T KOG1412|consen 247 VCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS--NPPAYGARIVHKVLSTPELREQWIQSIKTMSSR 324 (410)
T ss_pred EEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccC--CCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 248999999 57788865 33 344444333110111113332 1223333434455544 3332 334445
Q ss_pred HHHHHHHHHHHHHhcC
Q 017633 271 TGELTQGIIDAGKKAG 286 (368)
Q Consensus 271 ~~~l~~~l~~~~~~~~ 286 (368)
....|.+|.+.+..++
T Consensus 325 I~~MR~aLrd~L~aL~ 340 (410)
T KOG1412|consen 325 IKKMRTALRDHLVALK 340 (410)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5555555655555444
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=67.54 Aligned_cols=316 Identities=17% Similarity=0.179 Sum_probs=164.9
Q ss_pred cHHHHHHHHHHHHc-------CCCCCCCChhHHHH---H-HHHHhhCC-C---CCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 11 YLQVLAALGETMKK-------GTSFGAPCLLENVL---A-EMVISAVP-S---IEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 11 ~~~v~~a~~~~~~~-------~~~~~~~~~~~~~l---~-~~l~~~~~-~---~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
+..|.+++...+.+ +..|+..++...++ . ++-.+.|+ + ..--+-.-||+.|+-.+.... ..++
T Consensus 53 s~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal--l~Ph 130 (477)
T KOG2467|consen 53 SRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL--LKPH 130 (477)
T ss_pred HHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh--cCCC
Confidence 44577777777665 12233344433322 2 22223343 2 222334457999887776544 3578
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC----CHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
++|.-.+-.-.|+........+.++-..+. .+..++ +.++.. |.|.||+..... +++++++-..
T Consensus 131 ~RiMGLDLP~GGHLsHGy~T~~kkISa~Si-yFeSmP-------Ykv~~~TG~IDYD~Le~~A~~f--rPk~iiaG~S-- 198 (477)
T KOG2467|consen 131 ERIMGLDLPSGGHLSHGYQTPTKKISATSI-YFESMP-------YKVDPSTGYIDYDKLEKTATLF--RPKLIIAGTS-- 198 (477)
T ss_pred CeeeeccCCCCCccccccccCCceeeeeee-ecccCc-------eeeCCCCCceehHHHHHHHHhc--CCcEEEeccc--
Confidence 889888776666655444444433211110 011111 111111 789999888754 6777777332
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hccc-CccccccCCCcchhhh--hhhccCCccceeeeehHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAY-GGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~-~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~~~~~ 226 (368)
......+ ..+++++|++.|.+|++|=+| +|+ ..+. ...+++. |++|. -|++- |.|.|.++.++.+.
T Consensus 199 aY~R~~D----YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~----DiVTTTTHKsLR-GPRg~mIFyRkGvk 269 (477)
T KOG2467|consen 199 AYSRLID----YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC----DIVTTTTHKSLR-GPRGAMIFYRKGVK 269 (477)
T ss_pred cchhhcc----HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----ceeecccccccc-CCcceeEEEeccCC
Confidence 2333444 899999999999999999999 666 3332 2233332 56544 47776 44777776665332
Q ss_pred HHhcCCC----------------CccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 227 EMVAPAG----------------PMYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 227 ~~~~~~~----------------~~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
..-...+ +..++ ++....+++...+|+...+.+ +.+.+.++++.+.++|.+. +.
T Consensus 270 ~~~~k~g~~i~ydlE~kINfaVFP~lQG---GPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~----Gy 342 (477)
T KOG2467|consen 270 SIKPKQGKEILYDLEDKINFAVFPGLQG---GPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR----GY 342 (477)
T ss_pred cCCCCCCCcceechhhhhhhhccccccC---CCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc----Cc
Confidence 1110000 11122 223344555555677665544 4566777777777777664 33
Q ss_pred ceEEeec-cceEEEEeecCCCcccchhcccccHHHHHH---HHHHHHcCe------eecCCCCCcccc---ccCCCHHHH
Q 017633 288 AICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARF---YRGMLEEGV------YFAPSQFEAGFT---SLAHSSDDI 354 (368)
Q Consensus 288 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~Gi------~~~~~~~~~~~~---~~~~~~~~i 354 (368)
.....+. .+++.+++++... ++...+.+ +....++.- .+.|+|-....+ +-...++|.
T Consensus 343 ~lvtgGTDnHlvLvDLr~~G~---------dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df 413 (477)
T KOG2467|consen 343 KLVTGGTDNHLVLVDLRPKGV---------DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDF 413 (477)
T ss_pred eEecCCccceEEEEeccccCC---------chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHH
Confidence 2222222 3466777764322 22222322 233333322 223333221222 334577888
Q ss_pred HHHHHHHHHHH
Q 017633 355 QHTITAAEKVL 365 (368)
Q Consensus 355 ~~~~~~l~~~l 365 (368)
++..+-|.+++
T Consensus 414 ~~v~~fi~~av 424 (477)
T KOG2467|consen 414 EKVADFIDRAV 424 (477)
T ss_pred HHHHHHHHHHH
Confidence 88888777664
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-06 Score=73.99 Aligned_cols=289 Identities=11% Similarity=0.044 Sum_probs=143.7
Q ss_pred CCCeEEEeCChHHHHHHH-HHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccC-CCCCCCCCCCCCCcccccCCC
Q 017633 48 SIEMVRFVNSGTEACMGV-LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFN 125 (368)
Q Consensus 48 ~~~~v~~~~~gt~a~~~a-l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 125 (368)
+....++.+-+|---... +...+ ..+..+.++.+.--|.+...++...|-.....+ .... +....
T Consensus 73 ~~~~~~~vP~atgm~l~l~l~~l~-~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~---------d~l~t--- 139 (389)
T PF05889_consen 73 SVKSCFVVPMATGMSLTLCLLALR-MRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEG---------DELIT--- 139 (389)
T ss_dssp THCEEEEESS-HHHHHHHHHHHHH-HHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEET---------TEEEE---
T ss_pred cccceEEEecccccHHHHHHHHHh-cccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCC---------Ceeec---
Confidence 356677887555332222 23333 334445555566667766666666655432211 1100 11111
Q ss_pred CHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch--hc-ccCccccccCCC-c
Q 017633 126 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RL-AYGGAQEYFGVT-P 201 (368)
Q Consensus 126 d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~--~~-g~~~~~~~~~~~-~ 201 (368)
|.+++|+.+++..+...+.++.......+...+. +++|+++|++||++.++..||.== .. ...-.....|.. .
T Consensus 140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~D~---i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda 216 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLPDD---IEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDA 216 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSE
T ss_pred cHHHHHHHHHHhCCCCeEEEEEecCccCCCCCcc---HHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcce
Confidence 6889999998633444555555555555554442 899999999999999999999410 00 000000112443 3
Q ss_pred chhhhhhhccCCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHH
Q 017633 202 DLTTLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQG 277 (368)
Q Consensus 202 di~s~sK~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 277 (368)
++-+..|-|--|.+-+.+.+ ++..+..+...-+..-+.+ + ..- ....+..+.. ..++....+...++.++
T Consensus 217 ~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~s---p--~ld-~~itLl~LG~~g~~~ll~~r~~~f~~l~er 290 (389)
T PF05889_consen 217 FVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASAS---P--SLD-LFITLLSLGCTGYGALLKERKASFPYLKER 290 (389)
T ss_dssp EEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTSH---H--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhcc---c--chH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44578899873332333333 4556665542111111111 1 111 1222222222 33567788888888899
Q ss_pred HHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeee----cCCCC-----------C
Q 017633 278 IIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF----APSQF-----------E 341 (368)
Q Consensus 278 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~----~~~~~-----------~ 341 (368)
|++...+.+... ..+.....+.+.+..-. . ....+.-.|...|..+||.- .+.+. +
T Consensus 291 l~~~aee~~e~ll~~p~N~is~a~tl~~l~--~------~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~ 362 (389)
T PF05889_consen 291 LKKWAEEVGERLLETPRNHISMAFTLDTLY--E------ISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCP 362 (389)
T ss_dssp HHHHHHHTTEEBSSSTT-SSEEEEE-TTCC--T------CCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSS
T ss_pred HHHHHHHhhhhhcCCCCCCeeEEEECccch--h------hccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchH
Confidence 988877665221 11111223344442110 0 01134567888898885432 22211 1
Q ss_pred cccc--ccCCCHHHHHHHHHHHHHHHh
Q 017633 342 AGFT--SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 342 ~~~~--~~~~~~~~i~~~~~~l~~~l~ 366 (368)
++.+ .+.+++||++.++++|+++++
T Consensus 363 Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 363 YLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1111 467799999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=77.35 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=125.0
Q ss_pred hHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCC
Q 017633 34 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 112 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (368)
...++...++++.+ +-...-+-.+++.+-+.++...+...++.+.++.+.+-|+.+...+.....
T Consensus 111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~-------------- 176 (429)
T PF02347_consen 111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAA-------------- 176 (429)
T ss_dssp HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhh--------------
Confidence 34577777888776 433345556777777766655544433334555566677765544333211
Q ss_pred CCCCCcccccCCCC--HHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc
Q 017633 113 KGATYETLTAPFND--VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189 (368)
Q Consensus 113 ~~~~~~~~~~~~~d--~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g 189 (368)
..+.+++.++.++ ..+ .++++++++..+ +..|.+-+ +++|.+++|++|.++++ -+- . ..+
T Consensus 177 -~~g~~iv~~~~~~~~~~d--------~~~~a~v~vq~P-n~~G~~ed----~~~i~~~~h~~gal~~~-~ad--~~aL~ 239 (429)
T PF02347_consen 177 -PLGIEIVEVPLDEDGTTD--------DDDTAAVMVQNP-NTFGVFED----IKEIADIAHAAGALVIV-GAD--PNALG 239 (429)
T ss_dssp -HCCEEEEEE-BBTTCSB---------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGG--CCGCC
T ss_pred -hCCeEEEEecccccCCcc--------ccCeEEEEeecC-CCCceEee----HHHHHHHHHHcCCEEEE-ecC--HHHHh
Confidence 1122333333221 111 257777777544 44677777 99999999999999887 332 1 122
Q ss_pred cCccccccCCCcchh-----hhhhhcc-CCccceeeeehHHHHHHhcCC---------CC-c---------------ccc
Q 017633 190 YGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA---------GP-M---------------YQA 238 (368)
Q Consensus 190 ~~~~~~~~~~~~di~-----s~sK~~~-~G~~iG~v~~~~~~~~~~~~~---------~~-~---------------~~~ 238 (368)
..-....+|. |++ +|+=.++ ||-..|++.+++++++.+..+ +. . .-.
T Consensus 240 ~l~~Pge~GA--DI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAt 317 (429)
T PF02347_consen 240 GLKSPGEYGA--DIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKAT 317 (429)
T ss_dssp TC--GGGGT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCST
T ss_pred CcCChhhcCc--cEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchh
Confidence 2222223444 543 3444444 567899999999888776521 10 0 001
Q ss_pred ccCCCCHHHHHH-HHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 239 GTLSGNPLAMTA-GIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 239 ~t~~~~~~~~~a-~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
+..+.++..++. +..-+..+..++ ..+....++.+++++|.+. ....+ ... .+.-+....
T Consensus 318 SNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~----~~~-~f~e~v~~~---------- 381 (429)
T PF02347_consen 318 SNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPF----DNP-FFFEFVVVF---------- 381 (429)
T ss_dssp T---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECS----SSS-SBSSEEEEE----------
T ss_pred hhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCccc----CCC-Cceeeeeec----------
Confidence 333444443332 222334444444 3456777777777777664 11111 111 111111111
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCc--cccccCCCHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEA--GFTSLAHSSDDIQHTITAA 361 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~--~~~~~~~~~~~i~~~~~~l 361 (368)
.......++.+.+...|+......... +++.-..+++||+++++.+
T Consensus 382 -~~~~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 382 -SKDKEVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -SS-HHHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred -CCcHHHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 011233345566666675554333222 2344556889999998764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=68.68 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=100.8
Q ss_pred CCCChhHHHHHHHHHhhC-CC------CC--eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCC
Q 017633 29 GAPCLLENVLAEMVISAV-PS------IE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 99 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~-~~------~~--~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 99 (368)
+.|.....++.+.-+++. ++ .+ ...-+-|||-|+..+-.....+-+...|.+.+|+...+ --.....|..
T Consensus 91 YlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh-~~if~~ag~~ 169 (427)
T KOG1411|consen 91 YLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNH-KNIFKDAGLP 169 (427)
T ss_pred hccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCccccc-CccccccCcc
Confidence 445556667777766654 21 12 23446689999998885555555566676666655433 2222222222
Q ss_pred c-cccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 017633 100 V-ATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 177 (368)
Q Consensus 100 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~l 177 (368)
+ .+.++ +...+. |.+.+-+-+.+.++.- .+++-.-..|++.+-|+.|.+++|.++.++.+.+-
T Consensus 170 ~~~yrYyd~~t~gl--------------d~~g~ledl~~~p~gs-~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~p 234 (427)
T KOG1411|consen 170 VKFYRYYDPKTRGL--------------DFKGMLEDLGEAPEGS-IILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLP 234 (427)
T ss_pred eeeeeecccccccc--------------chHHHHHHHhcCCCCc-EEEeehhhcCCCCCCccHHHHHHHHHHhhhccccc
Confidence 2 11111 222222 6666555565543332 33333333444557888899999999999999999
Q ss_pred EEehhhhchhcccCccccccC------CCcch---hhhhhhcc-CCccceee
Q 017633 178 IFDEVMTGFRLAYGGAQEYFG------VTPDL---TTLGKIIG-GGLPVGAY 219 (368)
Q Consensus 178 i~De~~~~~~~g~~~~~~~~~------~~~di---~s~sK~~~-~G~~iG~v 219 (368)
+.|-+|.||-.|.. ..+.+. ..-++ .||+|.+| =|-|+|.+
T Consensus 235 ffDmAYQGfaSG~~-d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 235 FFDMAYQGFASGDL-DKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred hhhhhhcccccCCc-hhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 99999998833321 111111 11122 37899998 46788876
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0019 Score=56.45 Aligned_cols=323 Identities=15% Similarity=0.052 Sum_probs=160.2
Q ss_pred CCceeccCCCc----HHHHHHHHHHHHcCCCCCC-----------CChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHH
Q 017633 1 MPQLIILFPSY----LQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACM 63 (368)
Q Consensus 1 ~~~~~~~g~~~----~~v~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~ 63 (368)
|+..-+|+.+| |+|++.+.+.+.+....|. ......+.++.++++++ +...|+|+.+|..+--
T Consensus 3 ~~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf 82 (365)
T COG1932 3 MPRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQF 82 (365)
T ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHH
Confidence 34556676654 5666666655554222111 12455677777888875 5678888877765554
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE
Q 017633 64 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 64 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~ 143 (368)
.++.+.. ..++..--+..+++..........-+..... . .......+.-.+| +++..+ +. ++.+.
T Consensus 83 ~~~p~nL-l~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~------~-~~~~~~~~~~~iP--~~~~~~--~~---~~~ay 147 (365)
T COG1932 83 AMAPMNL-LGKRGTDYVDTGAWSEFAIKEAKKVGKQPKL------I-DARIEEAGYGSIP--DLSKWD--FS---DNDAY 147 (365)
T ss_pred HHHHHhh-hcccCceeEeeeehhHhHHHHHHHhcccccc------c-ccceeccCccCCC--Chhhcc--cC---CCccE
Confidence 4442221 1122110333333322211211111111000 0 0000011111122 333322 22 23445
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhh--hhhcc-CCccceeee
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIG-GGLPVGAYG 220 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~--sK~~~-~G~~iG~v~ 220 (368)
++..++....|...++.. .+.. +.++++|-.-.-+ +....+..+ |++.+ .|.+| .| ++.++
T Consensus 148 v~~~~NeTi~Gv~v~~~p------~~~~--~~~~v~D~SS~il--sr~iDvsk~----dviyagaQKnlGpaG--ltvvI 211 (365)
T COG1932 148 VHFCWNETISGVEVPELP------DIGS--DGLLVADASSAIL--SRPIDVSKY----DVIYAGAQKNLGPAG--LTVVI 211 (365)
T ss_pred EEEecCCcccceEccCCC------CCCC--CceEEEecccHHh--cCCCChhHc----ceEEEehhhccCccc--eEEEE
Confidence 777777666777666422 1111 1788999544311 111111111 44444 49998 46 88889
Q ss_pred ehHHHHHHhcCC-CC--------ccccccCC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 221 GRRDIMEMVAPA-GP--------MYQAGTLS-GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 221 ~~~~~~~~~~~~-~~--------~~~~~t~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
.++++.+..... .+ ...++++. ++.++.+.+..+++.+...+=++.+.++-+.-.+.|.+...+.++...
T Consensus 212 vr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~ 291 (365)
T COG1932 212 VRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRN 291 (365)
T ss_pred EcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 999988877643 11 12234444 345566667777787766443344444444444555554443332211
Q ss_pred ---Eeecc-ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--ccc--cccCCCHHHHHHHHHHHH
Q 017633 291 ---GGYIS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGF--TSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 291 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~~--~~~~~~~~~i~~~~~~l~ 362 (368)
..... .-+.|.+. +......|...+.++|+..--|..- ..| +--.++.++++.+++-++
T Consensus 292 ~v~~~~RS~mnV~f~~~-------------~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~ 358 (365)
T COG1932 292 LVAKANRSRMNVTFTLV-------------DAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMD 358 (365)
T ss_pred ccchhhccceeEEEEcC-------------cHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHH
Confidence 11111 12233331 3344577888888888777655211 133 334669999999999998
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
.+.++
T Consensus 359 ~f~~~ 363 (365)
T COG1932 359 WFEET 363 (365)
T ss_pred HHHHh
Confidence 87654
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00024 Score=63.65 Aligned_cols=320 Identities=15% Similarity=0.111 Sum_probs=165.0
Q ss_pred cHHHHHHHHHHHHcC-----CCCCCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhc----C-CceE
Q 017633 11 YLQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFT----G-RERI 78 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~----~-~~~v 78 (368)
+++..+-+.+.+.+. ..|+...+...+....++..+.+ ..--..|.|||++...+.+.-+... + ...-
T Consensus 93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~ 172 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPN 172 (491)
T ss_pred CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCcc
Confidence 444444444444441 22444566777888888888863 2344567788899666664433221 1 1112
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++...+.|.....+...-+..+...++...+... |+..+.+.++ +++..++.+-.+-+.|..-+
T Consensus 173 iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~-------------D~~k~~~~i~---eNti~lv~~~~~~p~G~~e~ 236 (491)
T KOG1383|consen 173 IVTPQNVHAAFEKAARYFEVELREVPLDEGDYRV-------------DPGKVVRMID---ENTIMLVGSLPNFPTGEIED 236 (491)
T ss_pred ccchHHHHHHHHHHHhhEEEEEEeeeccccceEe-------------cHHHHHHHhc---cceEEEEEEcCCCCccchhh
Confidence 2223233322222222112222222221111111 7888888887 47888888777777777777
Q ss_pred CHHHHHHHHHHHHH-hCCEEEEehhhhch-hcccCccccccCCC-cchhhhh---hhcc-CCccceeeee-hHHHH-HHh
Q 017633 159 KPDFLNAIRRITKE-NGALLIFDEVMTGF-RLAYGGAQEYFGVT-PDLTTLG---KIIG-GGLPVGAYGG-RRDIM-EMV 229 (368)
Q Consensus 159 ~~~~l~~i~~l~~~-~~~~li~De~~~~~-~~g~~~~~~~~~~~-~di~s~s---K~~~-~G~~iG~v~~-~~~~~-~~~ 229 (368)
+++|.++..+ +++++.+|..-.|| -.........|+.. |-+.+.| --+| ..-.+||++- ++++. +.+
T Consensus 237 ----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~ 312 (491)
T KOG1383|consen 237 ----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQL 312 (491)
T ss_pred ----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceE
Confidence 9999999999 99999999888877 32111222344442 3333332 1122 2224677743 44432 222
Q ss_pred c----CCCCccccccCCCCHH--HHHHHHHHHHHHccCCHH---HHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 230 A----PAGPMYQAGTLSGNPL--AMTAGIHTLKRLKEPGTY---EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 230 ~----~~~~~~~~~t~~~~~~--~~~a~~~~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
. ..+..+-+.|...|-. ..++..+++-.+..++++ +++.++...+++.+++. +....+. .+.+.+
T Consensus 313 ~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i----~~i~i~g--kp~vs~ 386 (491)
T KOG1383|consen 313 FFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENI----KGIKIVG--KPLVSF 386 (491)
T ss_pred EEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcc----ccceecC--CCcEEE
Confidence 1 1122222333333322 223333444444445543 45666666666666663 2111111 144455
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC---ccccc-cCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---AGFTS-LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~---~~~~~-~~~~~~~i~~~~~~l~~~l~~ 367 (368)
....+. .-+.-++.+.|.++|-.+-.-..| ++++. ....++-.++++.-|++++.+
T Consensus 387 ~~~~s~-----------~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e 446 (491)
T KOG1383|consen 387 ILFGSN-----------DVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEE 446 (491)
T ss_pred EEccCC-----------ccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence 444322 122467889999998777554333 23332 233444468888888888765
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00019 Score=60.59 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=113.8
Q ss_pred CCCCCCChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccc
Q 017633 26 TSFGAPCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 102 (368)
Q Consensus 26 ~~~~~~~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 102 (368)
+.||+-+..++.|.+-+++.++ . .-+..+. |||-|+-+++.-. .+++|..+...++=+-...-.+.+.+.+
T Consensus 58 tGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~--LRpgDell~i~G~PYDTLeevIG~rg~~--- 131 (416)
T COG4100 58 TGYGYDDLGRDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFGI--LRPGDELLYITGSPYDTLEEVIGLRGEG--- 131 (416)
T ss_pred CCCCccccchhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHhc--cCCCCeEEEecCCcchhHHHHhccCCCC---
Confidence 4577777788899999999997 2 3455566 6999999988544 3567777776554333222222222221
Q ss_pred cCCCCCCCCCCCCCCcccccCCC-----CHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC--CHHHHHHHHHHHHHh--
Q 017633 103 LGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAP--KPDFLNAIRRITKEN-- 173 (368)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~l~~i~~l~~~~-- 173 (368)
.+-....+.....+|.. |.+.++..++ ++++++.+.-..+-. +-| +-+.++++..+.++-
T Consensus 132 ------~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~GY~--~RpS~~I~eI~~~i~~vk~inp 200 (416)
T COG4100 132 ------QGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSKGYA--WRPSLSIAEIEEMITFVKEINP 200 (416)
T ss_pred ------cccHHHhCcceeecccccCCcccHHHHHHhcC---ccceEEEEEeccCcC--CCCcccHHHHHHHHHHHHhcCC
Confidence 11111222223333322 7889998888 688888886554321 122 122277777777774
Q ss_pred CCEEEEehhhhch-hcccCccccccCCCcchh--hhhhhccCCc--cceeeeehHHHHHHhc
Q 017633 174 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL--PVGAYGGRRDIMEMVA 230 (368)
Q Consensus 174 ~~~li~De~~~~~-~~g~~~~~~~~~~~~di~--s~sK~~~~G~--~iG~v~~~~~~~~~~~ 230 (368)
++++++|..|..| -. .+...+..|+. |+=|..|||+ .-||+.+.+++++...
T Consensus 201 n~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 201 NVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred CEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 7999999999877 21 12234456765 6779999884 5567788888887654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.001 Score=59.73 Aligned_cols=281 Identities=13% Similarity=0.088 Sum_probs=140.2
Q ss_pred EEeCChHHHHHHHHHHHHHh-----cCC-----------ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCC
Q 017633 53 RFVNSGTEACMGVLRLARAF-----TGR-----------ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 116 (368)
Q Consensus 53 ~~~~~gt~a~~~al~~~~~~-----~~~-----------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (368)
++..++++++..++..++.- ..+ +-|.-...-.|-+.-.+...++.+........+.++
T Consensus 143 viQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~m----- 217 (511)
T KOG0628|consen 143 VIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGM----- 217 (511)
T ss_pred eEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCC-----
Confidence 33446999999998766522 111 223334445555555555555554332222222222
Q ss_pred CcccccCCCCHHHHHHHHHcCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccc
Q 017633 117 YETLTAPFNDVSALENLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 194 (368)
Q Consensus 117 ~~~~~~~~~d~~~le~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~ 194 (368)
+.+.|+++|.+.. .-+..+++-+..+++.+..++ +.+|..+|+++|++|++|.+|+|- .+.+
T Consensus 218 ---------r~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~---l~elg~Vc~~~glWLHVDAAYAGs----a~iC 281 (511)
T KOG0628|consen 218 ---------RGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDE---LEELGPVCREEGLWLHVDAAYAGS----AFIC 281 (511)
T ss_pred ---------CHHHHHHHHHHHHhCCCccEEEEEeecCcccccccc---HHHhcchhhhcCEEEEeehhhccc----cccC
Confidence 5778888877521 134455554544444333332 999999999999999999999753 1122
Q ss_pred ccc-----CC-Ccc-h-hhhhhhccCCccceeeeehHH--HHHH-------hcCC--CCccccccCCCC---HHHHHHHH
Q 017633 195 EYF-----GV-TPD-L-TTLGKIIGGGLPVGAYGGRRD--IMEM-------VAPA--GPMYQAGTLSGN---PLAMTAGI 252 (368)
Q Consensus 195 ~~~-----~~-~~d-i-~s~sK~~~~G~~iG~v~~~~~--~~~~-------~~~~--~~~~~~~t~~~~---~~~~~a~~ 252 (368)
..+ |+ ..| + ...+|++..-+-++.+...+. +.+. +.+. ......-.|..+ .+-..-..
T Consensus 282 pE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlW 361 (511)
T KOG0628|consen 282 PEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLW 361 (511)
T ss_pred HHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHH
Confidence 211 11 011 1 124676653333333322211 1111 1110 000000111111 11111122
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
-.++.+.-+++ +.+.+..-.+.+.+.++..+-+ +.......-.++.|.+.. ....-+++.+++...
T Consensus 362 fv~R~~Gve~l-q~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~------------~N~~ne~Ll~~in~~ 428 (511)
T KOG0628|consen 362 FVLRSYGVENL-QNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKG------------DNEINEALLNRLNSS 428 (511)
T ss_pred HHHHHHhHHHH-HHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecC------------CcHHHHHHHHHHHhc
Confidence 23343433444 3445555566677777654433 333333333344554432 334457788888766
Q ss_pred -CeeecCCC---CCcccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 332 -GVYFAPSQ---FEAGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 332 -Gi~~~~~~---~~~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.|.+.+.. ...+++ +..++++|+++..+.|.+...+
T Consensus 429 g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 429 GRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred CcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 47777753 222232 3456889999999988877643
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0014 Score=55.78 Aligned_cols=329 Identities=15% Similarity=0.078 Sum_probs=180.5
Q ss_pred eccCCCcHHHHHHHHHHHHcC------CCC-CC-C-ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 5 IILFPSYLQVLAALGETMKKG------TSF-GA-P-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~------~~~-~~-~-~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
|.+|.-+...++.+.+.+++- .++ |- | ...-+-+...++.+.+ ..+.|-+.+|-|--+...+..+...+.
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTe 153 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTE 153 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcc
Confidence 677888888888888877761 111 11 1 0111233444555555 456777777555544444444433322
Q ss_pred -CceEEEEcCCCCCCchhh---hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 75 -RERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 75 -~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
+-+|+.-..+|.....+. +.+.|..+ ...+.....+ ..-.....+++-+.|..+.+..+.+++..++
T Consensus 154 kR~KILlE~kaFPSDhYAiesQ~~lhG~~~-------e~sm~~iePR--EGEetlRteDILd~IEkngDeiA~v~fSGvq 224 (465)
T KOG3846|consen 154 KRFKILLEKKAFPSDHYAIESQCKLHGISP-------ENSMIQIEPR--EGEETLRTEDILDTIEKNGDEIALVCFSGVQ 224 (465)
T ss_pred hhhhhhhccCCCCchHHHHHhhhhhcCCCh-------HHheEEeccc--ccccchhHHHHHHHHHhcCCeEEEEEeecce
Confidence 445666566665543332 22333321 1111100000 0000113677777777777889999999998
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhh--hhhhccCCc-cceeeeehHHHH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGL-PVGAYGGRRDIM 226 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s--~sK~~~~G~-~iG~v~~~~~~~ 226 (368)
--+|...+ +.+|-..-+..|.++=.|-+|+ .|. ..-...|++ |+.+ .=|.+++|. .||..++.++-.
T Consensus 225 yYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA---vgNVpL~LHdWgV--DFACWCSYKYlnaGaGgIgGlFvHekh~ 295 (465)
T KOG3846|consen 225 YYTGQYFD----IGAITFAGQFKGCLVGFDLAHA---VGNVPLQLHDWGV--DFACWCSYKYLNAGAGGIGGLFVHEKHT 295 (465)
T ss_pred eecccccc----hhhhhhcccCCCcEechhhhhh---hcCCceEEeecCC--ceEEEeeecccccCCCccceeeeehhhh
Confidence 88898888 8888876677799999999996 332 122334555 5433 337777442 566655543221
Q ss_pred -H---HhcC-C-----CCcc-----------ccccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh
Q 017633 227 -E---MVAP-A-----GPMY-----------QAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 284 (368)
Q Consensus 227 -~---~~~~-~-----~~~~-----------~~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 284 (368)
+ ++.. . .++. .+... .++.+...+.+..++....-. .+.++++.-.+...|+.+...
T Consensus 296 ~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTgYleyL~k~ 374 (465)
T KOG3846|consen 296 KESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTGYLEYLLKA 374 (465)
T ss_pred cchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHhHHHHHHHH
Confidence 1 1110 0 0011 11111 234455566667777664322 455555555555555444322
Q ss_pred c-CC---------------ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc---
Q 017633 285 A-GH---------------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--- 345 (368)
Q Consensus 285 ~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--- 345 (368)
. +. +......|..+.+.+..+ ...++..|.++|+.+-....+.+|.
T Consensus 375 ~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp---------------~~~vfqeL~krGv~~DkR~PNvIRvAPv 439 (465)
T KOG3846|consen 375 SKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP---------------TPKVFQELHKRGVIGDKRRPNVIRVAPV 439 (465)
T ss_pred hcccCchhhhcceeEEEeCCcccccccceEEEEeCCC---------------chHHHHHHHHcCeeccccCCCceEeecc
Confidence 1 11 112222333334443321 1577899999999998776666653
Q ss_pred ccCCCHHHHHHHHHHHHHHHhh
Q 017633 346 SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 346 ~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.+-.|+-.+++.|.+++..
T Consensus 440 pLYN~f~Dvy~f~n~L~e~~d~ 461 (465)
T KOG3846|consen 440 PLYNTFSDVYIFVNALNEAMDK 461 (465)
T ss_pred hhhccHHHHHHHHHHHHHHHHH
Confidence 7889999999999999988754
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0018 Score=64.51 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=140.5
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcC-CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCC
Q 017633 36 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 113 (368)
Q Consensus 36 ~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (368)
.++...++++.+ +-...-+-.+||.+-+.+++.. ...+ +.+.++++.+-|..+...+..... ..
T Consensus 127 ~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~-~~~~~k~~~~~v~~~~hP~~~~v~~t~~~---------~~---- 192 (954)
T PRK12566 127 LNFQQMTIDLTGLDLANASLLDEATAAAEAMALAK-RVAKSKSNRFFVDEHCHPQTLSVLRTRAE---------GF---- 192 (954)
T ss_pred HHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHH-HHhhcCCCEEEECCCCCHHHHHHHHHhhh---------cC----
Confidence 355566667665 4334344446666666444433 3332 234455566666554333332111 11
Q ss_pred CCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCcc
Q 017633 114 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 193 (368)
Q Consensus 114 ~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~ 193 (368)
+.+++ .+++++.+. +++.++++. +++..|.+.+ +++|.+++|++|.++|+- +. .+..+-.-.
T Consensus 193 --g~~i~------~~~~~~~~~---~~~~~v~vq-~P~~~G~i~d----~~~i~~~~h~~gal~~~~-~d-~laL~ll~~ 254 (954)
T PRK12566 193 --GFELV------VDAVDNLAA---HAVFGALLQ-YPDTHGEIRD----LRPLIDQLHGQQALACVA-AD-LLSLLVLTP 254 (954)
T ss_pred --CcEEE------EcchhhcCC---CCEEEEEEE-CCCCceEEcc----HHHHHHHHHHcCCEEEEE-eC-HHHHhCCCC
Confidence 11111 233444443 357776663 3344677766 999999999999986632 21 001111111
Q ss_pred ccccCCCcchh-----hhhhhcc-CCccceeeeehHHHHHHhcCC--CC-----------------------ccccccCC
Q 017633 194 QEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA--GP-----------------------MYQAGTLS 242 (368)
Q Consensus 194 ~~~~~~~~di~-----s~sK~~~-~G~~iG~v~~~~~~~~~~~~~--~~-----------------------~~~~~t~~ 242 (368)
...+|. ||+ +|+=.++ ||--.|++.+++++.+.+..+ +. -.-.++.+
T Consensus 255 Pge~GA--DI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNIC 332 (954)
T PRK12566 255 PGELGA--DVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNIC 332 (954)
T ss_pred hhhcCC--cEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhh
Confidence 223333 553 3555556 677799999999888877521 00 00112233
Q ss_pred CCHHHHHHHHHHH-HHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 243 GNPLAMTAGIHTL-KRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 243 ~~~~~~~a~~~~l-~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.++..++.+.+.+ ..+..+++ .+++..+..++.+.|.+. ++... ...+|-.+.+.. .
T Consensus 333 T~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~----g~~~~--~~~fF~~~~v~~-------------~ 393 (954)
T PRK12566 333 TAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK----GIKRL--NRHFFDTLTLEV-------------G 393 (954)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc----CCccc--cCCccceEEEEc-------------c
Confidence 3433333333333 22233444 344556666777777663 22111 112222333221 1
Q ss_pred HHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~ 362 (368)
....++.+...++||-++......+. +--.++++|++.++..+.
T Consensus 394 ~~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 394 GAQAAIIESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred CCHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 02467788888899888876544443 344668899998888773
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.009 Score=46.73 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHhhCC-----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 32 CLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
.++.+++++++.+.++ ++++|++|+|++++++.++.++. .++|.|++..+.|++
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~--dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA--DPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc--CCCCEEEEeCCCCCC
Confidence 3555566666655533 46899999999999999987763 478899999988864
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.26 Score=41.42 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=36.9
Q ss_pred CHHHHHHHHHcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh
Q 017633 126 DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 183 (368)
Q Consensus 126 d~~~le~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~ 183 (368)
|++.+++.+.+- ++-.-.+..... -...-.++-+++|+.+|..|+++-|+..+|
T Consensus 142 dleav~~~iee~g~dcilci~stts----cfapr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTTS----CFAPRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeeccc----ccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence 789999999873 222333322221 112233444999999999999999999999
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.87 Score=43.47 Aligned_cols=269 Identities=11% Similarity=0.160 Sum_probs=129.5
Q ss_pred HHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCccc
Q 017633 42 VISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 120 (368)
Q Consensus 42 l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (368)
++++.+ +....-+..-||.|-+....+.+. .++.+ ++.+...|..+...+.....++ +.+
T Consensus 172 i~dlTGL~~aNASLLDEgTAaaEAm~l~~~~-~krkk-~vvd~~~hpqtlsV~~TRa~~~---------------~i~-- 232 (1001)
T KOG2040|consen 172 ITDLTGLPMANASLLDEGTAAAEAMALCNRI-NKRKK-FVVDSNCHPQTLSVVKTRAKGF---------------GIK-- 232 (1001)
T ss_pred hhhccCCcccchhhhccchhHHHHHHHHHhh-cccce-EEecCCCCcchhhhhhcccccc---------------cee--
Confidence 334444 344444555688777766655543 34445 6667777776544333322211 111
Q ss_pred ccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCC
Q 017633 121 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVT 200 (368)
Q Consensus 121 ~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~ 200 (368)
+...|+.+..... +....+++ ..+.+.|.+.+ ..++++.+++.|.++++---...+ .-.-....+|.+
T Consensus 233 -v~~~~~~~~~~s~----~~v~gvlv-QYP~t~G~i~d----~~el~~~a~~~~s~vv~atDLLaL--tiLrpPgefGaD 300 (1001)
T KOG2040|consen 233 -VVVSDIKEADYSS----KDVSGVLV-QYPDTEGSVLD----FDELVELAHANGSLVVMATDLLAL--TILRPPGEFGAD 300 (1001)
T ss_pred -EEecCHHHhhccc----cceeEEEE-EcCCCCCcccC----HHHHHHHhhccCceEEEeehhhHH--HccCChhhcCce
Confidence 1111333332222 24556655 34445688888 999999999999887753111111 011112233433
Q ss_pred cchhh---hhhhcc-CCccceeeeehHHHHHHhcCC--CCc---------------------cccccCCCCHHHHHHHHH
Q 017633 201 PDLTT---LGKIIG-GGLPVGAYGGRRDIMEMVAPA--GPM---------------------YQAGTLSGNPLAMTAGIH 253 (368)
Q Consensus 201 ~di~s---~sK~~~-~G~~iG~v~~~~~~~~~~~~~--~~~---------------------~~~~t~~~~~~~~~a~~~ 253 (368)
..+.| |+=.+| ||.-.|++.+++++.+.+..+ +.. ..-.| .|.-.+.|.++
T Consensus 301 IavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKAT--SNICTAQALLA 378 (1001)
T KOG2040|consen 301 IAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKAT--SNICTAQALLA 378 (1001)
T ss_pred eeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccc--hhhhHHHHHHH
Confidence 22222 455555 566666767777666555421 000 00011 12222222222
Q ss_pred HHH----HHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 254 TLK----RLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 254 ~l~----~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
-+. ...-.+ ..+++......+...|+++..+. ..-.+|=.+.+.- ....+++.
T Consensus 379 NmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel------~~k~fFDTLkI~~-------------~~s~~~~l 439 (1001)
T KOG2040|consen 379 NMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHEL------QHKPFFDTLKIRC-------------GCSAEEVL 439 (1001)
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhh------ccccccceEEEEe-------------cCcHHHHH
Confidence 222 111122 23344444455555555443221 1111222232221 11357788
Q ss_pred HHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHH
Q 017633 326 RGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 362 (368)
Q Consensus 326 ~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~ 362 (368)
++..+++|-++...+..+.+ --..+++|++.++..+.
T Consensus 440 ~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 440 DRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred HHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence 88888888777665554443 34567888888877664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 368 | ||||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 1e-146 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 1e-146 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 1e-146 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 1e-145 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-145 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-143 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 1e-106 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-95 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 4e-94 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 9e-94 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 5e-85 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-70 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 8e-37 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 3e-36 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 3e-31 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-23 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 1e-23 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 1e-23 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 4e-23 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 3e-22 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-17 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 4e-17 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 8e-17 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 1e-16 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 9e-16 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 1e-15 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-15 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 4e-15 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 1e-14 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 2e-14 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 5e-13 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 4e-12 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 5e-12 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 5e-12 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 6e-12 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 9e-12 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-11 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 1e-11 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-11 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 2e-11 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 2e-11 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 2e-11 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 3e-11 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 3e-11 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 3e-11 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 3e-11 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 3e-11 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 3e-11 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 7e-11 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 8e-11 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 8e-11 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 1e-10 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 6e-10 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 1e-09 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 5e-09 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 7e-09 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 8e-09 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 2e-08 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 2e-08 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 4e-08 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 1e-07 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 4e-07 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 2e-06 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-06 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 3e-06 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 4e-06 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 4e-05 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 2e-04 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 3e-04 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 3e-04 |
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 256/356 (71%), Positives = 301/356 (84%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+
Sbjct: 72 EVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAY 131
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++
Sbjct: 132 TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKA 191
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+AYGG
Sbjct: 192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGG 251
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 252 VQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+ED
Sbjct: 312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYED 371
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 372 AKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 165/356 (46%), Positives = 238/356 (66%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+ A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA M +R+ARA+
Sbjct: 75 HITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY 134
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PFN+V L+
Sbjct: 135 TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKE 194
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+ E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T FR YGG
Sbjct: 195 ALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGG 254
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQ+ GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++GNP +M +GI
Sbjct: 255 AQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGI 314
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
L+ L++ G YE L+++ L +GI++ K I + G +FT + +++
Sbjct: 315 ACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDA 374
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
A+ ++ F +F++ ML+EGV APS++EA F + H+ +DI++TI A + +
Sbjct: 375 AQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVGRAFAAL 430
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 664 bits (1716), Expect = 0.0
Identities = 189/357 (52%), Positives = 246/357 (68%), Gaps = 1/357 (0%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+ A+ E +++G SFGAP +E +A++V VP+++MVR VNSGTEA M +RLAR +
Sbjct: 73 AIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY 132
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +ND++++
Sbjct: 133 TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQ 192
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
FE E+A II+EPV GN I P P+FL +R + E GALLI DEVMTGFR+A G
Sbjct: 193 AFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAG 252
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQ+Y+ V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGTLSGNP+AM AG
Sbjct: 253 AQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGF 312
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFE 311
L + + G YE L ++T L G+ A K+ + ++ GMFG FFT V ++
Sbjct: 313 ACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQ 372
Query: 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
D + +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+ AA + ++
Sbjct: 373 DVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL 429
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 661 bits (1709), Expect = 0.0
Identities = 198/356 (55%), Positives = 249/356 (69%), Gaps = 1/356 (0%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M LRLAR +
Sbjct: 73 RVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY 132
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++
Sbjct: 133 TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKY 192
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTGFR+AY
Sbjct: 193 AFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNC 252
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
Q Y+GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLSGNPLAM AG
Sbjct: 253 GQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TL +L P +Y + L G+ A +K G M G FFT+ PV N++
Sbjct: 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDA 371
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE + ++
Sbjct: 372 AKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 660 bits (1706), Expect = 0.0
Identities = 148/356 (41%), Positives = 210/356 (58%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA M +RLAR +
Sbjct: 76 RVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL P+NDV ALE
Sbjct: 136 TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALER 195
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+TGFRL G
Sbjct: 196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEG 255
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
AQ YF + D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT + +P+ M AG+
Sbjct: 256 AQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGL 315
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TLK L+E Y + L + + + G + M F V N
Sbjct: 316 ATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQ 375
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
A+K++ + + + ML GV+ APS EA FT L H + ++ + L+ +
Sbjct: 376 ARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV 431
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 647 bits (1672), Expect = 0.0
Identities = 190/354 (53%), Positives = 239/354 (67%), Gaps = 2/354 (0%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M LRLAR +
Sbjct: 72 KVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGY 131
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +ND L
Sbjct: 132 TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLRE 191
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+ + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMTGFRLA+GG
Sbjct: 192 VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGG 250
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
A E G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+
Sbjct: 251 ATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGL 310
Query: 253 HTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311
TL+ L+E PG Y YL + L G+ + K+ G + M FFTEGPV F+
Sbjct: 311 ATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQ 370
Query: 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 365
DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K L
Sbjct: 371 DARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 610 bits (1574), Expect = 0.0
Identities = 111/364 (30%), Positives = 167/364 (45%), Gaps = 13/364 (3%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V AA+ E + G + A LE AE +++A PSI +RF SGTE + LR+ARAF
Sbjct: 77 RVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAF 136
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR I++FEG YHG D +G G P +PGV T TL +D+ +
Sbjct: 137 TGRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRPDDIEGMRE 193
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+F N+ +IAA I EPV + G FL + ++ GAL I DEV++GFR+ G
Sbjct: 194 VFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG 253
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTA 250
Q V PDLT L K GGLP G GGR D+M +++ + GT +GNP+ A
Sbjct: 254 MQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAA 313
Query: 251 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF------FTE 304
I + + E +N + + + + G F T+
Sbjct: 314 AIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTD 373
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
+ + + A ++ EGV + F S H + ++H +T ++V
Sbjct: 374 TGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTFDRV 431
Query: 365 LRQI 368
L ++
Sbjct: 432 LDRL 435
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 589 bits (1522), Expect = 0.0
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 19/358 (5%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+ AA+ + G + E + AE V PSI++VRF NSGTEA + L A A
Sbjct: 120 VIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAI 179
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR+ ++ F+G YHG L+ SG P A Y + +NDV +
Sbjct: 180 TGRKTVLAFDGGYHGG----LLNFASG----------HAPTNAPYHVVLGVYNDVEGTAD 225
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
L + + + AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+ GG
Sbjct: 226 LLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGG 284
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTA 250
AQE G++ DLTTLGK IGGG+ GA+GGRRD+ME PA G AGT + N L M+A
Sbjct: 285 AQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSA 344
Query: 251 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310
G L ++ L+ + + + + + F+ P+ +
Sbjct: 345 GHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSA 404
Query: 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
D + ++ F+ ML +G+Y AP A +A + A + +
Sbjct: 405 GDVRAADQQLKELFFFHMLRKGIYLAPRGMYALSLEIADA--GRDAFAEALADFIGEQ 460
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 4e-53
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 41/251 (16%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG--------- 87
LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 90 LATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASAT 149
Query: 88 ------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--- 138
P G + P + + ++ L+ F+
Sbjct: 150 YSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLIDRQS 200
Query: 139 -GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG----- 192
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GRTGTM 255
Query: 193 -AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 251
A + GVTPD+ TL K +G GLP+ A I E T +PL G
Sbjct: 256 FACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLPAAVG 314
Query: 252 IHTLKRLKEPG 262
+ L ++ G
Sbjct: 315 LRVLDVVQRDG 325
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-52
Identities = 74/248 (29%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 38 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH------- 88
+AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 112 VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMAL 171
Query: 89 -ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--E 140
A K+ V + G T E + E G
Sbjct: 172 TAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIETQIGAQS 225
Query: 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG------AQ 194
+AAII+EP+ G GFI P P FL + ENG + I DEV TGF A
Sbjct: 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----ARTGAWFAS 280
Query: 195 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 254
E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+ A +
Sbjct: 281 EHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVTCAAAVAA 337
Query: 255 LKRLKEPG 262
L ++E
Sbjct: 338 LGVMRELD 345
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 2e-52
Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 40/248 (16%)
Query: 38 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-------- 87
L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 89 LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLAL 148
Query: 88 --HADPFLVKAGSGVATLGLPDSPGV---PKGATYETLTAPFNDVSALENLFENNKG--E 140
+P+ AG G V ++ + ++++ +F+N+ +
Sbjct: 149 TGKVNPY--SAGMG------LMPGHVYRALYPCPLHGIS-EDDAIASIHRIFKNDAAPED 199
Query: 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG------AQ 194
IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G G A
Sbjct: 200 IAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA-----GRTGTLFAM 254
Query: 195 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 254
E GV PDLTT K I GG P+ GR ++M+ VAP G GT +GNP+A A +
Sbjct: 255 EQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEV 311
Query: 255 LKRLKEPG 262
LK ++
Sbjct: 312 LKVFEQEN 319
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 4e-52
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 34/249 (13%)
Query: 38 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-------- 87
+ E + P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 109 VCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMAL 168
Query: 88 --HADPFLVKAG---SGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKG-- 139
P+ G + L G T + + G
Sbjct: 169 TAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVIDKQIGAD 226
Query: 140 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG------A 193
+AA+++EP+ G GFI P FL + ++N + I DEV TGF A
Sbjct: 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----ARTGAMFA 281
Query: 194 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 253
E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+A A +
Sbjct: 282 CEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPIACAAALA 338
Query: 254 TLKRLKEPG 262
T++ ++ G
Sbjct: 339 TIETIESEG 347
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 6e-50
Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 45/250 (18%)
Query: 38 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 91 LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG-------- 142
Query: 96 AGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFENNK----- 138
V ++ + G+ P Y A+ L
Sbjct: 143 --CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTEKLAAVPA 199
Query: 139 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG------ 192
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 200 GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL-----ARSGRLH 254
Query: 193 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP++ AG+
Sbjct: 255 CFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNPISAAAGL 310
Query: 253 HTLKRLKEPG 262
L+ +
Sbjct: 311 AVLETIDRDD 320
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-45
Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 29/256 (11%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 96
+ + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 92 FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT------- 144
Query: 97 GSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149
+ +L + P + + P+NDV AL+ + AA+ILEPV
Sbjct: 145 ---MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TAAVILEPV 194
Query: 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 208
G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD+ TL K
Sbjct: 195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAK 254
Query: 209 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268
+GGG+P+G R ++ + G T GNPLAM AG+ ++ L+ +E
Sbjct: 255 ALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWERAA 311
Query: 269 KITGELTQGIIDAGKK 284
++ + +
Sbjct: 312 ELGPWFMEKLRAIPSP 327
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 7e-44
Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 38 LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH------- 88
LA+ +++ P + F NSGTEA +++ + TGR+ II F G +HG
Sbjct: 91 LAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISL 149
Query: 89 -ADPFLVKAG-----SGVATLGLPDSPGVPKGATY-----ETLTAPFNDVSALENLFENN 137
A + ++ GV + P+ P E + + +
Sbjct: 150 TASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVP 209
Query: 138 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG----- 192
E+A I EP+ G G++ P +F ++++ K+ G LL+ DEV G G
Sbjct: 210 PEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGL-----GRTGKL 264
Query: 193 -AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 250
A E F PD+ TL K +GGG +P+GA R+D+ P + T GN LA
Sbjct: 265 FAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDF-----KPGMHSNTFGGNALACAI 319
Query: 251 GIHTLKRLKE 260
G + +K+
Sbjct: 320 GSKVIDIVKD 329
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 4e-41
Identities = 67/258 (25%), Positives = 104/258 (40%), Gaps = 49/258 (18%)
Query: 50 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVA 101
EMV +N+G EA ++ AR + R II E +HG +
Sbjct: 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRT----------MG 143
Query: 102 TLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156
+ + + +G + + P+ D+ AL+ N AA ILEP+ G +G
Sbjct: 144 AVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN---TAAFILEPIQGEAGIN 198
Query: 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQEYFGVTPDLTTLGKIIG 211
P FL + K+ L + DE+ TG A ++ VTPD+ LGK +G
Sbjct: 199 IPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC----DWDNVTPDMYILGKALG 254
Query: 212 GGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPGTYEY 266
GG+ P+ RDI+ + P G T GNPLA I L+ L+E E
Sbjct: 255 GGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLACAVSIAALEVLEEEKLTER 307
Query: 267 LNKITGELTQGIIDAGKK 284
++ +L + +
Sbjct: 308 SLQLGEKLVGQLKEIDNP 325
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 3e-40
Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 38/240 (15%)
Query: 54 FVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107
F+NSGTEA +LAR + + +II F +HG + + T+ +
Sbjct: 119 FMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRS----------LFTVSVGG 168
Query: 108 SPGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162
P G + PFND+ A++ + +++ A+++EP+ G G A P+F
Sbjct: 169 QPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH---TCAVVVEPIQGEGGVQAATPEF 223
Query: 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221
L +R + E+ ALL+FDEV G R A ++GVTPD+ T K +GGG PV A
Sbjct: 224 LKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSA--- 280
Query: 222 RRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 277
M + G T GNPLA + P + ++ + Q
Sbjct: 281 ----MLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQH 336
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 4e-40
Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 36/246 (14%)
Query: 54 FVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108
F NSGTE+ G ++ AR + + I F+ +HG + L L +
Sbjct: 98 FTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRT----------LGALSLTAN 147
Query: 109 PGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
K ++ L A +ND+S++E L AIILE V G G DF
Sbjct: 148 EKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK---TCAIILESVQGEGGINPANKDFY 202
Query: 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222
A+R++ E LLI DE+ G R A E+ + PD+ T K +G GL VGA+
Sbjct: 203 KALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVIN 262
Query: 223 RDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
+ + A +AG T GNPL + KE E +NK+T L Q +
Sbjct: 263 QKV------ASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL 316
Query: 279 IDAGKK 284
+ +
Sbjct: 317 DELINE 322
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-40
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPF 92
LA ++ + V F NSGTE+ ++LAR + + + I FE +HG
Sbjct: 75 LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRT--- 131
Query: 93 LVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILE 147
+L P KG +E L A ND+ ++ L + A II+E
Sbjct: 132 -------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE---TAGIIIE 179
Query: 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 206
+ G G DFL+ ++ I KE LLI DEV TG R A ++F + PD+ L
Sbjct: 180 VIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIAL 239
Query: 207 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKE 260
K +GGG+P+GA + + G T GNPLA AG + +++
Sbjct: 240 AKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEK 290
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 6e-40
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 48/236 (20%)
Query: 50 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVA 101
+ V +N+G EA +L R + +I+ + + G +
Sbjct: 123 DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRT----------LG 172
Query: 102 TLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156
+ + + P++D+ ALE ++ + A I+EP+ G +G I
Sbjct: 173 CISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP--NVCAFIVEPIQGEAGVI 228
Query: 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQEYFGVTPDLTTLGKIIG 211
P ++L + I K+ L + DEV TG L ++ V PD+ LGK +
Sbjct: 229 VPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV----HHYNVKPDVILLGKALS 284
Query: 212 GG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPG 262
GG P+ A DIM ++ P G T GNPLA + + L L
Sbjct: 285 GGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAASICVEALNVLINEK 333
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-40
Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 48/236 (20%)
Query: 50 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVA 101
V +N+G EA +LAR + + +I+ G + G ++
Sbjct: 134 HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRT----------LS 183
Query: 102 TLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156
+ P G + P+ND+ ALE ++ +AA ++EP+ G +G +
Sbjct: 184 AISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDPN--VAAFMVEPIQGEAGVV 239
Query: 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQEYFGVTPDLTTLGKIIG 211
P P +L +R + + L I DE+ TG LA +Y V PD+ LGK +
Sbjct: 240 VPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV----DYENVRPDIVLLGKALS 295
Query: 212 GGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPG 262
GGL PV A DIM + P G T GNPL I L+ L+E
Sbjct: 296 GGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLGCRVAIAALEVLEEEN 344
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-40
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 38/249 (15%)
Query: 54 FVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 108
F N+GTEA +++AR + + RI+ +HG + +L
Sbjct: 102 FANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRT----------LGSLTATGQ 151
Query: 109 PGVPKGATYETLT-----APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
P K +E L FN+V L + + A+ LEP+ G SG + +FL
Sbjct: 152 PKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED---VCAVFLEPIQGESGIVPATKEFL 206
Query: 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222
R++ E ALL+FDEV G R A + +GV PD+ T K +GGG+P+GA
Sbjct: 207 EEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAV--- 263
Query: 223 RDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
+V + + G T GNPLA AG+ +K L + G E + + L + +
Sbjct: 264 -----IVNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318
Query: 279 IDAGKKAGH 287
+ ++
Sbjct: 319 QEMKEEYDV 327
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 5e-38
Identities = 55/237 (23%), Positives = 80/237 (33%), Gaps = 36/237 (15%)
Query: 54 FVNSGTEACMGVLRLARAFTGRE------------RIIKFEGCYHG---------HADPF 92
FV G A L+ A + R +++ G +HG + P
Sbjct: 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPT 183
Query: 93 LVKAGSGVATLGLPDSPGVPKGATYETLT-APFNDVSALENLFENNKGEIAAIILEPVVG 151
+ A D+P + G + + FE +IA + EP+ G
Sbjct: 184 I-TARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQG 242
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF----RL-AYGGAQEYFGVTPDLTTL 206
G +P+F A+R + E ALLIFDEV TG AY + V PD+
Sbjct: 243 EGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAY----QQLDVAPDIVAF 298
Query: 207 GK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262
GK G+ G A P T GN M L+ ++ G
Sbjct: 299 GKKTQVCGVMAGRRVDEVADN---VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 50/306 (16%), Positives = 89/306 (29%), Gaps = 71/306 (23%)
Query: 14 VLAALGETMKKGTSFGAPCL-------LENVLAEMVISAVPS-IEMVRFVNSGTEACMGV 65
++ + + T P L L E ++S P + + + G+ +
Sbjct: 84 LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 143
Query: 66 LRLARAFTGRER--------------------------IIKFEGCYHG---------HAD 90
+ + + I+ F G +HG H+
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 203
Query: 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL------FENNKGEIAAI 144
K + P + + LE + + K +A I
Sbjct: 204 AI-HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGI 262
Query: 145 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG------AQEYFG 198
I+EP+ G DF +R I++++G + DEV TG G A E++G
Sbjct: 263 IVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWG 317
Query: 199 VT--PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 256
+ D+ T K + G E P P T G+P +
Sbjct: 318 LDDPADVMTFSKKMMTGGFFHK--------EEFRPNAPYRIFNTWLGDPSKNLLLAEVIN 369
Query: 257 RLKEPG 262
+K
Sbjct: 370 IIKRED 375
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 67/282 (23%), Positives = 112/282 (39%), Gaps = 36/282 (12%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG---- 87
LAE + + ++ F NSG+EA ++AR + R + + YHG
Sbjct: 96 LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMA 155
Query: 88 ----------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 135
+PF SG + PD +P V ++ +
Sbjct: 156 TMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIERENIYDVEC--VKEVDRVMT 209
Query: 136 NNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 193
E IAA I+EP++ G + D++ A+ +++GALLI DEV+ GF R
Sbjct: 210 WELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFG 269
Query: 194 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP--MYQAG-TLSGNPLAMT 249
+ V PD+ T+ K I LP+ A +R+I E G ++ T GNP A
Sbjct: 270 FMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291
+ L+ ++ E ++ L + + + H + G
Sbjct: 330 LALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 40/253 (15%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
A + V V+ G+EA ++LAR + GR ++I YHG
Sbjct: 77 YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHG--- 133
Query: 91 PFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPFNDVSALENLFE 135
+ + +L P++ A D L L E
Sbjct: 134 -------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA--EDAEGLRALLE 184
Query: 136 NNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYG 191
E +AA + EPVVG S +AP P + +R I E G + I DEVM+G R +
Sbjct: 185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL 244
Query: 192 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMT 249
+ GVTPD+ LGK + G P+ + E V + G T +G+P+++
Sbjct: 245 ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA 304
Query: 250 AGIHTLKRLKEPG 262
AG+ L ++
Sbjct: 305 AGLSVLDIVERED 317
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 79/376 (21%), Positives = 129/376 (34%), Gaps = 69/376 (18%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG--- 87
LAE +I P + V + +SG EA L++A + +++ I + YHG
Sbjct: 92 LAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTI 151
Query: 88 -----------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 134
H P + +P G E + L L
Sbjct: 152 GAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECRDQ---CLRELAQLL 204
Query: 135 ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192
E + EIAA+ +E +V G SG I +L +R + L+I DEV TGF R G
Sbjct: 205 EEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT---G 261
Query: 193 ---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTL------S 242
A E+ V PDL GK I GG LP+ DI + A T +
Sbjct: 262 KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDDYENLKTFFHGHSYT 319
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFF 301
GN L + L + E + + + +L + D G G
Sbjct: 320 GNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL---HALPHVGDIRQLGFMCGA 376
Query: 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---------YFAPSQFEAGFTSLAHSSD 352
++ ++ + M E G+ F P LA +++
Sbjct: 377 ELVRSK-ETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP--------PLASTAE 427
Query: 353 DIQHTITAAEKVLRQI 368
++ + ++ + ++
Sbjct: 428 ELSEMVAIMKQAIHEV 443
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 32/254 (12%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG--- 87
L+ ++ P + V + NSG+E+ ++R+ R + ++ +I YHG
Sbjct: 99 LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTI 158
Query: 88 -----------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 134
H D + G+A + P K T + LE
Sbjct: 159 GGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKDMTPDEFGVVA--ARWLEEKI 212
Query: 135 ENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192
+ +AA + EP+ G G I P + I RI ++ LL+ DEV+ GF R
Sbjct: 213 LEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF 272
Query: 193 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 251
++FG PDL T K + G LP+GA + + E + G T SG+P+
Sbjct: 273 GHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVA 332
Query: 252 IHTLKRLKEPGTYE 265
+ L++ G +
Sbjct: 333 HANVAALRDEGIVQ 346
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 66/412 (16%), Positives = 123/412 (29%), Gaps = 93/412 (22%)
Query: 38 LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF---------------TGRERIIK 80
AE+++ V R F ++G+ A L++A ++I
Sbjct: 429 CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIA 488
Query: 81 FEGCYHG----------------------------HADPFLVKAGSGVATLGLPD--SPG 110
G YHG DP V +G + LP+ S
Sbjct: 489 LRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEI 548
Query: 111 VPKGATYETLTAPFND-----------VSALENLFE-----NNKGEIAAIILEPVV-GNS 153
P+ T+ + F+ + L + + A+I+EPV+ G
Sbjct: 549 APEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAG 608
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 212
G P F + + +IFDEV TGF RL E G PD+ K++ G
Sbjct: 609 GMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTG 668
Query: 213 G-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268
G +P+ + + + + + S + + ++ K+P T +
Sbjct: 669 GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNIT 728
Query: 269 KITGELTQGIIDAGKK--AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325
L + + + + H+ + G + +
Sbjct: 729 SQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA----SNSGYASLYAKSLL 784
Query: 326 RGMLEEGV---------YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+ E+G+ Y S + + +T K L +
Sbjct: 785 IMLREDGIFTRPLGNVIYLMC--------GPCTSPEICRRLLTKLYKRLGEF 828
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 28/267 (10%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
L+E ++ P V + NSG+EA ++++ + +I+ YHG
Sbjct: 110 LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG--V 167
Query: 91 PFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSALENLFENNK 138
+ + +G GLP P + F LE +
Sbjct: 168 TAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG 227
Query: 139 GE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
+ IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 228 ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVT 287
Query: 197 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSGNPLAMTAG 251
+ TPD K + G P+GA ++ + + T SG+P+
Sbjct: 288 YDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIA 347
Query: 252 IHTLKRLKEPGTYEYLNKITGELTQGI 278
+ + + G E + ++ + +
Sbjct: 348 LKAIDVVMNEGLAENVRRLAPRFEERL 374
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 28/227 (12%)
Query: 69 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-- 124
R G+ R++ + G YHG D F ++ P + + AP
Sbjct: 161 GRGLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVP 212
Query: 125 -----NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 178
+A E + GE+AA+++EPVV G G P +L+ +R I + LLI
Sbjct: 213 RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLI 272
Query: 179 FDEVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAP 231
FDE+ TGF R G A ++ GV+PD+ +GK + GG L + A D+
Sbjct: 273 FDEIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
AG + T NPLA + +++ L + ++ LT G+
Sbjct: 330 AGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 47/289 (16%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LA+M+I P + V F SG++A ++L + +++II YHG
Sbjct: 100 LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHG--- 156
Query: 91 PFLVKAGSGVATLGL-----------PDSPGVPK-GATYETLTAPFND---------VSA 129
SGV T L V A Y +
Sbjct: 157 -------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADK 209
Query: 130 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
LE + E IAA I EP++G G + P + I+ + K+ LL+ DEV+TGF R
Sbjct: 210 LEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269
Query: 188 LAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLS 242
L +++G+ PDL T+ K + P+ + +++ G + T S
Sbjct: 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYS 329
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291
+P+ + AG+ L+ + E + + A GH G
Sbjct: 330 AHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA--VGGHKNVG 376
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 47/278 (16%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LAE + P ++ V F +SG+E + +++ RA+ + ++I YHG
Sbjct: 98 LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHG--- 154
Query: 91 PFLVKAGSGVATL---GLP----------------DSPGVPKGATYETLTAPFNDVSA-- 129
+A G+ + A + A
Sbjct: 155 -------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 130 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
L L E + IAA+ +EP+ G++G + P +L R I ++ LL+FDEV+TGF R
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 188 LAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL----- 241
+ FGVTPDL + K + G +P+GA +I + A
Sbjct: 268 TGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYT 327
Query: 242 -SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
S +P+A AG+ L L++ + + ++ + +
Sbjct: 328 YSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 34/279 (12%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG--- 87
LA+ + P + V F G+EA +R+ R + + II + YHG
Sbjct: 104 LAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTV 163
Query: 88 -----------HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 135
HA + V + P+ E LE
Sbjct: 164 ASSALGGMAGMHAQSGLI----PDVHHINQPNWWAEGGDMDPEEFGLAR--ARELEEAIL 217
Query: 136 NNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 193
+AA I EPV G G I + I+RI + LLI DEV+ GF R
Sbjct: 218 ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFG 277
Query: 194 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
+ G+ P + T+ K + G P+G ++ ++ T SG+P+A +
Sbjct: 278 TQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVAL 336
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291
L+ L+E +++ + + +A H + G
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEA--LTDHPLVG 373
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 20/220 (9%)
Query: 74 GRERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFND 126
R+R + F YHG D F + LP++ P + D
Sbjct: 133 ARQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190
Query: 127 VSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
+ L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TG
Sbjct: 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG 250
Query: 186 F-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQA 238
F R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 251 FGRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHG 307
Query: 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
T GNPLA A +L L+ + + I +L + +
Sbjct: 308 PTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 48/264 (18%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHAD 90
LAE + + P + + F G+ A LR + + ++RII YHG
Sbjct: 102 LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHG--- 158
Query: 91 PFLVKAGSGVATLGL-----------PDSPGV----------PKGATYETLTAPFNDVSA 129
S T + + E V
Sbjct: 159 -------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDL--VQE 209
Query: 130 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 187
E+ E+ + IAA + EP++ + G I P + + I +++ L I DEV+TGF R
Sbjct: 210 FEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGR 269
Query: 188 L-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA---PAGPMYQAG-TL 241
+ +++ FGV PD+ T K + G +P+G ++ ++ G + G T
Sbjct: 270 CGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329
Query: 242 SGNPLAMTAGIHTLKRLKEPGTYE 265
S P+A A + ++ ++ G +
Sbjct: 330 SNQPVACAAALANIELMEREGIVD 353
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 58/269 (21%), Positives = 81/269 (30%), Gaps = 57/269 (21%)
Query: 125 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 182
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 183 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 233
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 287
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 343
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 344 ----FT-SLAHSSDDIQHTITAAEKVLRQ 367
FT S H I + A + + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 58/270 (21%)
Query: 125 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 182
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 183 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 233
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 234 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 287
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 343
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 344 ----FT-SLAHSSDDIQHTITAAEKVLRQI 368
+ H+ IQ + + R +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 53/270 (19%), Positives = 87/270 (32%), Gaps = 60/270 (22%)
Query: 125 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 182
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 183 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 234
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 235 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 287
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 344
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 345 T------SLAHSSDDIQHTITAAEKVLRQI 368
+ H+ D I I KV +Q
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 183
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 184 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 228
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 50/263 (19%)
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 183
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 184 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 237
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 238 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 294
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 345
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 346 SLAHSSDDIQHTITAAEKVLRQI 368
+ + + I I +
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 56/270 (20%)
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 179
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 180 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 232
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 287
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 343
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 344 ----FT-SLAHSSDDIQHTITAAEKVLRQI 368
S H+ + I A +V +++
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 46/334 (13%), Positives = 83/334 (24%), Gaps = 90/334 (26%)
Query: 3 QLIILFPSYLQ-----VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNS 57
+ LF + L V + E ++ F L+ + E PS+ ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTE---QRQPSMMTRMYIEQ 115
Query: 58 GTEACMGVLRLARAFTGRERIIKF--EGCYHGHADPFLV---KAGSG---VATLGLPDSP 109
A+ R + + ++ GSG VA
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 110 ---GVPKGATYETL---TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
+ + L +P + L+ L + S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQ 231
Query: 164 NAIRRITKENG---ALLIFDEV-----MTGFRL---------------AYGGAQEY---- 196
+RR+ K LL+ V F L A
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 197 ----FGVTPD--LTTLGKIIG---GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247
+TPD + L K + LP + L+ NP
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------------------EV--LTTNPRR 329
Query: 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281
+ + I R T++ + + II++
Sbjct: 330 L-SIIAESIR-DGLATWDNWKHVNCDKLTTIIES 361
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 34 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 93
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 94 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 150
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 151 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 201
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 202 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 248
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 249 TA 250
Sbjct: 312 MV 313
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.98 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.98 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.98 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.98 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.98 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.98 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.98 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.97 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.97 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.97 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.97 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.97 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.96 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.96 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.95 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.92 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.95 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.95 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.95 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.94 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.94 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.94 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.94 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.94 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.93 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.93 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.93 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.93 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.93 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.93 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.93 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.93 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.92 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.92 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.92 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.91 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.91 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.91 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.91 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.91 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.91 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.91 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.91 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.91 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.91 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.9 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.9 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.9 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.9 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.9 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.9 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.9 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.9 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.9 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.9 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.9 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.89 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.89 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.89 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.89 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.88 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.88 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.88 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.87 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.87 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.87 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.86 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.86 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.86 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.86 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.86 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.86 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.85 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.85 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.85 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.85 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.85 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.85 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.85 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.85 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.85 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.84 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.84 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.83 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.83 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.83 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.82 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.82 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.8 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.8 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.8 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.8 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.79 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.73 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.72 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.71 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.7 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.67 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.66 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.63 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.62 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.61 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.31 |
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-53 Score=385.46 Aligned_cols=347 Identities=34% Similarity=0.519 Sum_probs=306.5
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|+|++++.++++++..++.++....++++.+++.+++.+.++|++||++|++.|+++++.++++++||.+.+
T Consensus 98 ~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~ 177 (454)
T 4ao9_A 98 AGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSG 177 (454)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETT
T ss_pred hhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeC
Confidence 56899999999999999999887777788899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||.+.......+. . ....+...+|++|++.+++.+.++.+++++|++||+.+++|.+.++++|+
T Consensus 178 ~yHG~t~~~~~~~~~----------~----~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL 243 (454)
T 4ao9_A 178 GYHGGVLGFGARPSP----------T----TVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFL 243 (454)
T ss_dssp CBCSTTCBBSSSBCT----------T----SCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHH
T ss_pred CcCCccccccccccC----------c----cCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhH
Confidence 999987654332221 1 11234566788999999999998777899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC-CCCccccccCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLS 242 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~-~~~~~~~~t~~ 242 (368)
++|+++|++||++||+||+++| |.|..++.+++++.||+++++|++++|+++|.+.+++++++.+.. .+...+++||+
T Consensus 244 ~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~ 322 (454)
T 4ao9_A 244 QALRESATQVGALLVFDEVMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFN 322 (454)
T ss_dssp HHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTT
T ss_pred HHHHHHHhhcCCEEEEECCCcC-CCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCC
Confidence 9999999999999999999998 788888899999999999999999999999999999999998875 35677899999
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
+|++++++++++++.++++++.+++.++.++++++|+++..+.+.+..+.+.|.++++++....+.++......+.....
T Consensus 323 gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~ 402 (454)
T 4ao9_A 323 NNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQ 402 (454)
T ss_dssp TCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHH
Confidence 99999999999999998888999999999999999999998888888999999999999877666665555544555567
Q ss_pred HHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 323 RFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 323 ~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++..|+++||++.|.+ .++++..+|++||++++++|++++.+
T Consensus 403 ~~~~~ll~~Gv~~~p~~--~~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 403 LLFFHLLNEDIYSSPRG--FVVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp HHHHHHHHTTEECCTTC--EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEcCCC--CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 88899999999999876 34566778999999999999999875
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=377.72 Aligned_cols=364 Identities=46% Similarity=0.833 Sum_probs=305.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++||++|++++++.+++.+...++++++...+|++++++.+++.+++++++||++|++.++++++.++++++||++++
T Consensus 66 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~ 145 (434)
T 3l44_A 66 PIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAG 145 (434)
T ss_dssp TCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETT
T ss_pred ccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcC
Confidence 47899999999999999998866667888999999999999998789999999999999999999887778899999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+||+.+...+...+.+......+...+++.....+++.+|++|+++|+++++++++++++++++|+++++|.+.++++++
T Consensus 146 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 225 (434)
T 3l44_A 146 CYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFL 225 (434)
T ss_dssp CCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHH
T ss_pred ccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHH
Confidence 99999888887776654433334444443333446777888899999999987556899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||++||+||+|++|+.|..+..+.+++.||+.+|||++++|+|+|++++++++++.+...+...+++|+++
T Consensus 226 ~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~ 305 (434)
T 3l44_A 226 EKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAG 305 (434)
T ss_dssp HHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCc
Confidence 99999999999999999999998666667778889999999999999999999999999999998875555667889999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|+++++++.++++.+.++++.++++++.+++++.|+++....+....+.+.+.++++.+......++.....++.....+
T Consensus 306 ~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (434)
T 3l44_A 306 NPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGK 385 (434)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHH
Confidence 99999999999998877889999999999999999998777777667888899999988644333332222334455678
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.|+++||.+++++...+++++.++++++++++++|++++.+
T Consensus 386 ~~~~l~~~Gv~v~~~~~~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 386 FFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp HHHHHHHTTEECCSSTTCCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeecCCCcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887777888899999999999999999864
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-50 Score=369.90 Aligned_cols=365 Identities=52% Similarity=0.899 Sum_probs=298.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|++++++.+++++...++++++...++++++++.+++.+++++++||++|++.++++++.+++++.||++++
T Consensus 64 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~ 143 (429)
T 4e77_A 64 PMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEG 143 (429)
T ss_dssp TCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETT
T ss_pred ccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcC
Confidence 37899999999999999998866667788999999999999998789999999999999999998887778899999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+||+.+...+...+.+......+...++.......+..++++|+++|+++++++++++++++++|+++++|.+.++++|+
T Consensus 144 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l 223 (429)
T 4e77_A 144 CYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFL 223 (429)
T ss_dssp CCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred ccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHH
Confidence 99999876665554433222223344444444556677888899999999997666899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||++||+||+|++|+.|..+..+.+++.||++|+||++++|+|+|++++++++++.+...+...+++|++.
T Consensus 224 ~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~ 303 (429)
T 4e77_A 224 PGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred HHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence 99999999999999999999998666677778899999999999999999999999999999998875545567889999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC-CCcccchhcccccHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFA 322 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (368)
|+++++++.++++.++++++.++++++.+++++.|+++....+......+.+.++++.+... ...++.....++.....
T Consensus 304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T 4e77_A 304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFK 383 (429)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHH
Confidence 99999999999998877889999999999999999998877777767888899999988653 12333333334445568
Q ss_pred HHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 323 RFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 323 ~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++++.|+++||.+.+++.+.+++++.++++|+++++++|+++++++
T Consensus 384 ~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 384 RFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp HHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCeEEeecCCCCEEEeccCCHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999877777888999999999999999998763
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=374.07 Aligned_cols=364 Identities=55% Similarity=0.912 Sum_probs=307.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|++++++.+++++...++++++...+|++++++.+++.+++++++||++|++.++++++.+++++.||++++
T Consensus 64 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~ 143 (429)
T 3k28_A 64 PLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIG 143 (429)
T ss_dssp TCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred hcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 47899999999999999998876667888999999999999998789999999999999999999887778889999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+||+.+...+...+.+......+...+++......++.++++|+++++++++++++++++++++|+++++|.+.++++++
T Consensus 144 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 223 (429)
T 3k28_A 144 CYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFL 223 (429)
T ss_dssp CCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHH
T ss_pred CcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHH
Confidence 99999888777766654433344444443333346677888899999999987656899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||++||+||+|++|+.|..+..+.+++.||+.+|||++++|+|+||+++++++++.+...+...+++|+++
T Consensus 224 ~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~ 303 (429)
T 3k28_A 224 EGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCC
Confidence 99999999999999999999988556666677889999999999999989999999999999998875455567789999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|+++++++.++++.++ +++.++++++++++++.|+++....+....+.+.+.++++.+......++.....++.....+
T Consensus 304 ~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
T 3k28_A 304 NPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAA 382 (429)
T ss_dssp CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHH
Confidence 9999999999999775 668889999999999999998777777667888899999987654444444444455556788
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+++.|+++||.+++++...+++++.++++++++++++|++++.++
T Consensus 383 ~~~~l~~~Gv~v~~~~~~~~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 383 YYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHTTEECCSSTTSCBCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCeEEecCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777778888999999999999999998753
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=365.51 Aligned_cols=355 Identities=24% Similarity=0.317 Sum_probs=289.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.+++.+..+ ++.+.+...+|++.|.+..+ +.+.++|++||++|++.|+++++.++++.+|
T Consensus 75 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~i 154 (456)
T 4atq_A 75 VTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAV 154 (456)
T ss_dssp TCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEE
T ss_pred HHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeE
Confidence 578999999999999999988543 34567888999999999997 3789999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCcc-ccCC-CCCCCCCCCCCCcccc---cCCCCHHHHHHHHHc-----CCCCeEEEEEcc
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVA-TLGL-PDSPGVPKGATYETLT---APFNDVSALENLFEN-----NKGEIAAIILEP 148 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~---~~~~d~~~le~~~~~-----~~~~~~~~~~~~ 148 (368)
|.+.++|||.+..++..++.... ...+ +...++.......... ...++.+.+++.+.. ++++++++++||
T Consensus 155 i~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEP 234 (456)
T 4atq_A 155 VAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEP 234 (456)
T ss_dssp EEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred EEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEecc
Confidence 99999999999988888776432 1111 1111111000000000 111234444443331 346899999999
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+.+++|.+.++++|+++++++|++||++||+||+++|| |+|..++++++++.||+++++|+++||+++|.+++++++++
T Consensus 235 iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~ 314 (456)
T 4atq_A 235 IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLD 314 (456)
T ss_dssp SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHT
T ss_pred ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHh
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999988
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-----CCceEEeeccceEEEEe
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFF 302 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 302 (368)
.+. ...+++||++|++++++++++++.++++++.++.++..++++++|+++..++ +.+..+++.|.++++++
T Consensus 315 ~~~---~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel 391 (456)
T 4atq_A 315 AVH---PGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIEL 391 (456)
T ss_dssp TSC---TTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEE
T ss_pred ccc---ccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEE
Confidence 886 4558899999999999999999999999999999999999999999988765 34567899999999998
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Cc--cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EA--GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~--~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...... .+.......+.+.|+++|+++.+.+. .. +.|+++++++++++++++|+++++.
T Consensus 392 ~~~~~~------~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 392 VQPGSK------EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp BCTTSC------CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCC------CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 653211 13445567899999999999987543 22 3578999999999999999999875
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-50 Score=370.22 Aligned_cols=365 Identities=70% Similarity=1.163 Sum_probs=310.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|++++++.+++++...++++++...++++++++.+++.+++++++||++|++.++++++.++++++||++++
T Consensus 63 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~ 142 (427)
T 3fq8_A 63 PAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEG 142 (427)
T ss_dssp TCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEET
T ss_pred hhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECC
Confidence 37899999999999999998866666788999999999999998789999999999999999998887778889999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+||+.+..+....+.+.....++...++......++..++++|+++|+++++++++++++++++|+++++|.+.++++|+
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l 222 (427)
T 3fq8_A 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred CcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHH
Confidence 99998887776666544333334444443333445677788899999999998767899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||++||+||+|+||+.|..+..+.+++.||+.|+||++++|+|+||+++++++++.+...+...+++|+++
T Consensus 223 ~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~ 302 (427)
T 3fq8_A 223 EGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSG 302 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCc
Confidence 99999999999999999999988556666677889999999999999999999999999999998875555567889999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|+++++++.++++.+.++++.++++++.+++++.|+++....+.+....+.+.++++.+......++.....++.....+
T Consensus 303 ~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (427)
T 3fq8_A 303 NPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSR 382 (427)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHH
Confidence 99999999999998877889999999999999999998877776667778899999988654433333333445555678
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+++.|+++||.+++++.+.+++++.++++++++++++|++++.++
T Consensus 383 l~~~l~~~Gi~v~~~~~~r~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 383 FHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCcEEecCCCCCEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999877777888999999999999999998764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=368.03 Aligned_cols=361 Identities=17% Similarity=0.190 Sum_probs=292.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC----CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|+|.+++.+++++...+ +.+++...+|+++|.+..+ +.++|+|++||++|++.|+++++.+
T Consensus 78 ~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~ 157 (473)
T 4e3q_A 78 NMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGK 157 (473)
T ss_dssp TCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999986432 4467888999999999998 6899999999999999999999865
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC----------CHHHHHHHHHc-CCCCe
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFEN-NKGEI 141 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~~~~-~~~~~ 141 (368)
+++.+||.+.++|||.+..++..++.+......+...+..+...+..+..+.. ..+++++.+.+ +++++
T Consensus 158 ~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~i 237 (473)
T 4e3q_A 158 PQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTI 237 (473)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCce
Confidence 45678999999999999999998876543322233333222111111111111 13556666654 55689
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceee
Q 017633 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAY 219 (368)
Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v 219 (368)
+++++||+.+++|.+.++++|+++|+++|++||++||.||+++|| |+|..++++++++.||+++++|++++| +|+|.+
T Consensus 238 Aavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av 317 (473)
T 4e3q_A 238 AGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAV 317 (473)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEE
T ss_pred EEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccc
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999987 899999
Q ss_pred eehHHHHHHhcC----CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 220 GGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 220 ~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
++++++++.+.. .+.+.+++||++|++++++++++++.++++++.++.++..++++++|+++.. .+....+++.|
T Consensus 318 ~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~-~~~v~~vRG~G 396 (473)
T 4e3q_A 318 ILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIG 396 (473)
T ss_dssp EECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT-STTEEEEEEET
T ss_pred cccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhc-CCCeeEEeecc
Confidence 999998877642 2356789999999999999999999999999999999999999999998754 45567899999
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++++++....... ....+.......+.+.++++|+++++.++.. +.|++.++++|+++++++|++++++
T Consensus 397 l~~gielv~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 397 FMWALEAVKDKASK--TPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp TEEEEEECSBTTTT--BCCCGGGCHHHHHHHHHHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCcccc--ccccccHHHHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999986532111 0011223346789999999999999877532 4578999999999999999999875
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=348.22 Aligned_cols=348 Identities=23% Similarity=0.310 Sum_probs=285.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||++|+|++++.+++.+..++ .++++...+|++++++.++ ..+++++++||++|++.|+++++.+++++.|
T Consensus 72 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~i 151 (451)
T 3oks_A 72 VTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAV 151 (451)
T ss_dssp TCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEE
T ss_pred ccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeE
Confidence 5789999999999999999876443 3567889999999999997 4689999999999999999999887888999
Q ss_pred EEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCC------------------CHHHHHHHHHc--C
Q 017633 79 IKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN------------------DVSALENLFEN--N 137 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------d~~~le~~~~~--~ 137 (368)
|++.++|||.+...+..++.. .....+. .....+..++.. +++.+++.+.+ .
T Consensus 152 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 224 (451)
T 3oks_A 152 VAFDHAYHGRTNLTMALTAKVMPYKDGFG-------PFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIG 224 (451)
T ss_dssp EEETTCCCCSSHHHHHHCCCCTTTTTTCC-------SCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTC
T ss_pred EEEcCCcCCccHHHHHhcCCCcccccCCC-------CCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcC
Confidence 999999999999888887653 2111111 111122333322 24444455543 2
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccc
Q 017633 138 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPV 216 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~i 216 (368)
++++++++++|+++++|.+.++++|+++|+++|++||++||+||+|++| +.|..+..+++++.||+++|||++++|+|+
T Consensus 225 ~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~i 304 (451)
T 3oks_A 225 ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPL 304 (451)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSC
T ss_pred CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcce
Confidence 3579999999999999999999999999999999999999999999999 888888888999999999999999999999
Q ss_pred eeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 217 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 217 G~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
||+++++++++.+.. ..+.+|+++|+++++++.++++.+.++++.++++++.+++++.|.++...++....+.+.|.
T Consensus 305 G~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~ 381 (451)
T 3oks_A 305 SAVTGRAEIMDSPHV---SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGA 381 (451)
T ss_dssp EEEEEEHHHHTCSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT
T ss_pred EEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeE
Confidence 999999999888773 44778999999999999999998877889999999999999999998877777777888899
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++++.+.... .+.+......++++.|+++||.+.+++. ..+ ++++.++++++++++++|++++.+
T Consensus 382 ~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 382 MIAMELVKAG------TTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEEEEEBSTT------SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEecCc------cCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999885311 0112345577899999999999998754 333 457888999999999999999865
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=347.82 Aligned_cols=346 Identities=26% Similarity=0.348 Sum_probs=283.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|++++.+++++..++ .++.+...+|++++++.++ ..+++++++||++|++.++++++.+++++.|
T Consensus 75 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~i 154 (453)
T 4ffc_A 75 VTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAV 154 (453)
T ss_dssp TCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEE
T ss_pred cCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEE
Confidence 5789999999999999999886443 3577889999999999997 3689999999999999999999877888999
Q ss_pred EEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCC----C-------------HHHHHHHHHcCCCC
Q 017633 79 IKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN----D-------------VSALENLFENNKGE 140 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~~~~~~~~ 140 (368)
|++.++|||.+...+..++.. .....+.. ....+..++.. | ++.+++.+. +++
T Consensus 155 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~ 225 (453)
T 4ffc_A 155 VAFDNAYHGRTNLTMALTAKSMPYKSQFGP-------FAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQS 225 (453)
T ss_dssp EEETTCCCCSSHHHHHHCCCCTTTTTTSCS-------CCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGG
T ss_pred EEEcCccCCcchHHHhhcCCCcccccCCCC-------CCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCC
Confidence 999999999999888887653 11111110 11122222221 2 244555443 347
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceee
Q 017633 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 219 (368)
Q Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v 219 (368)
+++++++|+++++|.+.++++|+++|+++|++||++||+||+|++| +.|..++.+++++.||+.+|||++++|+|+||+
T Consensus 226 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~ 305 (453)
T 4ffc_A 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAV 305 (453)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEE
T ss_pred EEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEE
Confidence 8999999999999999999999999999999999999999999999 888878888899999999999999999999999
Q ss_pred eehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 220 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
++++++++.+.. ..+.+|+++|+++++++.++++.+.++++.++++++.+++++.|.++...++....+.+.|.+++
T Consensus 306 ~~~~~i~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~ 382 (453)
T 4ffc_A 306 TGRAELMDAVYA---GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLA 382 (453)
T ss_dssp EEEHHHHTTSCT---TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEE
T ss_pred EECHHHHhhhcc---cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEE
Confidence 999999888873 44778999999999999999998877889999999999999999998878777677888899999
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccc--ccccCCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~--~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++..... +.++.....++++.|+++||.+.+++. ..+ ++++.++++++++++++|++++.+
T Consensus 383 ~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 383 IEIVKPGT------LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp EEEBCTTS------CCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcc------cCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 98853110 112345578899999999999998754 333 457888999999999999999865
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=353.04 Aligned_cols=345 Identities=22% Similarity=0.305 Sum_probs=281.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
++++||++|++++++.+++++...+ +++++...+|++++++.++ +.+++++++||++|++.|+++++.+ +
T Consensus 86 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~ 165 (457)
T 3tfu_A 86 TAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP 165 (457)
T ss_dssp TCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 5789999999999999999885432 3567889999999999998 7789999999999999999999876 6
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCC-CccccCC-CCCCCCCCCCCCcccccC-----CCCHHHHHHHHHcCCCCeEEEEE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGS-GVATLGL-PDSPGVPKGATYETLTAP-----FNDVSALENLFENNKGEIAAIIL 146 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~d~~~le~~~~~~~~~~~~~~~ 146 (368)
+++.||+++++|||.+..++..++. ......+ +...+ ......| .+|+++|++++++++++++++++
T Consensus 166 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ 239 (457)
T 3tfu_A 166 GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAA------QVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVV 239 (457)
T ss_dssp TCCEEEEETTCCCCSSHHHHTTSCCC----------CCC------CEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCC------ceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 7789999999999999888877442 1111111 10111 1111111 13789999999865568999999
Q ss_pred cc-cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehH
Q 017633 147 EP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRR 223 (368)
Q Consensus 147 ~~-~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~ 223 (368)
+| +++++|.+.++++++++|+++|++||++||+||+|+|| +.|..++.+.+++.||++||||+++|| +|+|++++++
T Consensus 240 ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~ 319 (457)
T 3tfu_A 240 EPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTA 319 (457)
T ss_dssp CSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEH
T ss_pred eCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcH
Confidence 99 88999999999999999999999999999999999999 888888888999999999999999988 6999999999
Q ss_pred HHHHHhc--CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 224 DIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 224 ~~~~~~~--~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
++++.+. ..+...+++|+++|+++++++.++++.++++++.++++++.++++++|+++. ..+....+++.|.+++++
T Consensus 320 ~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~ 398 (457)
T 3tfu_A 320 DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIE 398 (457)
T ss_dssp HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEE
T ss_pred HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEE
Confidence 9999885 2334567899999999999999999998888899999999999999998754 445555677889999988
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.. +.+..++++.|+++||.+.+.+... +.+++.++++|+++++++|++++.++
T Consensus 399 l~~-------------~~~~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 399 CDR-------------PVDLAVATPAALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp ESS-------------CCCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ECC-------------cccHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 742 1125789999999999999876321 23467889999999999999998753
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=352.40 Aligned_cols=355 Identities=19% Similarity=0.259 Sum_probs=287.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
++++||++|+|++++.+++++... +.++++...+|++++++.++ +.+++++++||++|++.|+++++.+ +
T Consensus 65 ~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~ 144 (476)
T 3i5t_A 65 CAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP 144 (476)
T ss_dssp TCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999988532 24678899999999999998 7889999999999999999999887 7
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-----C-C--------HHHHHHHHHc-CC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----N-D--------VSALENLFEN-NK 138 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-d--------~~~le~~~~~-~~ 138 (368)
++++||+++++|||.+..++..++.......+... ..+...+..|. + | +++||+++++ ++
T Consensus 145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIA-----QDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCC-----CTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred CCCEEEEEcCCcCcCChhhccccCChhhccccCCC-----CCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 78899999999999999888887765433222111 11111222222 2 1 7899999875 23
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccc-ccCCCcchhhhhhhccCC-cc
Q 017633 139 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LP 215 (368)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~-~~~~~~di~s~sK~~~~G-~~ 215 (368)
++++++++||+++++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+.++ ++++.||++++||++++| +|
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~p 299 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVP 299 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSC
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcC
Confidence 579999999999999999999999999999999999999999999999 888877788 899999999999999999 99
Q ss_pred ceeeeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 017633 216 VGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291 (368)
Q Consensus 216 iG~v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 291 (368)
+|++++++++++.+... +.+.+++|+++|++++++++++++.++++++.++++++.+++++.|+.+ .+.+....+
T Consensus 300 lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v 378 (476)
T 3i5t_A 300 LGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAET 378 (476)
T ss_dssp CEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEE
T ss_pred eEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEE
Confidence 99999999999988742 2346778999999999999999998877889999999999999999854 355666678
Q ss_pred eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 292 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.|.++++++....... ....+......++++.|+++||.+.+.+ ..+| +++.++++++++++++|++++.+
T Consensus 379 ~~~G~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 379 RSVGLVGCVQCLLDPTRA--DGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp EEETTEEEEEECCC-------CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCceeEEEEecCcccc--ccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 889999999885421000 0000011135688999999999999876 4455 45899999999999999998854
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=349.23 Aligned_cols=359 Identities=20% Similarity=0.252 Sum_probs=291.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh---c---C
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---G 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~---~---~ 74 (368)
++++||++|+|++++.+++++... .+++++...++++++++.++ +.+ +++++||++|++.++++++.+ . +
T Consensus 60 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~ 138 (452)
T 3n5m_A 60 CVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPH 138 (452)
T ss_dssp TCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999987532 34677899999999999987 445 999999999999999998765 4 7
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCC---------HHHHHHHHH-cCCCCeEE
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND---------VSALENLFE-NNKGEIAA 143 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d---------~~~le~~~~-~~~~~~~~ 143 (368)
++.||+++++||+.....+..++.......+ +...+......+.....+++| +++|+++++ .+++++++
T Consensus 139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~ 218 (452)
T 3n5m_A 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAA 218 (452)
T ss_dssp CCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEE
T ss_pred CCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEE
Confidence 8899999999999988888877765432221 222222222233344455566 899999998 44468999
Q ss_pred EEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeee
Q 017633 144 IILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYG 220 (368)
Q Consensus 144 ~~~~~~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~ 220 (368)
++++|+ ++ +|.+.++++++++|+++|++||++||+||+|++| +.|..+..+.+++.||+++|||++++| +|+|+++
T Consensus 219 vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~ 297 (452)
T 3n5m_A 219 FIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATA 297 (452)
T ss_dssp EEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEE
T ss_pred EEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEE
Confidence 999999 78 9989999999999999999999999999999999 888888888999999999999999999 9999999
Q ss_pred ehHHHHHHhcC---CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 221 GRRDIMEMVAP---AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 221 ~~~~~~~~~~~---~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
+++++++.+.. .+...+++|+++|+++++++.++++.++++++.++++++.+++++.|.++...++....+.+.+.+
T Consensus 298 ~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 377 (452)
T 3n5m_A 298 VKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLL 377 (452)
T ss_dssp EEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSC
T ss_pred ECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 99999999864 345567889999999999999999988778899999999999999999987777766778888999
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------Ccccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+++.+....... ...+.....++++.|+++||.+.+++. ..+|+ ++.++++++++++++|++++.++
T Consensus 378 ~~i~~~~~~~~~----~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 378 VGIELVNDKETK----EPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp EEEEEEEETTTT----EECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEecCCccc----CCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 998875321100 000123346789999999999998762 34554 68899999999999999998764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-47 Score=350.59 Aligned_cols=363 Identities=41% Similarity=0.720 Sum_probs=286.7
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+++||.+|++++++.+++.+...++++.+...++++++++++++.+++++++||++|++.++++++.+.++++||+++++
T Consensus 68 ~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~ 147 (434)
T 2epj_A 68 LILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGC 147 (434)
T ss_dssp CTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETC
T ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 57999999999999999988555667888899999999999866789999999999999999987666778899999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
||+.....+...+........+...++......+++.++++|+++|+++++++++++++++++|+++++|.+.++++|++
T Consensus 148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 227 (434)
T 2epj_A 148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLA 227 (434)
T ss_dssp CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHH
T ss_pred cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHH
Confidence 99987766554433111000011112111011235556677999999999864347899999999988898899999999
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
+|+++|++||++||+||+|+||+.|..+..+.+++.||++||||++++|+|+||+++++++++.+...+...+++|+++|
T Consensus 228 ~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~ 307 (434)
T 2epj_A 228 ALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAH 307 (434)
T ss_dssp HHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTC
T ss_pred HHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcC
Confidence 99999999999999999999885565566677888999999999999999999999999998888753334567888999
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
+++++++.++++.+.++++.++++++++++++.|+++..+.+....+.+.+.++++.+.......+...+.++.....++
T Consensus 308 ~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (434)
T 2epj_A 308 PITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKL 387 (434)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHH
Confidence 99999999999988778899999999999999999876556665556778889999874311111111111123346789
Q ss_pred HHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 325 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.|+++||.+.+++...+++++.++++++++++++|++++++
T Consensus 388 ~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 388 HEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp HHHHHHTTEECCSSTTSCEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeccCCCcEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999876667788899999999999999998864
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=346.36 Aligned_cols=360 Identities=53% Similarity=0.893 Sum_probs=285.6
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+++||.+|++++++.+++++...++++.+...++++++++++++.+++++++||++|++.++++++.+.++++||+++++
T Consensus 64 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~ 143 (424)
T 2e7u_A 64 LILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGN 143 (424)
T ss_dssp CTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTC
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 68899999999999999987655677888999999999999976789999999999999999987767778899999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
||+.....+...+.+......|...++......+++.++++|+++|++.++++++++++++++|+++++|.+.++++|++
T Consensus 144 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 223 (424)
T 2e7u_A 144 YHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLK 223 (424)
T ss_dssp CCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHH
T ss_pred cCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHH
Confidence 99987766654433211100111112211011245566778999999999853347899999999998898899999999
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
+|+++ ++||++||+||+|+||+.|..+..+.+++.||++||||++++|+|+||+++++++++.+...+...+++|+++|
T Consensus 224 ~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~ 302 (424)
T 2e7u_A 224 ALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGN 302 (424)
T ss_dssp HHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSC
T ss_pred HHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCC
Confidence 99999 99999999999999885565566677888999999999999999999999999999888753344567888999
Q ss_pred HHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 245 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
+++++++.++++.+.+ +++.+++.+++++++++|+++..+.+....+.+.+.++|+++......++.....++.....+
T Consensus 303 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 382 (424)
T 2e7u_A 303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKR 382 (424)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHH
Confidence 9999999999998877 778999999999999999987666665545677888999987431111111111112344678
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHH
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+++.|+++||.+.+++...+++++.++++++++++++|++++
T Consensus 383 ~~~~l~~~Gv~v~~~~~~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 383 FFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHTTTEECCSSSSSCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCeEEeccCCCceEeeccCCHHHHHHHHHHHHHhC
Confidence 999999999999998766677888999999999999999864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=349.69 Aligned_cols=353 Identities=19% Similarity=0.230 Sum_probs=285.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|+|++++.+++++... .+++++...+|++++++.++ +.+++++++||++|++.++++++.+
T Consensus 66 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~ 145 (472)
T 3hmu_A 66 CVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQ 145 (472)
T ss_dssp TCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999988531 24567899999999999998 6789999999999999999999876
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC----C---C--------HHHHHHHHHcC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---D--------VSALENLFENN 137 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d--------~~~le~~~~~~ 137 (368)
+++++||+++++|||.+...+..++....+..+.. ..+...+..|. + | +++|++++++.
T Consensus 146 ~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~------~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~ 219 (472)
T 3hmu_A 146 PEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL------IPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILEL 219 (472)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCC------CSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCcCCCccHHhhhccCChhhccccCC------CCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999988888776443222210 01111122222 1 2 78899988752
Q ss_pred -CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-c
Q 017633 138 -KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-L 214 (368)
Q Consensus 138 -~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~ 214 (368)
+++++++++||+++++|.+.++++|+++|+++|++||++||+||+|+|| +.|..++.+++++.||+++|||++++| +
T Consensus 220 ~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~ 299 (472)
T 3hmu_A 220 GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYA 299 (472)
T ss_dssp CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSS
T ss_pred CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCc
Confidence 3579999999999999999999999999999999999999999999999 888888888999999999999999976 8
Q ss_pred cceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHHhcCCceEEee
Q 017633 215 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 215 ~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
|+|++++++++++.+. .+...+++|+++|+++++++.++++.++++++.++++ ++.+++++.|+++ .+.+....+++
T Consensus 300 plG~v~~~~~i~~~~~-~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~ 377 (472)
T 3hmu_A 300 PIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKI 377 (472)
T ss_dssp CCEEEEEEHHHHHHHT-TSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEE
T ss_pred ceEEEEECHHHHHhcc-cCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEe
Confidence 9999999999999883 3456678899999999999999999887788999999 9999999999664 44666667888
Q ss_pred ccceEEEEeecCCCcccchhcccc-cHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSE-TTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.|.++++++...... .....+. .....++++.|+++||.+++++ ..+| +++.++++++++++++|++++.+
T Consensus 378 ~G~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 378 VGMMASIALTPNKAS--RAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp ETTEEEEEECSCGGG--TCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEecCccc--cccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999988532100 0000001 2335788999999999999876 4544 46899999999999999998864
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=344.43 Aligned_cols=357 Identities=19% Similarity=0.216 Sum_probs=288.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC----CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|++++++.+++.+.. ..+++++...+|++++++.++ +.+++++++||++|++.++++++.+
T Consensus 62 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~ 141 (460)
T 3gju_A 62 CVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGR 141 (460)
T ss_dssp TCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999988742 235677889999999999987 7789999999999999999998765
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC----CC------------HHHHHHHHHc
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----ND------------VSALENLFEN 136 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d------------~~~le~~~~~ 136 (368)
++++.||+++++|||.+......++.......+.... .+...+..|. +| +++|++++++
T Consensus 142 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~ 216 (460)
T 3gju_A 142 PEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPR-----APVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILA 216 (460)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSC-----TTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCC-----CCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHh
Confidence 5788999999999999998888877654332221110 0111111111 22 6899998874
Q ss_pred -CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-
Q 017633 137 -NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG- 213 (368)
Q Consensus 137 -~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G- 213 (368)
+++++++++++|+++++|.+.++++++++|+++|++||++||+||+|++| +.|..+..+++++.||+++|||++++|
T Consensus 217 ~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~ 296 (460)
T 3gju_A 217 EGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAY 296 (460)
T ss_dssp HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTS
T ss_pred cCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCC
Confidence 33579999999999999999999999999999999999999999999999 888777788899999999999999988
Q ss_pred ccceeeeehHHHHHHhcCC----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 017633 214 LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 289 (368)
Q Consensus 214 ~~iG~v~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 289 (368)
+|+|++++++++++.+... ....+++|+++|+++++++.++++.+.++++.++++++.++++++|.+.+.+++...
T Consensus 297 ~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 376 (460)
T 3gju_A 297 APLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVG 376 (460)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred CCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 8999999999999888521 345677899999999999999999887788999999999999999988877777667
Q ss_pred EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Cccc--cccCCCHHHHHHHHHHHHHHHh
Q 017633 290 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGF--TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~--~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.+.+.++++.+...... .....+......++++.|+++||.+.+++. ..+| +++.++++++++++++|++++.
T Consensus 377 ~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 377 EVRGDGMLAAVEFVADKDD--RVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK 454 (460)
T ss_dssp EEEEETTEEEEEECSBTTT--TBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeeeeEEEEEEEccCccc--cccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 7888899999988642110 000111223467899999999999998763 4445 4588999999999999999986
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 455 ~ 455 (460)
T 3gju_A 455 S 455 (460)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-46 Score=344.68 Aligned_cols=360 Identities=22% Similarity=0.248 Sum_probs=269.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh---cC--
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG-- 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~---~~-- 74 (368)
++++||++|++++++.+++++... .+++++...++++++++.++ +.+++++++||++|++.++++++.+ ++
T Consensus 55 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~ 134 (448)
T 3dod_A 55 LNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134 (448)
T ss_dssp TCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCC
Confidence 578999999999999999987533 34567889999999999997 6789999999999999999999876 66
Q ss_pred -CceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccc--------cCCCCHHHHHHHHHcCCCCeEEE
Q 017633 75 -RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT--------APFNDVSALENLFENNKGEIAAI 144 (368)
Q Consensus 75 -~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~d~~~le~~~~~~~~~~~~~ 144 (368)
+++||+++++|||.....+..++.......+ +....+........+. ...+|+++||+++++++++++++
T Consensus 135 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 214 (448)
T 3dod_A 135 EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAAL 214 (448)
T ss_dssp TCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEE
Confidence 7999999999999988777776654322111 1011111000000000 11124899999998555689999
Q ss_pred EEcccC-CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeee
Q 017633 145 ILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGG 221 (368)
Q Consensus 145 ~~~~~~-~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~ 221 (368)
+++|++ +++|.+.++++++++|+++|++||++||+||+|++| +.|..++.+.+++.||+++|||++++| +|+|++++
T Consensus 215 i~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~ 294 (448)
T 3dod_A 215 SIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFA 294 (448)
T ss_dssp EEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEE
T ss_pred EEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEE
Confidence 999999 999999999999999999999999999999999999 888877888999999999999999999 59999999
Q ss_pred hHHHHHHhcC----CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 222 RRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 222 ~~~~~~~~~~----~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
++++++.+.. .+...+++|+++++++++++.++++.+.++++.++++++.+++++.|.+ +...+....+.+.|.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~ 373 (448)
T 3dod_A 295 TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFM 373 (448)
T ss_dssp EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTE
T ss_pred CHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEE
Confidence 9999998874 1235577899999999999999999887788999999999999999998 6666666677788999
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.+........ ..........++++.|+++||.+.+++ ..++ +++.++++++++++++|++++.+
T Consensus 374 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 374 CGAELVRSKETKE--PYPADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp EEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCccccc--ccchhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998854211000 000001124678999999999999876 4444 47889999999999999999864
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=343.16 Aligned_cols=356 Identities=19% Similarity=0.233 Sum_probs=286.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC-C---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------
Q 017633 4 LIILFPSYLQVLAALGETMKKGT-S---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~-~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------ 72 (368)
++++||++|+|++++.+++++.. . .+++++...++++++++.++ +.+++++++||++|++.++++++.+
T Consensus 61 ~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~ 140 (459)
T 4a6r_A 61 CVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGK 140 (459)
T ss_dssp TCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999998743 1 24578899999999999998 6889999999999999999998765
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC----C---C--------HHHHHHHHHc-
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---D--------VSALENLFEN- 136 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d--------~~~le~~~~~- 136 (368)
+++++||+++++|||........++.......+... ..+...+.+|. + | +++|++++++
T Consensus 141 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 141 PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLP-----IPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCS-----CSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCCccHHHHhhcCChhhccccCCC-----CCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 368899999999999998888887765432222110 11112222222 1 2 7889999875
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-c
Q 017633 137 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-L 214 (368)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~ 214 (368)
+++++++++++|+++++|.+.++++|+++|+++|++||++||+||+|++| +.|..+..+++++.||+++|||++++| +
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~ 295 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSS
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCC
Confidence 23578999999999999999999999999999999999999999999999 888777788899999999999999976 8
Q ss_pred cceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHHhcCCceEEee
Q 017633 215 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 215 ~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
|+|++++++++++.+...+...+++|+++|+++++++.++++.++++++.++++ ++.+++++.|.+.+...+....+.+
T Consensus 296 ~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 375 (459)
T 4a6r_A 296 PIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRG 375 (459)
T ss_dssp CCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999999998887632345677899999999999999999887788999999 9999999999555556666667888
Q ss_pred ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.++++++...... .....+......++++.|+++||.+++++ ..+| +++.++++++++++++|++++.+
T Consensus 376 ~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 376 VGMVQAFTLVKNKAK--RELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp ETTEEEEEECSBTTT--TBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCccc--cccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 899999988642110 00011233446789999999999999976 4444 46889999999999999998864
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=367.54 Aligned_cols=347 Identities=33% Similarity=0.507 Sum_probs=287.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+++||++|+|++++.+++.+...++++++...+|+++|++++++.+.+++++||++|++.|+++++.++++++||++++
T Consensus 111 ~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~ 190 (465)
T 2yky_A 111 AGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDG 190 (465)
Confidence 35799999999999999998865566788999999999999997678999999999999999999887788899999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||++...+ .+ +...+++. .++.++++|+++|++++++++++++++++||+++++|.+.++++|+
T Consensus 191 ~yHG~~~~~~--sg--------~~~~g~~~----~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l 256 (465)
T 2yky_A 191 GYHGGLLNFA--SG--------HAPTNAPY----HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFL 256 (465)
Confidence 9999887666 22 11112111 3455677899999999986546899999999988899899999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC--CCCccccccC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTL 241 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~--~~~~~~~~t~ 241 (368)
++|+++|++||++||+||+|+ ++.|..++.+.+++.||++||||++++|+|+||+++++++++.+.. .+...+.+|+
T Consensus 257 ~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~ 335 (465)
T 2yky_A 257 DLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTF 335 (465)
Confidence 999999999999999999999 8666777788889999999999999999999999999999988875 2334577899
Q ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 242 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
++|++++++++++++.++++++.+++.++.++++++|+++..+.+.+..+++.|.++++.+....+.++...+.++....
T Consensus 336 ~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~ 415 (465)
T 2yky_A 336 NNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLK 415 (465)
Confidence 99999999999999999878899999999999999999987666666678888999999875322222222122223335
Q ss_pred HHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 322 ARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++.|+++||++.+++... +++.++++|+++++++|++++.+
T Consensus 416 ~~~~~~ll~~GV~v~p~~~~~--~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 416 ELFFFHMLRKGIYLAPRGMYA--LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 689999999999999876433 77889999999999999998865
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=331.65 Aligned_cols=338 Identities=24% Similarity=0.255 Sum_probs=284.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh-----cCCc
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRE 76 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~-----~~~~ 76 (368)
.+++||++|++++++.+++++..+. .++.+...++++++++.++ .+++++++||++|++.++++++.+ .+++
T Consensus 47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~ 125 (395)
T 3nx3_A 47 VCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-LERVFFTNSGTESIEGAMKTARKYAFNKGVKGG 125 (395)
T ss_dssp TCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4789999999999999998874322 3567889999999999885 689999999999999999888766 5688
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
+||+++++||+.........+.......+. ....++..++++|+++|+++++ +++++++++|+++++|.+
T Consensus 126 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~~G~~ 195 (395)
T 3nx3_A 126 QFIAFKHSFHGRTLGALSLTANEKYQKPFK-------PLISGVKFAKYNDISSVEKLVN---EKTCAIILESVQGEGGIN 195 (395)
T ss_dssp EEEEETTCCCCSSHHHHTTCCCHHHHGGGC-------SCCSCEEEECTTCHHHHHTTCC---TTEEEEEEESEECTTSCE
T ss_pred EEEEEcCCcCCCCHHHHhhcCCcccccccC-------CCCCCcEEeCCCCHHHHHHhcc---CCeEEEEEeCccCCCCcc
Confidence 999999999999888777766533221111 1123466677889999999987 579999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHH-HHHhcCCCC
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI-MEMVAPAGP 234 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~-~~~~~~~~~ 234 (368)
.++++++++|+++|++||++||+||+|++| +.|..+..+.++..||+.++||++++|+|+|++++++++ ++.+..
T Consensus 196 ~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~--- 272 (395)
T 3nx3_A 196 PANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEA--- 272 (395)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCT---
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCC---
Confidence 999999999999999999999999999999 777777788899999999999999999999999999998 888763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..++.+++.++++++++.++++.+.++++.++++++.+++++.|.++...++......+.+.++++.+..
T Consensus 273 ~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~---------- 342 (395)
T 3nx3_A 273 GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDK---------- 342 (395)
T ss_dssp TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECT----------
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCC----------
Confidence 3466888999999999999999887788999999999999999999877777666677788898988742
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.....++.+.|+++||.+++++...+|+ ++.++++++++++++|+++++++
T Consensus 343 ---~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 395 (395)
T 3nx3_A 343 ---SVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKSF 395 (395)
T ss_dssp ---TSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ---cchHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 1125788999999999999987666654 67889999999999999998763
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=330.37 Aligned_cols=348 Identities=21% Similarity=0.283 Sum_probs=280.0
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CC-CeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++||.+|++++++.+++.+...+ .++++...++++++++.++ +. +++++++||++|++.++++++.+.++++|
T Consensus 54 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~v 133 (439)
T 3dxv_A 54 AASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV 133 (439)
T ss_dssp TCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEE
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3569999999999999999875433 3467889999999999997 55 79999999999999999988766788899
Q ss_pred EEEcCCCCCCchhhhhhcCCCc--cccCCCCCCCCCCCCCCcccccCCC----------CHHHHHHHHH-cCCCCeEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFE-NNKGEIAAII 145 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~~~-~~~~~~~~~~ 145 (368)
|+++++||+.+...+...+... ....+.. ....+..++++ |+++|+++++ .+++++++++
T Consensus 134 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi 206 (439)
T 3dxv_A 134 IAFAGAYHGCTVGSMAFSGHSVQADAAKADG-------LILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAF 206 (439)
T ss_dssp EEETTCCCCSSHHHHCC-------------C-------EEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred EEECCCCCCCcHHHHhhcCCCchhhccccCC-------CCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999999888877766532 1111100 00112222322 5899999994 4446899999
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHH
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~ 224 (368)
++|+++++|.+.++++++++|+++|++||++||+||+|++| +.|..+..+.+++.||++||||++++|+|+||++++++
T Consensus 207 ~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~ 286 (439)
T 3dxv_A 207 IEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAE 286 (439)
T ss_dssp ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHH
T ss_pred EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHH
Confidence 99999999999999999999999999999999999999999 77777777888999999999999999999999999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+++.+.. ..+.+++ .++++++++.++++.+.++++.++++++.+++++.|.++...++......+.+.++++.+..
T Consensus 287 ~~~~~~~---~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (439)
T 3dxv_A 287 ILDCASA---FAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVC 362 (439)
T ss_dssp HHTSCSS---SSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEE
T ss_pred HHhhhcC---CCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEec
Confidence 9888873 3456788 99999999999999887788999999999999999999887777666778889999988753
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.... ..+......++++.|+++||.+.+++. ..+|+ ++.++++++++++++|++++.+
T Consensus 363 ~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 363 DRQS-----REPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp ETTT-----TEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred Cccc-----cCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2110 112344567899999999999998764 34443 6788999999999999999865
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=329.80 Aligned_cols=352 Identities=21% Similarity=0.271 Sum_probs=266.9
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~------~ 73 (368)
++++||++|++++++.+++++... ..++++...++++++++.++ +.+++++++||++|++.++++++.+ +
T Consensus 40 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~ 119 (430)
T 3i4j_A 40 VANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119 (430)
T ss_dssp TCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999887542 24667889999999999998 6789999999999999999988766 6
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCC--cccccCCC--------CHHHHHHHHHcC-CCCeE
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY--ETLTAPFN--------DVSALENLFENN-KGEIA 142 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------d~~~le~~~~~~-~~~~~ 142 (368)
+++.||+++++||+.........+.......+.. ... .+..++.+ |+++|++++++. +++++
T Consensus 120 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~ 192 (430)
T 3i4j_A 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTP-------LMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVA 192 (430)
T ss_dssp TCCEEEEETTC--------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEE
T ss_pred CCcEEEEEeCCcCCCCcccccccCccccccccCC-------cCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEE
Confidence 7889999999999988777666655332211100 011 23344443 458999999753 25789
Q ss_pred EEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc-CCCcchhhhhhhccCC-cccee
Q 017633 143 AIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GVTPDLTTLGKIIGGG-LPVGA 218 (368)
Q Consensus 143 ~~~~~~~~~-~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~-~~~~di~s~sK~~~~G-~~iG~ 218 (368)
+++++|+++ ++|...++++++++|+++|++||++||+||+|++| +.|..+..+.+ ++.||+++|||++++| +|+||
T Consensus 193 ~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~ 272 (430)
T 3i4j_A 193 AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAG 272 (430)
T ss_dssp EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEE
T ss_pred EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCccccEE
Confidence 999999999 89999999999999999999999999999999999 88877788888 9999999999999999 99999
Q ss_pred eeehHHHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 219 YGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 219 v~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
+++++++++.+... +...+.+++++|+++++++.++++.+.++++.++++++.+++++.|.+++...+....+.+.+.+
T Consensus 273 ~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 352 (430)
T 3i4j_A 273 LLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLL 352 (430)
T ss_dssp EEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE
T ss_pred EEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEE
Confidence 99999999888642 22456788999999999999999988778899999999999999999987777766677788999
Q ss_pred EEEEeecCCCcccchhcccc-cHHHHHHHHHHHHcCeeecCCC-------CCccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSE-TTKFARFYRGMLEEGVYFAPSQ-------FEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~~~~~~-------~~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.+....... ... +....++++.|+++||.+.++. ...+| +++..+++++++++++|++++++
T Consensus 353 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 353 LGVVLGDLATGQ-----AFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EEEEEC-----------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccC-----CCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 998874211000 000 1124679999999999999872 23344 45678999999999999999865
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=327.60 Aligned_cols=339 Identities=20% Similarity=0.261 Sum_probs=262.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~ 73 (368)
.+++||.+|++++++.+++++... ..++.+...+++++++++++ .+++++++||++|++.++++++.+ +
T Consensus 76 ~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~ 154 (433)
T 1z7d_A 76 SVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLG-YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPE 154 (433)
T ss_dssp TTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCT
T ss_pred hcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcC-CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC
Confidence 357999999999999999987432 23567788999999999884 689999999999999999987643 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++||+++++||+.+..++...+.+.....+. ....++..+|++|+++|+++++. +++++++++|+++++
T Consensus 155 gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-------p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~ 225 (433)
T 1z7d_A 155 NMAKIVVCKNNFSGRTLGCISASTTKKCTSNFG-------PFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEA 225 (433)
T ss_dssp TCCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTT
T ss_pred CCCeEEEEeCCcCCcchhhhcccCCccccccCC-------CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCC
Confidence 448999999999998776666555322111110 01123456677799999999952 478999999999888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++++++|+++|++||++||+||+|+|| +.|..+.++.+++.||++||||++++| +|+||+++++++++.+..
T Consensus 226 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 305 (433)
T 1z7d_A 226 GVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP 305 (433)
T ss_dssp TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc
Confidence 988888888999999999999999999999999 878777778889999999999999999 999999999998887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+..|+++|+++++++.++++.+.++++.+++++++++++++|+++....+....+.+.+.++++.+....
T Consensus 306 ---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~----- 377 (433)
T 1z7d_A 306 ---GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL----- 377 (433)
T ss_dssp ---TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-----
T ss_pred ---ccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-----
Confidence 346688899999999999999988777899999999999999998875445544456778889898874210
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..++++.|+++||.+.+++...+++ ++.++++|+++++++|++++.+
T Consensus 378 -------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 378 -------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp -------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 124689999999999999875555554 6788999999999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=331.47 Aligned_cols=357 Identities=31% Similarity=0.459 Sum_probs=264.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+++||.+|++++++.+++.+...++++.+...++++++++.+++.+++++++||++|++.++++++.+.++++||+++++
T Consensus 69 ~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~ 148 (453)
T 2cy8_A 69 LVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGH 148 (453)
T ss_dssp CTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC-
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 67899999999999999987655677889999999999999877789999999999999999987666677899999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
||+.....+...+.... .+...++.......++.++++|+++|+++++++++++++++++|+++++|.+.+++++++
T Consensus 149 yhg~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~ 225 (453)
T 2cy8_A 149 YHGWHDFSASGYNSHFD---GQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLR 225 (453)
T ss_dssp ------------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHH
T ss_pred cCCCchhhHhhcCCccC---CCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHH
Confidence 99987765543332000 011112211112345566777999999999854347899999999888888889999999
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCC--CCccccccCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLS 242 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~--~~~~~~~t~~ 242 (368)
+|+++|++||++||+||+|++|+.|..+..+.+++.||++|+||++++|+|+||+++++++++.+... +...+++|++
T Consensus 226 ~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~ 305 (453)
T 2cy8_A 226 EGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFT 305 (453)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CC
T ss_pred HHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCC
Confidence 99999999999999999999885555566677888999999999999999999999999998887641 2234667889
Q ss_pred CCHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec-----C-CCcccchhcc
Q 017633 243 GNPLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKK 315 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~ 315 (368)
+|+++++++.++++. + .+++.+++++++++++++|+++..+.+....+.+.+.++|+.+.. . ....+.....
T Consensus 306 ~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 384 (453)
T 2cy8_A 306 GNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVAR 384 (453)
T ss_dssp CCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred CCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEecccccccccccccccccc
Confidence 999999999999998 7 678899999999999999998765566555567788899998742 0 0000000000
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.....++++.|+++||.+.+++ .+++++.++++++++++++|++++.+
T Consensus 385 ~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 385 PDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CCHHHHHHHHHHHHHTTEECBTTT--EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCeEEeCCC--CEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 122345789999999999997654 25678889999999999999998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=325.48 Aligned_cols=357 Identities=22% Similarity=0.257 Sum_probs=275.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCC--CCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 5 IILFPSYLQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+++||++|++++++.+++.+.. ..+++.+...++++.++++++ +.+++++++||++|++.++++++.++++++||++
T Consensus 55 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~ 134 (433)
T 1zod_A 55 AVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGF 134 (433)
T ss_dssp CTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 4789999999999999987742 235677888999999999998 6889999999999999999887655677899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC---------CHHHHHHHHHcC-CCCeEEEEEcccCC
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---------DVSALENLFENN-KGEIAAIILEPVVG 151 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~~le~~~~~~-~~~~~~~~~~~~~~ 151 (368)
+++||+.....+...+........+...++.....+..+..+++ |+++|+++++++ ++++++++++|+++
T Consensus 135 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~ 214 (433)
T 1zod_A 135 AQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILS 214 (433)
T ss_dssp TTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEET
T ss_pred CCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccC
Confidence 99999998877766544211100011111110000011112233 389999999752 24789999999988
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhc
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~ 230 (368)
++|...++++++++|+++|++||++||+||+|++| +.|..+..+.++..||++||||++++|+|+||+++++++++.+.
T Consensus 215 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~ 294 (433)
T 1zod_A 215 SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAH 294 (433)
T ss_dssp TTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhc
Confidence 88888888999999999999999999999999999 77776667778889999999999999999999999999988876
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.. ...+++|+++|+++++++.++++.+.++++.+++++++++++++|+++....+......+.+.++++.+......
T Consensus 295 ~~-~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~-- 371 (433)
T 1zod_A 295 EL-GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRT-- 371 (433)
T ss_dssp HT-TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT--
T ss_pred cC-CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc--
Confidence 42 223447889999999999999998877789999999999999999887655565455677788889887531100
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCC----Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+......++++.|+++||.+.+++. ..+|+ ++.++++++++++++|++++.+
T Consensus 372 ---~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 372 ---KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp ---TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 001123457899999999999998752 34454 6688999999999999998865
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=324.29 Aligned_cols=339 Identities=22% Similarity=0.285 Sum_probs=272.8
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------c
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------T 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~ 73 (368)
.+++||.+|++++++.+++++...+ .++.+...+++++++++++ .+++++++||++|++.++++++.+ +
T Consensus 87 ~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~ 165 (439)
T 2oat_A 87 AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFN-YHKVLPMNTGVEAGETACKLARKWGYTVKGIQK 165 (439)
T ss_dssp TTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred cccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3579999999999999999874332 2456788999999999884 689999999999999999988643 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++++||+++++||+.+...+...+.+.....+. ....++..+|++|+++|+++++. +++++++++|+++++
T Consensus 166 g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-------p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~ 236 (439)
T 2oat_A 166 YKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG-------PFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 236 (439)
T ss_dssp TCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC-------SCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTT
T ss_pred CCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC-------CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCC
Confidence 447999999999999887776655322111110 01123566777799999999962 478999999999988
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++++++|+++|++||++||+||+|+|| +.|..+.++.+++.||++|+||++++| +|+|++++++++++.+..
T Consensus 237 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 237 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCC
Confidence 988888888999999999999999999999999 778777778889999999999999999 999999999998887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
..+.+|+++|+++++++.++++.+.++++.++++++++++++.|+++ ..+....+.+.+.++++.+....
T Consensus 317 ---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~----- 386 (439)
T 2oat_A 317 ---GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK----- 386 (439)
T ss_dssp ---TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCS-----
T ss_pred ---CCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCc-----
Confidence 34668899999999999999998877788899999999999988775 23333346677888888874210
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..+..++++.|+++||.+.+.+...+|+ ++.++++|+++++++|++++.++
T Consensus 387 ------~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 387 ------DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp ------SCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ------cHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence 0124689999999999999976555554 67889999999999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=319.80 Aligned_cols=338 Identities=24% Similarity=0.301 Sum_probs=270.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh------cCCc
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRE 76 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~------~~~~ 76 (368)
+++||.+|++++++.+++++.... .++.+...+++++++++++ .+++++++||++|++.++++++.+ ++++
T Consensus 69 ~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~ 147 (420)
T 2pb2_A 69 TALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATF-AERVLFMNSGTEANETAFKLARHYACVRHSPFKT 147 (420)
T ss_dssp CTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSS-CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred cccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC-CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 689999999999999998774322 2467889999999999985 689999999999999999988654 4556
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
+||+++++||+....++...+.+.....+.+ ...++..++++|+++|+++++ +++++++++|+++++|.+
T Consensus 148 ~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p-------~~~~~~~~~~~d~~~le~~i~---~~~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 148 KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP-------KPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp EEEEETTCCCCSSHHHHHHSSCHHHHTTSSS-------CCSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSE
T ss_pred EEEEEeCCcCCcCHHHHHhcCCccccccCCC-------CCCCeEEecCCCHHHHHHHhc---cCceEEEEeCCcCCCCee
Confidence 8999999999998877776665322111100 112345566679999999997 479999999998877877
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
.++.+++++|+++|++||++||+||+|++| +.|..+..+.+++.||++||||++++|+|+|++++++++++.+.. .
T Consensus 218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~---~ 294 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHV---G 294 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC-----
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcC---C
Confidence 788888999999999999999999999999 777766667788889999999999999999999999888777763 2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
.+..++++|+++++++.++++.+.++++.++++++++++++.|+++....+......+.+.++++.+...
T Consensus 295 ~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~---------- 364 (420)
T 2pb2_A 295 SHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPK---------- 364 (420)
T ss_dssp --CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGG----------
T ss_pred CcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCC----------
Confidence 3567889999999999999998876678889999999999999886544454445667788888877421
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++.+.|+++||.+.+++...+|+ ++.++++|+++++++|++++++
T Consensus 365 -~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 365 -YKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp -GTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 00124689999999999999986555554 4788999999999999998865
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=322.65 Aligned_cols=340 Identities=21% Similarity=0.258 Sum_probs=271.7
Q ss_pred eeccCCCcHHHH-H-HHHH---HHHcCCCC--CCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 4 LIILFPSYLQVL-A-ALGE---TMKKGTSF--GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 4 ~~~~g~~~~~v~-~-a~~~---~~~~~~~~--~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
++++||++|+|+ + ++.+ ++.+...+ .++.+...++++.++++++ +.+++++++||++|++.++++++.+.+
T Consensus 65 ~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~ 144 (449)
T 2cjg_A 65 SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKS 144 (449)
T ss_dssp TCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhc
Confidence 368999999999 9 9999 87775433 2567889999999999985 678999999999999999988764432
Q ss_pred ------------CceEEEEcCCCCCCchhhhhhcCC-CccccCCCCCCCCCCCCCCcccccCCCC---------------
Q 017633 75 ------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFND--------------- 126 (368)
Q Consensus 75 ------------~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d--------------- 126 (368)
+++||+++++||+.+...+...+. +.....+... ..+++.+|++|
T Consensus 145 ~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~ 217 (449)
T 2cjg_A 145 RHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKF-------DWPRIDAPYMRPGLDEPAMAALEAEA 217 (449)
T ss_dssp HHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCC-------CCCEECCCCCCTTCCHHHHHHHHHHH
T ss_pred ccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCC-------CCCcEEEcCCCchhhccccchhhHHH
Confidence 789999999999998877777664 1111111111 12334444444
Q ss_pred HHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhh
Q 017633 127 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 205 (368)
Q Consensus 127 ~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s 205 (368)
+++|++.++++.+++++++++|+++++|...++++++++|+++|++||++||+||+|+|| +.|..+..+.+++.||+++
T Consensus 218 ~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t 297 (449)
T 2cjg_A 218 LRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA 297 (449)
T ss_dssp HHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE
T ss_pred HHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEE
Confidence 345888887544689999999999888988999999999999999999999999999999 8787777778889999999
Q ss_pred hhhhccCCccceeeeehHHHHHHhcC--CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Q 017633 206 LGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 283 (368)
Q Consensus 206 ~sK~~~~G~~iG~v~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 283 (368)
+||++ |+||+++++++++.+.. .....+++|+++|+++++++.++++.+.++++.+++++++++++++|+++..
T Consensus 298 ~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 373 (449)
T 2cjg_A 298 FGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAA 373 (449)
T ss_dssp ECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 79999999888776332 1223466889999999999999999887778899999999999999998765
Q ss_pred hcCC-ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHH
Q 017633 284 KAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 360 (368)
Q Consensus 284 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 360 (368)
..+. ...+.+.+.++++++. ......++++.|+++||.+.+++...+|+ ++.++++++++++++
T Consensus 374 ~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~ 440 (449)
T 2cjg_A 374 DFPAVVLDPRGRGLMCAFSLP-------------TTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAA 440 (449)
T ss_dssp HSTTTSEEEEEETTEEEEECS-------------SHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHH
T ss_pred hCCCceeeEeeccEEEEEEEC-------------ChHHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5654 4456777888888763 22345789999999999999986555554 778999999999999
Q ss_pred HHHHHhh
Q 017633 361 AEKVLRQ 367 (368)
Q Consensus 361 l~~~l~~ 367 (368)
|++++.+
T Consensus 441 l~~~l~~ 447 (449)
T 2cjg_A 441 VRSALPV 447 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=345.89 Aligned_cols=359 Identities=18% Similarity=0.252 Sum_probs=276.0
Q ss_pred eeccCCC-cHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHH-HHhc---
Q 017633 4 LIILFPS-YLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--- 73 (368)
Q Consensus 4 ~~~~g~~-~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~-~~~~--- 73 (368)
++++||+ +|+|.+++.+++++..+. ++++++..+|+++|++..+ + .++++|++||++|++.|++++ +.+.
T Consensus 391 ~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~ 470 (831)
T 4a0g_A 391 TQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH 470 (831)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhc
Confidence 5789999 999999999999885433 3567899999999999997 4 689999999999999999998 4442
Q ss_pred -----------CCceEEEEcCCCCCCchhhhhhcCCCccccC--CCCCCCCC-CCC--------CCcccccC--------
Q 017633 74 -----------GRERIIKFEGCYHGHADPFLVKAGSGVATLG--LPDSPGVP-KGA--------TYETLTAP-------- 123 (368)
Q Consensus 74 -----------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~--------~~~~~~~~-------- 123 (368)
++.+||.+.++|||.+..++..++....... .+...+.. ... +...+..|
T Consensus 471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~ 550 (831)
T 4a0g_A 471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAP 550 (831)
T ss_dssp TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCS
T ss_pred CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccccc
Confidence 3568999999999999999999876433220 01000000 000 00000111
Q ss_pred ----CCC------------------HHHHHHHHH-----cCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCC
Q 017633 124 ----FND------------------VSALENLFE-----NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGA 175 (368)
Q Consensus 124 ----~~d------------------~~~le~~~~-----~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~~i~~l~~~~~~ 175 (368)
+++ .+.|++.+. +++++++++++||+ .+.+|.+.++++|+++|+++|++||+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gi 630 (831)
T 4a0g_A 551 EYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKI 630 (831)
T ss_dssp STTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTC
T ss_pred ccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCC
Confidence 112 256777776 34568999999997 89999999999999999999999999
Q ss_pred EEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCCC---CccccccCCCCHHHHHH
Q 017633 176 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTA 250 (368)
Q Consensus 176 ~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~a 250 (368)
+||+||+|+|| |+|..++++++++.||++|+||++++| +|+|++++++++++.+.... .+.+++||++|++++++
T Consensus 631 lLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aa 710 (831)
T 4a0g_A 631 PVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCAT 710 (831)
T ss_dssp CEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHH
T ss_pred eEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHH
Confidence 99999999999 999999999999999999999999988 79999999999999887532 35688999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHH----HHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 251 GIHTLKRLKEPGTYEYLNKITGELTQ----GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
++++++.++++++.+++.++.+++++ .+.+.+.+.+....+.+.|.++++++...... ..++.....++.+
T Consensus 711 ala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~ 785 (831)
T 4a0g_A 711 AAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLI 785 (831)
T ss_dssp HHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHH
Confidence 99999999877777776665555543 44444556677778999999999998642110 0112344678999
Q ss_pred HHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHHhhC
Q 017633 327 GMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 327 ~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.|+++||++.+.+. .++ +++.++++|+++++++|+++++++
T Consensus 786 ~l~e~Gv~v~p~g~-~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 786 MLREDGIFTRPLGN-VIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHTTEECCCBTT-EEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCCcEEEecCC-EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999864 333 568889999999999999998753
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=315.96 Aligned_cols=352 Identities=21% Similarity=0.265 Sum_probs=269.9
Q ss_pred eccCCCcHHHHHHHHHHHHcCC--CC-CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------C
Q 017633 5 IILFPSYLQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------G 74 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~--~~-~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------~ 74 (368)
+++||.+|++++++.+++.+.. .+ +++.+...++++.++++++ +.+++++++||++|++.++++++.+. +
T Consensus 62 ~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~ 141 (449)
T 3a8u_X 62 CGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQAT 141 (449)
T ss_dssp CTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6789999999999999987642 22 5677888999999999997 77899999999999999998876543 6
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccccCC--CC--------HHHHHHHHHcCC-CCeE
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPF--ND--------VSALENLFENNK-GEIA 142 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~d--------~~~le~~~~~~~-~~~~ 142 (368)
+++||+++++||+.....+...+.+.....+. ...++...........++ -| +++|+++++++. ++++
T Consensus 142 ~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 221 (449)
T 3a8u_X 142 KTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIA 221 (449)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 78999999999999877776655322111110 000100000000000000 04 899999997532 4789
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeee
Q 017633 143 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYG 220 (368)
Q Consensus 143 ~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~ 220 (368)
+++++|+++++|.+.++++++++|+++|++||++||+||+|++| +.|..+..+.+++.||++|+||++++| +|+|+++
T Consensus 222 ~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~ 301 (449)
T 3a8u_X 222 AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVI 301 (449)
T ss_dssp EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEE
T ss_pred EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEE
Confidence 99999998888988999999999999999999999999999988 777666677888889999999999988 9999999
Q ss_pred ehHHHHHHhcCC------CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 221 GRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 221 ~~~~~~~~~~~~------~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
+++++++.+... ....+.+|+++|+++++++.++++.+.++++.++++++.++++++|++ +...+....+.+.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~ 380 (449)
T 3a8u_X 302 ASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG-IKGAKNVIDIRNF 380 (449)
T ss_dssp EEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT-TTTSTTEEEEEEE
T ss_pred ECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HhcCCCeEEEeee
Confidence 999998887643 122456788999999999999999887778899999999999999987 3334444445677
Q ss_pred cceEEEEeecCCCcccchhcccccH--HHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETT--KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.++++.+.... ... +..++.+.|+++||.+.+++ ..+|+ ++.++++++++++++|+++++++
T Consensus 381 g~~~~i~~~~~~----------~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 381 GLAGAIQIAPRD----------GDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TTEEEEEECCBT----------TBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEecCc----------ccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 889898874311 001 23468999999999999876 45555 47899999999999999998753
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=308.94 Aligned_cols=339 Identities=24% Similarity=0.305 Sum_probs=279.1
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh------cCC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGR 75 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~------~~~ 75 (368)
.+++||++|++++++.+++.+... .+++.+...+++++++++++ .+++++++||++|++.++++++.+ +++
T Consensus 50 ~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~ 128 (406)
T 4adb_A 50 VNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF-ADRVFFCNSGAEANEAALKLARKFAHDRYGSHK 128 (406)
T ss_dssp TCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS-CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC-CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 378999999999999999877432 34567889999999999985 459999999999999999887654 566
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+.|++.+++||+.........+.......+. ....++..++++|+++|+++++ +++++++++|+++++|.
T Consensus 129 ~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~p~np~g~~ 198 (406)
T 4adb_A 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA-------PLPADIRHAAYNDINSASALID---DSTCAVIVEPIQGEGGV 198 (406)
T ss_dssp CEEEEETTCCCCSSHHHHHHSSCGGGTGGGC-------SCCSSEEEECTTCHHHHHTTCS---TTEEEEEECSEETTTTS
T ss_pred cEEEEECCCcCCCcHHHhhccCCccccccCC-------CCCCCceEeCCCcHHHHHHHhc---CCeEEEEEeCCcCCCCC
Confidence 8999999999999888888777644322221 1123456677779999999887 57999999999888887
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+.++.+++++|+++|++||++||+||+|++| +.|..+..+.++..+|+++|||++++|+|+||+++++++++.+..
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~--- 275 (406)
T 4adb_A 199 VPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTV--- 275 (406)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCT---
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhcc---
Confidence 7778888999999999999999999999998 777766777888899999999999999999999999999888873
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
..+..+++.++++++++.++++.+..+++.++++++++++++.|+++...........+.+.++++.+....
T Consensus 276 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------- 347 (406)
T 4adb_A 276 GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADY-------- 347 (406)
T ss_dssp TSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTT--------
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCc--------
Confidence 345678899999999999999988667788899999999999999876655555566677888888874310
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+++||.+.+++...+|+ ++.++++++++++++|++++++
T Consensus 348 ---~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 348 ---AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp ---TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1135789999999999999987666665 7888999999999999998864
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=310.63 Aligned_cols=342 Identities=24% Similarity=0.310 Sum_probs=263.3
Q ss_pred eccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-----CC
Q 017633 5 IILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-----GR 75 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~-----~~ 75 (368)
+++||.+|++++++.+++++... .+++.+...++++.++++++ +.+++++++||++|++.++++++.+. ++
T Consensus 55 ~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~ 134 (429)
T 1s0a_A 55 AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEAR 134 (429)
T ss_dssp CTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCC
Confidence 68899999999999999876432 14466778999999999998 78999999999999999998765433 37
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCc-cccCC-CCCCCCCCCCCCcccccC---------CCCHHHHHHHHHcCCCCeEEE
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP---------FNDVSALENLFENNKGEIAAI 144 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~---------~~d~~~le~~~~~~~~~~~~~ 144 (368)
++||+++++||++....+...+... ....+ +...+ ...+.++ ..|+++|++++++++++++++
T Consensus 135 ~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 208 (429)
T 1s0a_A 135 QRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE------NLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp CEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCC------CEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred CeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCC------ceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence 8999999999998776666544211 00000 00000 0111111 137899999998644578999
Q ss_pred EEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeee
Q 017633 145 ILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGG 221 (368)
Q Consensus 145 ~~~~~-~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~ 221 (368)
+++|+ ++++|.+.++++++++|+++|++||++||+||+|++| +.|..+..+.++..||++++||++++| +|+||+++
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~ 288 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLT 288 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEE
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEe
Confidence 99999 8888988888899999999999999999999999998 766656667778889999999999999 99999999
Q ss_pred hHHHHHHhcCC--CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 222 RRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 222 ~~~~~~~~~~~--~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
++++++.+... +...+.+|+++|+++++++.++++.+.++++.+++++++++++++|+++.. .+....+.+.+.+++
T Consensus 289 ~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~ 367 (429)
T 1s0a_A 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGV 367 (429)
T ss_dssp CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTEEEEEEETTEEE
T ss_pred CHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEeeEEEE
Confidence 99988887642 112355788999999999999999887777788888888888888876432 333333556677888
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.. ..+..++.+.|+++||.+.+.+ ..+|+ ++.++++|+++++++|++++++
T Consensus 368 ~~~~~-------------~~~~~~l~~~l~~~Gi~v~~~~-~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 368 VETTH-------------PVNMAALQKFFVEQGVWIRPFG-KLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp EEESS-------------CBCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEECC-------------cccHHHHHHHHHHCCCEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 87632 1124678899999999999864 34554 4788999999999999998754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=302.53 Aligned_cols=330 Identities=24% Similarity=0.306 Sum_probs=269.1
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--------cC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TG 74 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--------~~ 74 (368)
+++||.+|++++++.+++...... .++.+...++++++++.++ .+++++++||++|++.++++++.. ++
T Consensus 48 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~ 126 (392)
T 3ruy_A 48 VNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN-KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEAN 126 (392)
T ss_dssp CTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred hccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCC
Confidence 468999999999999998774332 2457788999999999986 789999999999999999887665 45
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
++.|++..++||+....+....+.......+. ....++..++++|+++++++++ +++++++++++++++|
T Consensus 127 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG 196 (392)
T 3ruy_A 127 RAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFG-------PMLPGIIVIPYGDLEALKAAIT---PNTAAFILEPIQGEAG 196 (392)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCSCTTTTTTCC-------SCCSSEEEECTTCHHHHHHHCC---TTEEEEEECSSBSTTT
T ss_pred CcEEEEEcCCcCCCCHhhhhccCChhhccccC-------CCCCCCeeeCcccHHHHHHHhc---cCeEEEEEeCccCCCC
Confidence 77999999999999888877766533221111 1112345667779999999997 5799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~ 232 (368)
.+.++++++++|+++|++||++||+||+|++| +.|..+..+.++..+|+++|||+++|| +|+||+++++++++.+..
T Consensus 197 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~- 275 (392)
T 3ruy_A 197 INIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP- 275 (392)
T ss_dssp SBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCT-
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhcc-
Confidence 99999999999999999999999999999988 777777777888899999999999988 999999999988887763
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
..+..+++.++++++++.++++.+..+++.++++++++++++.|+++. .+......+.+.++++.+..
T Consensus 276 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~g~~~~~~~~~-------- 343 (392)
T 3ruy_A 276 --GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID--NPMITEVRGKGLFIGIELNE-------- 343 (392)
T ss_dssp --TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC--CTTEEEEEEETTEEEEEESS--------
T ss_pred --CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc--CCCceEEEeeeeEEEEEEcc--------
Confidence 346678899999999999999987667788888888888888887642 13334555667888877631
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
+..++.+.|+++||.+.+++...+|+ ++..+++++++++++|++++
T Consensus 344 -------~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 344 -------PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp -------CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 23688999999999999987666665 47889999999999999886
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=305.34 Aligned_cols=330 Identities=25% Similarity=0.343 Sum_probs=253.2
Q ss_pred eccCCC-cHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 5 IILFPS-YLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 5 ~~~g~~-~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
+++||. +|++++++.+++.+...+ .++++...++++.++++++ + .+++++++||++|++.++++++.++ +++|
T Consensus 54 ~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~v 132 (419)
T 2eo5_A 54 NNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYI 132 (419)
T ss_dssp TTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEE
T ss_pred hccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcE
Confidence 579998 999999999998765332 2667888999999999998 4 6899999999999999998876544 7899
Q ss_pred EEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCC---------------------CHHHHH-HHHH
Q 017633 79 IKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN---------------------DVSALE-NLFE 135 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~~~ 135 (368)
|+++++||+.....+...+.. .....+... ...+..++.+ |+++|+ ++++
T Consensus 133 i~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~ 205 (419)
T 2eo5_A 133 IAFLGGFHGRTFGSISLTASKAVQRSIVGPF-------MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFV 205 (419)
T ss_dssp EEETTCCCCSSHHHHHHCCSCGGGGCSSCCC-------CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHH
T ss_pred EEECCCcCCCCHhhHhhcCCccccccccCCC-------CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHh
Confidence 999999999988777765542 111111000 0011111111 477888 8887
Q ss_pred cCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccC
Q 017633 136 NNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 212 (368)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~ 212 (368)
++. +++++++++|+++++|.+.++++++++|+++|++||++||+||+|++| +.|..+..+.++..||++||||++++
T Consensus 206 ~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~ 285 (419)
T 2eo5_A 206 NLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGG 285 (419)
T ss_dssp HTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred hccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccC
Confidence 421 368899999998888888888999999999999999999999999999 77766666778889999999999999
Q ss_pred C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 017633 213 G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291 (368)
Q Consensus 213 G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 291 (368)
| +|+||++++++++ .+ . ..+.+|++.|+++++++.++++.+.+ +.++++++++++++.|.++ ...+
T Consensus 286 G~~riG~~~~~~~~~-~~-~---~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~ 352 (419)
T 2eo5_A 286 GIMPIGATIFRKDLD-FK-P---GMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDV 352 (419)
T ss_dssp TTSCCEEEEEEGGGC-CC----------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEE
T ss_pred CccceEEEEEchHhh-cC-C---cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhhe
Confidence 9 9999999988876 55 2 23557889999999999999987653 7777888888877777553 2245
Q ss_pred eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 292 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.+.+.++++++.. ...... +++.|+++||.+++++...+|+ ++.++++++++++++|+++++++
T Consensus 353 ~~~g~~~~i~~~~------------~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 353 RGIGLAWGLEYNE------------KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp EEETTEEEEECSC------------HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeEEEEEEEec------------CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6678888887621 112345 8899999999999976555555 66889999999999999998753
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=298.46 Aligned_cols=348 Identities=27% Similarity=0.386 Sum_probs=266.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCCC-C-CeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 5 IILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~-~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
+++||.+|++++++.+++..... .+++.+...+|++.+++++++ . +++++++||++|++.++++++.+.+++.|+
T Consensus 53 ~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi 132 (426)
T 1sff_A 53 LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTI 132 (426)
T ss_dssp CTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEE
Confidence 37899999999999999876322 235678899999999999943 4 899999999999999998654444555899
Q ss_pred EEcCCCCCCchhhhhhcCCCc-cccCCCCCCCCCCCCCCcccccCC-----C-----CHHHHHHHHHc--CCCCeEEEEE
Q 017633 80 KFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF-----N-----DVSALENLFEN--NKGEIAAIIL 146 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~-----d~~~le~~~~~--~~~~~~~~~~ 146 (368)
+.+++||+.....+...+... ....+.. ....+..++. + |+++|++++++ ++++++++++
T Consensus 133 ~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~ 205 (426)
T 1sff_A 133 AFSGAYHGRTHYTLALTGKVNPYSAGMGL-------MPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205 (426)
T ss_dssp EETTCCCCSSHHHHHHSSCCTTTTTTSCC-------CCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred EECCCcCCCchHhhhhcCCccccccccCC-------CCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEE
Confidence 999999998876666655421 0000000 0001111121 1 68899999874 1247889999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHH
Q 017633 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 147 ~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~ 225 (368)
+|+++++|...++++++++|+++|++||++||+||+|++| +.|..+..+.++..+|+.||||++++|+|+||+++++++
T Consensus 206 ~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~ 285 (426)
T 1sff_A 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEV 285 (426)
T ss_dssp CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHH
T ss_pred ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHH
Confidence 9998888878999999999999999999999999999998 767666667778889999999999999999999999988
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
++.+.. ..+..+++.|+++++++.++++.+.++++.+++++++++++++|.++....+......+.+.++|+.+...
T Consensus 286 ~~~l~~---~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 362 (426)
T 1sff_A 286 MDAVAP---GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFED 362 (426)
T ss_dssp HTTSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGG
T ss_pred Hhhhcc---CCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecC
Confidence 887763 23557888999999999999998877788999999999999999887544554334455688889887431
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCC--CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. ...+...+..++++.|+++||.+.+++ ...+|+ ++.++++++++++++|++++.+
T Consensus 363 ~~-----~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 363 GD-----HNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp GC-----TTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cc-----ccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 10 000123456789999999999999876 334555 4578999999999999998864
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=304.25 Aligned_cols=341 Identities=18% Similarity=0.243 Sum_probs=256.5
Q ss_pred eeccCCCcHHHHHHHHHHHHc-----CCCCCC--CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh---
Q 017633 4 LIILFPSYLQVLAALGETMKK-----GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--- 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~-----~~~~~~--~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--- 72 (368)
.+++||++|+|++++.+++.. ...++. ..++..++++.+++.++ +.++++|++||++|++.|+++++.+
T Consensus 74 ~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~ 153 (472)
T 1ohv_A 74 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRS 153 (472)
T ss_dssp TCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhh
Confidence 357999999999999987643 122221 24566666666777776 6789999999999999999988643
Q ss_pred ---------------------cC--CceEEEEcCCCCCCchhhhhhcCCCccc-cCCCCCCCCCCCCCCccccc------
Q 017633 73 ---------------------TG--RERIIKFEGCYHGHADPFLVKAGSGVAT-LGLPDSPGVPKGATYETLTA------ 122 (368)
Q Consensus 73 ---------------------~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 122 (368)
++ +++||+++++|||++..++..++.+... ...+.. .+... ..+....
T Consensus 154 ~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~-~~~~~-~~p~~~~~~~~~~ 231 (472)
T 1ohv_A 154 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF-DWPIA-PFPRLKYPLEEFV 231 (472)
T ss_dssp HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC-CCCEE-CCCCCCSSGGGCH
T ss_pred hccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC-CCccc-CCCcccCcccccc
Confidence 12 4899999999999999888887654221 111110 00000 0000111
Q ss_pred CCC------CHHHHHHHHHcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc
Q 017633 123 PFN------DVSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192 (368)
Q Consensus 123 ~~~------d~~~le~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~ 192 (368)
+++ |+++|+++++.+.+ ++++++++|+++++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+
T Consensus 232 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~ 311 (472)
T 1ohv_A 232 KENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFW 311 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred ccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCch
Confidence 111 58899999985212 78999999999999999999999999999999999999999999998 777767
Q ss_pred cccccCCC--cchhhhhhh-ccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHH
Q 017633 193 AQEYFGVT--PDLTTLGKI-IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 269 (368)
Q Consensus 193 ~~~~~~~~--~di~s~sK~-~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 269 (368)
.++.+++. ||+.||||+ ++|| +++ ++++ .......+++|+++|+++++++.++++.+.++++.+++++
T Consensus 312 ~~~~~gv~~~~Di~t~sK~~l~GG----~~~-~~~~----~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 382 (472)
T 1ohv_A 312 AHEHWGLDDPADVMTFSKKMMTGG----FFH-KEEF----RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAH 382 (472)
T ss_dssp GGGGGCCSSCCSEEEECGGGSSEE----EEE-CGGG----SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hccccCCCCCCCEEEEccccccCC----ccC-chhh----cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 78888886 999999999 6654 434 4443 1122455678899999999999999998877889999999
Q ss_pred HHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cc
Q 017633 270 ITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TS 346 (368)
Q Consensus 270 ~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~ 346 (368)
++++++++|+++...++ ....+.+.+.++++++. ......++++.|+++||.+.+++...+| ++
T Consensus 383 ~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~-------------~~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~ 449 (472)
T 1ohv_A 383 AGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-------------DESIRNKLISIARNKGVMLGGCGDKSIRFRPT 449 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-------------SHHHHHHHHHHHHHTTEECEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC-------------ChhHHHHHHHHHHHCCeEEecCCCCEEEEECC
Confidence 99999999998755554 24456677888888652 2234578999999999999987655555 47
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC
Q 017633 347 LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.++++|+++++++|++++.++
T Consensus 450 ~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 450 LVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=291.68 Aligned_cols=335 Identities=26% Similarity=0.323 Sum_probs=261.9
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh-----cCCce
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRER 77 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~-----~~~~~ 77 (368)
+++|+.+|++++++.+++...... .++.+...+++++++++++ .+++++++||++|++.++++++.+ +++++
T Consensus 52 ~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~ 130 (397)
T 2ord_A 52 NVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF-GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYR 130 (397)
T ss_dssp CTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT-SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred cccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC-CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCce
Confidence 688999999999999998774221 2456788999999999985 689999999999999999877543 35678
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
|++++++||+.....+...+.+.....+ |.. ..+..++++|+++|++.++ ++++++++++.++++|.+
T Consensus 131 vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~--------~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~ 199 (397)
T 2ord_A 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLV--------PGFEYFEFNNVEDLRRKMS---EDVCAVFLEPIQGESGIV 199 (397)
T ss_dssp EEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCC--------TTEEEECTTCHHHHHHHCC---TTEEEEEECSEECTTTCE
T ss_pred EEEEcCCcCCCchhhhhccCChhhccccCCCC--------CCeeEecCCCHHHHHHHhh---cCeEEEEEecccCCCCcc
Confidence 9999999999887666655543111111 111 1245566679999999987 478999999988888885
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
.++.+++++|+++|++||++||+||+|+++ +.|.......++..+|++||||++++|+|+||++++++++ .+.. .
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~---~ 275 (397)
T 2ord_A 200 PATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEP---G 275 (397)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCT---T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCC---C
Confidence 666777999999999999999999999988 6665555566777789999999999999999999988765 5442 2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
.+..+++.++++++++.++++.+.++++.++++++++++++.|++.....+......+.+.++++.+..
T Consensus 276 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~----------- 344 (397)
T 2ord_A 276 DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFRE----------- 344 (397)
T ss_dssp SSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECT-----------
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECC-----------
Confidence 355678899999999999999887777889999999999999988643444333445667888887632
Q ss_pred cccHHHHHHHHHHHHcCeeecCCCCCccccc--cCCCHHHHHHHHHHHHHHHhhC
Q 017633 316 SETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 316 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..+..++.+.|+++||.+.+++...+|++ +..+++++++++++|+++++++
T Consensus 345 --~~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 397 (397)
T 2ord_A 345 --EVSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397 (397)
T ss_dssp --TSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhhC
Confidence 11247889999999999999865555654 6789999999999999998763
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=286.92 Aligned_cols=330 Identities=29% Similarity=0.370 Sum_probs=258.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 5 IILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+++|+.+|++++++.+++...... .++.+...+++++++++++ +.+++++++||++|+..+++.++.+.++++||++
T Consensus 57 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~ 136 (395)
T 1vef_A 57 ANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAA 136 (395)
T ss_dssp CTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred ccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 678999999999999998764321 2467889999999999997 6789999999999999999876544567889999
Q ss_pred cCCCCCCchhhhhhcCCCccccC-CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
+++||+.....+...+....... .+. ..++..+++.|+++++++++ +++++++++|+++++|.+.+++
T Consensus 137 ~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~ 205 (395)
T 1vef_A 137 MRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATP 205 (395)
T ss_dssp TTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCH
T ss_pred cCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHHHHHHHhc---cCEEEEEEeCccCCCCccCCCH
Confidence 99999987766665544321100 111 11234445568999999997 4789999999988889888899
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
+++++|+++|++||++||+||+|+++ +.|..+..+.++..+|++||||++++|+|+||+++++++++.+.. ..+..
T Consensus 206 ~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~---~~~~~ 282 (395)
T 1vef_A 206 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPK---GGHGT 282 (395)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCT---TSSCC
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhcc---CCcCC
Confidence 99999999999999999999999988 556555556677788999999999999999999998888887764 22456
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
+++.++++++++.++++.+.++++.++++++++++++.|+++.. +......+.+.++++.+.. .
T Consensus 283 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~g~~~~~~~~~-------------~- 346 (395)
T 1vef_A 283 TFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PKIREVRGMGLMVGLELKE-------------K- 346 (395)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TTEEEEEEETTEEEEEESS-------------C-
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--CceEEEEEEEEEEEEEEcC-------------h-
Confidence 77889999999999998876566778888888888888766421 2222345567788887631 1
Q ss_pred HHHHHHHHHH-HcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 320 KFARFYRGML-EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 320 ~~~~~~~~l~-~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
..++.+.|+ ++||.+.+++...+|+ ++..+++++++++++|++++
T Consensus 347 -~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 347 -AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp -SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 367899999 9999999976556665 55789999999999999876
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=272.80 Aligned_cols=326 Identities=26% Similarity=0.343 Sum_probs=250.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCC--CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh----c-CCce
Q 017633 5 IILFPSYLQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF----T-GRER 77 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~----~-~~~~ 77 (368)
+++||.+|++++++.+++.+.. ...++.+...+++++++++++-++++++++||++|+..++++++.+ . ++++
T Consensus 40 ~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~ 119 (375)
T 2eh6_A 40 NSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWK 119 (375)
T ss_dssp CTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred cccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCE
Confidence 5788899999999999887631 1234667789999999999863389999999999999999765333 2 3489
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++.+++||++...+....+.......+... ..++..+++.|+++|+++++ +++++++++|+++++|.+.
T Consensus 120 vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~ 189 (375)
T 2eh6_A 120 FISFENSFHGRTYGSLSATGQPKFHKGFEPL-------VPGFSYAKLNDIDSVYKLLD---EETAGIIIEVIQGEGGVNE 189 (375)
T ss_dssp EEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC-------CSSEEEECTTCHHHHHTTCC---TTEEEEEECSEETTTTSEE
T ss_pred EEEECCCcCCCchhhhhhcCCccccCCCCCC-------CCCceeCCCchHHHHHHHhc---CCeEEEEEeCccCCCCCcC
Confidence 9999999999988777665553211111000 11244455568999998887 4789999999888889888
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
++++++++|+++|++||+++|+||+|++| +.+..+..+.++..+|+++|||.+++|+|+||+++++++++.+.. ..
T Consensus 190 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~---~~ 266 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTP---GS 266 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCT---TS
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcC---CC
Confidence 98999999999999999999999999988 555444556677778999999999999999999999888877763 22
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
+..++++++++++++.++++.+. ++.++++++++++++.|+++ +. ....+.+.++++.+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~g~~~~~~~~~------------ 327 (375)
T 2eh6_A 267 HGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL----GK-GKVKGRGLMLGLELER------------ 327 (375)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT----TS-SEEEEETTEEEEECSS------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hc-CCceEEEEEEEEEEcC------------
Confidence 45677889999999988888764 56677777777777777663 22 2345667888887631
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCCCccccc--cCCCHHHHHHHHHHHHHHH
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~l 365 (368)
+..++++.|+++||.+.+++...+|++ ...+++++++++++|++++
T Consensus 328 ---~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 328 ---ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp ---CCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred ---cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 136788999999999998765556654 5789999999999998764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=251.60 Aligned_cols=343 Identities=13% Similarity=0.037 Sum_probs=226.9
Q ss_pred ccCCCcHHHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhc
Q 017633 6 ILFPSYLQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++ .+|++++++.+++... ..|+ ......++++.+++++ + +.+ ++++++||++|++.+++.+ ..
T Consensus 48 ~~~-~~~~v~~a~~~~~~~~~~~~~~y~-~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--~~ 123 (429)
T 1yiz_A 48 DYH-APKYALNALAAAANSPDPLANQYT-RGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH--VD 123 (429)
T ss_dssp SSC-CCHHHHHHHHHHHTCSCGGGGSCC-CSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH--CC
T ss_pred CCC-CCHHHHHHHHHHHhccccCccCCC-CCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh--cC
Confidence 345 5789999999988752 2222 2223455666666553 3 467 9999999999999999876 34
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-CCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+++.|++..++||+..... ...|..+...+....... .......+ .|++++++.++ ++++++++++.+++
T Consensus 124 ~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~np 194 (429)
T 1yiz_A 124 EGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKTG-----GTISSADWVLDNNELEALFN---EKTKMIIINTPHNP 194 (429)
T ss_dssp TTCEEEEEESCCTTHHHHH-HHTTCEEEEEECBCCCSS-----SSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred CCCEEEEcCCCchhHHHHH-HHcCCEEEEEeCCccccc-----ccccccCcccCHHHHHHHhc---cCceEEEECCCCCC
Confidence 5789999999999865443 333433322211111000 00000011 28999999886 46788877776666
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-Ccccc----ccCCCcchhhhhhhcc-CCccceeeeehHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQE----YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 225 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~----~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~ 225 (368)
+|.+. +++++++|+++|++||+++|+||+|+++ +.|. ...+. ..+..+++.|+||.++ +|+|+||+++++++
T Consensus 195 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~ 273 (429)
T 1yiz_A 195 LGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEAL 273 (429)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHH
T ss_pred CCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHH
Confidence 77665 5666999999999999999999999987 5443 11221 2334556779999999 79999999999998
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHH-----HccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
++.+.. .....+++.++++++++.++++. ...+++.++.+++.+..++.+.+.+.+.+.....+..+.++|+
T Consensus 274 ~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~ 350 (429)
T 1yiz_A 274 LKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVA 350 (429)
T ss_dssp HHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEE
T ss_pred HHHHHH---HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEE
Confidence 887762 23446778899999999888886 3225555665555555555665555444554333445667888
Q ss_pred EeecCCCcc-cchhcccccHHHHHHHHHHH-HcCeeecCCC-----------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYN-FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+....... +.. .....+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 351 ~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 351 DWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp ECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred Ecccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence 774310000 000 000124567888887 7899998863 2345677677999999999999998764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=251.04 Aligned_cols=328 Identities=12% Similarity=0.036 Sum_probs=222.4
Q ss_pred cCCCcHHHHHHHHHHHHcCCC-CC-CCChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 7 LFPSYLQVLAALGETMKKGTS-FG-APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..+.+|++++++.+++..... |. ...+...++++++++.++ +.+++++++||++|++.+++.+ ..+++.|++.
T Consensus 72 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~ 149 (421)
T 3l8a_A 72 DFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF--SEKGDAVLIN 149 (421)
T ss_dssp CSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEC
Confidence 334789999999999876322 21 234567777777777665 5789999999999999999877 3467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++||+........ +..+...++....+ .+. .|+++|++++++ +++++++++++++++|. ..+++
T Consensus 150 ~~~y~~~~~~~~~~-g~~~~~~~~~~~~~--------~~~---~d~~~le~~i~~--~~~~~vil~~p~nptG~-~~~~~ 214 (421)
T 3l8a_A 150 SPVYYPFARTIRLN-DHRLVENSLQIING--------RFE---IDFEQLEKDIID--NNVKIYLLCSPHNPGGR-VWDND 214 (421)
T ss_dssp ESCCHHHHHHHHHT-TEEEEEEECEEETT--------EEE---CCHHHHHHHHHH--TTEEEEEEESSBTTTTB-CCCHH
T ss_pred CCCcHHHHHHHHHC-CCEEEeccccccCC--------Cee---eCHHHHHHHhhc--cCCeEEEECCCCCCCCC-cCCHH
Confidence 99999865544433 33222111110000 000 189999999974 36888888888777785 44555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc-----cccCCCcchhhhhhhcc-CCccceeeeeh-HHHHHHhcCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-----EYFGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPA 232 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~-----~~~~~~~di~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~ 232 (368)
++++|+++|++||++||+||+|+++ +.|.. ..+ +..+..+++.|+||+++ +|+|+|+++++ +++++.+...
T Consensus 215 ~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~ 294 (421)
T 3l8a_A 215 DLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYR 294 (421)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHH
Confidence 5999999999999999999999988 65532 111 12344566889999998 89999999887 8888877631
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-eEEEEeecCCCcccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFE 311 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 311 (368)
.....++++|+++++++.++++.. +++.+++.+..+..++.+.+.+.+.+......+.+. +.|+++...
T Consensus 295 --~~~~~~~~~n~~~~~a~~aal~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~------ 364 (421)
T 3l8a_A 295 --QLANNQHEVPTVGMIATQAAFQYG--KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY------ 364 (421)
T ss_dssp --HHHTTCSCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG------
T ss_pred --HHhcccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc------
Confidence 112344578999999999998743 334444444444444444444443332233444444 445666321
Q ss_pred hhcccccHHHHHHHHHHHH-cCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|++ +||.+.++. ...+|+++.++++++++++++|++++++
T Consensus 365 ------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 421 (421)
T 3l8a_A 365 ------AIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFGK 421 (421)
T ss_dssp ------TCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred ------CCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC
Confidence 1123678888975 599998853 2446777778999999999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=252.02 Aligned_cols=322 Identities=14% Similarity=0.115 Sum_probs=216.0
Q ss_pred CCcHHHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhC----C--CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 9 PSYLQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAV----P--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~----~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
+.++++.+++.+++.+. ..| .+.....+|++++++++ + +.+++++|+||++|+..+++.+ ..++|.|
T Consensus 91 ~p~~~v~~a~~~~l~~~~~~~~~Y-~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l--~~~Gd~V 167 (448)
T 3aow_A 91 FPKEIIRDILVEIMEKYADKALQY-GTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVF--LNPGDIV 167 (448)
T ss_dssp SCHHHHHHHHHHHHHHSHHHHHSC-CCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHHHHhhhHHHhCC-CCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHH--cCCCCEE
Confidence 35668999998888653 123 23344567777777766 5 4689999999999999999877 3467899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHH----cCCCCeEEEEEcccCCC-C
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGN-S 153 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~----~~~~~~~~~~~~~~~~~-~ 153 (368)
++..++|++....+.. .|..+...+... .+ .|+++|+++++ +. .+++++++.|+.+| +
T Consensus 168 lv~~p~y~~~~~~~~~-~g~~~~~v~~~~-~g--------------~d~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPt 230 (448)
T 3aow_A 168 VVEAPTYLAALQAFNF-YEPQYIQIPLDD-EG--------------MKVEILEEKLKELKSQG-KKVKVVYTVPTFQNPA 230 (448)
T ss_dssp EEEESCCHHHHHHHHT-TCCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTT
T ss_pred EEeCCChHHHHHHHHH-cCCEEEEeccCC-CC--------------CCHHHHHHHHhhhhccC-CCCeEEEECCCCCCCc
Confidence 9999999886544332 233222111110 11 18999999997 42 36788766666555 4
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC----ccccccCCCcchhhhhhhccCCccceeeeehHHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~----~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
|. ..+.+++++|+++|++||+++|+||+|.++ +.|.. ...+..+..+++.||||.+++|+|+||+++++++++.
T Consensus 231 G~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~ 309 (448)
T 3aow_A 231 GV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRK 309 (448)
T ss_dssp CC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHH
Confidence 54 456677999999999999999999999887 54431 1222234456778999999999999999999999888
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc---CCceEEeeccceEEEEeecC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA---GHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 305 (368)
+.. .....+++.|++++.++.++++...-+++.+++++..+..++.+.+.+.+. +.....+..+.++|+.+..
T Consensus 310 l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~- 385 (448)
T 3aow_A 310 MEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPD- 385 (448)
T ss_dssp HHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECST-
T ss_pred HHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCC-
Confidence 763 234456677999999888887632001223333333333333343333332 2322233446677877631
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--------CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--------~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+++||.+.++.. ..+|+++.. +++++++++++|++++++
T Consensus 386 ------------~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 386 ------------GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp ------------TCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 12347899999999999998632 235665544 799999999999998864
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=248.68 Aligned_cols=341 Identities=12% Similarity=0.070 Sum_probs=220.5
Q ss_pred CcHHHHHHHHHHHHc-CCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKK-GTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|.+++++.+++.. ....+.+.....++++++++++ + +++++++|+||++|+..+++.+ ..+++.|++.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l--~~~gd~Vlv~ 148 (447)
T 3b46_A 71 PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGL--LNAGDEVIVF 148 (447)
T ss_dssp CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHH--cCCCCEEEEe
Confidence 468899999998875 2222223333455666666553 3 3478999999999999999876 3467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCC-CCCCCCCCcccccCC-CCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
.+.|++..... ...|..+...+..... +.. .......+ .|+++|+++++ ++++++++++.+|++|.+.+
T Consensus 149 ~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~----~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~- 219 (447)
T 3b46_A 149 EPFFDQYIPNI-ELCGGKVVYVPINPPKELDQ----RNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFT- 219 (447)
T ss_dssp ESCCTTHHHHH-HHTTCEEEEEEEECCGGGGT----SCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCC-
T ss_pred CCCchhHHHHH-HHcCCEEEEEeCCCcccccc----ccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccC-
Confidence 99998865443 3334333221111110 000 00000011 18999998886 46787777766666776654
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccc-----cccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-----EYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAP 231 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~-----~~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~ 231 (368)
.+++++|+++|++||+++|+||+|.++ +.+..... +.++..+.+.|+||.++ +|+|+||+++ ++++++.+..
T Consensus 220 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~ 299 (447)
T 3b46_A 220 REELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAK 299 (447)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHH
Confidence 566999999999999999999999987 54422111 12455666789999999 8999999999 9998887762
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc-c
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN-F 310 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 310 (368)
..+..+++.++++++++.++++....+++.++++++.+..++.+.+.+.+.++....+..+.++|+.+....... .
T Consensus 300 ---~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~ 376 (447)
T 3b46_A 300 ---AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDY 376 (447)
T ss_dssp ---HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTC
T ss_pred ---HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCcccc
Confidence 334467788999999988888865334444444444444444444444444544444555677787764210000 0
Q ss_pred c-hhcccccHHHHHHHHHHH-HcCeeecCCC-----------CCccccccCCCHHHHHHHHHHHHHH
Q 017633 311 E-DAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 311 ~-~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
. ........+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 377 PYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443 (447)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred ccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 0 000000124568888887 5799998873 2345777778999999999999873
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=241.66 Aligned_cols=312 Identities=13% Similarity=0.069 Sum_probs=222.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
.+|++++++.+++.....++++.....+++++++++++ ..+++++++||++++..+++.+ ..+++.|++..++|++
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~~ 121 (367)
T 3euc_A 44 LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA--ARPGAKVMAPVPGFVM 121 (367)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT--CCTTCEEEEEESCSCC
T ss_pred CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH--cCCCCEEEEcCCCHHH
Confidence 78899999999887532334455567899999999986 4579999999999999999866 3467899999999998
Q ss_pred CchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 88 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
........ |..+...+......+ |+++++++++++ +++++++++.++++|.+.+ .+.+++|+
T Consensus 122 ~~~~~~~~-g~~~~~v~~~~~~~~--------------d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-~~~l~~i~ 183 (367)
T 3euc_A 122 YAMSAQFA-GLEFVGVPLRADFTL--------------DRGAMLAAMAEH--QPAIVYLAYPNNPTGNLFD-AADMEAIV 183 (367)
T ss_dssp SCHHHHTT-TCEEEEEECCTTSCC--------------CHHHHHHHHHHH--CCSEEEEESSCTTTCCCCC-HHHHHHHH
T ss_pred HHHHHHHc-CCeEEEecCCCCCCC--------------CHHHHHHHhhcc--CCCEEEEcCCCCCCCCCCC-HHHHHHHH
Confidence 76554333 332222111111111 899999999853 5667776666666776665 44499999
Q ss_pred HHHHHh--CCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 168 RITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 168 ~l~~~~--~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
++|++| |+++|+||+|++| ..+.....+..+..+++.|+||...+|+|+||+++++++++.+.... .+++.+
T Consensus 184 ~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~-----~~~~~~ 258 (367)
T 3euc_A 184 RAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVR-----PPYNVN 258 (367)
T ss_dssp HHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGC-----CSSCCC
T ss_pred HhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHhC-----CCCCCC
Confidence 999999 9999999999887 33332333444455667899999337899999999999988887422 356789
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
+++++++.++++. .++.++..++.+..++.+.+.+.+.+.....+..+.++++.+. +..++
T Consensus 259 ~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~----------------~~~~l 319 (367)
T 3euc_A 259 VLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARVP----------------DAAQT 319 (367)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEECS----------------CHHHH
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC----------------CHHHH
Confidence 9999998888863 2334445555555555555555555322244556677776652 24778
Q ss_pred HHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 325 YRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.|.++||.++++.. ..+|+++. +++|+++++++|+++++
T Consensus 320 ~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 320 FDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 8999999999998753 34566655 89999999999999875
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=244.48 Aligned_cols=319 Identities=14% Similarity=0.092 Sum_probs=209.2
Q ss_pred CCcHHHHHHHHHHHHcC-CCCC-CCChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 9 PSYLQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~-~~~~-~~~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
..+|++++++.+++... ..|+ ...+..+.+++.+.+.++ +.+++++++||++|++.+++.+ ..+++.|++..+
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~ 113 (377)
T 3fdb_A 36 STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHF--TPAQSKVIVPTP 113 (377)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH--SCTTCCEEEEES
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHh--cCCCCEEEEcCC
Confidence 37899999999998763 2222 113444444444444332 4689999999999999999876 346788999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|++....+.. .|..+...+... . .|+++++++++. +++++++...++++|.+.+ .+.+
T Consensus 114 ~~~~~~~~~~~-~g~~~~~~~~~~--~--------------~d~~~l~~~l~~---~~~~v~i~~p~nptG~~~~-~~~l 172 (377)
T 3fdb_A 114 AYPPFFHLLSA-TQREGIFIDATG--G--------------INLHDVEKGFQA---GARSILLCNPYNPLGMVFA-PEWL 172 (377)
T ss_dssp CCTHHHHHHHH-HTCCEEEEECTT--S--------------CCHHHHHHHHHT---TCCEEEEESSBTTTTBCCC-HHHH
T ss_pred CcHhHHHHHHH-cCCEEEEccCCC--C--------------CCHHHHHHHhcc---CCCEEEEeCCCCCCCCCCC-HHHH
Confidence 99886544333 333332211111 1 189999999984 3445555444666676655 4449
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcc-c-Cccc---cccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLA-Y-GGAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPM 235 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g-~-~~~~---~~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~ 235 (368)
++|+++|++||+++|+||+|+++ +.+ . ...+ +..+..+++.|+||.++ +|+|+||+++ ++++++.+.. .
T Consensus 173 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---~ 249 (377)
T 3fdb_A 173 NELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ---L 249 (377)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHH---S
T ss_pred HHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHH---H
Confidence 99999999999999999999988 555 2 1111 11223355679999997 7999998765 7888887763 2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
....+++.++++++++.++++...+ +...++++++++++++.|++... +.....+..+.+.|+.+....
T Consensus 250 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~------- 320 (377)
T 3fdb_A 250 SPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIP--GAKITPMQATYLMWIDFRDTT------- 320 (377)
T ss_dssp CHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHST--TCEECCCSBCSEEEEECTTSC-------
T ss_pred HHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCC--CceEecCCeeEEEEEECcccC-------
Confidence 2445678899999998888874311 22334444555555555444211 332222233344466653210
Q ss_pred cccccHHHHHHHHHHHHc-CeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 314 KKSETTKFARFYRGMLEE-GVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~-Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
. ..++...|+++ ||.+.++.. ..+|+++..+++++++++++|+++++++
T Consensus 321 -----~-~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 321 -----I-EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp -----C-CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred -----C-CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 0 13567777766 999998642 3457777779999999999999998753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=243.27 Aligned_cols=324 Identities=15% Similarity=0.100 Sum_probs=212.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCe-EEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~-v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|++++++.+++.+....+.+.....++++.+++++ + +.++ +++++||++|+..+++.+ ..+++.|++.
T Consensus 40 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~ 117 (389)
T 1gd9_A 40 TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF--LKDGEEVLIP 117 (389)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT--CCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh--CCCCCEEEEc
Confidence 5789999999988764322222233456666666655 4 4678 999999999999999765 3467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|++....+ ...|..+...+.....++. -|++++++.++ ++++++++++.++++|.+. +.+
T Consensus 118 ~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~ 180 (389)
T 1gd9_A 118 TPAFVSYAPAV-ILAGGKPVEVPTYEEDEFR------------LNVDELKKYVT---DKTRALIINSPCNPTGAVL-TKK 180 (389)
T ss_dssp ESCCTTHHHHH-HHHTCEEEEEECCGGGTTC------------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHH
T ss_pred CCCchhHHHHH-HHCCCEEEEeccCCccCCC------------CCHHHHHHhcC---cCceEEEEECCCCCCCcCC-CHH
Confidence 99999865443 3334433221111100100 17999999987 3577777766556667655 555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-Ccccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+++|+++|++||+++|+||+|+++ ..+. ......+ +....+.|+||.++ +|+|+||+++++++++.+..
T Consensus 181 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~--- 257 (389)
T 1gd9_A 181 DLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVK--- 257 (389)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHH---
Confidence 6999999999999999999999887 5443 2222222 12223568999998 79999999999988887763
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....+++.+++++.++.++++....+.+.+++.++.+..++.+.+.+.+.+.....+..+.++|+.+..
T Consensus 258 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------- 327 (389)
T 1gd9_A 258 FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRD---------- 327 (389)
T ss_dssp HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCBCGG----------
T ss_pred HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEeccC----------
Confidence 2334566788999988888776332211333333334444444444333334332223334455555421
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 328 --~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 328 --TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp --GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 0123468899998 8999999863 2346777667999999999999998865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=242.39 Aligned_cols=319 Identities=15% Similarity=0.077 Sum_probs=216.5
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCC-hhHHHHHHHHHhhC----C-C--CC-eEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPC-LLENVLAEMVISAV----P-S--IE-MVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~-~--~~-~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++ .+|.+++++.+++.+...++++. ....++++.+++++ + + ++ ++++++||++++..+++.+ ..+++
T Consensus 36 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd 112 (376)
T 2dou_A 36 DLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL--TEPED 112 (376)
T ss_dssp CCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH--CCTTC
T ss_pred CCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh--cCCCC
Confidence 445 57899999999886532233444 46778888888876 5 2 34 8999999999999999876 34578
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++..++|++....+.. .|..+...+. ..++. .|++++++.++ +++++++++..++++|.+
T Consensus 113 ~vl~~~p~y~~~~~~~~~-~g~~~~~~~~--~~~~~------------~d~~~l~~~l~---~~~~~v~l~~p~nptG~~ 174 (376)
T 2dou_A 113 LLLLPEVAYPSYFGAARV-ASLRTFLIPL--REDGL------------ADLKAVPEGVW---REAKVLLLNYPNNPTGAV 174 (376)
T ss_dssp EEEEESSCCHHHHHHHHH-TTCEEEEECB--CTTSS------------BCGGGSCHHHH---HHEEEEEECSSCTTTCCC
T ss_pred EEEECCCCcHhHHHHHHH-cCCEEEEeeC--CCCCC------------CCHHHHHHhhc---cCceEEEECCCCCCcCcc
Confidence 999999999986554433 3333222111 11110 17888888886 367777776555556765
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-cccc---cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY---FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~~---~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~ 230 (368)
. +.+++++|+++|++||+++|+||+|+++ +.+... .... .+..+.+.|+||.++ +|+|+||+++++++++.+.
T Consensus 175 ~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 253 (376)
T 2dou_A 175 A-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLE 253 (376)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHH
Confidence 5 5666999999999999999999999988 544321 1222 233455679999998 8999999999999988876
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
. .....+++.++++++++.++++.. +++.++.++..+..++.+.+.+.+. .....+..+.++|+.+..
T Consensus 254 ~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~------ 321 (376)
T 2dou_A 254 R---VKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV-LSLLPPRATMYLWGRLPE------ 321 (376)
T ss_dssp H---HHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBSSEEEEECCT------
T ss_pred H---HHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCeeEEEEEECCC------
Confidence 3 233445677889988888777532 2344444444455555555544443 221122335567776631
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
..+..++.+.|+++||.+.++. ...+|+++..+++++++++++|++++
T Consensus 322 -------~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 322 -------GVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp -------TCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred -------CCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 1224678999999999998863 23456776679999999999998865
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=240.00 Aligned_cols=317 Identities=18% Similarity=0.153 Sum_probs=229.1
Q ss_pred eeccC-CCcHHHHHHHHHHHHc-CCCCC------CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 4 LIILF-PSYLQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 4 ~~~~g-~~~~~v~~a~~~~~~~-~~~~~------~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
.+++| +.+|++++++.+++.. ...++ .+.+...++++.++++++- +++++++||++|+..+++.+ ..++
T Consensus 72 ~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~-~~~i~~~sGs~a~~~al~~l--~~~g 148 (427)
T 2w8t_A 72 YNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGT-TGAIVFSTGYMANLGIISTL--AGKG 148 (427)
T ss_dssp CCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--SCTT
T ss_pred cccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCC-CceEEecCcHHHHHHHHHHh--cCCC
Confidence 34678 5899999999998876 32221 1457789999999999853 46777888999999988765 3456
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCC-CeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~-~~~~~~~~~~~~~~g 154 (368)
+.|++.. .+|+.....+...+. +++.++++|+++|++++++..+ ++++++++++++++|
T Consensus 149 d~vl~~~-~~h~~~~~~~~~~g~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG 208 (427)
T 2w8t_A 149 EYVILDA-DSHASIYDGCQQGNA-------------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLG 208 (427)
T ss_dssp CEEEEET-TCCHHHHHHHHHSCS-------------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTT
T ss_pred CEEEECC-cccHHHHHHHHHcCC-------------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCC
Confidence 6666655 455544444443332 2344455699999999986433 789999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc-cCccccccCCCcc----hhhhhhhccCCccceeeeehHHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g-~~~~~~~~~~~~d----i~s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
.+.+ +++|+++|++||++||+||+|+++ ... .......+++.++ +.||||+++ ++.||+++++++++.
T Consensus 209 ~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~ 282 (427)
T 2w8t_A 209 DIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEA 282 (427)
T ss_dssp EECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGG
T ss_pred CccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHH
Confidence 9888 999999999999999999999875 221 1223334555444 678999997 355999999888888
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccceEEEEeecCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGP 306 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 306 (368)
+......+ ..+.+.++++++++.++++.+.. +++.+++.++++++++.|++. ++...... .++++++.+.
T Consensus 283 l~~~~~~~-~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--- 354 (427)
T 2w8t_A 283 VRLACRPY-IFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLE--- 354 (427)
T ss_dssp GGGTCHHH-HSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEES---
T ss_pred HHHhcccc-cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEEC---
Confidence 87532211 23457788999888899988764 456778888888888888775 33222123 5677787762
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-------cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-------~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.....++++.|+++||.+.++..+ .+|+ +..++++++++++++|++++++
T Consensus 355 ----------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 355 ----------DQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp ----------SHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999886432 3454 3446999999999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=242.58 Aligned_cols=315 Identities=14% Similarity=0.114 Sum_probs=218.0
Q ss_pred HHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhh
Q 017633 16 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 93 (368)
Q Consensus 16 ~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 93 (368)
+++.+.+......+.+.....++++.+++++. +.+++++++||++|+..+++.+ ..++|.|++..++|++......
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~ 123 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDIPK 123 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHH
Confidence 34555555544334455667899999999873 6789999999999999999876 3567899999999988654433
Q ss_pred hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 94 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
..|..+...+.....++. -|+++++++++ ++++++++++.++++|.+. +.+++++|+++|++|
T Consensus 124 -~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~ 186 (375)
T 3op7_A 124 -SLGAEVDLWQIEEENGWL------------PDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEV 186 (375)
T ss_dssp -HTTCEEEEEEEEGGGTTE------------ECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTT
T ss_pred -HcCCEEEEEeccccCCCC------------CCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHc
Confidence 233322211111001100 08999999997 4677778877777777655 555699999999999
Q ss_pred CCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHH
Q 017633 174 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 251 (368)
Q Consensus 174 ~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 251 (368)
|+++|+||+|+++ +.+.....+.++..+++.||||.++ +|+|+||+++++++++.+.. .....+++.++++++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 263 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRD---YRDYTMICAGVFDDLVA 263 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTT---TGGGTTSCCCHHHHHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHH---HHhhhccCCCcHHHHHH
Confidence 9999999999887 4322233344566677889999999 89999999999999998874 33456677889999988
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCCCcccchhcccccHHHHHHHHHH-H
Q 017633 252 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-L 329 (368)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 329 (368)
..+++.. +.+.++.+++.+..++.+.+.+.+.+..... +..+.+.++.+.. ..+..++++.| .
T Consensus 264 ~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ll~ 328 (375)
T 3op7_A 264 QLALAHY--QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAV-------------DMPMEDFCLQLLQ 328 (375)
T ss_dssp HHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECC-------------SSCHHHHHHHHHH
T ss_pred HHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCC-------------CCCHHHHHHHHHH
Confidence 8887743 2334444444444455555544444322222 2334455655531 12246788887 4
Q ss_pred HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 330 EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 330 ~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 329 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 329 EHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred hCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 78999998753 456778888889999999999999865
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=238.37 Aligned_cols=318 Identities=16% Similarity=0.118 Sum_probs=214.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
.+|.+++++.+++......+.+.....++++.+++++ + +.+ ++++++||++++..+++.+ ..+++.|++.
T Consensus 44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~ 121 (386)
T 1u08_A 44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL--VRNGDEVICF 121 (386)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh--CCCCCEEEEe
Confidence 5789999999988763222222223456666666653 3 466 9999999999999999876 3467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|++.... +...|..+...+....... .|++++++.++ ++++++++++.++++|.+. +.+
T Consensus 122 ~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~ 183 (386)
T 1u08_A 122 DPSYDSYAPA-IALSGGIVKRMALQPPHFR-------------VDWQEFAALLS---ERTRLVILNTPHNPSATVW-QQA 183 (386)
T ss_dssp ESCCTTHHHH-HHHTTCEEEEEECCTTTCC-------------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHH
T ss_pred CCCchhHHHH-HHHcCCEEEEeecCcccCc-------------CCHHHHHHhhc---ccCEEEEEeCCCCCCCccC-CHH
Confidence 9999976543 3333433322111110111 18999999986 4677777776666677655 555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc---c-ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---E-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~---~-~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
++++|+++|++||+++|+||+|+++ +.|.. ... . ..+..+.+.|+||.++ +|+|+||+++++++++.+..
T Consensus 184 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~--- 260 (386)
T 1u08_A 184 DFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRK--- 260 (386)
T ss_dssp HHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHH---
Confidence 6999999999999999999999887 54431 111 1 2345556779999999 79999999999988887762
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.....+++.+++++.++.++++.. +++.++++++.+..++.+.+.+.+.+.....+..+.++|+.+...
T Consensus 261 ~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~--------- 329 (386)
T 1u08_A 261 VHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV--------- 329 (386)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTT---------
T ss_pred HHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEecCCC---------
Confidence 233456788899988888888754 334444555555555555555444444332233456777776311
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCC--------CCccccccCCCHHHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~--------~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
...+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++
T Consensus 330 --~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 330 --STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp --CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred --CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 0012467888887 6799998763 234567777799999999999864
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-31 Score=238.97 Aligned_cols=316 Identities=18% Similarity=0.149 Sum_probs=216.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.+++.+...| .......++++.++++++ +++++++++||++|++.+++.+ ..+++.|++..++|++.
T Consensus 39 ~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~Vl~~~~~~~~~ 115 (381)
T 1v2d_A 39 PPPFLLEAVRRALGRQDQY-APPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VGPGDEVVVLEPFFDVY 115 (381)
T ss_dssp CCHHHHHHHHHHTTTSCSC-CCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTH
T ss_pred CCHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCchhH
Confidence 6789999999988752222 233457899999999987 6678999999999999999877 35678999999999886
Q ss_pred chhhhhhcCCCccccCCC--CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
... ....|..+...+.. .... ..|++++++.++ ++++++++++.++++|.+.+ .+++++|
T Consensus 116 ~~~-~~~~g~~~~~v~~~~~~~~~-------------~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~-~~~l~~i 177 (381)
T 1v2d_A 116 LPD-AFLAGAKARLVRLDLTPEGF-------------RLDLSALEKALT---PRTRALLLNTPMNPTGLVFG-ERELEAI 177 (381)
T ss_dssp HHH-HHHTTCEEEEEECEEETTEE-------------ECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCC-HHHHHHH
T ss_pred HHH-HHHcCCEEEEEeCCCCCccC-------------CcCHHHHHHhcC---cCCEEEEECCCCCCCCCccC-HHHHHHH
Confidence 543 33334332221111 0000 017999998886 46788777766666776654 5669999
Q ss_pred HHHHHHhCCEEEEehhhhch-hccc-Ccccc--ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccC
Q 017633 167 RRITKENGALLIFDEVMTGF-RLAY-GGAQE--YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 241 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~-~~g~-~~~~~--~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~ 241 (368)
+++|++||+++|+||+|+++ . |. ..... ..+..+++.|+||.++ +|+|+||+++++++++.+.. .....++
T Consensus 178 ~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~ 253 (381)
T 1v2d_A 178 ARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG---MRQWTSF 253 (381)
T ss_dssp HHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH---HHHHHTS
T ss_pred HHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHH---HHhhccc
Confidence 99999999999999999887 4 32 11222 2355667789999998 78999999999888877752 2234567
Q ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 242 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
+.++++++++.++++....+++.+++.++.+..++.+.+.+.+.++....+..+.++|+.+. ..
T Consensus 254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~-------------~~--- 317 (381)
T 1v2d_A 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELP-------------GW--- 317 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECT-------------TC---
T ss_pred CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEEecC-------------hH---
Confidence 88999999988888755223333444444444444444443334444333333556676652 11
Q ss_pred HHHHHHHHHcCeeecCCC--------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 322 ARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~--------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++...|.++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 318 -~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 318 -DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370 (381)
T ss_dssp -CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred -hHHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 15667788999998763 2345666666999999999999998754
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=236.03 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=219.2
Q ss_pred cCCCcHHHHHHHHHHHHcCC-CCCC-CChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 7 LFPSYLQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..+.+|++++++.+++.+.. .|+. ..+..+++++++++.++ +.+++++++||++|+..+++.+ ..+++.|++.
T Consensus 38 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~ 115 (391)
T 3dzz_A 38 DFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF--TSPGDQILVQ 115 (391)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEEC
T ss_pred CCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh--CCCCCeEEEC
Confidence 33478999999999987632 2221 33556677777776654 4789999999999999999876 3567899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|++....+.. .|..+...+.....+ ... .|++++++++++ ++++++++++.++++|.+.++.+
T Consensus 116 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~--------~~~---~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~~~~~ 181 (391)
T 3dzz_A 116 EPVYNMFYSVIEG-NGRRVISSDLIYENS--------KYS---VNWADLEEKLAT--PSVRMMVFCNPHNPIGYAWSEEE 181 (391)
T ss_dssp SSCCHHHHHHHHH-TTCEEEECCCEEETT--------EEE---CCHHHHHHHHTS--TTEEEEEEESSBTTTTBCCCHHH
T ss_pred CCCcHHHHHHHHH-cCCEEEEeeeeecCC--------cee---ecHHHHHHHHhc--cCceEEEEECCCCCCCcccCHHH
Confidence 9999875444333 333222211100011 000 189999999974 36777777766677777665444
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc-CccccccCC-Ccc----hhhhhhhcc-CCccceeeeeh-HHHHHHhcCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD----LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPA 232 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~-~~d----i~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~ 232 (368)
+++|+++|++||+++|+||+|+++ +.|. ......+.. .+| +.|+||.++ +|+|+||++++ +++++.+...
T Consensus 182 -l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~ 260 (391)
T 3dzz_A 182 -VKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEES 260 (391)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHH
Confidence 999999999999999999999887 5553 233333332 256 568999998 89999999886 8888877631
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.....+++.++++++++.++++...+ +...+++.++++++.+.|++... +.....+..+.+.|+.+...
T Consensus 261 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~----- 331 (391)
T 3dzz_A 261 --FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVP--EVKVLDSNASYLAWVDISAL----- 331 (391)
T ss_dssp --HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSEECCCCBSSEEEEECGGG-----
T ss_pred --HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCC--CcEEeccCceEEEEEehhhc-----
Confidence 11234567888999998888875311 22334444444445444444211 23222233344555655311
Q ss_pred chhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 311 EDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..+..++.+.|+ ++||.+.++.. ..+|+++..+++++++++++|+++++++
T Consensus 332 -------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 332 -------GMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp -------CSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred -------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 123578999996 88999998642 3457777789999999999999998763
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=238.29 Aligned_cols=307 Identities=15% Similarity=0.102 Sum_probs=210.3
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+++ +|.+++++.+++......+.+.....++++.+++++ + +++++++++||++|+..+++.+ ..+++.|
T Consensus 40 ~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~v 116 (370)
T 2z61_A 40 DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI--IDDGDEV 116 (370)
T ss_dssp SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh--cCCCCEE
Confidence 3454 789999999988763222222233455555555554 2 4689999999999999999876 3467899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++..++|++....+. ..|..+ +.++ .|++++++.++ ++++++++++.++++|.+.+
T Consensus 117 l~~~p~~~~~~~~~~-~~g~~~-------------------~~v~-~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~ 172 (370)
T 2z61_A 117 LIQNPCYPCYKNFIR-FLGAKP-------------------VFCD-FTVESLEEALS---DKTKAIIINSPSNPLGEVID 172 (370)
T ss_dssp EEESSCCTHHHHHHH-HTTCEE-------------------EEEC-SSHHHHHHHCC---SSEEEEEEESSCTTTCCCCC
T ss_pred EEeCCCchhHHHHHH-HcCCEE-------------------EEeC-CCHHHHHHhcc---cCceEEEEcCCCCCcCcccC
Confidence 999999988654432 223221 2222 28999999987 36777777666667788887
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
++ |.++|++||+++|+||+|+++ +.|.......+ +....+.|+||.++ +|+|+||+++++++++.+..
T Consensus 173 ----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~- 246 (370)
T 2z61_A 173 ----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILK- 246 (370)
T ss_dssp ----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH-
T ss_pred ----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHH-
Confidence 66 999999999999999999887 54432222222 23334568999998 89999999999998887762
Q ss_pred CCccccccCCCCHHHHHHHHHHHHH-Hcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~-~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.....+++.+++++.++.++++. ..+ +.+.++++++++++.+.|++. +.....+..+.++|+.+.
T Consensus 247 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~------ 314 (370)
T 2z61_A 247 --LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIGAYYVFPNIG------ 314 (370)
T ss_dssp --HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCBTTEECCBCS------
T ss_pred --HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCcceEEEEecC------
Confidence 33445667899999988887764 211 223445555555555555543 332222233445555441
Q ss_pred cchhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 310 FEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. +..++.+.|+ ++||.+.++. ...+|+++..+++++++++++|+++++
T Consensus 315 -------~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 315 -------E--DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -------S--CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -------C--CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 1 2467899998 7899998863 334677777899999999999999875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=238.31 Aligned_cols=344 Identities=13% Similarity=0.073 Sum_probs=223.9
Q ss_pred CcHHHHHHHHHHHHcCC---CCCCC---ChhHHHHHHHHHhhCC---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 10 SYLQVLAALGETMKKGT---SFGAP---CLLENVLAEMVISAVP---SI-EMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---~~~~~---~~~~~~l~~~l~~~~~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+|.+++++.+++.... .|+.+ .+...++++++.+.++ .+ +++++++||++++..+++.+ ..+++.|+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~--~~~gd~vl 119 (422)
T 3fvs_A 42 PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL--VDEGDEVI 119 (422)
T ss_dssp CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH--CCTTCEEE
T ss_pred CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH--cCCCCEEE
Confidence 57789999999887632 23211 2334444444444333 23 68999999999999999876 35678899
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCC---CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
+..++|++...... ..|..+...+... ..+... ...... -|+++++++++ ++++++++++.+|++|.+
T Consensus 120 ~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~G~~~--~~~~~~---~d~~~l~~~~~---~~~~~v~~~~p~nptG~~ 190 (422)
T 3fvs_A 120 IIEPFFDCYEPMTM-MAGGRPVFVSLKPGPIQNGELG--SSSNWQ---LDPMELAGKFT---SRTKALVLNTPNNPLGKV 190 (422)
T ss_dssp EEESCCTTHHHHHH-HTTCEEEEEECBCCCCCSSSCC--BGGGSB---CCHHHHHTTCC---TTEEEEEEESSCTTTCCC
T ss_pred EcCCCchhhHHHHH-HcCCEEEEEecccccccccccc--cccCCC---CCHHHHHhhcC---CCceEEEECCCCCCCCcC
Confidence 99999988654333 3333332211111 011000 000001 17999998887 467777777766667776
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHh
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~ 229 (368)
. +.+.+++|+++|++||+++|+||+|+++ +.+.. .....+ +..+.+.|+||.++ +|+|+||+++++++++.+
T Consensus 191 ~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~ 269 (422)
T 3fvs_A 191 F-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHL 269 (422)
T ss_dssp C-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHH
Confidence 6 5555999999999999999999999887 54432 222222 22345679999999 899999999999888877
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHH-----HccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
.. .....+++.++++++++.++++. ...+.+.+++.++.+..++.+.+.+.+.+.....+..+.++|+.+..
T Consensus 270 ~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 346 (422)
T 3fvs_A 270 RT---VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISD 346 (422)
T ss_dssp HH---HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHH
T ss_pred HH---HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechh
Confidence 62 33456778899999999888874 11245556666666666666666665566554555667777877642
Q ss_pred CCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC-----------CccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-----------EAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..................+++..|++ +||.+.++.. ..+|+++..+++++++++++|+++++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 347 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhhC
Confidence 10000000000000114577777664 6999998642 3457778889999999999999998764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=243.29 Aligned_cols=323 Identities=15% Similarity=0.114 Sum_probs=213.8
Q ss_pred ccCCCcHHHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 6 ILFPSYLQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
+.++.+|++++++.+++.+. ..|+ +.....++++.++++++ +.+++++++||++++..+++.+ ..+++.|++
T Consensus 44 ~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~--~~~gd~Vl~ 120 (397)
T 2zyj_A 44 PELFPKEEAAEAAARILREKGEVALQYS-PTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF--LDEGSPVLL 120 (397)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHTSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEE
T ss_pred chhCCHHHHHHHHHHHHHhcchhhhCCC-CCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh--CCCCCEEEE
Confidence 34567789999999887652 2232 33456889999999886 5689999999999999999876 346789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEE-cccCCCCCcccCC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 159 (368)
..++|++....+.. .|..+...+... .+ .|++++++.+++. +++++++ ...++++|.+ .+
T Consensus 121 ~~p~y~~~~~~~~~-~g~~~~~~~~~~-~~--------------~d~~~l~~~l~~~--~~~~v~~~~~~~nptG~~-~~ 181 (397)
T 2zyj_A 121 EAPSYMGAIQAFRL-QGPRFLTVPAGE-EG--------------PDLDALEEVLKRE--RPRFLYLIPSFQNPTGGL-TP 181 (397)
T ss_dssp EESCCHHHHHHHHT-TCCEEEEEEEET-TE--------------ECHHHHHHHHHHC--CCSCEEECCBSCTTTCCB-CC
T ss_pred eCCCcHHHHHHHHH-cCCEEEecCcCC-CC--------------CCHHHHHHHHhhc--CCeEEEECCCCcCCCCCc-CC
Confidence 99999886544332 233222111110 11 1899999999852 4566644 3334445655 45
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc------CCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF------GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~------~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
.+++++|+++|++||+++|+||+|+++ +.|.. .....+ +....+.|+||++++|+|+||+++++++++.+..
T Consensus 182 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~ 261 (397)
T 2zyj_A 182 LPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQ 261 (397)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHH
Confidence 666999999999999999999999887 54432 222222 2224467899999988999999999988887762
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc---CCceEEeeccceEEEEeecCCCc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA---GHAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
.....+++.+++++.++.++++...- ++.++..+..+..++.+.+.+.+. +.....+..+.++|+.+..
T Consensus 262 ---~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~---- 333 (397)
T 2zyj_A 262 ---AKQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK---- 333 (397)
T ss_dssp ---HHHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST----
T ss_pred ---HHHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC----
Confidence 22344566788998888777752110 122333333333333344433332 2222223456677777631
Q ss_pred ccchhcccccHHHHHHHHHHHHcCeeecCCCC--------CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 309 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--------~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|.++||.+.++.. ..+|+++.. +++++++++++|++++++
T Consensus 334 ---------~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 334 ---------GLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKG 392 (397)
T ss_dssp ---------TCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 12247899999999999988632 234655444 799999999999998864
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=239.78 Aligned_cols=316 Identities=13% Similarity=0.077 Sum_probs=215.1
Q ss_pred CCCcHHHHHHHHHHHHcC-----CCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 8 FPSYLQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
...+|++++++.+++.+. ..|+ +.....++++.+++++ + +.+++++++||++|+..+++.+ ..++
T Consensus 47 ~~~~~~v~~a~~~~~~~~~~~~~~~y~-~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l--~~~g 123 (398)
T 3ele_A 47 IPAPQIVNDTIKELVTDYDSVALHGYT-SAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRAL--TSDA 123 (398)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHSCC-CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH--CCST
T ss_pred CCCCHHHHHHHHHHHhcCCccccCCcC-CCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHH--cCCC
Confidence 346789999999988763 2232 3333345555555543 3 5789999999999999999877 3456
Q ss_pred -ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 76 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 -~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+.|++..++|++....+. ..|..+...+........ |+++++++++ +++++++++..++++|
T Consensus 124 ~d~vl~~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~-------------d~~~l~~~l~---~~~~~v~~~~p~nptG 186 (398)
T 3ele_A 124 YDEFITIAPYFPEYKVFVN-AAGARLVEVPADTEHFQI-------------DFDALEERIN---AHTRGVIINSPNNPSG 186 (398)
T ss_dssp TCEEEEESSCCTHHHHHHH-HTTCEEEEECCCTTTSSC-------------CHHHHHHTCC---TTEEEEEECSSCTTTC
T ss_pred CCEEEEeCCCchhhHHHHH-HcCCEEEEEecCCcCCcC-------------CHHHHHHHhC---cCCCEEEEcCCCCCCC
Confidence 899999999987654433 333333222211111111 8999999887 3677777766666677
Q ss_pred cccCCHHHHHHHHHHHHH------hCCEEEEehhhhch-hcccC--ccccccCCCcchhhhhhhcc-CCccceeeeehHH
Q 017633 155 FIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 224 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~------~~~~li~De~~~~~-~~g~~--~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~ 224 (368)
.+.+.+ .+++|+++|++ ||+++|+||+|.++ +.+.. ......+..+.+.|+||.++ +|+|+||++++++
T Consensus 187 ~~~~~~-~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 265 (398)
T 3ele_A 187 TVYSEE-TIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDE 265 (398)
T ss_dssp CCCCHH-HHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTT
T ss_pred CCCCHH-HHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcch
Confidence 666544 49999999999 99999999999988 54432 22233444456679999999 8999999988876
Q ss_pred H------HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceE
Q 017633 225 I------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 298 (368)
Q Consensus 225 ~------~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 298 (368)
+ .+.+... .....+++.+.+++.++.+.++ +....++++++++++++.|++. +.....+..+.++
T Consensus 266 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~ 336 (398)
T 3ele_A 266 VYDKAELYAAVCGA--GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI----GYHCFKPDGAFYM 336 (398)
T ss_dssp STTHHHHHHHHHHH--HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH----TCCEECCSBSSEE
T ss_pred hhhHHHHHHHHHHH--hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc----CCeecCCCeeEEE
Confidence 3 2222210 0112345667777777655443 4446788888888888888875 3333333344457
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
|+.+.. .+..++++.|.++||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 337 ~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 337 FVKALE--------------DDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp EEECSS--------------SCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC--------------CCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 776521 1246888899999999998752 346777778999999999999999865
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=239.55 Aligned_cols=322 Identities=13% Similarity=0.108 Sum_probs=212.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|.+++++.+++......+.+.....++++.+++++ + +.+++++++||++|+..+++.+ ..+++.|++..
T Consensus 44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~ 121 (388)
T 1j32_A 44 TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM--IEPGDEVIIPA 121 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEES
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcC
Confidence 5788999999988663222222223455555555554 3 4678999999999999999876 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++.... ....|..+...+.....+.. .|++++++.++ ++++++++++.++++|.+.+ .+.
T Consensus 122 ~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~-~~~ 184 (388)
T 1j32_A 122 PFWVSYPEM-VKLAEGTPVILPTTVETQFK------------VSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYT-PDE 184 (388)
T ss_dssp SCCTHHHHH-HHHTTCEEEEECCCGGGTTC------------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-HHH
T ss_pred CCChhHHHH-HHHcCCEEEEecCCcccCCC------------CCHHHHHHhcC---cCceEEEEeCCCCCCCcCCC-HHH
Confidence 999875443 33334333221111100100 17999999987 36777777666666776654 556
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccc-----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY-----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~-----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++||+++|+||+|+++ +.+.. ..... .+..+++.|+||.++ +|+|+||+++++++++.+..
T Consensus 185 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~--- 261 (388)
T 1j32_A 185 VRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATK--- 261 (388)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHH---
Confidence 999999999999999999999887 44421 11111 334556779999998 89999999999988887762
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchh
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+++++++++.++.++++.. +++.++..++.+..++.+.+.+.+. ++....+..+.++|+.+..
T Consensus 262 ~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--------- 330 (388)
T 1j32_A 262 IQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK--------- 330 (388)
T ss_dssp HHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGG---------
T ss_pred HHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCC---------
Confidence 334456788899998888877622 2334444444444444444444444 3322222233444443311
Q ss_pred cccccHHHHHHHHHHHH-cCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~-~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|++ +||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 331 ---~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 331 ---TGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp ---GTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 01234688999986 799999864 2456777778999999999999998865
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=241.71 Aligned_cols=327 Identities=13% Similarity=0.026 Sum_probs=218.3
Q ss_pred CCcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 9 PSYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
..+|.+++++.+++...... +.+.....++++.++++++ ..+++++|+||++|++.+++.+. .+++.|++.
T Consensus 71 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--~~gd~vl~~ 148 (427)
T 3dyd_A 71 PTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--NPGQNILVP 148 (427)
T ss_dssp CCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--CCCCEEEEc
Confidence 36778999999988774332 3355667889999998876 46899999999999999998773 467899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|+++...+.. .|..+....+...... .+ |++++++.+++ +++++++...++++|.+. +.+
T Consensus 149 ~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~---------~~---d~~~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~ 211 (427)
T 3dyd_A 149 RPGFSLYKTLAES-MGIEVKLYNLLPEKSW---------EI---DLKQLEYLIDE---KTACLIVNNPSNPCGSVF-SKR 211 (427)
T ss_dssp ESCCTHHHHHHHH-TTCEEEEEEEEGGGTT---------EE---CHHHHHSSCCT---TEEEEEEESSCTTTCCCC-CHH
T ss_pred CCCchhHHHHHHH-cCCEEEEEecccccCC---------CC---CHHHHHHHhcc---CCCEEEEECCCCCCCCCC-CHH
Confidence 9999876443333 3332221111100000 00 78999988863 566666655566666655 566
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccCCCcchh---hhhhhcc-CCccceeeeeh-------HHHHHH
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGR-------RDIMEM 228 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~~~~di~---s~sK~~~-~G~~iG~v~~~-------~~~~~~ 228 (368)
++++|+++|++||+++|+||+|.+| +.+.. .....++..++++ |+||.++ +|+|+||++++ +++.+.
T Consensus 212 ~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~ 291 (427)
T 3dyd_A 212 HLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDG 291 (427)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHH
Confidence 6999999999999999999999988 55543 2334444444444 8999987 78999999886 456666
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (368)
+.. . ...++++++++++++.++++... .++.+...++.+..++.+.+.+.+.+ +....+..+.++++.+.....
T Consensus 292 l~~---~-~~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~ 366 (427)
T 3dyd_A 292 LVK---L-SQRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHF 366 (427)
T ss_dssp HHH---H-HHHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGC
T ss_pred HHH---H-HhccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhc
Confidence 652 1 22356889999999988887432 22333333333444444444444443 222234456677776642110
Q ss_pred cccchhcccccHHHHHHHHHHH-HcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++..+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 367 --------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 367 --------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp --------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 11123467888886 7899999874 2346777788999999999999998864
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=244.15 Aligned_cols=323 Identities=12% Similarity=0.039 Sum_probs=214.1
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCC-ChhHHHHHHHHHhhC----C-C--C-CeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAV----P-S--I-EMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~----~-~--~-~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++ .+|.+++++.+++.+....+++ .....++++.+++++ + + + +++++++||+++++.+++.+ ..+++
T Consensus 58 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l--~~~gd 134 (404)
T 2o1b_A 58 DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV--INPGD 134 (404)
T ss_dssp SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH--CCTTC
T ss_pred CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh--cCCCC
Confidence 344 5789999999887542111222 234566777777665 5 2 2 79999999999999999876 34578
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++..++|++....+. ..|..+...+... .++. .|+++|++.++ +++++++++..++++|.+
T Consensus 135 ~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~~~~------------~d~~~l~~~l~---~~~~~v~l~~p~nptG~~ 197 (404)
T 2o1b_A 135 YVLLPDPGYTDYLAGVL-LADGKPVPLNLEP-PHYL------------PDWSKVDSQII---DKTKLIYLTYPNNPTGST 197 (404)
T ss_dssp EEEEEESCCSSHHHHHH-HTTCEEEEEECCT-TTCC------------CCGGGSCHHHH---HHEEEEEECSSCTTTCCC
T ss_pred EEEEcCCCchhHHHHHH-HCCCEEEEeccCc-ccCc------------CCHHHHHHhhc---cCceEEEEcCCCCCCCcc
Confidence 99999999998755443 3343332221111 1110 17888888886 367777776555556765
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhc
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~ 230 (368)
. +.+++++|+++|++||+++|+||+|+++ +.+.......+ +..+.+.|+||.++ +|+|+||+++++++++.+.
T Consensus 198 ~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~ 276 (404)
T 2o1b_A 198 A-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALK 276 (404)
T ss_dssp C-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHH
Confidence 4 5666999999999999999999999887 44432111111 22344678999998 8999999999999888876
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
. .....+++.++++++++.++++.. +++.++.++..+..++.+.+.+.+.+.....+..+.++|+.+..
T Consensus 277 ~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~------ 345 (404)
T 2o1b_A 277 K---YQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPP------ 345 (404)
T ss_dssp H---HHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSEEEEECCT------
T ss_pred H---HHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceEEEEeCCC------
Confidence 2 233445678999999988888753 22344444444444444444444344433223334557777631
Q ss_pred chhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 346 -------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 346 -------GYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp -------TCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred -------CCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 112467888887 5799999863 2345676666889999999999998865
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=240.31 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=218.3
Q ss_pred cCCCcHHHHHHHHHHHHcCC--CCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 7 LFPSYLQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.++.+|++++++.+++.+.. .++.+.....++++.+++++ + +.+++++++||++|+..+++.+ ..+++.
T Consensus 47 ~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~--~~~gd~ 124 (407)
T 2zc0_A 47 ELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL--IDPGDV 124 (407)
T ss_dssp TTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCE
T ss_pred hhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh--cCCCCE
Confidence 35567889999999887631 11223334556666666665 4 4689999999999999999877 346789
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHH----cCCCCeEEEEEccc-CCC
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNKGEIAAIILEPV-VGN 152 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~----~~~~~~~~~~~~~~-~~~ 152 (368)
|++..++|++.... +...|..+...+... .+ .|+++|++.++ ++ ++++++++.++ +++
T Consensus 125 vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~-~~~~~v~~~~~~~np 187 (407)
T 2zc0_A 125 VITENPSYINTLLA-FEQLGAKIEGVPVDN-DG--------------MRVDLLEEKIKELKAKG-QKVKLIYTIPTGQNP 187 (407)
T ss_dssp EEEEESCCHHHHHH-HHTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTT
T ss_pred EEEeCCChHHHHHH-HHHcCCEEEEcccCC-CC--------------CCHHHHHHHHHhhhccc-CCceEEEECCCCCCC
Confidence 99999999885433 333333222111110 11 18999999997 42 36777755444 444
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc---CCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~---~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+|.+ .+.+++++|+++|++||+++|+||+|+++ +.+.. .....+ +...++.|+||.+++|+|+||+++++++++
T Consensus 188 tG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~ 266 (407)
T 2zc0_A 188 MGVT-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILK 266 (407)
T ss_dssp TCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHH
T ss_pred CCcC-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHH
Confidence 6655 45667999999999999999999999887 54432 222222 333467799999999999999999998888
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHH--c-c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--K-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~--~-~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
.+.. .....+++.+++++.++.++++.. . + +...+++.++++++.+.|++... +.....+..+.++|+.+
T Consensus 267 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~ 341 (407)
T 2zc0_A 267 KVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLP--NAEFTKPIAGMFVMFFL 341 (407)
T ss_dssp HHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCT--TSCBCCCSBSSEEEEEC
T ss_pred HHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEecCCCcEEEEEEc
Confidence 7763 223345667889998888888643 1 1 34566667777777777765421 12222234456777776
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC--------CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF--------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~--------~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
.. ..+..++.+.|+++ ||.+.++.. ..+|+++.. +++++++++++|++++++
T Consensus 342 ~~-------------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 342 PE-------------GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp ST-------------TCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred CC-------------CCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 21 12347899999998 999998632 234555444 799999999999998865
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=231.14 Aligned_cols=314 Identities=13% Similarity=0.054 Sum_probs=217.0
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++ .+|++++++.+++... ..++.....+++++++++++ +.+++++++||++++..+++.+ ..+++.|++..+
T Consensus 26 ~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~ 100 (354)
T 3ly1_A 26 NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAY--ASLEAQLVIPEL 100 (354)
T ss_dssp CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEESS
T ss_pred CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHH--hCCCCeEEECCC
Confidence 3444 7889999999988763 34466778999999999998 6789999999999999999876 346789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|++..... ...|..+...+......+ |+++++++++++ ++++++++++.++++|.+.+.+ .+
T Consensus 101 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~~~~-~l 163 (354)
T 3ly1_A 101 TYGDGEHFA-KIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SGPSIVYLVNPNNPTGTITPAD-VI 163 (354)
T ss_dssp SCTHHHHHH-HHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SSCEEEEEESSCTTTCCCCCHH-HH
T ss_pred CchHHHHHH-HHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CCCCEEEEeCCCCCcCCCcCHH-HH
Confidence 888764333 333333322222111111 899999999853 3577777666666677766633 37
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccC-ccc---ccc-CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~---~~~-~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
++|+++| +||+++|+||+|.++ ..+.. ... +.. +....+.|+||.++ +|+|+||+++++++++.+....
T Consensus 164 ~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--- 239 (354)
T 3ly1_A 164 EPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYV--- 239 (354)
T ss_dssp HHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGT---
T ss_pred HHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhc---
Confidence 7777777 699999999999887 54432 111 122 33455678999999 8999999999999998887432
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
..++.++++++++.++++.. ++.++.+++.+..++.+.+.+.+.++. ..++.+.++|+.+..
T Consensus 240 --~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~------------ 301 (354)
T 3ly1_A 240 --AGEKINFSGVDAALASMNDS---AFITYSKKSNDVSRQILLKALEDLKLP-YLPSEGNFVFHQLVV------------ 301 (354)
T ss_dssp --TCSCCCHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-BCCCCSSEEEEECSS------------
T ss_pred --CCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHCCCe-ECCCCceEEEEECCC------------
Confidence 22678999999888877622 233333344444444444433333433 234556777776521
Q ss_pred ccHHHHHHHHHHHHcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+..++.+.|.++||.+. +. ...+|+++. +++|+++++++|++++++
T Consensus 302 ---~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 ---PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp ---CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 24788999999999998 42 233566654 889999999999999864
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=245.13 Aligned_cols=325 Identities=13% Similarity=0.134 Sum_probs=214.6
Q ss_pred cCCCcHHHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 7 LFPSYLQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.++.+|++++++.+++... ..|+ +.....++++.+++++ + +.+++++++||++++..+++.+ ..+
T Consensus 56 ~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l--~~~ 132 (425)
T 1vp4_A 56 ETFPRKELAEIAKEIIEKEYHYTLQYS-TTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF--LDD 132 (425)
T ss_dssp GGSCHHHHHHHHHHHHHHSHHHHTSCC-CTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH--CCT
T ss_pred ccCCHHHHHHHHHHHHhhcchhhcCCC-CCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHh--CCC
Confidence 4567789999999988753 2232 2233456666666655 4 3579999999999999999866 346
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-----CCCeEEEEEccc
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-----KGEIAAIILEPV 149 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-----~~~~~~~~~~~~ 149 (368)
++.|++..++|++....+.. .|..+...+... .+ .|++++++.+++. ..+++++++.++
T Consensus 133 gd~Vl~~~p~y~~~~~~~~~-~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 133 ESYCVLDDPAYLGAINAFRQ-YLANFVVVPLED-DG--------------MDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp TCEEEEEESCCHHHHHHHHT-TTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred CCEEEEeCCCcHHHHHHHHH-cCCEEEEeccCC-CC--------------CCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 78999999999886544332 333222111110 11 1899999999741 126777754444
Q ss_pred -CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc---CCCcchhhhhhhccCCccceeeeehH
Q 017633 150 -VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRR 223 (368)
Q Consensus 150 -~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~---~~~~di~s~sK~~~~G~~iG~v~~~~ 223 (368)
++++|.+ .+.+++++|+++|++||+++|+||+|+++ +.+.. .....+ +....+.|+||.+++|+|+||+++++
T Consensus 197 ~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCH
T ss_pred CCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCH
Confidence 4445655 45666999999999999999999999887 54432 222222 23344669999999899999999999
Q ss_pred HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc--c--CCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceE
Q 017633 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E--PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMF 298 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~--~--~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~ 298 (368)
++++.+.. .....+++.|++++.++.++++... + +...++++++++++.+.|++..... +.....+..+.++
T Consensus 276 ~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~ 352 (425)
T 1vp4_A 276 EFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI 352 (425)
T ss_dssp HHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEE
T ss_pred HHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEE
Confidence 88887763 2334556779999999888887531 1 2234445555666666665532110 2222223456677
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC--------CCccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
|+.+.. ..+..++++.|+++||.+.++. ...+|+++.. +++++++++++|++++.+
T Consensus 353 ~~~~~~-------------~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 353 WLTLPE-------------GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp EEECCT-------------TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC-------------CCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 877632 1123568889999999998863 2335665544 799999999999998754
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=234.76 Aligned_cols=324 Identities=11% Similarity=0.036 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHHcCC-CCC-CCChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 8 FPSYLQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~-~~~-~~~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+.+|++++++.+++.+.. .|+ ...+...++++++++.++ +.+++++++||++|++.+++.+ ..+++.|++..
T Consensus 44 ~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~ 121 (391)
T 4dq6_A 44 FKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQE 121 (391)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcC
Confidence 3467899999999887632 221 235677788888888765 4789999999999999999877 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
++|++....+.. .|..+...+.. ...+ ... -|+++++++++ + ++++++++.++++|.+.++.+
T Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~--------~~~---~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~~ 185 (391)
T 4dq6_A 122 PVYSPFNSVVKN-NNRELIISPLQKLENG--------NYI---MDYEDIENKIK---D-VKLFILCNPHNPVGRVWTKDE 185 (391)
T ss_dssp SCCTHHHHHHHH-TTCEEEECCCEECTTS--------CEE---CCHHHHHHHCT---T-EEEEEEESSBTTTTBCCCHHH
T ss_pred CCCHHHHHHHHH-cCCeEEeeeeeecCCC--------ceE---eeHHHHHHHhh---c-CCEEEEECCCCCCCcCcCHHH
Confidence 999886544433 33332221111 0011 000 18999999997 3 777777666666777655444
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-----CCCcchhhhhhhcc-CCccceeeeehH-HHHHHhcCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-----GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPA 232 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-----~~~~di~s~sK~~~-~G~~iG~v~~~~-~~~~~~~~~ 232 (368)
+++|+++|++||+++|+||+|+++ +.|.. .....+ +....+.|+||.++ +|+|+||+++++ ++++.+...
T Consensus 186 -l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~ 264 (391)
T 4dq6_A 186 -LKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA 264 (391)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999887 54432 122121 22234668999998 899999998864 777776631
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEEeec-cceEEEEeecCCCccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYI-SGMFGFFFTEGPVYNF 310 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 310 (368)
.....+++.++++++++.++++.. +++.++..++.+..++.+.+.+.+ .+......+. +.+.|+.+...
T Consensus 265 --~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 335 (391)
T 4dq6_A 265 --FTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL----- 335 (391)
T ss_dssp --HHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-----
T ss_pred --HHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-----
Confidence 112345578899999988888743 233444444444444444444433 2222223333 34445665310
Q ss_pred chhcccccHHHHHHHHHHHHc-CeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 311 EDAKKSETTKFARFYRGMLEE-GVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..+..++.+.|+++ ||.+.++.. ..+|+++..+++++++++++|+++++
T Consensus 336 -------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 336 -------GLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp -------CCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -------CCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 12357899999998 999988632 34677777899999999999998863
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=236.46 Aligned_cols=318 Identities=16% Similarity=0.133 Sum_probs=214.7
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 7 LFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
++ .+|.+++++.+++......+.+.....++++.+++++ + +++++++++||++|+..+++.+ ..+++.|+
T Consensus 53 ~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l--~~~gd~Vl 129 (389)
T 1o4s_A 53 FP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL--LDPGDEVI 129 (389)
T ss_dssp SC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEE
T ss_pred CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh--CCCCCEEE
Confidence 44 3788999999988663222222233456666666654 3 4679999999999999999876 34678999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|++....+ ...|..+...+.....++. -|+++++++++ ++++++++++.++++|.+. +
T Consensus 130 ~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~ 192 (389)
T 1o4s_A 130 VFSPVWVSYIPQI-ILAGGTVNVVETFMSKNFQ------------PSLEEVEGLLV---GKTKAVLINSPNNPTGVVY-R 192 (389)
T ss_dssp EEESCCTTHHHHH-HHTTCEEEEEECCGGGTTC------------CCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-C
T ss_pred EcCCCchhHHHHH-HHcCCEEEEEecCCccCCC------------CCHHHHHHhcc---cCceEEEEcCCCCCCCCCC-C
Confidence 9999998865443 3333333221111100100 17999999886 3677777766666677655 4
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
.+++++|+++|++||+++|+||+|+++ ..+.......+ +....+.|+||.++ +|+|+||+++++++++.+..
T Consensus 193 ~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~-- 270 (389)
T 1o4s_A 193 REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSK-- 270 (389)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHH--
Confidence 556999999999999999999999877 44422222222 33334568999998 89999999999988887762
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+++.+++++.++.++++.. -+.+.+++.++++++.+.|++. ++....+..+.++|+.+.
T Consensus 271 -~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~---------- 334 (389)
T 1o4s_A 271 -IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----GVKFVEPEGAFYLFFKVR---------- 334 (389)
T ss_dssp -HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----TCCCCCCSBSSEEEEECS----------
T ss_pred -HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc----CCeeecCCcceEEEEeCC----------
Confidence 334456778888888877766421 1334566666677776666653 332222333555666552
Q ss_pred cccccHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..++.+.|+ ++||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 335 -----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 335 -----GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp -----SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred -----CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 12467889997 88999988742 345676667999999999999998854
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=236.23 Aligned_cols=316 Identities=11% Similarity=0.034 Sum_probs=212.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCC---CChhHHHHHHHHHhhCC----CCC-eEEEeCChHHHHHHHHHHHHHhcCC----ce
Q 017633 10 SYLQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP----SIE-MVRFVNSGTEACMGVLRLARAFTGR----ER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~----~~~-~v~~~~~gt~a~~~al~~~~~~~~~----~~ 77 (368)
.+|.+++++.+++.....|+. ..+...++++++.+.++ +++ ++++++||++++..+++.+.. +++ +.
T Consensus 44 ~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~ 122 (396)
T 3jtx_A 44 TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN-PVSDGIKPA 122 (396)
T ss_dssp CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC-C---CCCCE
T ss_pred CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCE
Confidence 678999999998765434432 23455556666655554 266 999999999999999987732 222 68
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++..++|++....+. ..|..+...+.. ..++. -|+++++++++. ++++++++..+|++|.+.
T Consensus 123 vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~g~~------------~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~ 185 (396)
T 3jtx_A 123 IVSPNPFYQIYEGATL-LGGGEIHFANCP-APSFN------------PDWRSISEEVWK---RTKLVFVCSPNNPSGSVL 185 (396)
T ss_dssp EEEEESCCHHHHHHHH-HTTCEEEEEECC-TTTCC------------CCGGGSCHHHHH---TEEEEEEESSCTTTCCCC
T ss_pred EEEcCCCcHhHHHHHH-HcCCEEEEeecC-CCCCc------------cCHHHHHHhhcc---CcEEEEEECCCCCCCCcC
Confidence 9999999987654433 333333222221 11111 078888888874 577777665566667666
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc-cCcccc--------ccCCCcchhhhhhhcc-CCccceeeeehHHHH
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQE--------YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 226 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g-~~~~~~--------~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~ 226 (368)
+.++ +++|+++|++||+++|+||+|.++ +.+ ...... ..+..+++.|+||.++ +|+|+||++++++++
T Consensus 186 ~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 264 (396)
T 3jtx_A 186 DLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELL 264 (396)
T ss_dssp CHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHH
T ss_pred CHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHH
Confidence 5444 999999999999999999999988 554 222211 1445566789999988 789999999999998
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
+.+.. .....+++.++++++++.++++ .+++.++.+++.+..++.+.+.+.+. .....+..+.++|+.+..
T Consensus 265 ~~~~~---~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~-- 335 (396)
T 3jtx_A 265 KNFLL---YRTYHGSAMSIPVQRASIAAWD---DEQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPD-- 335 (396)
T ss_dssp HHHHH---HHHHHTCCCCHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTT--
T ss_pred HHHHH---HHhhcccCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCC--
Confidence 88762 3344567889999999888876 23344445555555555555544433 122233446677777631
Q ss_pred CcccchhcccccHHHHHHHHHHHH-cCeeecCCCC------------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+..++++.|++ +||.+.++.. ..+|+++..+++++++++++|++++
T Consensus 336 ------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 336 ------------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp ------------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ------------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 124678888864 6999988632 3456777779999999999999875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=238.40 Aligned_cols=318 Identities=14% Similarity=0.085 Sum_probs=206.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+++.+....+.+.....++++.+++++ + +.+++++|+||++|+..+++.+ ..+++.|++..
T Consensus 45 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~ 122 (391)
T 3h14_A 45 APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTAL--FDSGDRVGIGA 122 (391)
T ss_dssp SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHh--cCCCCEEEEcC
Confidence 3788999999988653222222223456666666654 2 5789999999999999999876 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++....+. ..|..+.........++. -|++++++. +++++++++.++++|.+.+.+ .
T Consensus 123 p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~------------~d~~~l~~~------~~~~v~i~~p~nptG~~~~~~-~ 182 (391)
T 3h14_A 123 PGYPSYRQILR-ALGLVPVDLPTAPENRLQ------------PVPADFAGL------DLAGLMVASPANPTGTMLDHA-A 182 (391)
T ss_dssp SCCHHHHHHHH-HTTCEEEEEECCGGGTTS------------CCHHHHTTS------CCSEEEEESSCTTTCCCCCHH-H
T ss_pred CCCccHHHHHH-HcCCEEEEeecCcccCCC------------CCHHHHHhc------CCeEEEECCCCCCCCccCCHH-H
Confidence 99987654333 333332221111111110 177877655 355555555566667666544 4
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc-CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~-~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
+++|+++|++||+++|+||+|+++ +.+.......+ +....+.|+||.++ +|+|+||+++++++++.+.. .....
T Consensus 183 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~---~~~~~ 259 (391)
T 3h14_A 183 MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVER---IAQNM 259 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHH---HHHHT
T ss_pred HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHH---HHhhh
Confidence 999999999999999999999988 55433222222 23344568999998 89999999999888887762 33446
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCcccchhccccc
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
+++++++++.++.++++ .+++.++.+++.+..++.+.+.+.+.+...... ..+.++|+.+... .
T Consensus 260 ~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~ 324 (391)
T 3h14_A 260 FICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDL------------T 324 (391)
T ss_dssp TCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTT------------C
T ss_pred ccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCcc------------C
Confidence 67888999988887776 223344444444444455544444444432222 3345666665310 1
Q ss_pred HHHHHHHHHHHHc-CeeecCCC-------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 319 TKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 319 ~~~~~~~~~l~~~-Gi~~~~~~-------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..++++.|+++ ||.+.++. ...+|+++..+++++++++++|++++.+
T Consensus 325 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 325 DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 2357888998876 99998863 2245677777999999999999999865
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=239.88 Aligned_cols=320 Identities=17% Similarity=0.131 Sum_probs=211.4
Q ss_pred CcHHHHHHHHHHHHcC-CCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+++++.+++.+. ..|. +.....++++.+++++ + +.+ ++++++||++|+..+++.+ ..+++.|++
T Consensus 39 ~~~~v~~a~~~~~~~~~~~y~-~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~--~~~gd~Vl~ 115 (411)
T 2o0r_A 39 GPPKMLQAAQDAIAGGVNQYP-PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL--VEPGSEVLL 115 (411)
T ss_dssp CCHHHHHHHHHHHHTTCCSCC-CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH--CCTTCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEE
Confidence 6789999999998763 2232 2222345555555553 3 356 8999999999999999876 346789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
..++|++.... +...|..+...+.... .+ .. .|+++++++++ ++++++++++.++++|.+. +
T Consensus 116 ~~~~y~~~~~~-~~~~g~~~~~v~~~~~~~~---------~~---~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~-~ 178 (411)
T 2o0r_A 116 IEPFYDSYSPV-VAMAGAHRVTVPLVPDGRG---------FA---LDADALRRAVT---PRTRALIINSPHNPTGAVL-S 178 (411)
T ss_dssp EESCCTTHHHH-HHHTTCEEEEEECEEETTE---------EE---CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-C
T ss_pred eCCCcHhHHHH-HHHcCCEEEEeeccccccC---------CC---CCHHHHHHhhc---cCceEEEEeCCCCCCCCCC-C
Confidence 99999986443 3333433222111100 00 00 18999999986 3677777776666677655 5
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
.+++++|+++|++||+++|+||+|+++ +.|.. ..... .+..+.+.|+||.++ +|+|+||+++++++++.+..
T Consensus 179 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~- 257 (411)
T 2o0r_A 179 ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRA- 257 (411)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHH-
Confidence 566999999999999999999999887 54431 22222 233445679999998 89999999999988887762
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.....+++.++++++++.++++...+ +.+.+++.++++++.+.|++ .+.....+..+.++|+.+...
T Consensus 258 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~----- 326 (411)
T 2o0r_A 258 --AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE----IGFAVHDSYGTYFLCADPRPL----- 326 (411)
T ss_dssp --HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----HTCEECCCCBSSEEEEECGGG-----
T ss_pred --HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCEecCCCeeEEEEEecCCC-----
Confidence 22344667788888888888874311 22344455555555555544 343322233455777776320
Q ss_pred chhcccccHHHHHHHHHHH-HcCeeecCCC-----------------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 327 ------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 327 ------GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp ------TCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC-
T ss_pred ------CCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 0012467888887 6799998752 2345677777999999999999987643
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=235.70 Aligned_cols=320 Identities=16% Similarity=0.152 Sum_probs=208.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|.+++++.+.+......+.+.....++++.+++++ + +++++++|+||++++..+++.+ ..++|.|++..
T Consensus 45 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l--~~~gd~Vlv~~ 122 (385)
T 1b5p_A 45 TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI--LDPGDEVIVLS 122 (385)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh--cCCCCEEEEcC
Confidence 3578999998887653222222223455555555544 3 3679999999999999999766 35678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++..... ...|..+.........++. .|+++++++++ ++++++++...+|++|.+++ .+.
T Consensus 123 p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~-~~~ 185 (385)
T 1b5p_A 123 PYWVSYPEMV-RFAGGVVVEVETLPEEGFV------------PDPERVRRAIT---PRTKALVVNSPNNPTGAVYP-KEV 185 (385)
T ss_dssp SCCTHHHHHH-HHTTCEEEEEECCGGGTTC------------CCHHHHHTTCC---TTEEEEEEESSCTTTCCCCC-HHH
T ss_pred CCchhHHHHH-HHcCCEEEEeecCcccCCC------------CCHHHHHHhcC---CCCEEEEEeCCCCCCCCCcC-HHH
Confidence 9987654333 3334333221111101110 17899998886 35666666555555666554 455
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc--CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF--GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~--~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
+++|+++|++||+++|+||+|.++ ..+....+..+ +....+.||||.++ +|+|+||+++++++++.+.. ....
T Consensus 186 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~---~~~~ 262 (385)
T 1b5p_A 186 LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMAS---VSRQ 262 (385)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH---HHHT
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHH---HHhh
Confidence 999999999999999999999887 43322222222 22233568999999 79999999999988887762 2233
Q ss_pred ccCCCCHHHHHHHHHHHHH---Hcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 239 GTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.+++++.+++.++.++++. ..+ +...++++++++++.+.|++. ++....+..+.++|..+...
T Consensus 263 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------- 330 (385)
T 1b5p_A 263 STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGAFYVLMDTSPI-------- 330 (385)
T ss_dssp TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSBTTEEEEECTTT--------
T ss_pred ccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCeeEEEEEecCCC--------
Confidence 4567888999888888763 211 223445555555665555553 33322333445566655210
Q ss_pred cccccHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+..++.+.|+++||.+.++.. ..+|+++..+++++++++++|++++.+
T Consensus 331 ----~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 331 ----APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp ----CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred ----CCCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 11247789999999999998743 346777788999999999999887654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=231.98 Aligned_cols=311 Identities=14% Similarity=0.068 Sum_probs=217.8
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++ .+|++++++.+++..... ++.....+++++++++++ +.+++++++||++|+..+++.+ +.|++..+
T Consensus 36 ~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~------d~vi~~~~ 106 (361)
T 3ftb_A 36 NPLG-IPKSFLNNIDEGIKNLGV--YPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF------EKILIIVP 106 (361)
T ss_dssp CTTC-SCHHHHTTHHHHHHGGGS--CCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC------SEEEEEES
T ss_pred CCCC-CCHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc------CcEEEecC
Confidence 4444 578999999998877433 355667899999999997 6789999999999999999754 78999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|++....... .|..+...+.....++ ++++++++++. +++++++..++++|.+.+. +++
T Consensus 107 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~--------------~~~~l~~~l~~----~~~v~i~~p~nptG~~~~~-~~l 166 (361)
T 3ftb_A 107 SYAEYEINAKK-HGVSVVFSYLDENMCI--------------DYEDIISKIDD----VDSVIIGNPNNPNGGLINK-EKF 166 (361)
T ss_dssp CCTHHHHHHHH-TTCEEEEEECCTTSCC--------------CHHHHHHHTTT----CSEEEEETTBTTTTBCCCH-HHH
T ss_pred ChHHHHHHHHH-cCCeEEEeecCcccCC--------------CHHHHHHhccC----CCEEEEeCCCCCCCCCCCH-HHH
Confidence 99886544333 3333322212111122 68999999872 5555555555666765554 449
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCC---cchhhhhhhcc-CCccceeee-ehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT---PDLTTLGKIIG-GGLPVGAYG-GRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~---~di~s~sK~~~-~G~~iG~v~-~~~~~~~~~~~~~~~~~ 237 (368)
++|+++|++||+++|+||+|+++ +.+........+.. ..+.|+||.++ +|+|+||++ .++++++.+....
T Consensus 167 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~---- 242 (361)
T 3ftb_A 167 IHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ---- 242 (361)
T ss_dssp HHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS----
T ss_pred HHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC----
Confidence 99999999999999999999888 43112222222222 23458999999 899999997 8999988887432
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.+++.|+++++++.++++ ++++.++.+++.+..++.+.+.+.+.+... ...+.+.++++.+..
T Consensus 243 -~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 306 (361)
T 3ftb_A 243 -NPWNINCFAEMAAINCLK---DTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLEN------------ 306 (361)
T ss_dssp -CTTCSCHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSEEEEEESS------------
T ss_pred -CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeEEEEEcCC------------
Confidence 356789999998887776 233445555555555666666555554333 556667787876631
Q ss_pred ccHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..++.+.|.++||.+.++.. ..+|+++. +.++++++++.|+++.+.
T Consensus 307 --~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 307 --ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp --SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHhc
Confidence 2247899999999999998642 23455544 788889999999888765
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=240.22 Aligned_cols=325 Identities=13% Similarity=0.088 Sum_probs=209.6
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC----C---CC-CeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV----P---SI-EMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.++ .+|.+++++.+++.+...+++ +.....++++.+++++ + ++ +++++++||++|+..+++.+ ..+++
T Consensus 48 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~--~~~gd 124 (412)
T 2x5d_A 48 DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT--LDHGD 124 (412)
T ss_dssp CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH--CCTTC
T ss_pred CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh--CCCCC
Confidence 344 678999999888765322222 3444567777777766 4 34 69999999999999999876 34678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++..++|++....+.. .|..+...+.....++ . .|+++++++++ ++++++++...++++|.+
T Consensus 125 ~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~---------~---~d~~~l~~~i~---~~~~~v~l~~p~nptG~~ 188 (412)
T 2x5d_A 125 TILVPNPSYPIHIYGAVI-AGAQVRSVPLVPGIDF---------F---NELERAIRESI---PKPRMMILGFPSNPTAQC 188 (412)
T ss_dssp EEEEEESCCHHHHHHHHH-HTCEEEEEECSTTSCH---------H---HHHHHHHHTEE---SCCSEEEEESSCTTTCCC
T ss_pred EEEEcCCCchhHHHHHHH-cCCEEEEeecCCccCC---------C---CCHHHHHHhcc---cCceEEEECCCCCCCCCc
Confidence 999999999986554433 3333221111110010 0 16788888876 345555554444556655
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-Cccccc----cCCCcchhhhhhhcc-CCccceeeeehHHHHHHh
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~ 229 (368)
. +.+++++|+++|++||+++|+||+|+++ +.|. ...... .+....+.|+||.++ +|+|+||+++++++++.+
T Consensus 189 ~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l 267 (412)
T 2x5d_A 189 V-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSAL 267 (412)
T ss_dssp C-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHH
Confidence 4 5566999999999999999999999887 5443 112222 233344678999999 899999999999988887
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.. .....+++.+++++.++.++++...+ +.+.++++++++++.+.|++. +.....+..+.++|+.+....
T Consensus 268 ~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~- 339 (412)
T 2x5d_A 268 AR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMVENPKASMYVWAKIPEPY- 339 (412)
T ss_dssp HH---HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCCCSBSSEEEEECCTTT-
T ss_pred HH---HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCeeeEEEEEcCCcc-
Confidence 63 33445678899999998888773211 223344445555555555543 333222233556777662110
Q ss_pred cccchhcccccHHHHHHHHHHHH-cCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|++ +||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 340 ---------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 340 ---------AHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp ---------GGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 00134678888875 6999998632 345776667999999999999998865
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=232.74 Aligned_cols=319 Identities=18% Similarity=0.218 Sum_probs=227.0
Q ss_pred ceeccC-CCcHHHHHHHHHHHHcCCC------C-CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILF-PSYLQVLAALGETMKKGTS------F-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g-~~~~~v~~a~~~~~~~~~~------~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.+++| +.+|++++++.+++.+... + +...+...+++++++++++..+ .+++++|++|+..+++.+ ..+
T Consensus 50 ~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~l~~~--~~~ 126 (399)
T 3tqx_A 50 ANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-TILYSSCFDANGGLFETL--LGP 126 (399)
T ss_dssp SCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHHHH--CCT
T ss_pred ccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-EEEECchHHHHHHHHHHh--cCC
Confidence 346788 6899999999998876211 1 2245678999999999987444 555557899999988766 345
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCC---CeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG---EIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~---~~~~~~~~~~~~ 151 (368)
++.|++..+.|.. ....+...+. +++.++..|++++++.+++..+ +++++++++.++
T Consensus 127 gd~v~~~~~~~~~-~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~n 186 (399)
T 3tqx_A 127 EDAIISDELNHAS-IIDGIRLCKA-------------------QRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFS 186 (399)
T ss_dssp TCEEEEETTCCHH-HHHHHHSCCS-------------------EEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred CCEEEECCcccHH-HHHHHHHcCC-------------------ceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 6677776655543 3333333333 2334444588899999886322 788999999888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCC--Ccchh--hhhhhccCCccceeeeehHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~--~~di~--s~sK~~~~G~~iG~v~~~~~~ 225 (368)
++|.+.+ +++|+++|++||+++|+||+| .++ ........+.+++ .+|++ |+||+++ |++.||+++++++
T Consensus 187 ptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~ 261 (399)
T 3tqx_A 187 MDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEI 261 (399)
T ss_dssp TTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHH
T ss_pred CCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHH
Confidence 8999888 999999999999999999999 454 2111123445554 56766 8999998 6788999999998
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
++.+....... ..+.+.++++++++.++++.+ .. +.+.++++++++++++.|++. +... ..+.++++++.+.
T Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~ 335 (399)
T 3tqx_A 262 IEWLRNRSRPY-LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL----GFQL-VPGNHPIIPVMLG 335 (399)
T ss_dssp HHHHHHHCHHH-HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCSSSEEEEEEE
T ss_pred HHHHHHhCcce-eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----CCCc-CCCCCCEEEEEeC
Confidence 88876422111 123467889999998888876 21 445677777777777777765 3322 2556777787763
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------Cccccc--cCCCHHHHHHHHHHHHHHHhhC
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~~~--~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|+++||.+.++.. ..+|++ ...+++++++++++|+++++++
T Consensus 336 -------------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 336 -------------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp -------------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 334568899999999999996532 234554 3679999999999999998763
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=230.13 Aligned_cols=309 Identities=13% Similarity=0.072 Sum_probs=212.6
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
+++ .+|++++++.+++.. ..+++.....+++++++++++ +.+++++++||+++++.+++.+ ..+++.|++..++
T Consensus 43 ~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~ 117 (363)
T 3ffh_A 43 PLG-TSKKVAAIQANSSVE--TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL--LDTTTNTVMATPT 117 (363)
T ss_dssp TTC-CCHHHHHHHHTCBSC--CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--CSTTCEEEEEESS
T ss_pred CCC-CCHHHHHHHHHHHHH--hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH--ccCCCEEEEcCCC
Confidence 444 678999999887654 234456667899999999998 6789999999999999999876 3567899999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|++....... .|..+...+... .+.. |++++++.++ ++++++++++.++++|.+.+ .+.+.
T Consensus 118 ~~~~~~~~~~-~g~~~~~v~~~~-~~~~-------------d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~-~~~l~ 178 (363)
T 3ffh_A 118 FVQYRQNALI-EGAEVREIPLLQ-DGEH-------------DLEGMLNAID---EKTTIVWICNPNNPTGNYIE-LADIQ 178 (363)
T ss_dssp CHHHHHHHHH-HTCEEEEEECCT-TSCC-------------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-HHHHH
T ss_pred hHHHHHHHHH-cCCEEEEecCCC-CCCc-------------CHHHHHHhcc---cCCCEEEEeCCCCCcCCCcC-HHHHH
Confidence 8875443333 333332222211 1111 8999999997 46888877777777787776 22255
Q ss_pred HHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcc----hhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccc
Q 017633 165 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~d----i~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
+++++|++ |+++|+||+|+++ + +...........++ +.|+||.++ +|+|+||+++++++++.+....
T Consensus 179 ~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~----- 251 (363)
T 3ffh_A 179 AFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR----- 251 (363)
T ss_dssp HHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC-----
T ss_pred HHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC-----
Confidence 55555555 9999999999988 5 43322211111122 568999999 8999999999999988887432
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+++.++++++++.++++ +.++.+..+++.+..++.+.+.+.+ .+.. ..+..+.++++.+..
T Consensus 252 ~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~------------- 314 (363)
T 3ffh_A 252 PPFNTTSIGQKLAIEAIK---DQAFIGECRTSNANGIKQYEAFAKRFEKVK-LYPANGNFVLIDLGI------------- 314 (363)
T ss_dssp CSCCCBHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHCTTCE-ECCCCSSEEEEECSS-------------
T ss_pred CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHhhCCCce-ECCCCCeEEEEECCC-------------
Confidence 366789999999988886 2234445555555555555555544 3332 345566777776521
Q ss_pred cHHHHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHH
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+..++.+.|.++||.+.++.. ..+|+++. +++|+++++++|++++
T Consensus 315 --~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 315 --EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp --CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 247899999999999998753 34566655 8999999999999864
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=236.47 Aligned_cols=316 Identities=11% Similarity=0.003 Sum_probs=211.5
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCC---ChhHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++ .+|.+++++.+++.....|+.+ .+...++++++.+.++ +.+++++++||++++..+++.+....+++.|
T Consensus 33 ~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~v 111 (376)
T 3ezs_A 33 PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTI 111 (376)
T ss_dssp CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEE
Confidence 3444 6789999998887543333321 2344445555544445 5789999999999999999877331117899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++..++|++...... ..|..+...+.....++ ++ ++++.+.. ++++++++..++++|.+.+
T Consensus 112 l~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~v~~~~p~nptG~~~~ 172 (376)
T 3ezs_A 112 AYPNPFYQIYEGAAK-FIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDLVILNSPNNPTGRTLS 172 (376)
T ss_dssp EEEESCCTHHHHHHH-HTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSEEEECSSCTTTCCCCC
T ss_pred EEecCCcHhHHHHHH-HcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCEEEEcCCCCCcCCCCC
Confidence 999999987654433 33333222111111111 22 44555552 4556666555555666554
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccc---------ccCCCcchhhhhhhcc-CCccceeeeehHHHHH
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE---------YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 227 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~---------~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~ 227 (368)
.+++++|+++|++||+++|+||+|.++ +.+...... ..+..+.+.|+||.++ +|+|+||+++++++++
T Consensus 173 -~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 251 (376)
T 3ezs_A 173 -LEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLE 251 (376)
T ss_dssp -HHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHH
T ss_pred -HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHH
Confidence 455999999999999999999999988 544332221 2444566779999997 8999999999999988
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
.+.. .....+++.++++++++.++++ .++..++.+++.+..++.+.+.+. ++. .+..+.++|+.+.
T Consensus 252 ~~~~---~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~~~~~~~---- 317 (376)
T 3ezs_A 252 KYKA---FRAYLGYTSANAIQKASEAAWL---DDRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFYVYLPVQ---- 317 (376)
T ss_dssp HHHH---HHTTTCCCCCHHHHHHHHHHHH---CSHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSEEEEECS----
T ss_pred HHHH---HHhhhcCCCChHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceEEEEECC----
Confidence 8763 3344567889999999888877 233445555555555555555443 322 4456677777652
Q ss_pred cccchhcccccHHHHHHHHHHHH-cCeeecCCCC--------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF--------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~--------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+..++++.|++ +||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 318 ------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 318 ------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred ------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 24788999988 8999987632 335676667999999999999999864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=238.79 Aligned_cols=321 Identities=10% Similarity=0.090 Sum_probs=216.3
Q ss_pred CcHHHHHHHHHHHHcCC--CCC---CCChhHHHHHHHHHhhCC-C--C-CeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP-S--I-EMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~--~~~---~~~~~~~~l~~~l~~~~~-~--~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|++++++.+++.+.. .|+ ...+...++++++++.++ + + +++++++||++|+..+++.+ ..+++.|++
T Consensus 54 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~ 131 (407)
T 3nra_A 54 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT--VARGDKVAI 131 (407)
T ss_dssp CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEE
T ss_pred CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEE
Confidence 67889999999887531 121 234577788888888776 2 3 79999999999999999765 356789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCC-----CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLP-----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
..++|++.... +...|..+...... ...... |++++++.+++ ++++++++..++++|.
T Consensus 132 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~---~~~~v~~~~p~nptG~ 194 (407)
T 3nra_A 132 VQPDYFANRKL-VEFFEGEMVPVQLDYVSADETRAGL-------------DLTGLEEAFKA---GARVFLFSNPNNPAGV 194 (407)
T ss_dssp EESCCTHHHHH-HHHTTCEEEEEEBCCCSSCCSSCCB-------------CHHHHHHHHHT---TCCEEEEESSCTTTCC
T ss_pred cCCcccchHHH-HHHcCCEEEEeecccccccCcCCCc-------------CHHHHHHHHhh---CCcEEEEcCCCCCCCc
Confidence 99888865433 33334333221110 011111 89999999984 4555555444566676
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-----CCCcchhhhhhhcc-CCccceeeeehHHHHH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 227 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~ 227 (368)
+. +.+++++|+++|++||+++|+||+|+++ +.+.. ...... +..+.+.|+||.++ +|+|+||+++++++++
T Consensus 195 ~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 273 (407)
T 3nra_A 195 VY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIA 273 (407)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHH
T ss_pred cc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHH
Confidence 55 5555999999999999999999999887 54432 222222 23345678999999 8999999999999888
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.+.. .....+++.++++++++.++++ ..+++.+...++.+..++.+.+.+.+. ++....+..+.++|+.+..
T Consensus 274 ~l~~---~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~-- 346 (407)
T 3nra_A 274 RMEK---LQAIVSLRAAGYSQAVLRGWFD--EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPK-- 346 (407)
T ss_dssp HHHH---HHHHHTSSSCHHHHGGGGGTTC--CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCC--
T ss_pred HHHH---HHhhhccCCChHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCC--
Confidence 8763 3344566778888777666554 123455555555666666666655555 3322223334565655421
Q ss_pred CcccchhcccccHHHHHHHHHHHH-cCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++.+.|++ +||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 347 ----------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 347 ----------LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp ----------BSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 12235788898876 5999998642 345677777999999999999999865
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=236.65 Aligned_cols=324 Identities=10% Similarity=-0.014 Sum_probs=213.4
Q ss_pred CcHHHHHHHHHHHHcCC-CCCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHHhcCCc--eEE
Q 017633 10 SYLQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARAFTGRE--RII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~~~~~~--~vi 79 (368)
.+|++++++.+++.... ..+.+.....++++.++++++ ..+++++|+||++++..+++.+....+++ .|+
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl 137 (437)
T 3g0t_A 58 APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTL 137 (437)
T ss_dssp CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEE
T ss_pred CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEE
Confidence 68899999999887533 222222223566666666553 47899999999999999998773114677 899
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|++....+... |..+...... ..++ . -|+++++++++. ++++++++...++++|.+.+.
T Consensus 138 ~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~---------~---~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~ 201 (437)
T 3g0t_A 138 FIDPGFNLNKLQCRIL-GQKFESFDLF-EYRG---------E---KLREKLESYLQT--GQFCSIIYSNPNNPTWQCMTD 201 (437)
T ss_dssp EEESCCHHHHHHHHHH-TCCCEEEEGG-GGCT---------T---HHHHHHHHHHTT--TCCCEEEEESSCTTTCCCCCH
T ss_pred EeCCCcHhHHHHHHHc-CCEEEEEeec-CCCC---------c---cCHHHHHHHHhc--CCceEEEEeCCCCCCCCcCCH
Confidence 9999998865444433 3322211111 0110 0 078999999942 355555543335556765554
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcccC---------ccccc-cCCCcchhhhhhhcc-CCccceeeeehHHHHH
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---------GAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 227 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~---------~~~~~-~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~ 227 (368)
+.+++|+++|++||++||+||+|+++ ..+.. ..... .+....+.|+||.++ +|+|+||+++++++++
T Consensus 202 -~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 280 (437)
T 3g0t_A 202 -EELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYE 280 (437)
T ss_dssp -HHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHH
T ss_pred -HHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhh
Confidence 44999999999999999999999877 43221 11111 333344668999999 8999999999998888
Q ss_pred -H-----------------hcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 228 -M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 228 -~-----------------~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
. +. ......+++.+++++.++.++++.... +...+...++.+..++.+.+.+.+.++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 357 (437)
T 3g0t_A 281 REYPDLEESFGRLRFGEALSS---SALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFN 357 (437)
T ss_dssp CBCGGGHHHHSCSBHHHHHHT---THHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred hhhhcccccccccchhHHHHH---HHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 6 55 233445678899999999999886532 1113344444444444444444434432
Q ss_pred eE------Ee-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------CccccccCC-CHHHH
Q 017633 289 IC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAH-SSDDI 354 (368)
Q Consensus 289 ~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~-~~~~i 354 (368)
.. .+ ..+.++|+.+. ..+..++.+.|+++||.+.++.. ..+|+++.. +++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i 423 (437)
T 3g0t_A 358 IVYDKDGNEPLADGFYFTVGYK--------------GMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQF 423 (437)
T ss_dssp ESSCEETTEECCSSSEEEEEET--------------TCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSSCGGGH
T ss_pred EeccccCCCCCceeEEEEEecC--------------CCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecCCHHHH
Confidence 22 13 45667777763 12357899999999999998753 345654444 89999
Q ss_pred HHHHHHHHHHHhh
Q 017633 355 QHTITAAEKVLRQ 367 (368)
Q Consensus 355 ~~~~~~l~~~l~~ 367 (368)
++++++|++++++
T Consensus 424 ~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 424 PDLEKRLQMLNAE 436 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=232.02 Aligned_cols=337 Identities=12% Similarity=0.026 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-ChhHHHHHHHHHhhC----C---CC-CeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAV----P---SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~----~---~~-~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|++++++.+++......+++ .....++++.+++++ + .+ +++++++||++++..+++.+ ..+++.|++
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~--~~~gd~vl~ 114 (410)
T 3e2y_A 37 PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL--VDPGDEVII 114 (410)
T ss_dssp CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH--CCTTCEEEE
T ss_pred CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh--cCCCCEEEE
Confidence 4678999999988753221222 222345555555543 2 34 79999999999999999876 356788999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
..++|++..... ...|..+....... ..+. ........ -|+++++++++ ++++++++++.++++|.+++
T Consensus 115 ~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~g~----~~~~~~~~-~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~ 185 (410)
T 3e2y_A 115 MVPFYDCYEPMV-RMAGAVPVFIPLRSKPTDGM----KWTSSDWT-FDPRELESKFS---SKTKAIILNTPHNPLGKVYT 185 (410)
T ss_dssp EESCCTTHHHHH-HHTTCEEEEEECEECCCCSS----CCBGGGEE-CCHHHHHTTCC---TTEEEEEEESSCTTTCCCCC
T ss_pred eCCCchhhHHHH-HHcCCEEEEEeccccccccc----cccccCCc-CCHHHHHhhcC---CCceEEEEeCCCCCCCcCcC
Confidence 999998765433 33333322211110 0000 00000000 17899998886 46888888777777777664
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~ 231 (368)
.+.+++|+++|++||+++|+||+|+++ +.+.. .....+ +....+.|+||.++ +|+|+||+++++++++.+.
T Consensus 186 -~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~- 263 (410)
T 3e2y_A 186 -RQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQ- 263 (410)
T ss_dssp -HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHH-
T ss_pred -HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHH-
Confidence 445999999999999999999999987 55432 222222 22345668999999 8999999999999888776
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHH-----HccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
......+++.+++++.++.++++. ...+.+.++..++.+..++.+.+.+.+.+.....+..+.++|+.+....
T Consensus 264 --~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 341 (410)
T 3e2y_A 264 --TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLG 341 (410)
T ss_dssp --HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGC
T ss_pred --HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhhh
Confidence 233456778899999999888874 1124455666666666666666666556655455566777787765321
Q ss_pred CcccchhcccccHHHHHHHHHHH-HcCeeecCCCC-----------CccccccCCCHHHHHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-----------EAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
. .... ...+.....+++..++ ++||.+.+++. ..+|+++..+++++++++++|++
T Consensus 342 ~-~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 342 A-DLSD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp C-CCTT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred c-cccc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 0 0000 0001122357777665 67999988643 23577888899999999999975
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=231.35 Aligned_cols=322 Identities=15% Similarity=0.074 Sum_probs=209.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+++.... ..++.. ..++++.+++++ + +.+++++++||++|+..+++.+ ..+++.|++..
T Consensus 45 ~~~~v~~a~~~~~~~~~-~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~ 120 (399)
T 1c7n_A 45 NPPELIEGLKKYLDETV-LGYTGP-TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIIT 120 (399)
T ss_dssp CCHHHHHHHHHHHHHCC-CSSBCC-CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECS
T ss_pred CCHHHHHHHHHHHhcCC-CCCCCC-cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcC
Confidence 57899999999886532 222322 556666666653 3 4679999999999999999876 24578999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++....+. ..|..+...+.....+ ... .|++++++.+++ ++++++++...++++|.+. +.++
T Consensus 121 p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~---~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~ 185 (399)
T 1c7n_A 121 PVYYPFFMAIK-NQERKIIECELLEKDG--------YYT---IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDE 185 (399)
T ss_dssp SCCTHHHHHHH-TTTCEEEECCCEEETT--------EEE---CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHH
T ss_pred CCcHhHHHHHH-HcCCEEEecccccCCC--------CEE---EcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHH
Confidence 99988654433 2333222211100000 000 189999999974 3577777655555567654 5666
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hccc-Cccccc-----cCCCcchhhhhhhcc-CCccceeeeeh-HHHHHHhcCCC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY-----FGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAG 233 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~-----~~~~~di~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~~ 233 (368)
+++|+++|++||++||+||+|+++ +.+. ...... .+....+.|+||.++ +|+|+||++++ +++++.+..
T Consensus 186 l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~-- 263 (399)
T 1c7n_A 186 LQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK-- 263 (399)
T ss_dssp HHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHH--
Confidence 999999999999999999999887 5443 222222 233345679999999 89999999886 668877763
Q ss_pred CccccccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEEeecc-ceEEEEeecCCCccc
Q 017633 234 PMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYIS-GMFGFFFTEGPVYNF 310 (368)
Q Consensus 234 ~~~~~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 310 (368)
.....++ +.++++++++.++++.. +++.++.++..+..++.+.+.+.+ .+......+.+ .++|+.+...
T Consensus 264 -~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----- 335 (399)
T 1c7n_A 264 -SRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL----- 335 (399)
T ss_dssp -HHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG-----
T ss_pred -HHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccC-----
Confidence 2222333 56889999888888642 233444444444444444444433 32111223334 4446665310
Q ss_pred chhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|+ ++||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 336 -------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 336 -------KMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKD 392 (399)
T ss_dssp -------CCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHH
Confidence 112467899998 68999998642 345777777789999999999998864
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=226.07 Aligned_cols=311 Identities=15% Similarity=0.099 Sum_probs=216.1
Q ss_pred ccCCCcHHHHHHHHHHHHcC--CCCCCCChhHHHHHHHHHhh------CC-CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKG--TSFGAPCLLENVLAEMVISA------VP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~l~~~l~~~------~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
+++ .+|++++++.+++.+. ....++.....++++.++++ ++ +.+++++++|++++++.+++.+ ..+++
T Consensus 41 ~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l--~~~gd 117 (369)
T 3cq5_A 41 PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAF--GGPGR 117 (369)
T ss_dssp CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--CSTTC
T ss_pred CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHh--cCCCC
Confidence 355 6889999999988652 11222333235788888887 55 5789999999999999999776 34678
Q ss_pred eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.|++..++|++..... ...|..+...+.. ... ..|++++++.++++ +++++++++.++++|.+
T Consensus 118 ~Vl~~~~~y~~~~~~~-~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~ 180 (369)
T 3cq5_A 118 TALGFQPSYSMHPILA-KGTHTEFIAVSRG--ADF------------RIDMDVALEEIRAK--QPDIVFVTTPNNPTGDV 180 (369)
T ss_dssp EEEEEESSCTHHHHHH-HHTTCEEEEEECC--TTS------------SCCHHHHHHHHHHH--CCSEEEEESSCTTTCCC
T ss_pred EEEEcCCChHHHHHHH-HHcCCEEEEecCC--cCC------------CCCHHHHHHHhhcc--CCCEEEEeCCCCCCCCC
Confidence 9999999998765433 3333333221111 110 01799999999842 46677777777778888
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcc-ccccC-CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~~~~~-~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
.+ ++++.++|+.+++++|+||+|+++ ....... .+.++ ..+.+.|+||.++ +|+|+||+++++++++.+...
T Consensus 181 ~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 256 (369)
T 3cq5_A 181 TS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLV 256 (369)
T ss_dssp CC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTT
T ss_pred CC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHc
Confidence 87 788888888889999999999887 3222111 12334 4456779999998 899999999999888888743
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
. .+++.++++++++.++++.... +...+++.++++++.+.|++ .++. ..+..++++++.+.
T Consensus 257 ~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~~~~-------- 318 (369)
T 3cq5_A 257 R-----LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE----LGYA-VVPSESNFVFFGDF-------- 318 (369)
T ss_dssp S-----CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH----HTCE-EECCSSSEEEEECC--------
T ss_pred C-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCE-ECCCCCeEEEEECC--------
Confidence 2 3456889999998888874211 33455566666666666655 3333 23455677777652
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCC-CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+..++.+.|.++||.+.+++ ...+|+++. +++|+++++++|++++.
T Consensus 319 -------~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 319 -------SDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -------SSHHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 124678899999999999874 234566655 89999999999999875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=230.46 Aligned_cols=325 Identities=13% Similarity=0.038 Sum_probs=209.0
Q ss_pred cCCCcHHHHHHHHHHHHcC-CCCCC-CCh-hHHHHHHHHHhhCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 7 LFPSYLQVLAALGETMKKG-TSFGA-PCL-LENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~-~~~~~-~~~-~~~~l~~~l~~~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
++ .+|++++++.+++... ..|.. ..+ ..+++++.+.+.++ +.+++++++||+++++.+++.+ ..+++.|++
T Consensus 40 ~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~ 116 (390)
T 1d2f_A 40 FA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVI 116 (390)
T ss_dssp SC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEE
T ss_pred CC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEE
Confidence 45 6789999999988653 22221 223 44444444444443 4679999999999999999866 245789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..++|++....+.. .|..+...+.....+ .+. .|++++++++++. +++++++...++++|.+.+.
T Consensus 117 ~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~--------~~~---~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~- 181 (390)
T 1d2f_A 117 HTPAYDAFYKAIEG-NQRTVMPVALEKQAD--------GWF---CDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTC- 181 (390)
T ss_dssp EESCCHHHHHHHHH-TTCEEEEEECEECSS--------SEE---CCHHHHHHHHTST--TEEEEEEESSCTTTCCCCCT-
T ss_pred cCCCcHHHHHHHHH-CCCEEEEeecccCCC--------ccc---cCHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCH-
Confidence 99999986544433 333322211110000 000 1899999999742 57777665555556766554
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-cccccCCC-cc-hhhhhhhcc-CCccceeeeeh-HHHHHHhcCCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVT-PD-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGP 234 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~~~~~~~-~d-i~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~~~ 234 (368)
+++++|+++|++||+++|+||+|+++ +.|... ....+... .| +.|+||.++ +|+|+||++++ +++++.+..
T Consensus 182 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~--- 258 (390)
T 1d2f_A 182 DELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS--- 258 (390)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHH---
Confidence 55999999999999999999999887 544321 22112111 12 889999999 89999999884 777777652
Q ss_pred ccc-cccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-c-CCceEEeecc-ceEEEEeecCCCcc
Q 017633 235 MYQ-AGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-A-GHAICGGYIS-GMFGFFFTEGPVYN 309 (368)
Q Consensus 235 ~~~-~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (368)
... ..++ +.++++++++.++++.. +++.++.++..+..++.+.+.+.+ . +.. ...+.+ .++|+.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~---- 331 (390)
T 1d2f_A 259 ALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDLRPL---- 331 (390)
T ss_dssp HHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEECGGG----
T ss_pred HHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-EecCCccEEEEEEcccc----
Confidence 222 3444 77899998888888742 223444444444444444444433 3 222 223333 4456665310
Q ss_pred cchhcccccHHHHHHHHHHH-HcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 310 FEDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|+ ++||.+.++.. ..+|+++..+++++++++++|++++.+
T Consensus 332 --------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 332 --------NIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp --------CCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 012467899999 58999988642 346777777899999999999998865
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=229.74 Aligned_cols=313 Identities=16% Similarity=0.068 Sum_probs=207.0
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
+++| .+|++++++.+++.....| +.....++++.++++++ +.+++++++||++++..+++.+ +++.|++..+
T Consensus 34 ~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~----~gd~vl~~~p 106 (364)
T 1lc5_A 34 NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL----KPRRAMIVTP 106 (364)
T ss_dssp CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH----CCSEEEEEES
T ss_pred CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc----CCCeEEEeCC
Confidence 3466 6789999999887653333 44457899999999987 6789999999999999999876 3489999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCC-HHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
+|++....... .|..+...+.....++ + ++++.+.++ ++++++++...++++|.+. +.++
T Consensus 107 ~y~~~~~~~~~-~g~~~~~v~~~~~~~~--------------~~l~~~~~~~~---~~~~~v~i~~p~nptG~~~-~~~~ 167 (364)
T 1lc5_A 107 GFAEYGRALAQ-SGCEIRRWSLREADGW--------------QLTDAILEALT---PDLDCLFLCTPNNPTGLLP-ERPL 167 (364)
T ss_dssp CCTHHHHHHHH-TTCEEEEEECCGGGTT--------------CCCTTHHHHCC---TTCCEEEEESSCTTTCCCC-CHHH
T ss_pred CcHHHHHHHHH-cCCeEEEEeCCccccc--------------chhHHHHHhcc---CCCCEEEEeCCCCCCCCCC-CHHH
Confidence 99986544333 3333222111100111 1 233333332 3455555433345566554 5666
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cc-ccccCCCcchhhhhhhcc-CCccceeee-ehHHHHHHhcCCCCccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGVTPDLTTLGKIIG-GGLPVGAYG-GRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~-~~~~~~~~di~s~sK~~~-~G~~iG~v~-~~~~~~~~~~~~~~~~~ 237 (368)
+++|+++|++||+++|+||+|+++ +.+.. .. .+..+....+.|+||.++ +|+|+||++ +++++++.+...
T Consensus 168 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~----- 242 (364)
T 1lc5_A 168 LQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQ----- 242 (364)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHh-----
Confidence 999999999999999999999887 43321 11 122334445679999999 899999998 899988877632
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
..+++.|+++++++.++++. .++.++.++..+..++.+.+.+.+.+.....++.+.++++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~------------- 306 (364)
T 1lc5_A 243 QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCER------------- 306 (364)
T ss_dssp SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESC-------------
T ss_pred CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEEECCC-------------
Confidence 13567899999888777752 23444555555555555555554443222334556677776521
Q ss_pred cHHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...++.+.|+++||.+.++.. ..+|+++. ++++++++++.|++++++
T Consensus 307 --~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 307 --EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp --TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC--
T ss_pred --cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhc
Confidence 124688889999999998742 23455543 688899999999988754
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=240.25 Aligned_cols=327 Identities=14% Similarity=0.078 Sum_probs=210.2
Q ss_pred cHHH--HHHHHHHHHc-CCCCCCCChhHHHHHHHHHhhC-----C-CCCe---EEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 11 YLQV--LAALGETMKK-GTSFGAPCLLENVLAEMVISAV-----P-SIEM---VRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 11 ~~~v--~~a~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-----~-~~~~---v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
+|.+ ++++.+++.. ....+.+.....++++.+++++ + ++++ +++|+||++|+..+++.+ ..+++.|
T Consensus 63 ~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l--~~~gd~V 140 (430)
T 2x5f_A 63 KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLF--VNQDDTI 140 (430)
T ss_dssp ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHH--CCTTCEE
T ss_pred chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHH--hCCCCEE
Confidence 4555 7777665543 2222223334678888888877 5 5677 999999999999999876 3467899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++..++|++....+....|..+...+....... .|++++++++++++.+++++++...+|++|.+ .
T Consensus 141 l~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~-~ 206 (430)
T 2x5f_A 141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGH-------------YTTDSLVEALQSYNKDKVIMILNYPNNPTGYT-P 206 (430)
T ss_dssp EEESSCCTHHHHHHTTTTCCEEEEECCBCTTSC-------------BCSHHHHHHHHHCCSSEEEEEECSSCTTTCCC-C
T ss_pred EEcCCcCccHHHHHHHhcCCeEEEEeccCccCC-------------cCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCc-C
Confidence 999999988644333203332222111110111 17899999998643466765555445556655 5
Q ss_pred CHHHHHHHHHHHHH-----hCCEEEEehhhhch-hcccC-ccc--cc---cCC---Ccchhhhhhhcc-CCccceeeee-
Q 017633 159 KPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYG-GAQ--EY---FGV---TPDLTTLGKIIG-GGLPVGAYGG- 221 (368)
Q Consensus 159 ~~~~l~~i~~l~~~-----~~~~li~De~~~~~-~~g~~-~~~--~~---~~~---~~di~s~sK~~~-~G~~iG~v~~- 221 (368)
+.+++++|+++|++ ||+++|+||+|+++ +.+.. ... .. .+. ...+.|+||.++ +|+|+||+++
T Consensus 207 ~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~ 286 (430)
T 2x5f_A 207 THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFG 286 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEB
T ss_pred CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEe
Confidence 56669999999999 99999999999887 54431 121 11 222 233568999998 8999999999
Q ss_pred --hHHHHHHhcCCCC-ccccccCCCCHHHHHHHHHHHH-HHc-cCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 017633 222 --RRDIMEMVAPAGP-MYQAGTLSGNPLAMTAGIHTLK-RLK-EPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGY 293 (368)
Q Consensus 222 --~~~~~~~~~~~~~-~~~~~t~~~~~~~~~a~~~~l~-~~~-~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 293 (368)
++++++.+..... ..+..+++.++++++++.++++ ... .+. ..++++++++.+.+.|++.+...+.....+.
T Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~ 366 (430)
T 2x5f_A 287 TSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFN 366 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCC
T ss_pred cCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCC
Confidence 8888887763110 0111567889999999888886 320 011 2333444444444444321102332222223
Q ss_pred ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 294 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.++|+.+. ..+..++++.|++ +||.+.+++...+|+++. .+++++++++++|++++++
T Consensus 367 ~g~~~~~~~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 367 SGYFMAIKVH--------------DVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp BSSEEEEEES--------------SSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCC--------------CCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 3445777763 1124688999998 899999985556777655 7999999999999999865
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=228.63 Aligned_cols=305 Identities=16% Similarity=0.116 Sum_probs=208.3
Q ss_pred CcHHHHHHHHHHHHcC--CCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 10 SYLQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
.+|++++++.+++... ..++++.....+++++++++++ +.+++++++||++|+..+++.+ ..++|.|++..++|+
T Consensus 40 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l--~~~gd~Vl~~~p~~~ 117 (360)
T 3hdo_A 40 PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF--AAEGEEIGYVHPSYS 117 (360)
T ss_dssp CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCT
T ss_pred CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH--hCCCCEEEEcCCChH
Confidence 6789999999988763 1233444456899999999987 6789999999999999999866 346789999999998
Q ss_pred CCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 87 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
+........ |..+...+. .... +++++ .+.. ++++++++..++++|.+.+ ++++
T Consensus 118 ~~~~~~~~~-g~~~~~v~~--~~~~--------------~~~~l---~~~~--~~~~v~i~~p~nptG~~~~----~~~l 171 (360)
T 3hdo_A 118 YYGTLAEVQ-GARVRTFGL--TGDF--------------RIAGF---PERY--EGKVFFLTTPNAPLGPSFP----LEYI 171 (360)
T ss_dssp HHHHHHHHH-TCEEEEECB--CTTS--------------SBTTC---CSSB--CSSEEEEESSCTTTCCCCC----HHHH
T ss_pred HHHHHHHHC-CCEEEEeeC--CCCC--------------CHHHH---Hhhc--CCCEEEEeCCCCCCCCCcC----HHHH
Confidence 765443333 332222111 1111 12112 1111 2335555555667888888 8899
Q ss_pred HHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
.++|+++|+++|+||+|++| ..+.....+..+....+.|+||.++ +|+|+||+++++++++.+.... .+++.+
T Consensus 172 ~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-----~~~~~~ 246 (360)
T 3hdo_A 172 DELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR-----DHYNLD 246 (360)
T ss_dssp HHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS-----CSCCSC
T ss_pred HHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC-----CCCCCC
Confidence 99999999999999999887 3222222233344455679999998 8999999999999988876322 346789
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
+++++++.++++. .++.++..++.+..++.+.+.+.+.+.. ...+.+.++++.+. ..+..++
T Consensus 247 ~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~l 308 (360)
T 3hdo_A 247 RLAQAACVAALRD---QAYLSECCRRIRETREWFTTELRSIGYD-VIPSQGNYLFATPP--------------DRDGKRV 308 (360)
T ss_dssp HHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCE-ECCCSSSEEEEECT--------------TCCHHHH
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCCCE-EcCCCccEEEEECC--------------CCCHHHH
Confidence 9999998888873 2233444444444444444444444433 34556677776542 1235788
Q ss_pred HHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 325 YRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.+.|.++||.+++++. ..+|+++. +++|+++++++|+++-+
T Consensus 309 ~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 309 YDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp HHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 9999999999998753 34566655 89999999999998753
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=226.66 Aligned_cols=312 Identities=13% Similarity=0.080 Sum_probs=214.8
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++ .+|++++++.+++.....| +.....+++++++++++ +.+++++++||++++..+++.+ ..+++.|++..+
T Consensus 40 ~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~ 114 (365)
T 3get_A 40 NPFG-TPPKAIECLRQNANKAHLY--PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK--LNSKNAFLQAGV 114 (365)
T ss_dssp CTTC-SCHHHHHHHHHHGGGTTSC--CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSS
T ss_pred CCCC-CCHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 3444 6789999999988754333 33333799999999987 6789999999999999999876 346789999988
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|++....+. ..|..+...+.....+ . |+++++++++ +++++++++..++++|.+.+.+ .+
T Consensus 115 ~~~~~~~~~~-~~g~~~~~v~~~~~~~-~-------------d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~-~l 175 (365)
T 3get_A 115 TFAMYEIYAK-QCGAKCYKTQSITHNL-D-------------EFKKLYETHK---DEIKLIFLCLPNNPLGECLDAS-EA 175 (365)
T ss_dssp CCTHHHHHHH-HHTCEEEECSSSSCCH-H-------------HHHHHHHHTT---TTEEEEEEESSCTTTCCCCCHH-HH
T ss_pred ChHHHHHHHH-HcCCEEEEEecCCCCC-C-------------CHHHHHHHhC---CCCCEEEEcCCCCCCCCCcCHH-HH
Confidence 8876544333 3343332221101111 1 7899999987 4678777766666677766633 36
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-h--cccC-c-cc---cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-R--LAYG-G-AQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~--~g~~-~-~~---~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
++|+++| ++|+++|+||+|+++ . .+.. . .. +..+....+.|+||.++ +|+|+||+++++++++.+....
T Consensus 176 ~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~- 253 (365)
T 3get_A 176 TEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLR- 253 (365)
T ss_dssp HHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHS-
T ss_pred HHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhc-
Confidence 6777766 579999999999877 3 3321 1 11 12233345668999998 8999999999999888876322
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhc
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.+++.++++++++.++++. .++.++.+++.+..++.+.+.+.+.+.. ..++.+.++|+.+..
T Consensus 254 ----~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~~~~~~~~~~---------- 315 (365)
T 3get_A 254 ----APFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKHNIK-IIDSYTNFITYFFDE---------- 315 (365)
T ss_dssp ----CTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHTTCE-ECCCSSSEEEEECSS----------
T ss_pred ----CCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCE-ECCCCCeEEEEECCC----------
Confidence 3456889999998888762 2334444444444444444444444433 345556777776531
Q ss_pred ccccHHHHHHHHHHHHcCeeecCCC---CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 315 KSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~~~Gi~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
. +..++.+.|.++||.+.++. ...+|+++. +++|+++++++|++++
T Consensus 316 ---~-~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 316 ---K-NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ---S-CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ---C-CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 1 35789999999999999886 345666655 8999999999999886
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=230.56 Aligned_cols=298 Identities=13% Similarity=0.139 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHhhCC-C---------CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccc
Q 017633 33 LLENVLAEMVISAVP-S---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 102 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~---------~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 102 (368)
++..++++++.+.++ . .+++++|+|+++++..+++.+ ..+++.|++..++|++....+ ...|..+..
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~ 158 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQSL-HPLGCNIIN 158 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHHH-GGGTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHHH-HHcCCEEEE
Confidence 445555555555444 2 269999999999999999876 346789999999998864433 333333221
Q ss_pred cCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---------CCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHH
Q 017633 103 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKE 172 (368)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---------~~~~~~~~~~~~~~-~g~~~~~~~~l~~i~~l~~~ 172 (368)
..... .++ |+++|++++++.+ +++++++++|+.+| +|.+ .+.+++++|+++|++
T Consensus 159 v~~~~-~~~--------------d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 159 VASDE-SGI--------------VPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARK 222 (425)
T ss_dssp ECEET-TEE--------------CHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHH
T ss_pred eCcCC-CCC--------------CHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHH
Confidence 11110 111 7999999997421 35778877665544 5554 556669999999999
Q ss_pred hCCEEEEehhhhch-hcccC-cc---ccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHH
Q 017633 173 NGALLIFDEVMTGF-RLAYG-GA---QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247 (368)
Q Consensus 173 ~~~~li~De~~~~~-~~g~~-~~---~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 247 (368)
||+++|+||+|+++ +.+.. .. .+..+....+.||||.+++|+|+||+++++++++.+.. .....+++.++++
T Consensus 223 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~---~~~~~~~~~~~~~ 299 (425)
T 2r2n_A 223 YDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVIL---HIQVSTLHPSTFN 299 (425)
T ss_dssp TTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHH---HHHTTTCSSCHHH
T ss_pred cCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHH---HHHHhcCCCCHHH
Confidence 99999999999987 54431 12 22223345567999999999999999999998887762 3344567889999
Q ss_pred HHHHHHHHHHHccC---CH----HHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 248 MTAGIHTLKRLKEP---GT----YEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 248 ~~a~~~~l~~~~~~---~~----~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
+.++.++++.+.++ ++ .++++++++.+.+.|++.+ .+.. ...+..+.++|+.+... .
T Consensus 300 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~p~~g~~~~~~~~~~-------------~ 364 (425)
T 2r2n_A 300 QLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL--TGLAEWHVPAAGMFLWIKVKGI-------------N 364 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSSEEECCCSBSSEEEEEETTC-------------S
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCeEEeCCCceEEEEEEeCCC-------------C
Confidence 99988888753221 22 2333344444444444321 0221 12345567788877321 1
Q ss_pred HHHH-HHHHHHHcCeeecCCCC---------CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 320 KFAR-FYRGMLEEGVYFAPSQF---------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 320 ~~~~-~~~~l~~~Gi~~~~~~~---------~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
+..+ +.+.|.++||.+.++.. ..+|+++. .+++++++++++|++++++
T Consensus 365 ~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 DVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp CCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1234 57788899999988632 34566655 7999999999999998865
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=234.03 Aligned_cols=323 Identities=14% Similarity=0.049 Sum_probs=208.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+++.+....+.+.....++++.+++++ + +.+++++++||++|+..+++.+ ..+++.|++..
T Consensus 55 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~Vl~~~ 132 (406)
T 1xi9_A 55 PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL--LDPGDEILVPG 132 (406)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh--CCCCCEEEEcC
Confidence 4688999999988764322222223455566655554 2 4689999999999999999876 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++....+ ...|..+...+.....++ . -|+++|++.++ ++++++++++.++++|.++ +.++
T Consensus 133 ~~~~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~ 195 (406)
T 1xi9_A 133 PSYPPYTGLV-KFYGGKPVEYRTIEEEDW---------Q---PDIDDIRKKIT---DRTKAIAVINPNNPTGALY-DKKT 195 (406)
T ss_dssp SCCHHHHHHH-HHTTCEEEEEEEEGGGTS---------E---ECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHH
T ss_pred CCCccHHHHH-HHcCCEEEEeecCCCcCC---------c---CCHHHHHHhhC---cCceEEEEECCCCCCCCCc-CHHH
Confidence 9998754433 233332221111100010 0 17999999987 3677777776666677655 4556
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccC--C-Ccchhhhhhhcc-CCccceeee--ehH----HHHHHhcC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--V-TPDLTTLGKIIG-GGLPVGAYG--GRR----DIMEMVAP 231 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~--~-~~di~s~sK~~~-~G~~iG~v~--~~~----~~~~~~~~ 231 (368)
+++|+++|++||+++|+||+|+++ +.+.......++ . ...+.|+||.++ +|+|+||++ +++ ++++.+..
T Consensus 196 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~ 275 (406)
T 1xi9_A 196 LEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDR 275 (406)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHH
Confidence 999999999999999999999887 533223333332 1 222348999998 799999998 888 88887763
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
..... ++.+++++.++.++++.. .++.+++.++.+..++.+.+.+.+. ++....+..+.++|+.+...
T Consensus 276 ---~~~~~-~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~----- 344 (406)
T 1xi9_A 276 ---LARIR-LCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG----- 344 (406)
T ss_dssp ---HHHHT-CCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSC-----
T ss_pred ---HHHhh-cCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCcc-----
Confidence 11222 577888888888888632 2223344444444444444444333 22111122244445454210
Q ss_pred chhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 311 EDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|+++++++
T Consensus 345 ------~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 345 ------PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp ------SCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred ------CCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 0123467888887 8899998864 23467766799999999999999998653
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=233.26 Aligned_cols=308 Identities=11% Similarity=0.061 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCcccc
Q 017633 33 LLENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 103 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 103 (368)
....+|++.++++++ +.+++++++||++|++.+++.+ ..+++.|++..++|++.........|.++...
T Consensus 86 ~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~ 163 (435)
T 3piu_A 86 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPI 163 (435)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred CCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCEEEEe
Confidence 334566666666653 3789999999999999999877 34678899999888765433322334333221
Q ss_pred CCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 017633 104 GLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180 (368)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~D 180 (368)
......++. .|+++|++++++. ..+++++++++.++++|.+.+ .+.+++|+++|++||++||+|
T Consensus 164 ~~~~~~~~~------------~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~D 230 (435)
T 3piu_A 164 HCTSSNGFQ------------ITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT-RNELYLLLSFVEDKGIHLISD 230 (435)
T ss_dssp ECCGGGTSC------------CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEE
T ss_pred eCCCccCCc------------CCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEe
Confidence 111111100 1899999999751 236777777666666776555 445999999999999999999
Q ss_pred hhhhch-hcccCc-cccccC----CC-----cc----hhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCC
Q 017633 181 EVMTGF-RLAYGG-AQEYFG----VT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 181 e~~~~~-~~g~~~-~~~~~~----~~-----~d----i~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
|+|+++ +.+..+ ...... .+ +| +.|+||+++ +|+|+||+++ ++.+.+.+.. ...++..
T Consensus 231 ea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~ 305 (435)
T 3piu_A 231 EIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLV 305 (435)
T ss_dssp CTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCC
T ss_pred ccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCC
Confidence 999886 444322 111111 11 23 568999999 8999999988 5667666652 2234456
Q ss_pred CHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 244 NPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
++++++++.+.++...- +++.++.+++.+..++.+.+.+.+.++....+..+.++|+.+..... ........
T Consensus 306 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~ 378 (435)
T 3piu_A 306 SSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEM 378 (435)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS-------SSSHHHHH
T ss_pred CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccc-------cCCchhHH
Confidence 78888887776652210 11222333333333444444444445433333444788887743110 01112456
Q ss_pred HHHHHHHHc-CeeecCCCC------CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 323 RFYRGMLEE-GVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 323 ~~~~~l~~~-Gi~~~~~~~------~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
++.+.|+++ ||.+.++.. ..+|+++.. +++++++++++|++++++
T Consensus 379 ~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 379 ELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 888999887 999998642 335665555 999999999999999864
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=227.05 Aligned_cols=313 Identities=15% Similarity=0.071 Sum_probs=218.3
Q ss_pred ceeccCC-CcHHHHHHHHHHHHcCC-C------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFP-SYLQVLAALGETMKKGT-S------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~-~~~~v~~a~~~~~~~~~-~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.+++|+ .+|++++++.+++.+.. . .....+...+++++++++++.. ..+++++|++++..+++.+ ..+
T Consensus 66 s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~~i~~~sGt~a~~~~l~~~--~~~ 142 (409)
T 3kki_A 66 SNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFD-ECLLSQSGWNANVGLLQTI--CQP 142 (409)
T ss_dssp CSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHH--CCT
T ss_pred ccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCC-eEEEecchHHHHHHHHHHh--cCC
Confidence 3456666 68999999999998721 1 1123356778999999988643 4566678999999998766 346
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+|.|++..+.| +.....+...+.. ++.++..|+++++++++++ ++++++++++++++|
T Consensus 143 gd~Vl~~~~~~-~~~~~~~~~~g~~-------------------~~~~~~~d~~~le~~l~~~--~~~~vi~~~~~nptG 200 (409)
T 3kki_A 143 NTNVYIDFFAH-MSLWEGARYANAQ-------------------AHPFMHNNCDHLRMLIQRH--GPGIIVVDSIYSTLG 200 (409)
T ss_dssp TCEEEEETTSC-HHHHHHHHHTTCE-------------------EEEECTTCHHHHHHHHHHH--CSCEEEEESBCTTTC
T ss_pred CCEEEECCCcC-HHHHHHHHHcCCe-------------------EEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCC
Confidence 67777766554 4334444443332 2233334899999999853 468999999999899
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhc--h-hcccCccccccCC--Ccch--hhhhhhccCCccceeeeehHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL--TTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--~-~~g~~~~~~~~~~--~~di--~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
.+.+ +++|+++|++||++||+||+|++ + +.|..+ ...++. .+|+ .|+||++++| .||+++++++++
T Consensus 201 ~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~~~~~ 273 (409)
T 3kki_A 201 TIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGL-LAELGLTREVHFMTASLAKTFAYR--AGAIWCNNEVNR 273 (409)
T ss_dssp CBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCSS--CEEEEESSSGGG
T ss_pred CcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcc-hhhcCCCCCCCEEEeecchhhCCC--ceEEEECHHHHH
Confidence 8888 99999999999999999999976 4 334332 234444 3455 6899999965 589999888777
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 228 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 228 ~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.+........ .+.+.++++++++.++++.+.+ +.+.++++++++++++.|+++ ++. +.+.+.++++.+.
T Consensus 274 ~~~~~~~~~~-~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~--~~~~~~~~~~~~~--- 343 (409)
T 3kki_A 274 CVPFISYPAI-FSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL----GLT--IRSESQIIGLETG--- 343 (409)
T ss_dssp THHHHCHHHH-HSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----TCC--CCCSSSEEEEEEE---
T ss_pred HHHHhCcCcc-ccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCc--cCCCCCEEEEEeC---
Confidence 6653221111 2234688888899899987754 345666777777777777654 332 2246777787763
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCC-------CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++++.|+++||.+.+.. ...+|+ +..++++++++++++|++++++
T Consensus 344 ----------~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 344 ----------DERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ----------SHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 33446789999999999996542 223454 4457999999999999999864
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=233.64 Aligned_cols=322 Identities=12% Similarity=0.078 Sum_probs=206.9
Q ss_pred CcHHHHHHHHHHHHc-----CCCCCCCChhHHHHHHHHHhhC----C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 10 SYLQVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAV----P-SIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~----~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+|+|++++.+++.+ ....+.+.....+|++.+++++ + ..+++++++|+++++..+ ... ..++|.|+
T Consensus 83 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l--~~~gd~Vl 159 (449)
T 3qgu_A 83 LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM--FGSKPTVA 159 (449)
T ss_dssp CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH--HCSSSCEE
T ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH--hCCCCEEE
Confidence 577999999998874 2222234455778888888886 4 678999999999999988 333 25678999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|++........+..+.... . ...+++.++.++-+.+...+.+. +++++++++..+|++|.+. +
T Consensus 160 ~~~p~~~~~~~~~~~~g~~g~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~p~NPtG~~~-~ 227 (449)
T 3qgu_A 160 VQDPSYPVYVDTSVMMGMTGDHNG-T---------GFDGIEYMVCNPDNHFFPDLSKA-KRTDIIFFCSPNNPTGAAA-T 227 (449)
T ss_dssp EEESCCTHHHHHHHHHTCSCCBCS-S---------SBTTEEEEECCGGGTTCCCGGGC-CCCSEEEEESSCTTTCCCC-C
T ss_pred EcCCCChhHHHHHHHcCCcccccc-c---------ccceeEEEecccccCCcCChhHc-CCCCEEEEeCCCCCCCCcC-C
Confidence 999999887655544443311000 0 00011222221110110011111 3556666655555566655 5
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hccc-Ccccccc----CCCcchhhhhhhcc-CCccceeeeehHHHHH-----
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIME----- 227 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~----- 227 (368)
.+++++|+++|++||+++|+||+|+++ +.+. ......+ +..+.+.|+||+++ +|+|+||+++++++++
T Consensus 228 ~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 307 (449)
T 3qgu_A 228 RAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEP 307 (449)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCB
T ss_pred HHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhh
Confidence 555999999999999999999999988 5442 2222222 23345679999999 8999999999877654
Q ss_pred ---HhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 228 ---MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 228 ---~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
.+. ......+++++++++.++.++++.... +++.+++.++++++++.|++ .++....+..+.++|+.
T Consensus 308 ~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~ 380 (449)
T 3qgu_A 308 VHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE----MGFSVYGGDDAPYIWVG 380 (449)
T ss_dssp HHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCEEESSSSSEEEEE
T ss_pred HHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCeeeCCCCeeEEEEE
Confidence 222 112234447789999988888764211 23445555555555555554 35443434456777777
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+. ..+..++++.|+++ ||.+.++.. ..+|+++..+++++++++++|++++.+
T Consensus 381 ~~--------------~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 381 FP--------------GKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp CT--------------TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred CC--------------CCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 62 11246788888876 999998642 346777778999999999999998853
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=223.98 Aligned_cols=318 Identities=19% Similarity=0.225 Sum_probs=222.9
Q ss_pred ceeccCC-CcHHHHHHHHHHHHc-CCCCC---C---CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 3 QLIILFP-SYLQVLAALGETMKK-GTSFG---A---PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 3 ~~~~~g~-~~~~v~~a~~~~~~~-~~~~~---~---~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
+.+++|+ .+|++++++.+++.. ...++ + ..+...++++.++++++-. +.+++++|++++..+++.+ ..+
T Consensus 52 ~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~~~~~--~~~ 128 (401)
T 1fc4_A 52 ANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME-DAILYSSCFDANGGLFETL--LGA 128 (401)
T ss_dssp CSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHTTHHHH--CCT
T ss_pred ccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHH--cCC
Confidence 3467886 799999999998876 22111 1 2567899999999999733 4556668999999988766 345
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCC---CeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG---EIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~---~~~~~~~~~~~~ 151 (368)
++.|++..+. |+.....+...|. +++.++..|++++++.+++..+ +++++++++.++
T Consensus 129 gd~v~~~~~~-~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~n 188 (401)
T 1fc4_A 129 EDAIISDALN-HASIIDGVRLCKA-------------------KRYRYANNDMQELEARLKEAREAGARHVLIATDGVFS 188 (401)
T ss_dssp TCEEEEETTC-CHHHHHHHHTSCS-------------------EEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEET
T ss_pred CCEEEEcchh-HHHHHHHHHHcCC-------------------ceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcC
Confidence 6667666554 4433333332222 2333444589999999975212 578888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch-h-cccCccccccCCC--cchh--hhhhhccCCccceeeeehHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGVT--PDLT--TLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~-~-~g~~~~~~~~~~~--~di~--s~sK~~~~G~~iG~v~~~~~ 224 (368)
++|.+.+ +++|.++|++||+++|+||+|+ ++ . .+..+ ...+++. .|++ |+||.++++. .||++++++
T Consensus 189 ptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~ 262 (401)
T 1fc4_A 189 MDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKE 262 (401)
T ss_dssp TTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHH
T ss_pred CCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHH
Confidence 8898888 9999999999999999999994 77 3 33321 2223332 3554 8999996554 499999999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
+++.+...... ...+++.++++++++.++++.+.. +++.++++++++++++.|++. +... .+..++++++.+.
T Consensus 263 ~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~ 336 (401)
T 1fc4_A 263 VVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA----GFTL-AGADHAIIPVMLG 336 (401)
T ss_dssp HHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT----TCCB-CCSSSSEEEEEEE
T ss_pred HHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcc-cCCCCCEEEEEcC
Confidence 88877632211 223557899999999999987753 346677777777777777764 3322 2456778888762
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-------ccccc--cCCCHHHHHHHHHHHHHHHhhC
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------AGFTS--LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-------~~~~~--~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+..+..++.+.|.++||.+.++..+ .+|++ ..++++++++++++|+++++++
T Consensus 337 -------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 337 -------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------------ChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2345678999999999999986432 34554 3479999999999999998753
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=228.47 Aligned_cols=302 Identities=13% Similarity=0.074 Sum_probs=194.2
Q ss_pred HHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCC
Q 017633 35 ENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 105 (368)
Q Consensus 35 ~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (368)
..++++.++++++ +.+++++++|++++++.+++.+. .+++.|++..++|++.........|..+...+.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~ 162 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--DPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC 162 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--CTTCEEEEESSCCTTHHHHTTTTTCCEEEEECC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC--CCCCeEEEccCCCcchHHHHHHhcCCEEEEeec
Confidence 4566666666542 36789999999999999998763 457899999999988543333233433322211
Q ss_pred CCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehh
Q 017633 106 PDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 182 (368)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~ 182 (368)
....++. .|++++++++++ ..++++++++.+.++++|.+. +.+++++|+++|++||++||+||+
T Consensus 163 ~~~~~~~------------~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea 229 (428)
T 1iay_A 163 ESSNNFK------------ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEI 229 (428)
T ss_dssp CTTTTTC------------CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECT
T ss_pred CCccCCc------------CCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEecc
Confidence 1111110 179999999874 223577666555455566654 667799999999999999999999
Q ss_pred hhch-hcccCc-ccccc-------CCCcc----hhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHHH
Q 017633 183 MTGF-RLAYGG-AQEYF-------GVTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLA 247 (368)
Q Consensus 183 ~~~~-~~g~~~-~~~~~-------~~~~d----i~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~ 247 (368)
|.++ +.+..+ ....+ +..+| +.|+||.++ +|+|+||+++ ++++++.+.. ...+++.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 304 (428)
T 1iay_A 230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQT 304 (428)
T ss_dssp TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHH
T ss_pred ccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHH
Confidence 9887 443221 21111 11245 568999998 8999999988 6778877762 12335678888
Q ss_pred HHHHHHHHHHHc---c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 248 MTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 248 ~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
+.++.++++... + +++.+++.++++++.+.|++ .+.....+..+.++|+.+..... .+......
T Consensus 305 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~ 373 (428)
T 1iay_A 305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV----VGIKCLKNNAGLFCWMDLRPLLR-------ESTFDSEM 373 (428)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCBCCCSSSSEEEEECGGGCS-------SSSHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccCCCeeEEEEEechhhcC-------CCchhHHH
Confidence 888777765221 0 12333444444555444444 34332222256677887632100 00112456
Q ss_pred HHHHHHHHc-CeeecCCCC------CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 323 RFYRGMLEE-GVYFAPSQF------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 323 ~~~~~l~~~-Gi~~~~~~~------~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
++++.|+++ ||.+.++.. ..+|+++. .+++++++++++|++++++
T Consensus 374 ~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 374 SLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 789999987 999998642 24566555 7999999999999999865
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=228.00 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHHcCC----CC-CCCChhHHHHHHHHHhhC----C-CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 9 PSYLQVLAALGETMKKGT----SF-GAPCLLENVLAEMVISAV----P-SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~----~~-~~~~~~~~~l~~~l~~~~----~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
..+|.|++++.+++.+.. .+ +.+.....+|++.+++++ + ..+++++++|+++++..+..++ .++|.|
T Consensus 69 ~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l~~l~---~~gd~V 145 (432)
T 3ei9_A 69 PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMF---GSNVTI 145 (432)
T ss_dssp CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHH---CTTCCE
T ss_pred CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHHHHHc---CCCCEE
Confidence 467899999999887521 12 223455677888888874 4 6789999999999998743333 578899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++..++|++...........+....... ...+++.++.++-..+...+.+. +++++++++..+|++|.+.+
T Consensus 146 l~~~p~y~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~-~~~~~v~l~~p~NPtG~~~~ 216 (432)
T 3ei9_A 146 AVQDPSYPAYVDSSVIMGQTGQFNTDVQ--------KYGNIEYMRCTPENGFFPDLSTV-GRTDIIFFCSPNNPTGAAAT 216 (432)
T ss_dssp EEEESCCTHHHHHHHHHTCSCCEETTTT--------EETTCEEEECCGGGTTSCCGGGC-CCCSEEEEESSCTTTCCCCC
T ss_pred EEeCCCCHHHHHHHHHcCCccccccccc--------ccCceEEeccCcccCCcCChhhC-CCCCEEEEeCCCCCCCCCCC
Confidence 9999999887555444433221100000 00011112211000000001111 34555555555555666554
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcccccc----CCCcchhhhhhhcc-CCccceeeeehHHH-------
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVGAYGGRRDI------- 225 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~----~~~~di~s~sK~~~-~G~~iG~v~~~~~~------- 225 (368)
.+++++|+++|++||++||+||+|.++ ..+.......+ +....+.|+||+++ +|+|+||+++++++
T Consensus 217 -~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~ 295 (432)
T 3ei9_A 217 -REQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFP 295 (432)
T ss_dssp -HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCB
T ss_pred -HHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHH
Confidence 455999999999999999999999988 44332222222 22344679999999 89999999988776
Q ss_pred -HHHhcCCCCccccccCCCCHHHHHHHHHHHHHH-cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 226 -MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 226 -~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~-~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
.+.+.. .....+++++++++.++.+++... .+ +++.++++++++++++.|++ .++....+..+.++|+.
T Consensus 296 ~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~ 368 (432)
T 3ei9_A 296 VAKDFNR---IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS----LGYDVYGGKNAPYVWVH 368 (432)
T ss_dssp HHHHHHH---HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCEEECSSSSEEEEE
T ss_pred HHHHHHH---HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH----CCceecCCCcceEEEEE
Confidence 555542 222334467888888888776421 11 23344555555555555554 34433333456677877
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC------CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+. ..+..+++..|+++ ||.+.++. ...+|+++..+++++++++++|++--
T Consensus 369 ~~--------------~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 369 FP--------------NQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLY 425 (432)
T ss_dssp CT--------------TSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CC--------------CCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 63 11246778887765 99998863 23467788889999999999998753
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=221.00 Aligned_cols=314 Identities=19% Similarity=0.194 Sum_probs=219.4
Q ss_pred ccCC-CcHHHHHHHHHHHHcCC-CC------CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 6 ILFP-SYLQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 6 ~~g~-~~~~v~~a~~~~~~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
++|+ .+|++++++.+++.... .+ ....+...++++++++.++ .+++++++||++|+..+++.+ ..+++.
T Consensus 53 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-~~~v~~~~ggt~a~~~~~~~~--~~~gd~ 129 (398)
T 3a2b_A 53 YLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG-KEAAILFSTGFQSNLGPLSCL--MGRNDY 129 (398)
T ss_dssp TTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHS--SCTTCE
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCE
Confidence 4566 78899999999886532 11 1235778899999999875 368999999999999999876 345677
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCC-CeEEEEEcccCCCCCcc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSGFI 156 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~-~~~~~~~~~~~~~~g~~ 156 (368)
|++..+.|... ...+...|.. ++.++..|++++++.+++..+ +++++++++.++++|.+
T Consensus 130 V~~~~p~~~~~-~~~~~~~g~~-------------------~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~ 189 (398)
T 3a2b_A 130 ILLDERDHASI-IDGSRLSFSK-------------------VIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDI 189 (398)
T ss_dssp EEEETTCCHHH-HHHHHHSSSE-------------------EEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCB
T ss_pred EEECCccCHHH-HHHHHHcCCc-------------------eEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCc
Confidence 87777665543 3444443332 233333489999999986432 67888888888888988
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc-cCccccccCCC--cchh--hhhhhccC-CccceeeeehHHHHHHh
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVT--PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g-~~~~~~~~~~~--~di~--s~sK~~~~-G~~iG~v~~~~~~~~~~ 229 (368)
.+ +++|+++|++||+++|+||+|+.+ ... .....+.++.. +|++ |+||.+++ | ||+++++++++.+
T Consensus 190 ~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l 262 (398)
T 3a2b_A 190 VN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFL 262 (398)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHH
T ss_pred cC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHH
Confidence 87 999999999999999999999654 211 11122334432 4555 89999983 5 9999999888877
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
.... .....+.+.++..++++.++++.+.. +++.++++++++++.+.|++. +... ..+.++++|+.+.
T Consensus 263 ~~~~-~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~g~~~~~~~~----- 331 (398)
T 3a2b_A 263 KHNA-RSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH----GFDL-GATESPILPIFIR----- 331 (398)
T ss_dssp HHHC-HHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT----TCCB-CSCCSSEEEEECC-----
T ss_pred HHhc-ccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc----CCCc-CCCCCCEEEEEcC-----
Confidence 6311 11223334566665566677776533 456777788888888887764 3222 2334677777752
Q ss_pred ccchhcccccHHHHHHHHHHHHcCeeecCCCC-------CccccccC--CCHHHHHHHHHHHHHHHhhC
Q 017633 309 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~~~~~--~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++.+.|+++||.+.++.. ..+|+++. ++++++++++++|++++.++
T Consensus 332 --------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 332 --------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp --------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 234567899999999999998743 23565544 59999999999999998653
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=233.34 Aligned_cols=330 Identities=11% Similarity=0.015 Sum_probs=207.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhCC-------------CCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-------------SIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------------~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
.+|++++++.+++......++ +.....++++.++++++ +.+++++++||++|+..+++.+ ..++
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l--~~~g 128 (416)
T 1bw0_A 51 TSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI--CDAG 128 (416)
T ss_dssp CCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh--CCCC
Confidence 568899999998876432222 23345566666666554 4689999999999999999876 3467
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+.|++..++|++.... +...|..+.........+. . .|++++++.++. +++++++...++++|.
T Consensus 129 d~vl~~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~---~~~~v~i~~p~nptG~ 192 (416)
T 1bw0_A 129 DYALVPQPGFPHYETV-CKAYGIGMHFYNCRPENDW---------E---ADLDEIRRLKDD---KTKLLIVTNPSNPCGS 192 (416)
T ss_dssp CEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGGTT---------E---ECHHHHHHHCCT---TEEEEEEESSCTTTCC
T ss_pred CEEEEcCCCcHhHHHH-HHHcCcEEEEeecCcccCC---------C---CCHHHHHHHhcc---CCeEEEEeCCCCCCCc
Confidence 8999999999886543 3333333221111000000 0 179999998873 4555544444555666
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc-----CccccccCC---Ccchhhhhhhcc-CCccceeeeehHH-
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGV---TPDLTTLGKIIG-GGLPVGAYGGRRD- 224 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-----~~~~~~~~~---~~di~s~sK~~~-~G~~iG~v~~~~~- 224 (368)
+. +.+++++|+++|++||++||+||+|.++ +.+. ......+.. ...+.|+||.++ +|+|+||++++++
T Consensus 193 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~ 271 (416)
T 1bw0_A 193 NF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPH 271 (416)
T ss_dssp CC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTT
T ss_pred cc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCch
Confidence 54 5667999999999999999999999887 5443 112222221 123458999997 7899999988653
Q ss_pred -HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEe
Q 017633 225 -IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFF 302 (368)
Q Consensus 225 -~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 302 (368)
+++.+..........+++.|+++++++.++++... +++.++..++.+..++.+.+.+.+. +.....+..+.++|+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 350 (416)
T 1bw0_A 272 GNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRI 350 (416)
T ss_dssp CSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEE
T ss_pred hhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeC
Confidence 33222200001112456789999999888887322 2233444444444555555554444 22212233466777766
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..... +...+..++++.|+ ++||.+.++.. ..+|+++..+++++++++++|++++++
T Consensus 351 ~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 351 DLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp CGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 32100 01123467888885 78999998742 346777778999999999999998864
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=229.28 Aligned_cols=318 Identities=14% Similarity=0.057 Sum_probs=201.5
Q ss_pred cHHHHHHHHHHHHc-CCCC-CCCChhHHHHHHHHHhhC-C------CCCeEEE--eCChHHHHHHHHHHHHHhcCC----
Q 017633 11 YLQVLAALGETMKK-GTSF-GAPCLLENVLAEMVISAV-P------SIEMVRF--VNSGTEACMGVLRLARAFTGR---- 75 (368)
Q Consensus 11 ~~~v~~a~~~~~~~-~~~~-~~~~~~~~~l~~~l~~~~-~------~~~~v~~--~~~gt~a~~~al~~~~~~~~~---- 75 (368)
+|.+++++.+.+.. ...+ +.+.....++++.+++++ + ..+++++ |+||++|++.+++++....++
T Consensus 50 ~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~ 129 (412)
T 1ajs_A 50 LPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNK 129 (412)
T ss_dssp CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred cHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCC
Confidence 37899999887732 1222 235556678888888877 3 3589999 999999999998655444566
Q ss_pred -ceEEEEcCCCCCCchhhhhhcCCC-ccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 76 -ERIIKFEGCYHGHADPFLVKAGSG-VATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 76 -~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
+.|++..++|++....... .|.. +...... ...... |++++++.++++.++++++++...+++
T Consensus 130 ~d~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~v~~~~p~np 195 (412)
T 1ajs_A 130 DTPVYVSSPTWENHNGVFTT-AGFKDIRSYRYWDTEKRGL-------------DLQGFLSDLENAPEFSIFVLHACAHNP 195 (412)
T ss_dssp CSCEEEEESCCTHHHHHHHH-TTCSCEEEEECEETTTTEE-------------CHHHHHHHHHHSCTTCEEEEESSSCTT
T ss_pred CCeEEEcCCCcHHHHHHHHH-cCCceeEEEeeecCCCCcc-------------CHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence 8999999999986544333 3333 2221110 001101 799999999864345666655555555
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc---cCccccccCCCcc----hhhhhhhccC-Cccceeeee--
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----LTTLGKIIGG-GLPVGAYGG-- 221 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g---~~~~~~~~~~~~d----i~s~sK~~~~-G~~iG~v~~-- 221 (368)
+|. ..+.+++++|+++|++||++||+||+|.++ +.+ .......+...+| +.|+||.+++ |+|+||+++
T Consensus 196 tG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~ 274 (412)
T 1ajs_A 196 TGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA 274 (412)
T ss_dssp TCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEec
Confidence 565 455666999999999999999999999988 543 2222322211122 5689999995 999999988
Q ss_pred -hHHH----HHHhcCCCCccccccCC-CCHHHHHHHHHHHHHHc------c--CCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 222 -RRDI----MEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK------E--PGTYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 222 -~~~~----~~~~~~~~~~~~~~t~~-~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
++++ ++.+.. ....+++ ++++++.++.++++... + +.+.++++++++++.+.|++.....+.
T Consensus 275 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 350 (412)
T 1ajs_A 275 KEPDSILRVLSQMQK----IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTW 350 (412)
T ss_dssp SSHHHHHHHHHHHHH----HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCHHHHHHHHHHHHH----HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 7764 333331 1223444 58888988888886431 1 233445555555555555543100012
Q ss_pred ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHh
Q 017633 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~ 366 (368)
....+..+.+.|..+ + ...+...+.++||.+.++ +|+++. .+++++++++++|+++++
T Consensus 351 ~~~~~~~~~~~~~~~--------------~---~~~~~~~l~~~gv~v~~~----~Ris~~~~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 351 NHITDQIGMFSFTGL--------------N---PKQVEYLINQKHIYLLPS----GRINMCGLTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp HHHHHCCSSEEECCC--------------C---HHHHHHHHHTTCEECCTT----SEEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred eEEcCCCceEEEeCC--------------C---HHHHHHHHHhCCEEecCC----cEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 222223344444322 1 234445566789999985 355544 489999999999999987
Q ss_pred hC
Q 017633 367 QI 368 (368)
Q Consensus 367 ~~ 368 (368)
++
T Consensus 410 ~~ 411 (412)
T 1ajs_A 410 KI 411 (412)
T ss_dssp HC
T ss_pred hc
Confidence 64
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=233.22 Aligned_cols=303 Identities=12% Similarity=0.055 Sum_probs=204.7
Q ss_pred CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHH--HHHHHHHHh-cC--------CceEEEEcCCCCCCchhhhhhcCC
Q 017633 31 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVLRLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGS 98 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~--~al~~~~~~-~~--------~~~vi~~~~~~~~~~~~~~~~~~~ 98 (368)
+.....+|++.++++++ +++++++|+|+++++. .+++.+... ++ ++.|++..++|++....+... |.
T Consensus 68 ~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~ 146 (423)
T 3ez1_A 68 GVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL-GF 146 (423)
T ss_dssp CTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH-TC
T ss_pred CCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc-CC
Confidence 44567899999999998 7789999999999997 777665331 23 589999999998865443333 33
Q ss_pred CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEE
Q 017633 99 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGALL 177 (368)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~-~~~~~~l 177 (368)
.+...+... .++ |+++|++++++. +++++++++|+.+|++....+.+.+++|+++| ++||+++
T Consensus 147 ~~~~v~~~~-~g~--------------d~~~l~~~l~~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~l 210 (423)
T 3ez1_A 147 ELLTVDMQS-DGP--------------DVDAVERLAGTD-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTI 210 (423)
T ss_dssp EEEEEEEET-TEE--------------CHHHHHHHHHSC-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEE
T ss_pred EEEeccCCC-CCC--------------CHHHHHHHHhhC-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEE
Confidence 322111111 111 899999999632 47888888876555433444555599999999 9999999
Q ss_pred EEehhhhch-hcc-c-Cc--cc-------cccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 178 IFDEVMTGF-RLA-Y-GG--AQ-------EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 178 i~De~~~~~-~~g-~-~~--~~-------~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
|+||+|..+ ..+ . .. .. +..+....+.||||.+.+|+|+||+++++++++.+.. .....+++.++
T Consensus 211 i~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~ 287 (423)
T 3ez1_A 211 FADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSK---YLGAQSIGPNK 287 (423)
T ss_dssp EEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHH---HHHHSCSCCCH
T ss_pred EEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHH---HHhhhccCCCH
Confidence 999999753 222 1 11 11 1223445577999996689999999999998888762 33456678899
Q ss_pred HHHHHHHHHHHH-Hcc-----CCHHHHHHHHHHHHHHHHHHHHHhcC--CceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 246 LAMTAGIHTLKR-LKE-----PGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 246 ~~~~a~~~~l~~-~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+++.++.++++. ... ....+.+.++++.+++.|.+.+...+ .....+..+.++|+.+..
T Consensus 288 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~------------- 354 (423)
T 3ez1_A 288 VEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAE------------- 354 (423)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESS-------------
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCC-------------
Confidence 999988888774 110 11223344455555555555444443 222234456788887732
Q ss_pred cHHHHHHHHHHHHcCeeecCCC----------CCccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~----------~~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
. +..++.+.|.++||.+.+++ ...+|+++.. +++++++++++|++++.+
T Consensus 355 ~-~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 355 P-VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp S-CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 24678888999999999832 1234665554 999999999999998864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=223.45 Aligned_cols=317 Identities=12% Similarity=0.077 Sum_probs=219.2
Q ss_pred ccCCCcHHHHHHHHHHHHcCC--------C-CCCCChhHHHHHHH-HHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCC
Q 017633 6 ILFPSYLQVLAALGETMKKGT--------S-FGAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~--------~-~~~~~~~~~~l~~~-l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
+.++.+|++++++.+++.... . ...+.+...+++++ ++++++.. ++++++||++|+..+++.+ ..++
T Consensus 17 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~--~~~g 93 (371)
T 2e7j_A 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSL--AKKD 93 (371)
T ss_dssp HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHH--CCTT
T ss_pred cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHH--hCCC
Confidence 356678999999998876531 1 12356778999999 99999744 9999999999999999877 3567
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccC--CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC--CCeEEEEEcccCC
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLG--LPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVVG 151 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~--~~~~~~~~~~~~~ 151 (368)
+.|++..++|++.... +...|..+.... ......+ |++++++.++++. ++++++++++.++
T Consensus 94 d~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~~~~~~~~v~~~~~~n 158 (371)
T 2e7j_A 94 AWVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDYAI--------------TPENFAQTIEETKKRGEVVLALITYPDG 158 (371)
T ss_dssp CEEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTCCC--------------CHHHHHHHHHHHTTTSCEEEEEEESSCT
T ss_pred CEEEEccCcchHHHHH-HHHcCCeEEEeecccCCCCCc--------------CHHHHHHHHHhhcccCCeEEEEEECCCC
Confidence 8999999999887555 333444332222 1111111 8999999998531 3678888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHH-hc
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM-VA 230 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~-~~ 230 (368)
++|.+.+ +++|.++|++||+++|+||+|+.+.. ......++.+..+.|+||++++|.|+||+++++++++. +.
T Consensus 159 ptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~ 232 (371)
T 2e7j_A 159 NYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRM--PVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLR 232 (371)
T ss_dssp TTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTB--CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTC
T ss_pred CCcccCC----HHHHHHHHHHcCCeEEEECccccCCC--CCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhcc
Confidence 8898888 89999999999999999999975411 12233344333345889999977799999999887776 65
Q ss_pred CCCCccccc-----cCCCCHHHHHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHhcCCceEEee--ccceEEEE
Q 017633 231 PAGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFF 301 (368)
Q Consensus 231 ~~~~~~~~~-----t~~~~~~~~~a~~~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 301 (368)
..... ... +++.++.+++++.++++.+.+ .+.+++ +++++++++.|++. ++....+. .++++++.
T Consensus 233 ~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~ 306 (371)
T 2e7j_A 233 RSEKY-KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFH 306 (371)
T ss_dssp BCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEE
T ss_pred ccccC-cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEecCCCccCceEEEE
Confidence 42221 111 445677778777788877654 455667 77778887777664 33222121 36677776
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC-------C--CCccc-cccC---CCHHHHHHHHHHHHHHHhhC
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~--~~~~~-~~~~---~~~~~i~~~~~~l~~~l~~~ 368 (368)
+. +..++.+.|.++||.+.+. + ...+| +++. ++++++++++++|+++++++
T Consensus 307 ~~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 307 AE----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp CH----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CC----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 51 3578889999999998761 1 23456 6544 79999999999999998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=232.93 Aligned_cols=304 Identities=15% Similarity=0.093 Sum_probs=196.1
Q ss_pred ChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHHHHHHHHHHHhcCCc--------------eEEEE-cCCCCCCc
Q 017633 32 CLLENVLAEMVISAV------P-SIEMVRFVNSGTEACMGVLRLARAFTGRE--------------RIIKF-EGCYHGHA 89 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~--------------~vi~~-~~~~~~~~ 89 (368)
.....++++.+++++ + +++++++|+||++|+..+++.+. .+++ .|++. .++|+++.
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~ 159 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG--GAFVNEHSQDKESKSVDKSILLPLTPEYIGYS 159 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS--EEEECC-------CEEEEEEEESSSSCCGGGT
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh--CCCccccccccccccccceEEEeCCCCccchh
Confidence 344567777777765 3 67899999999999999998763 2333 56665 77777654
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccC----------CCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP----------FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
....... .....+..++.++ .-|+++|++++.+..+++++++++..++++|.+++
T Consensus 160 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~- 224 (444)
T 3if2_A 160 DVHVEGQ--------------HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLT- 224 (444)
T ss_dssp TCCSSSC--------------CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCC-
T ss_pred hcccccc--------------hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCC-
Confidence 3211000 0000111112111 01899999885321146777777655566776655
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccC---ccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYG---GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~---~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
.+.+++|+++|++||++||+||+|..+..+.. ......+...++.|+||...+|+|+||+++++++++.+.. ..
T Consensus 225 ~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~---~~ 301 (444)
T 3if2_A 225 DEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSA---MN 301 (444)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHH---HH
Confidence 44599999999999999999999964311111 1111234445677999985589999999999999888763 33
Q ss_pred ccccCCCCHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
+..+++.+++++.++.+.++...- +.+.++++++++.+++.|.+.+...+.....+..+.++|+.+...
T Consensus 302 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~------ 375 (444)
T 3if2_A 302 AVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL------ 375 (444)
T ss_dssp HHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC------
T ss_pred HhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCC------
Confidence 445667788888888777762210 123445556666666666665433332223345567778776321
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCC--------------ccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFE--------------AGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--------------~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|.++||.+.++..+ .+|+++..+++++++++++|++++.+
T Consensus 376 ------~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 376 ------PISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp ------SSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 223578899999999999986432 35666666999999999999998864
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=230.46 Aligned_cols=319 Identities=11% Similarity=0.013 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC---CCC---eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP---SIE---MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~---~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
+.+.+++.+........+.+.....++++.+++++. +.+ ++++|+||++|+..+++.+ ..++|.|++..++|
T Consensus 59 ~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l--~~~gd~Vl~~~p~~ 136 (418)
T 3rq1_A 59 KTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNY--TEPGDEVLTADWYW 136 (418)
T ss_dssp HHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH--SCTTCEEEEESSCC
T ss_pred HHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHh--cCCCCEEEECCCCc
Confidence 456666655332211122233345666777766542 345 9999999999999999866 35678999999988
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC--CCCeEEEEEccc-CCCCCcccCCHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPV-VGNSGFIAPKPDF 162 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~--~~~~~~~~~~~~-~~~~g~~~~~~~~ 162 (368)
+++...+ ...|..+...++....+.. |++++++.+++. ++.++++++++. +|++|.+.+.++
T Consensus 137 ~~~~~~~-~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~- 201 (418)
T 3rq1_A 137 GAYRVIC-SDTGRTLVTYSLFDEHNNF-------------NHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKD- 201 (418)
T ss_dssp THHHHHH-HHTTCEEEEECSBCTTSSB-------------CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHH-
T ss_pred hhHHHHH-HHcCCEEEEEeeeCCCCCc-------------CHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHH-
Confidence 8765443 3334333222221111111 899999999742 123445666544 566776665444
Q ss_pred HHHHHHHHH------HhCCEEEEehhhhch-hccc---CccccccCCCcc-----hhhhhhhcc-CCccceeeee---hH
Q 017633 163 LNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD-----LTTLGKIIG-GGLPVGAYGG---RR 223 (368)
Q Consensus 163 l~~i~~l~~------~~~~~li~De~~~~~-~~g~---~~~~~~~~~~~d-----i~s~sK~~~-~G~~iG~v~~---~~ 223 (368)
+++|+++|+ +||+++|+||+|.+| +.+. .+.....++.++ +.||||.++ +|+|+||+++ ++
T Consensus 202 l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~ 281 (418)
T 3rq1_A 202 WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE 281 (418)
T ss_dssp HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH
T ss_pred HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH
Confidence 999999999 899999999999888 5442 111222333333 238999998 8999999988 88
Q ss_pred HHHHHhcCCCCcccc-ccCCCCHHHHHHHHHHHHHHc------c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 224 DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLK------E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 224 ~~~~~~~~~~~~~~~-~t~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
++++.+......... ...+.+.+++.++.++++... + ..+.++++++++.+.+.|+++ +.....+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 357 (418)
T 3rq1_A 282 EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV----GLPMLPYRG 357 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCCCCS
T ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCc
Confidence 888877632111111 223578888888777664210 0 123344555555555555554 333233334
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhhC
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.++|+.+ .+..++++.|.++||.+.+++ ..+|+++. .+++++++++++|+++++++
T Consensus 358 ~~~~~~~~----------------~~~~~~~~~l~~~gi~v~~g~-~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 358 GFFITIPT----------------DSANAICEELKKEHIYVIALA-NGIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp SSEEEEEC----------------TTHHHHHHHHHHTTEECEECS-SEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred eEEEEcCC----------------CCHHHHHHHHHhCCEEEecCC-CCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 44555543 124678889999999999974 34677665 59999999999999998753
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=229.29 Aligned_cols=328 Identities=13% Similarity=0.066 Sum_probs=206.1
Q ss_pred ceeccCCCcH--------HHHHHHHHHHHcCC-----CCCCCChhHHHHHHHHHhhC------C-CCCeEEEeCChHHHH
Q 017633 3 QLIILFPSYL--------QVLAALGETMKKGT-----SFGAPCLLENVLAEMVISAV------P-SIEMVRFVNSGTEAC 62 (368)
Q Consensus 3 ~~~~~g~~~~--------~v~~a~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~------~-~~~~v~~~~~gt~a~ 62 (368)
..++||++.| .+++++.+.+.+.. ..+.+.....++++.+++++ + ++++|++|+||++|+
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al 111 (417)
T 3g7q_A 32 GAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAF 111 (417)
T ss_dssp CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHH
Confidence 4567777543 23444444443321 12334455677888888775 3 578999999999999
Q ss_pred HHHHHHHHHhcCCc-----eEEEE-cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC------CCHHHH
Q 017633 63 MGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF------NDVSAL 130 (368)
Q Consensus 63 ~~al~~~~~~~~~~-----~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l 130 (368)
..+++.+. .+++ .|++. .++|++........... ...+..+..++. -|++++
T Consensus 112 ~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d~~~l 175 (417)
T 3g7q_A 112 FYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF--------------VSARPNIELLPEGQFKYHVDFEHL 175 (417)
T ss_dssp HHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCE--------------EECCCEEEEEGGGEEEEECCGGGC
T ss_pred HHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhh--------------ccccCcccccCCcccccccCHHHh
Confidence 99998773 2333 78886 88888754332211100 000011111111 167777
Q ss_pred HHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC---ccccccCCCcchhhhh
Q 017633 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG---GAQEYFGVTPDLTTLG 207 (368)
Q Consensus 131 e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~---~~~~~~~~~~di~s~s 207 (368)
+ ++ ++++++++++.+|++|.+++.++ +++|+++|++||+++|+||+|..+..+.. ......+....+.|||
T Consensus 176 ~--~~---~~~~~v~~~~p~NptG~~~~~~~-~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 249 (417)
T 3g7q_A 176 H--IG---EETGMICVSRPTNPTGNVITDEE-LMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLS 249 (417)
T ss_dssp C--CC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESG
T ss_pred c--cc---cCceEEEECCCCCCCCCccCHHH-HHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEech
Confidence 6 33 46777777666666776665554 99999999999999999999965311111 0111223344567999
Q ss_pred hhccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHH
Q 017633 208 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 208 K~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~ 282 (368)
|...+|+|+||+++++++++.+.. ..+..+++++++++.++.+.++...- +.+.++++++++.+++.|.+.+
T Consensus 250 K~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (417)
T 3g7q_A 250 KLGLPGSRCGIIIANDKTITAIAN---MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYL 326 (417)
T ss_dssp GGTCTTSCCEEEECCHHHHHHHHH---HHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCCCcceEEEEeCHHHHHHHHH---hhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 954489999999999999888763 33556667788888888777762210 1133445556666666666654
Q ss_pred HhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-------------CccccccCC
Q 017633 283 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------EAGFTSLAH 349 (368)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------------~~~~~~~~~ 349 (368)
...+.....+..+.++|+.+... ..+..++++.|.++||.+.++.. ..+|+++..
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~ 394 (417)
T 3g7q_A 327 SEERCLIHKPEGAIFLWLWFKDL------------PITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP 394 (417)
T ss_dssp CTTTCEEECCCBSSEEEEECTTC------------SSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS
T ss_pred ccCCceeeCCCcceEEEEEcCCC------------CCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC
Confidence 33333333445577778776321 22357889999999999988632 245666667
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 017633 350 SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~~ 367 (368)
+++++++++++|++++.+
T Consensus 395 ~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 395 EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=227.94 Aligned_cols=313 Identities=15% Similarity=0.086 Sum_probs=203.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++ +++......+.+.....++++.+++++ + +.+++++++||++|+..+++.+ ..+++.|++..
T Consensus 57 ~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~--~~~gd~Vl~~~ 133 (409)
T 2gb3_A 57 TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI--ANPGDEILVLE 133 (409)
T ss_dssp CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh--CCCCCEEEEcC
Confidence 567899999 887653222222223345555555544 2 3588999999999999999876 35678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCC-HHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
++|++..... ...|..+...+.....++ + +++|+++++ ++++++++++.++++|.+. +.+
T Consensus 134 ~~~~~~~~~~-~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~ 194 (409)
T 2gb3_A 134 PFYANYNAFA-KIAGVKLIPVTRRMEEGF--------------AIPQNLESFIN---ERTKGIVLSNPCNPTGVVY-GKD 194 (409)
T ss_dssp SCCTHHHHHH-HHHTCEEEEEECCGGGTS--------------CCCTTGGGGCC---TTEEEEEEESSCTTTCCCC-CHH
T ss_pred CCchhHHHHH-HHcCCEEEEeccCCCCCC--------------ccHHHHHHhhC---cCCeEEEECCCCCCCCCCc-CHH
Confidence 9998765433 333433222111100011 2 456666665 3677777776666677665 455
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccc--hhhhhhhcc-CCccceeeeehH-HHHHHhcCCCCc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPD--LTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPM 235 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~d--i~s~sK~~~-~G~~iG~v~~~~-~~~~~~~~~~~~ 235 (368)
++++|+++|++||+++|+||+|+++ +.+..... ..+. ..| +.|+||.++ +|+|+||+++++ ++++.+.. .
T Consensus 195 ~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~---~ 270 (409)
T 2gb3_A 195 EMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK---L 270 (409)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH---H
T ss_pred HHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHH---H
Confidence 6999999999999999999999887 44432222 1122 234 458999998 799999999988 88887762 2
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccch
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
....+ +.+++++.++.++++...+ +.+.+++.++++++++.|++ .++.. ..+..+.++|+.+.
T Consensus 271 ~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~--------- 336 (409)
T 2gb3_A 271 AQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE----HGLKRFTKPSGAFYITAELP--------- 336 (409)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCBCCCSBSSEEEEECS---------
T ss_pred HhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH----cCceeeeCCCeeEEEEEEeC---------
Confidence 23333 7788888888877752110 22334445555555555544 34332 22334556666552
Q ss_pred hcccccHHHHHHHHHHHHc------CeeecCCC---------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 313 AKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~------Gi~~~~~~---------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|+++ ||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 337 -----~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 337 -----VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp -----SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 11246789999987 99998762 2345676668999999999999998864
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=222.17 Aligned_cols=289 Identities=12% Similarity=0.074 Sum_probs=195.5
Q ss_pred CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCC-ceEEEEcCCCCCCchhhhhhcCCCccccCCCC
Q 017633 30 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 107 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (368)
|++....++++.++++++ +++++++++|++++++.+++.+. .++ ++|++..++|++....+.. .|..+...+..
T Consensus 55 Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~--~~g~d~Vl~~~p~~~~~~~~~~~-~g~~~~~v~~~- 130 (356)
T 1fg7_A 55 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC--EPGKDAILYCPPTYGMYSVSAET-IGVECRTVPTL- 130 (356)
T ss_dssp CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--CTTTCEEEECSSSCTHHHHHHHH-HTCEEEECCCC-
T ss_pred CCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh--CCCCCEEEEeCCChHHHHHHHHH-cCCEEEEeeCC-
Confidence 344447899999999997 67899999999999999998762 355 8999999999886544433 34333221111
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
.... .|++++++.++ +++++++++.++++|.+.+ .+++++|+++|+ ||+++|+||+|.++
T Consensus 131 -~~~~------------~d~~~l~~~i~----~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~ 191 (356)
T 1fg7_A 131 -DNWQ------------LDLQGISDKLD----GVKVVYVCSPNNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFC 191 (356)
T ss_dssp -TTSC------------CCHHHHHTSCT----TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred -CCCC------------CCHHHHHHHhc----CCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhc
Confidence 1100 17888888775 4666666665666776654 566999999999 99999999999887
Q ss_pred hcccCccc-cccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 187 RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 187 ~~g~~~~~-~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
........ +.++....+.|+||.++ +|+|+||+++++++++.+... ..+++.|++++.++.++++.... ++.
T Consensus 192 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~-~~~ 265 (356)
T 1fg7_A 192 PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV-----IAPYPLSTPVADIAAQALSPQGI-VAM 265 (356)
T ss_dssp GGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH-----SCSSCSCHHHHHHHHHHTSHHHH-HHH
T ss_pred CCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHh-----cCCCCCCHHHHHHHHHHhcCccH-HHH
Confidence 32222221 22334445679999999 899999999999988887632 23457889999888877753210 113
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecC-CCC--
Q 017633 265 EYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQF-- 340 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~~~-- 340 (368)
++..++.+..++.+.+.+.+.+. ....+..++++++.+. +..++.+.|.++||.+++ +..
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~~gI~v~~~g~~~~ 329 (356)
T 1fg7_A 266 RERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK----------------ASSAVFKSLWDQGIILRDQNKQPS 329 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET----------------THHHHHHHHHHTTEECEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC----------------CHHHHHHHHHHCCEEEEECCCCCC
Confidence 44444444444444444444442 1233455667777651 246789999999999998 532
Q ss_pred --CccccccCCCHHHHHHHHHHHHHH
Q 017633 341 --EAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 341 --~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
..+|+++. +++|+++++++|+++
T Consensus 330 ~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 330 LSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp CTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred CCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 23566554 689999999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=232.00 Aligned_cols=318 Identities=13% Similarity=0.040 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCC--eEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 12 LQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-------SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~--~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
|.+++++.+++.....+ +.+.....++++.+++++. +++ ++++|+||++|+..++++.....++|.|++.
T Consensus 70 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~ 149 (420)
T 4f4e_A 70 RAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAIS 149 (420)
T ss_dssp HHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEe
Confidence 79999999988763322 3334455677777777652 356 8999999999999997654445678899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++|++....+.. .|..+...++ ....... |++++++.+++++++++++++++.+|++|.+.+ .
T Consensus 150 ~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~-~ 214 (420)
T 4f4e_A 150 DPSWENHRALFDM-AGFEVVAYPYYDAKTNGV-------------NFDGMLAALNGYEPGTIVVLHACCHNPTGVDLN-D 214 (420)
T ss_dssp ESCCHHHHHHHHH-TTCCEEEEECEETTTTEE-------------CHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCC-H
T ss_pred CCCcHhHHHHHHH-cCCeEEEeeeeccccCcc-------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-H
Confidence 9999876443333 3333322111 1111111 899999999866557788887777777776554 5
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hccc--Ccccc----ccCCCcchhhhhhhcc-CCccceeeee---hHHHHHHh
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQE----YFGVTPDLTTLGKIIG-GGLPVGAYGG---RRDIMEMV 229 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~~~----~~~~~~di~s~sK~~~-~G~~iG~v~~---~~~~~~~~ 229 (368)
+.+++|+++|++||+++|+||+|.++ ..+. ..... ..+....+.||||.++ +|+|+||+++ ++++++.+
T Consensus 215 ~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~ 294 (420)
T 4f4e_A 215 AQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARV 294 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHH
Confidence 55999999999999999999999888 4321 11111 1222334568999999 7999999853 45554432
Q ss_pred cC-CCCccccccCCCCHHHHHHHHHHHHHH------cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 230 AP-AGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 230 ~~-~~~~~~~~t~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
.. ........+.+++.+++.++.+.++.. .+ +.+.++++++++.+.+.|++.....++....+..+.+.|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~ 374 (420)
T 4f4e_A 295 LSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYS 374 (420)
T ss_dssp HHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEEC
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEe
Confidence 21 001112234455677777766655421 00 2234555555666656555542211332222334445554
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccCC-CHHHHHHHHHHHHHHH
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVL 365 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~l 365 (368)
.+. ...+...|.++||.+.+++ |+++.. +++++++++++|++++
T Consensus 375 ~~~-----------------~~~~~~~l~~~gI~v~~~~----Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 375 GLT-----------------SAQVDRLREEFGIYAVSTG----RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CCC-----------------HHHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CCC-----------------HHHHHHHHHhCCEEecCCC----eEEEecCCHHHHHHHHHHHHHHh
Confidence 331 2456667778899999975 554443 7888999999999886
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=214.71 Aligned_cols=309 Identities=17% Similarity=0.145 Sum_probs=212.5
Q ss_pred cC-CCcHHHHHHHHHHHHc-CC-----CC-CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 7 LF-PSYLQVLAALGETMKK-GT-----SF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 7 ~g-~~~~~v~~a~~~~~~~-~~-----~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
+| +.+|++++++.+++.. .. .+ +...+...++++.++++++- ++.+++++|++++..+++.+ ..+++.|
T Consensus 50 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~-~~~i~~~sGt~a~~~~~~~~--~~~gd~v 126 (384)
T 1bs0_A 50 LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY-SRALLFISGFAANQAVIAAM--MAKEDRI 126 (384)
T ss_dssp TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--CCTTCEE
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEeCCcHHHHHHHHHHh--CCCCcEE
Confidence 67 4889999999998876 21 12 12457889999999999863 35667778899999998765 3455666
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
++.. .+|+.....+...|. +++.+|..|++++++.+++..+.++++++++.++++|.+.+
T Consensus 127 ~~~~-~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~ 186 (384)
T 1bs0_A 127 AADR-LSHASLLEAASLSPS-------------------QLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP 186 (384)
T ss_dssp EEET-TCCHHHHHHHHTSSS-------------------EEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC
T ss_pred EEcc-cccHHHHHHHHHcCC-------------------CEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC
Confidence 5555 455544444443333 23334445899999999864334788888888888898888
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHHhcCCC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+++|+++|++||+++|+||+|+.+ . .+... ...++..+|++ |+||.+++ +.||+++++++++.+....
T Consensus 187 ----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~ 259 (384)
T 1bs0_A 187 ----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFA 259 (384)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhc
Confidence 999999999999999999999643 2 22221 23455567776 89999983 3399999998888776322
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.. ...+.+.++++++++.++++.+.+ +++.++++++++++++.|++ .+.. ...+.++++++.+.
T Consensus 260 ~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~~~~------- 326 (384)
T 1bs0_A 260 RH-LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD----LPFT-LADSCSAIQPLIVG------- 326 (384)
T ss_dssp HH-HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT----SSCE-ECSCCSSBCCEEEE-------
T ss_pred hh-hhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh----cCCc-ccCCCCCEEEEEeC-------
Confidence 11 223346789999999988887752 23445555555555555544 3432 12245666677652
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCC-------Cccccc--cCCCHHHHHHHHHHHHHH
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-------~~~~~~--~~~~~~~i~~~~~~l~~~ 364 (368)
...+..++.+.|.++||.+.++.. ..+|++ ..++++++++++++|+++
T Consensus 327 ------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 327 ------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 234567899999999999998643 234543 445899999999999875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=229.02 Aligned_cols=318 Identities=14% Similarity=0.014 Sum_probs=199.5
Q ss_pred HHHHHHHHH-HHHcCCCCCC-CChhHHHHHHHHHhhCC-------CCC--eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 12 LQVLAALGE-TMKKGTSFGA-PCLLENVLAEMVISAVP-------SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 12 ~~v~~a~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~--~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
|++++++.+ ++.....+++ +.....++++.+++++. +++ ++++|+||++++..++++.....+++.|++
T Consensus 47 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~ 126 (397)
T 3fsl_A 47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWV 126 (397)
T ss_dssp HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEE
Confidence 799999998 8775322222 33445667777776652 356 899999999999999765444467889999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
..++|++....+.. .|..+...+. +...+.. |++++++.++++++++++++++..+|++|.+.+
T Consensus 127 ~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~- 191 (397)
T 3fsl_A 127 SDPTWENHVAIFAG-AGFEVSTYPWYDEATNGV-------------RFNDLLATLKTLQAGSIVLLHPCCHNPTGADLT- 191 (397)
T ss_dssp ESSCCHHHHHHHHH-TTCCEEEECCEETTTTEE-------------CHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCC-
T ss_pred eCCCchhHHHHHHH-cCCceEEEeeeeccCCcC-------------cHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCC-
Confidence 99999876443333 3333322111 0011111 899999999875456777777666666776555
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hcc--cCccc----cccCCCcchhhhhhhcc-CCccceeeee---hHHHHHH
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ----EYFGVTPDLTTLGKIIG-GGLPVGAYGG---RRDIMEM 228 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g--~~~~~----~~~~~~~di~s~sK~~~-~G~~iG~v~~---~~~~~~~ 228 (368)
.+.+++|+++|++||+++|+||+|.++ ..+ ..... +..+....+.||||.++ +|+|+||+++ ++++++.
T Consensus 192 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~ 271 (397)
T 3fsl_A 192 NDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGR 271 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHH
Confidence 444999999999999999999999887 431 11111 12233344668999999 8999999964 4555543
Q ss_pred hcCC-CCccccccCCCCHHHHHHHHHHHHHH------cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 229 VAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 229 ~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
+... .......+.+++.+++.++.+.++.. .+ +.+.++++++++++++.|++.....+.....+..+.+.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 351 (397)
T 3fsl_A 272 VLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSY 351 (397)
T ss_dssp HHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEE
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEe
Confidence 3210 01112234445667777666555411 01 234555666666666666664321123222233345555
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccCC-CHHHHHHHHHHHHHHH
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVL 365 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~l 365 (368)
+.+. ...+...|.++||.+.+++ |+++.. +++++++++++|++++
T Consensus 352 ~~~~-----------------~~~~~~~l~~~gi~v~~g~----Ris~~~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 352 TGLS-----------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp CCCC-----------------HHHHHHHHHTTCEECCTTC----EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred cCCC-----------------HHHHHHHHHhCCEEECCCC----eEEEEecCHhhHHHHHHHHHhhC
Confidence 4331 2446677778899999986 544444 7788999999998864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=228.40 Aligned_cols=318 Identities=16% Similarity=0.079 Sum_probs=199.0
Q ss_pred CCcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCCeEEE--eCChHHHHHHHHHHHHHhcCCceE
Q 017633 9 PSYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-------SIEMVRF--VNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
+.+|.+++++.+++.+...+ +.+.....++++++++++. +.+++++ ++||++|++.+++++....+++.|
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~V 123 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRV 123 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEE
Confidence 34589999998887653222 3355567788888888762 2678988 999999999999776544578899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
++..++|++....+.. .|..+...+... ..... |++++++.+++++++++++++...++++|.+
T Consensus 124 l~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~- 188 (396)
T 2q7w_A 124 WVSNPSWPNHKSVFNS-AGLEVREYAYYDAENHTL-------------DFDALINSLNEAQAGDVVLFHGCCHNPTGID- 188 (396)
T ss_dssp EEEESCCTHHHHHHHH-TTCEEEEEECEETTTTEE-------------CHHHHHHHHTTCCTTCEEEEECSSCTTTCCC-
T ss_pred EEcCCCchhHHHHHHH-cCCceEEEecccCCCCCc-------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-
Confidence 9999999986544433 233222111100 01101 7999999998543346666655555556654
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc--cCccccccC----CCcchhhhhhhcc-CCccceeeee---hH---
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFG----VTPDLTTLGKIIG-GGLPVGAYGG---RR--- 223 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g--~~~~~~~~~----~~~di~s~sK~~~-~G~~iG~v~~---~~--- 223 (368)
.+.+++++|+++|++||+++|+||+|.++ +.+ .......+. ....+.|+||.++ +|+|+||+++ ++
T Consensus 189 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~ 268 (396)
T 2q7w_A 189 PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETV 268 (396)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHH
Confidence 45556999999999999999999999887 432 222222121 1122568999999 8999999986 55
Q ss_pred -HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHH------cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 224 -DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 224 -~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
++++.+.. .....+.++++++++++.++++.. .+ +.+.++++++++++.+.|++.....++....+..
T Consensus 269 ~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 345 (396)
T 2q7w_A 269 DRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN 345 (396)
T ss_dssp HHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC
T ss_pred HHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCC
Confidence 34444431 112223345888888887777532 00 1233445555555555555432100122122233
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHH
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVL 365 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l 365 (368)
+.++|+.+ + ...+...|.++||.+.++ +|+++. .+++++++++++|++++
T Consensus 346 ~~~~~~~~--------------~---~~~~~~~l~~~gv~v~~~----~Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 346 GMFSFSGL--------------T---KEQVLRLREEFGVYAVAS----GRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp SSEEECCC--------------C---HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred ceEEEecC--------------C---HHHHHHHHHhcCeeecCC----ceEEEeecCHHHHHHHHHHHHhcC
Confidence 44444432 1 134566677889999985 355433 38999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=222.65 Aligned_cols=313 Identities=14% Similarity=0.111 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHHHcC----CCCCC-CChhHHHHHHHHHhh--CC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 10 SYLQVLAALGETMKKG----TSFGA-PCLLENVLAEMVISA--VP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~--~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
.+|.+++++.+++... ..+++ +.....++++.++++ .+ ..+++++++|+++++..++.++ .+++.|++
T Consensus 47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~---~~gd~Vl~ 123 (400)
T 3asa_A 47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFF---GPNQTVAI 123 (400)
T ss_dssp CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHc---CCCCEEEE
Confidence 5788999999888652 12223 445678999999998 34 4689999999999999866543 46789999
Q ss_pred EcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 81 FEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
..++|++....+ ...|.. +...+.....++. .|++ + + ++++++++++.++++|.+. +
T Consensus 124 ~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~~------------~~l~---~-~----~~~~~v~l~~p~nptG~~~-~ 181 (400)
T 3asa_A 124 QDPSYPAYLDIA-RLTGAKEIIALPCLQENAFF------------PEFP---E-D----THIDILCLCSPNNPTGTVL-N 181 (400)
T ss_dssp EESCCHHHHHHH-HHTTCSEEEEEECCGGGTTC------------CCCC---T-T----CCCSEEEEESSCTTTCCCC-C
T ss_pred CCCCcHHHHHHH-HHcCCcceEecccchhcCcc------------cChh---h-c----cCccEEEEeCCCCCCCCcC-C
Confidence 999998865433 333433 2221111100110 0221 1 1 2456666655555567655 5
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hccc-CccccccC----CCcchhhhhhhcc-CCccceeeeehHHH-------
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFG----VTPDLTTLGKIIG-GGLPVGAYGGRRDI------- 225 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~----~~~di~s~sK~~~-~G~~iG~v~~~~~~------- 225 (368)
.+++++|+++|++||+++|+||+|.++ ..+. ......++ ....+.|+||.++ +|+|+||+++++++
T Consensus 182 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~ 261 (400)
T 3asa_A 182 KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHF 261 (400)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCB
T ss_pred HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhh
Confidence 666999999999999999999999987 4443 12222222 2234679999998 89999999988776
Q ss_pred HHHhcCCCCccccccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE-ee
Q 017633 226 MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF-FT 303 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 303 (368)
++.+.. .....++ +.+.+++.++.++++...-+.+.++++++++++++.|++. +.....+..+.++|+. +.
T Consensus 262 ~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 334 (400)
T 3asa_A 262 VIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----GFEVFGGEHAPYLWVKPTQ 334 (400)
T ss_dssp HHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----TCEEEECSSSSEEEEECCC
T ss_pred HHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----CCeeeCCCCceEEEEeccC
Confidence 444431 1122333 5788999988888875422445667777777777777653 4332222346677877 42
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. ..+..++++.|++ +||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 335 ~-------------~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 335 A-------------NISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp T-------------TCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC----
T ss_pred C-------------CCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 1 1112467777875 499999863 2346677778999999999999988764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=229.27 Aligned_cols=300 Identities=10% Similarity=0.013 Sum_probs=201.9
Q ss_pred ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHH--HHHHHHHHHhc---C--------CceEEEEcCCCCCCchhhhhhcC
Q 017633 32 CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAFT---G--------RERIIKFEGCYHGHADPFLVKAG 97 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~--~~al~~~~~~~---~--------~~~vi~~~~~~~~~~~~~~~~~~ 97 (368)
.....+|++.++++++ ++++|++|+|+++++ ..+++.+.. + + ++.|++..++|+++...+... |
T Consensus 75 ~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~-~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~-g 152 (422)
T 3d6k_A 75 LLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTW-GNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-G 152 (422)
T ss_dssp SSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHH-CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcC-cccccccccccCCCCEEEEeCCccHHHHHHHHHc-C
Confidence 3447899999999987 678999999999997 455555432 2 1 346999999998875444333 3
Q ss_pred CCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCE
Q 017633 98 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK-ENGAL 176 (368)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~-~~~~~ 176 (368)
..+...+... .++ |++++++.++. .+++++++.|+.+|++....+.+++++|+++|+ +||++
T Consensus 153 ~~~~~v~~~~-~g~--------------d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~ 215 (422)
T 3d6k_A 153 FEMINVPMTD-EGP--------------DMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFR 215 (422)
T ss_dssp CEEEEEEEET-TEE--------------CHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred CEEEecCCCC-CCC--------------CHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCE
Confidence 3322111111 111 89999999973 267888866665554334556666999999999 99999
Q ss_pred EEEehhhhc--h-hccc-Cccc-------cccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 177 LIFDEVMTG--F-RLAY-GGAQ-------EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 177 li~De~~~~--~-~~g~-~~~~-------~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|+||+|.. | ..+. .... +..+..+.+.||||...+|+|+||+++++++++.+.. .....+++.+.
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~---~~~~~~~~~~~ 292 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYAS---HANVRGIGPNK 292 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCH
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHH---HHHhhcCCCCH
Confidence 999999974 5 3332 1122 1234456678999995589999999999998888763 33445667899
Q ss_pred HHHHHHHHHHHHHc---c--CCHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 246 LAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 246 ~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
+++.++.++++... + +...+.++++++.+++.|.+.+...+. ....+..+.++|+.+.. .
T Consensus 293 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~-------------~- 358 (422)
T 3d6k_A 293 LNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVP-------------G- 358 (422)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEEST-------------T-
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCC-------------C-
Confidence 99988887775210 0 112344455666666666665444432 21233456778887731 1
Q ss_pred HHHHHHHHHHHcCeeecCCCC----------CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 320 KFARFYRGMLEEGVYFAPSQF----------EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 320 ~~~~~~~~l~~~Gi~~~~~~~----------~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
+..++.+.|.++||.+.+++. ..+|+++. ++++++++++++|++++.+
T Consensus 359 ~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 359 TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 235678888999999998421 23566666 6999999999999998764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-27 Score=214.88 Aligned_cols=314 Identities=20% Similarity=0.151 Sum_probs=213.4
Q ss_pred ccCC-CcHHHHHHHHHHHHcC-CC------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 6 ILFP-SYLQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 6 ~~g~-~~~~v~~a~~~~~~~~-~~------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
++|+ .+|++++++.+++.+. .. .+...+...++++.++++++..+.++++ +|++++..++.++....+++.
T Consensus 56 ~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~-sG~~a~~~~~~~l~~~~~gd~ 134 (401)
T 2bwn_A 56 YLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFS-SAYNANDATLSTLRVLFPGLI 134 (401)
T ss_dssp TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEES-CHHHHHHHHHHHHHHHSTTCE
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEEC-CcHHHHHHHHHHHhcCCCCCE
Confidence 3344 4778999999988762 11 1224567899999999999865667765 678888888765433335677
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~ 156 (368)
|++..+.|+... ......| .+++.++.+|++++++.+++.. ++++++++++.++++|.+
T Consensus 135 Vl~~~~~~~~~~-~~~~~~g-------------------~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~ 194 (401)
T 2bwn_A 135 IYSDSLNHASMI-EGIKRNA-------------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDF 194 (401)
T ss_dssp EEEETTCCHHHH-HHHHHSC-------------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred EEECchhhHHHH-HHHHHcC-------------------CeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence 887776665433 2222222 2344455558999999998643 368889999988889998
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhh-ch--hcccCccccccCC----Ccchhhhhhhcc-CCccceeeeehHHHHHH
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV----TPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~-~~--~~g~~~~~~~~~~----~~di~s~sK~~~-~G~~iG~v~~~~~~~~~ 228 (368)
.+ +++|+++|++||+++|+||+|+ ++ ..|..+. ...++ .+.+.|+||+++ +| ||+++++++++.
T Consensus 195 ~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~~~~~ 266 (401)
T 2bwn_A 195 GP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDA 266 (401)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCC---CEEecCHHHHHH
Confidence 88 9999999999999999999997 33 2333222 33333 334569999998 44 889888888877
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
+........ .+.+.++++++++.++++.+.+. .+.++++++++++++.|++. +.... ...++++++.+.
T Consensus 267 l~~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~-~~~~~~~~~~~~-- 338 (401)
T 2bwn_A 267 VRSYAPGFI-FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL----GMPII-DHGSHIVPVVIG-- 338 (401)
T ss_dssp HHHHCHHHH-TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH----TCCBC-CCSSSCEEEECC--
T ss_pred HHHhCcCce-ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC----CCccc-CCCCCeEEEEeC--
Confidence 653221112 12244678888888899887542 45677777778887777765 22211 233457777652
Q ss_pred CCcccchhcccccHHHHHHHHHHH-HcCeeecCCCC-------Cccccc--cCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~-------~~~~~~--~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++.+.|+ ++||.+.++.. ..+|++ ..++++|+++++++|++++++
T Consensus 339 -----------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 339 -----------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp -----------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred -----------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 2344678999996 78999987532 234543 447999999999999998765
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=211.16 Aligned_cols=302 Identities=13% Similarity=0.093 Sum_probs=205.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
|+++ .+|.+++++.+.+..... ++.....++++.++++++ +.+++++++|+++++..++..+ +++.|++..+
T Consensus 26 ~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~----~gd~vl~~~p 98 (337)
T 3p1t_A 26 NPEA-VEPRVQAAIAAAAARINR--YPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF----SSMRFVTAWP 98 (337)
T ss_dssp CCSC-CCHHHHHHHHHHGGGTTS--CCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS----TTSEEEEESS
T ss_pred CCCC-CCHHHHHHHHHhhhhhcc--CCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc----CCCeEEEeCC
Confidence 5666 678999999998776433 366788999999999998 6789999999999999998765 6789999998
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|++.... +...|..+...+.....++ |++++++. .+++++++...++++|.+.+ +
T Consensus 99 ~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~-----~~~~~v~i~~p~nptG~~~~----~ 154 (337)
T 3p1t_A 99 GFDGYRAR-IAVSGLRHFEIGLTDDLLL--------------DPNDLAQV-----SRDDCVVLANPSNPTGQALS----A 154 (337)
T ss_dssp SCSHHHHH-HTTSCCEEEEECBCTTSSB--------------CHHHHTTC-----CTTEEEEEESSCTTTCCCCC----H
T ss_pred CcHHHHHH-HHHcCCEEEEecCCCCCCC--------------CHHHHHhh-----cCCCEEEEeCCCCCCCCCCC----H
Confidence 88875432 2333332222111111111 78888764 24566666666677888888 8
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccC
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 241 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~ 241 (368)
+++.++|+++++ +|+||+|.+| ..+.. .....+....+.|+||.++ +|+|+||+++++++++.+.... .++
T Consensus 155 ~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~-----~~~ 227 (337)
T 3p1t_A 155 GELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ-----WFC 227 (337)
T ss_dssp HHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS-----CTT
T ss_pred HHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc-----CCC
Confidence 899999999997 6669999877 33221 1122233344668999998 8999999999999988887422 345
Q ss_pred CCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHH
Q 017633 242 SGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 320 (368)
Q Consensus 242 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (368)
+.+.+++.++.++++.... +...+++.++++++.+.|++ .+.. ...+.+.++++... +
T Consensus 228 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~~~~-------------~--- 286 (337)
T 3p1t_A 228 NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRG----LGYR-VASSEANFVLVENA-------------A--- 286 (337)
T ss_dssp CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TTCC-BCCCSSSEEEEECT-------------T---
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----CcCE-ECCCCCeEEEEEcC-------------C---
Confidence 6788888887777652211 12233444444444444444 4433 23445666666541 1
Q ss_pred HHHHHHHHHHcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 321 FARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 321 ~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..++.+.|.++||.+.++.. ..+|+++. +++++++++++|+++.+
T Consensus 287 ~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 GERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp THHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 24677888999999998753 34566654 78999999999998764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=228.53 Aligned_cols=320 Identities=15% Similarity=0.025 Sum_probs=202.5
Q ss_pred CCcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhC-C---CCCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 9 PSYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAV-P---SIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~---~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+.+|.+++++.+++.....+++ +.....++++.+++++ + +.+++++ ++||++|++.+++.+..+.+++.|++.
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~ 123 (394)
T 2ay1_A 44 PIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVS 123 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEc
Confidence 3468999999888765322223 3455678888888876 3 3678998 999999999999877554567899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++|++........ |..+...+... ..... |++++++.+++++++++++++.+.++++|.+ .+.
T Consensus 124 ~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~-~~~ 188 (394)
T 2ay1_A 124 DPTWPNHVSIMNFM-GLPVQTYRYFDAETRGV-------------DFEGMKADLAAAKKGDMVLLHGCCHNPTGAN-LTL 188 (394)
T ss_dssp ESCCHHHHHHHHHH-TCCEEEEECEETTTTEE-------------CHHHHHHHHHTCCTTCEEEEESSSCTTTCCC-CCH
T ss_pred CCCChhHHHHHHHc-CCceEEEecccccCCcc-------------CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC-CCH
Confidence 99999865544333 33322111100 01101 7999999998643346666666666666765 455
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcc--cCcccc---ccC-CCcchhhhhhhcc-CCccceeeee---hHHHHHHh
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQE---YFG-VTPDLTTLGKIIG-GGLPVGAYGG---RRDIMEMV 229 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g--~~~~~~---~~~-~~~di~s~sK~~~-~G~~iG~v~~---~~~~~~~~ 229 (368)
+++++|+++|++||+++|+||+|+++ +.+ ...... ..+ ....+.|+||.++ +|+|+||+++ ++++++.+
T Consensus 189 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l 268 (394)
T 2ay1_A 189 DQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELA 268 (394)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHH
Confidence 66999999999999999999999887 432 111122 111 1122458999999 8999999987 66554332
Q ss_pred cCC-CCccccccCCCCHHHHHHHHHHHHHH------c--cCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 230 APA-GPMYQAGTLSGNPLAMTAGIHTLKRL------K--EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 230 ~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~------~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
... .......+.++++++++++.++++.. . -+.+.++++++++++.+.|++.....++....+..+.++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~ 348 (394)
T 2ay1_A 269 QGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRL 348 (394)
T ss_dssp HHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEEC
T ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEee
Confidence 210 01111222234888888888777633 1 12345556666666666666543110122122233555554
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHH
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKV 364 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~ 364 (368)
.+ + ...+...|.++||.+.++ +|+++ .++++++++++++|+++
T Consensus 349 ~~--------------~---~~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 349 GA--------------T---PEQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp CC--------------C---HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred CC--------------C---HHHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHHHHHHc
Confidence 33 1 135667777899999986 34433 35899999999999876
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=217.09 Aligned_cols=318 Identities=13% Similarity=0.101 Sum_probs=214.3
Q ss_pred CCCcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 8 FPSYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
++.+|++++++.+++.. .++ ...+...++++++++.++ + .+++++++||++|+..+++.+ ..+++.|++..++
T Consensus 29 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l--~~~gd~vl~~~~~ 104 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG--VSKGGKVLVTIIG 104 (386)
T ss_dssp CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH--SCTTCEEEEEESS
T ss_pred cCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh--hcCCCeEEEEcCC
Confidence 34567788877665432 221 114677888999999887 3 577999999999999999876 3567899999999
Q ss_pred CCCC-chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 85 YHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
|++. ........|..+....... .+. .|+++|++.+++. ++++++++++.++++|.+.+ +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l 165 (386)
T 2dr1_A 105 AFGKRYKEVVESNGRKAVVLEYEP-GKA-------------VKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP----L 165 (386)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT-TCC-------------CCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----H
T ss_pred chhHHHHHHHHHhCCceEEEecCC-CCC-------------CCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC----H
Confidence 9873 2233333343332221111 111 1899999999643 36777888777788888887 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC----------
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---------- 233 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~---------- 233 (368)
++|.++|++||+++|+||+|+.... ......++.+.-+.++||+++++.++||+++++++++.+....
T Consensus 166 ~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (386)
T 2dr1_A 166 PELAKVAKEHDKLVFVDAVSAMGGA--DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPL 243 (386)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTB--CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHH
T ss_pred HHHHHHHHHcCCeEEEEccccccCc--cccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHH
Confidence 9999999999999999999974311 1222233332223467799996556999999998888774210
Q ss_pred ---Cc--cccccCCCCHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEEEE
Q 017633 234 ---PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFF 301 (368)
Q Consensus 234 ---~~--~~~~t~~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 301 (368)
.. ....+++.++++++++.++++.+.+. .+.++++++++++++.|++. +.....+ ..+.++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 319 (386)
T 2dr1_A 244 YVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI----GLDILAEPGHESPTITAVL 319 (386)
T ss_dssp HHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCTTCBCSSEEEEE
T ss_pred HHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----CCeeCcCccccCCceEEEE
Confidence 00 12345577888999988888876544 34566666666666666653 3221111 135666776
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC----CccccccC--CCHHHHHHHHHHHHHHHhh
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLA--HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----~~~~~~~~--~~~~~i~~~~~~l~~~l~~ 367 (368)
+. ...+..++.+.|.++||.+.++.. ..+|+++. ++++++++++++|++++++
T Consensus 320 ~~-------------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 320 TP-------------PGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp CC-------------TTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cC-------------CCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 52 112357899999999999998742 34565544 7999999999999998864
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=223.96 Aligned_cols=302 Identities=10% Similarity=-0.034 Sum_probs=205.4
Q ss_pred CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHH--HHHHHHHHHh-c---------CCceEEEEcCCCCCCchhhhhhcC
Q 017633 31 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-T---------GRERIIKFEGCYHGHADPFLVKAG 97 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~--~~al~~~~~~-~---------~~~~vi~~~~~~~~~~~~~~~~~~ 97 (368)
+.....+|++.++++++ +++++++|+|+++++ +.+++.+... + +++.|++..++|++....+.. .|
T Consensus 76 ~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~-~g 154 (427)
T 3ppl_A 76 GLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITER-FG 154 (427)
T ss_dssp CSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH-TT
T ss_pred CCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH-cC
Confidence 34567899999999987 678999999999999 4777655331 2 178999999999876544333 33
Q ss_pred CCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCE
Q 017633 98 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGAL 176 (368)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~-~~~~~~ 176 (368)
..+...+... .++ |+++|+++++. +++++++++|..+|++....+.+.+++|+++| ++||++
T Consensus 155 ~~~~~v~~~~-~g~--------------d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ 217 (427)
T 3ppl_A 155 FEMISVPMNE-DGP--------------DMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFR 217 (427)
T ss_dssp CEEEEEEEET-TEE--------------CHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred CEEEEeCCCC-CCC--------------CHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCE
Confidence 3322111111 111 89999999952 47889988876655433444555599999999 999999
Q ss_pred EEEehhhhch-hcccC---ccc-------cccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 177 LIFDEVMTGF-RLAYG---GAQ-------EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 177 li~De~~~~~-~~g~~---~~~-------~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
+|+||+|.++ +.+.. ... +..+....+.||||...+|+|+||+++++++++.+.. .....+++.++
T Consensus 218 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~ 294 (427)
T 3ppl_A 218 VVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG---HAGIRGIGPNK 294 (427)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCH
T ss_pred EEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH---HhhcccCCCCH
Confidence 9999999885 33221 111 1234455678999996689999999999998888762 33445677888
Q ss_pred HHHHHHHHHHHHH---cc--CCHHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 246 LAMTAGIHTLKRL---KE--PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 246 ~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
+++.++.++++.. .+ ....+.++++++.+.+.|.+.+...+ .....+..+.++|+.+.. .
T Consensus 295 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~-------------~- 360 (427)
T 3ppl_A 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVP-------------G- 360 (427)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECST-------------T-
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCc-------------c-
Confidence 9888877776521 00 12344455566666666665444432 222334457778887631 1
Q ss_pred HHHHHHHHHHHcCeeecCCC----------CCccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 320 KFARFYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 320 ~~~~~~~~l~~~Gi~~~~~~----------~~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
+..++.+.|.++||.+.+++ ...+|+++.. +++++++++++|++++.+
T Consensus 361 ~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 361 TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 24678899999999999843 1234665555 899999999999998864
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=215.07 Aligned_cols=315 Identities=14% Similarity=0.064 Sum_probs=206.1
Q ss_pred CcHHHHHHHHHHHHcCCCC--C--CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh-----------c
Q 017633 10 SYLQVLAALGETMKKGTSF--G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 73 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~--~--~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~-----------~ 73 (368)
.+|++++++.+++...... . ...+...++++++++.++ +.+++++++||++|+..+++.++.. .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 5678999999888753221 1 124566789999999998 6789999999999999999877553 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+++.|++..++|++... .....|..+...+.... +.. |+++++++++++ +++++++++.++++
T Consensus 122 ~gd~vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~-~~~-------------d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFEK-GREMMDLEYIYAPIKED-YTI-------------DEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHHHH-HHHHHTCEEEEECBCTT-SSB-------------CHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHHHH-HHHHcCceeEEEeeCCC-CcC-------------CHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 47888888888776433 33333443322221111 111 899999999853 56667766667778
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h--ccc---------CccccccCCCcchhhhhhhccCCccceeeee
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~---------~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~ 221 (368)
|.+.+ +++|.++|++||+++|+||+|+++ . .+. .+.... +.+..+.+++|.+++|.|+|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 88877 999999999999999999999765 2 221 222333 555556788999888889999977
Q ss_pred hH-HHHHHhcCCCCccc--------cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 017633 222 RR-DIMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 292 (368)
Q Consensus 222 ~~-~~~~~~~~~~~~~~--------~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 292 (368)
++ .+.+.+.....+.. +.+.+.+.+++.++...+....-+...+++.++++++++.|++. +......
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN----NFKPVIE 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSC
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC----CCEEEcC
Confidence 54 45554432111111 11112234455554444432111334556666666666666654 3322223
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Ccccc--ccCCCHHHHHHHHHHHHHHHh
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT--SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~~--~~~~~~~~i~~~~~~l~~~l~ 366 (368)
..++++++.+. + ..++.+.|.++||.+.++.. ..+|+ ...++++++++++++|++++.
T Consensus 336 ~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDE-------------D---YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECT-------------T---HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeC-------------C---HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 44566666541 1 47889999999999998864 34555 445799999999999999875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=221.15 Aligned_cols=322 Identities=13% Similarity=0.066 Sum_probs=214.7
Q ss_pred ccCCCcHHHHHHHHHHHHcCCC---C---CCCC--hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKGTS---F---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~---~---~~~~--~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.+|+.++++++++.+++..... + .++. +...++++.++++++ +.+++++++||++|++.+++.++ ..+++
T Consensus 24 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd 102 (390)
T 1elu_A 24 GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGD 102 (390)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCC
Confidence 4567788999999998875321 1 2232 678899999999998 66799999999999999998662 24678
Q ss_pred eEEEEcCCCCCCchhh---hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 77 RIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.|++..++|++..... ....|..+...+....... ..|++++++.++ ++++++++++.++++
T Consensus 103 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~---~~~~~v~~~~~~npt 167 (390)
T 1elu_A 103 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLG---PKTRLVILSHLLWNT 167 (390)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCC---TTEEEEEEESBCTTT
T ss_pred EEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcC---CCceEEEEeccccCC
Confidence 9999999998865432 2223433322211100000 017889988886 468888888888888
Q ss_pred CcccCCHHHHHHHHHHHH----HhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~----~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
|.+.+ +++|.++|+ +||+++|+||+|+.... ..... ...+|++ |+||++.+|.++|++++++++++
T Consensus 168 G~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~ 239 (390)
T 1elu_A 168 GQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL--PLDFS--RLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLG 239 (390)
T ss_dssp CCBCC----HHHHHHHHHHCCSSSCCEEEEECTTTBTTB--CCCTT--TSCCSEEEEESSSTTCCCTTCEEEEECTTTGG
T ss_pred ceecC----HHHHHHHHhhhhhhcCcEEEEEcccccCCc--CCChh--hcCCCEEEccccccccCCCceEEEEECHHhHh
Confidence 98888 999999999 99999999999962111 11112 2234554 58997777888999999988877
Q ss_pred HhcCCCCc-------------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 017633 228 MVAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GH 287 (368)
Q Consensus 228 ~~~~~~~~-------------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~ 287 (368)
.+...... ......+.+.++++++.++++.+.+.++.+.+.++.+..++.+.+.+.+. +.
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 319 (390)
T 1elu_A 240 EINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV 319 (390)
T ss_dssp GCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred hcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 76532100 01123356778888887888877554433344444444444444443333 22
Q ss_pred ceEE--eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-CCccccc--cCCCHHHHHHHHHHHH
Q 017633 288 AICG--GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTITAAE 362 (368)
Q Consensus 288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~~~~~~--~~~~~~~i~~~~~~l~ 362 (368)
.... ...++++.+.+.. ..+..++.+.|.++||.+.++. ...+|++ ...+++++++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 320 HCLATSAPQAGLVSFTVDS-------------PLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp EESCSSCCSSSEEEEEECS-------------SSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred EEecCccccccEEEEEcCC-------------CCCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHH
Confidence 1111 2356677776521 1124678999999999999875 3455654 5689999999999987
Q ss_pred HH
Q 017633 363 KV 364 (368)
Q Consensus 363 ~~ 364 (368)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=214.74 Aligned_cols=319 Identities=13% Similarity=0.092 Sum_probs=213.2
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 7 LFPSYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
.++.+|++++++.+++.. ..+ ...+...+++++++++++ +.+++++++||++|+..+++.+ ..+++.|++..++
T Consensus 17 ~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~--~~~gd~Vl~~~~~ 92 (392)
T 2z9v_A 17 PVNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL--ISPDDVVLNLASG 92 (392)
T ss_dssp CCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH--CCTTCCEEEEESS
T ss_pred CcCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh--cCCCCEEEEecCC
Confidence 345778899988776653 222 123457899999999998 5689999999999999999876 4567889999988
Q ss_pred CCCCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 85 YHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
|++.... .....|..+....... .+. .|++++++.+++. ++++++++++.++++|.+.+ +
T Consensus 93 ~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l 153 (392)
T 2z9v_A 93 VYGKGFGYWAKRYSPHLLEIEVPY-NEA-------------IDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP----I 153 (392)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCT-TSC-------------CCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC----H
T ss_pred cccHHHHHHHHHcCCceEEeeCCC-CCC-------------CCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc----H
Confidence 8875321 1122344332222211 111 1899999999643 35677888887788888888 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC-----C----
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG-----P---- 234 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~-----~---- 234 (368)
++|.++|++||+++|+||+|+.-. .......++.+.-+.|+||+++++.++|++++++++++.+.... .
T Consensus 154 ~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 231 (392)
T 2z9v_A 154 DAIGALVSAHGAYLIVDAVSSFGG--MKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSI 231 (392)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTT--BSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCS
T ss_pred HHHHHHHHHcCCeEEEEcccccCC--cccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccH
Confidence 999999999999999999996211 11222333332234567898886667799999998887764311 0
Q ss_pred --------ccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEE-e---eccceEE
Q 017633 235 --------MYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICG-G---YISGMFG 299 (368)
Q Consensus 235 --------~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~ 299 (368)
.......+.+..+++++.++++.+.+. .+.++++++++++++.|+++ +..... . ..+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~ 307 (392)
T 2z9v_A 232 VDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM----GLSVWAASDSIASPTTTA 307 (392)
T ss_dssp GGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSSSSGGGBCTTEEE
T ss_pred HHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----CCeeccCCccccCCceEE
Confidence 001123345677777777777766443 34566677777777777663 322111 1 1355666
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC----CCcccccc---CCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~----~~~~~~~~---~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+. +..+..++.+.|.++ ||.+.++. ...+|++. .++++++++++++|++++++
T Consensus 308 ~~~~-------------~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 308 VRTP-------------DGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp EECC-------------TTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EECC-------------CCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 6652 112246899999998 99998864 23456653 57999999999999998865
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=219.05 Aligned_cols=319 Identities=13% Similarity=0.040 Sum_probs=199.0
Q ss_pred CcHHHHHHHHH-HHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCCeEEE--eCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGE-TMKKGTSF-GAPCLLENVLAEMVISAVP-------SIEMVRF--VNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~-~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+|.+++++.+ .+.....+ +.+.....++++.+++++. .++++++ |+||++|++.+++++....+++.|
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~V 127 (412)
T 1yaa_A 48 VLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLV 127 (412)
T ss_dssp CCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEE
Confidence 44789999988 77532222 2244556778888887762 2679999 999999999997555444577899
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
++..++|++....+.. .|..+...+. ...... .|++++++.++++++.++++++...++++|.+.
T Consensus 128 l~~~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~-------------~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~ 193 (412)
T 1yaa_A 128 YLSKPTWANHMAIFEN-QGLKTATYPYWANETKS-------------LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP 193 (412)
T ss_dssp EEEESCCTTHHHHHHT-TTCCEEEEECEETTTTE-------------ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC
T ss_pred EEeCCCCccHHHHHHH-cCceEEEEeeecCCCCc-------------cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 9999999986543333 3333222111 000111 179999999986433355555455555566554
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcc---cCccc---cccC----CCcchhhhhhhccC-Cccceeee--e--
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ---EYFG----VTPDLTTLGKIIGG-GLPVGAYG--G-- 221 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g---~~~~~---~~~~----~~~di~s~sK~~~~-G~~iG~v~--~-- 221 (368)
+.+.+++|+++|++||+++|+||+|.++ +.+ ..... ...+ ....+.|+||.+++ |+|+||++ +
T Consensus 194 -~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~ 272 (412)
T 1yaa_A 194 -TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTK 272 (412)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCS
T ss_pred -CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecC
Confidence 4555999999999999999999999887 433 22112 1111 12235689999995 99999998 7
Q ss_pred ---hHH----HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 222 ---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--------EPGTYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 222 ---~~~----~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
+++ +++.+.. .....+.+++.+++.++.++++... -+.+.++++++++++.+.|++.....+
T Consensus 273 ~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 349 (412)
T 1yaa_A 273 QAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGN 349 (412)
T ss_dssp CTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 666 6666652 1223344558888888888876431 022344555555555555555321001
Q ss_pred CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHH
Q 017633 287 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVL 365 (368)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l 365 (368)
+....+..+.+.|..+ + ...+...+.++||.+.+ .+|+++. .+++++++++++|++++
T Consensus 350 ~~~~~~~~~~~~~~~~--------------~---~~~~~~~l~~~gi~v~~----~~Ris~~~~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 350 WDHIVNQCGMFSFTGL--------------T---PQMVKRLEETHAVYLVA----SGRASIAGLNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp CTHHHHCCSSEEECCC--------------C---HHHHHHHHHHHCEECCT----TSEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred eeeeccCceEEEeeCC--------------C---HHHHHHHHHhCCEEecc----CcEEEEccCCHhHHHHHHHHHHHHH
Confidence 2222222333434321 1 23454445578999997 3455444 48999999999999988
Q ss_pred hh
Q 017633 366 RQ 367 (368)
Q Consensus 366 ~~ 367 (368)
+.
T Consensus 409 ~~ 410 (412)
T 1yaa_A 409 RF 410 (412)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=211.84 Aligned_cols=324 Identities=13% Similarity=0.058 Sum_probs=213.0
Q ss_pred ceeccCCCcHHHHHHHHHHHHcCCCCCCC---ChhHHHHHHHHHhhCC-CCCeEE-EeCChHHHHHHHHHHHHHhcCCce
Q 017633 3 QLIILFPSYLQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 3 ~~~~~g~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~-~~~~v~-~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
...+++++++.+.+++.+++.+.....++ .+...+++++++++++ +.+.++ +++||++|+..+++.+ ..+++.
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~ 88 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDD 88 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCE
T ss_pred cceeecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCE
Confidence 34567877777777777776653222222 3457899999999998 555555 8999999999999766 467889
Q ss_pred EEEEcCCCCCCch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 78 IIKFEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 78 vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
|++.+++|++... ......|..+...+......+ |++++++++++. +++++++++.++++|..
T Consensus 89 Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~ 152 (416)
T 3isl_A 89 VLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVF--------------DPEDIIREIKKV--KPKIVAMVHGETSTGRI 152 (416)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEE
T ss_pred EEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCC--------------CHHHHHHHHhhC--CCcEEEEEccCCCCcee
Confidence 9999999887332 233333443332222111111 899999999842 56788888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC---
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--- 233 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~--- 233 (368)
.+ +++|.++|++||+++|+||+|+.. ........++.+..+.+++|++.++.++|++++++++++.+....
T Consensus 153 ~~----l~~i~~l~~~~~~~li~D~a~~~~--~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~ 226 (416)
T 3isl_A 153 HP----LKAIGEACRTEDALFIVDAVATIG--GCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVE 226 (416)
T ss_dssp CC----CHHHHHHHHHTTCEEEEECTTTTT--TSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC----
T ss_pred cC----HHHHHHHHHHcCCEEEEECCcccc--CCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhcccccc
Confidence 88 999999999999999999999621 111222333433334567799887778999999998887765321
Q ss_pred --------------------------------CccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHH
Q 017633 234 --------------------------------PMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGI 278 (368)
Q Consensus 234 --------------------------------~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l 278 (368)
........+.+..++.++.++++.+.+. ++.+++.++++++++.|
T Consensus 227 ~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 306 (416)
T 3isl_A 227 RGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGI 306 (416)
T ss_dssp --------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 0001123355777888877888766543 35566666666666666
Q ss_pred HHHHHhcCCceEEe---eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC----CCcccccc---
Q 017633 279 IDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--- 347 (368)
Q Consensus 279 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~----~~~~~~~~--- 347 (368)
++. +...... ..+.++++.+. +..+..++.+.|+++ ||.+.++. ...+|+++
T Consensus 307 ~~~----g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~ 369 (416)
T 3isl_A 307 KAM----GLRLFGDDSCKMPVVTCVEIP-------------GGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGY 369 (416)
T ss_dssp HHT----TCCBCSCGGGBCTTEEEEECC-------------TTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGG
T ss_pred HHc----CCEeccCccccCCcEEEEeCC-------------CCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccC
Confidence 663 3221111 12456666552 122357899999887 99999763 22345543
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 017633 348 AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 348 ~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++++++++++|++++.+
T Consensus 370 ~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 370 SCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp GCSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 33444499999999998865
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=208.47 Aligned_cols=316 Identities=14% Similarity=0.115 Sum_probs=209.5
Q ss_pred CCCcHHHHHHHHHHHHcCC---CCC------CCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHH--hcC
Q 017633 8 FPSYLQVLAALGETMKKGT---SFG------APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA--FTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~---~~~------~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~--~~~ 74 (368)
++.+|++++++.+++.+.. ..+ .+.+...+++++++++++. .+++++++||++|+..+++.++. ..+
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~ 112 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 112 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCC
Confidence 4578899999999987632 111 1346678999999999974 68999999999999999987642 356
Q ss_pred CceEEEEcCCCCCCchhh---hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
++.|++..++||+..... ....|..+...+... .+. .|+++++++++ ++++++++++.++
T Consensus 113 gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-------------~d~~~l~~~l~---~~~~~v~~~~~~n 175 (406)
T 1kmj_A 113 GDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGT-------------LQLETLPTLFD---EKTRLLAITHVSN 175 (406)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSC-------------BCGGGHHHHCC---TTEEEEEEESBCT
T ss_pred CCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC-CCC-------------cCHHHHHHHhc---cCCeEEEEeCCCc
Confidence 789999999998865432 222343332221111 111 17899999887 4688899988888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
++|.+.+ +++|+++|++||+++|+||+|+.... ......++ +|+ .|+||.+++ .++|++++++++++.+
T Consensus 176 ptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~~~--~d~~~~s~~K~~g~-~G~G~~~~~~~~~~~~ 246 (406)
T 1kmj_A 176 VLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQALD--CDFYVFSGHKLYGP-TGIGILYVKEALLQEM 246 (406)
T ss_dssp TTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CSEEEEEGGGTTSC-TTCEEEEECHHHHHHC
T ss_pred cccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCcccccC--CCEEEEEchhccCC-CCcEEEEEeHHHHhhc
Confidence 8898888 99999999999999999999974211 11222233 454 579999962 2389999999998887
Q ss_pred cCCCCcc------------------ccccCCCCHHHHHHHH-HHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 230 APAGPMY------------------QAGTLSGNPLAMTAGI-HTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 230 ~~~~~~~------------------~~~t~~~~~~~~~a~~-~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
....... .....+.+.+.+.+++ ++++.+.+. .+.++++++++++++.|++ .+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~ 322 (406)
T 1kmj_A 247 PPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES----VPD 322 (406)
T ss_dssp CCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----STT
T ss_pred CCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 6422100 0111234555555554 677766432 2344444555555554443 321
Q ss_pred ceEEee--ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC------------CCcccc--ccCCCH
Q 017633 288 AICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFT--SLAHSS 351 (368)
Q Consensus 288 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------~~~~~~--~~~~~~ 351 (368)
...... .++++.+.+. ..+..++.+.|.++||.+.++. ...+|+ ...+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~ 388 (406)
T 1kmj_A 323 LTLYGPQNRLGVIAFNLG--------------KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 388 (406)
T ss_dssp EEEESCTTCCSEEEEEET--------------TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCH
T ss_pred eEEecCCCcCCEEEEEEC--------------CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCH
Confidence 122233 4666666542 1124678889999999998764 133454 344599
Q ss_pred HHHHHHHHHHHHHHhh
Q 017633 352 DDIQHTITAAEKVLRQ 367 (368)
Q Consensus 352 ~~i~~~~~~l~~~l~~ 367 (368)
+|+++++++|+++++.
T Consensus 389 ~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 389 EEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=207.93 Aligned_cols=317 Identities=17% Similarity=0.172 Sum_probs=207.8
Q ss_pred cCCCcHHHHHHHHHHHHcCCCC--------CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH--hcCC
Q 017633 7 LFPSYLQVLAALGETMKKGTSF--------GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTGR 75 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~--~~~~ 75 (368)
.++.+|++++++.+++.+.... +.+.+...+++++++++++ +.+++++++||++|+..+++.+.. ..++
T Consensus 10 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~g 89 (384)
T 1eg5_A 10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRK 89 (384)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTC
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCC
Confidence 4578999999999998752110 0123456889999999997 567999999999999999987752 1467
Q ss_pred ceEEEEcCCCCCCchhhh--hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+.|++..++|++...... ...|..+...+... .+. .|+++|++.++ ++++++++++.++++
T Consensus 90 d~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~~~~v~~~~~~npt 152 (384)
T 1eg5_A 90 RTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGV-------------VKLEELEKLVD---EDTFLVSIMAANNEV 152 (384)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSC-------------BCHHHHHHHCC---TTEEEEEEESBCTTT
T ss_pred CEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CCc-------------cCHHHHHHHhC---CCCeEEEEECCCCCc
Confidence 899999988887544332 23343332211111 111 18999999987 368888888888888
Q ss_pred CcccCCHHHHHHHHHHHHHhC--CEEEEehhhhchhcccCccccccCCCcchh--hhhhhcc-CCccceeeeehHHH--H
Q 017633 154 GFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDI--M 226 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~--~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~-~G~~iG~v~~~~~~--~ 226 (368)
|.+.+ +++|.++|++|| +++|+||+|+ + .........+ .+|++ ++||.++ +| +||+++++++ .
T Consensus 153 G~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~-~~~~~~~~~~--~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~ 222 (384)
T 1eg5_A 153 GTIQP----VEDVTRIVKKKNKETLVHVDAVQT-I-GKIPFSLEKL--EVDYASFSAHKFHGPKG--VGITYIRKGVPIR 222 (384)
T ss_dssp CBBCC----HHHHHHHHHHHCTTCEEEEECTTT-T-TTSCCCCTTT--CCSEEEEEGGGGTSCTT--CEEEEECTTSCCC
T ss_pred ccccC----HHHHHHHHHhcCCceEEEEEhhhh-c-CCcccCchhc--CCCEEEecHHHhcCCCc--eEEEEEcCCCccc
Confidence 98888 999999999999 9999999996 3 1111222223 34554 6779877 35 7999988765 2
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEEEE
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFF 301 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 301 (368)
..+...+......+++.+.+++.++.++++.+.+ +++.++++++++++.+.|++ .++....+ ..+.++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~ 298 (384)
T 1eg5_A 223 PLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN----LGAHIITPLEISLPNTLSVS 298 (384)
T ss_dssp CSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT----TTCEECSCTTSBCTTEEEEE
T ss_pred cccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC----CCeEEeCCcccCCCCEEEEE
Confidence 2222111001124557788999888888886532 23445555555555555544 23321111 123455554
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------CccccccC--CCHHHHHH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFTSLA--HSSDDIQH 356 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~~~~~--~~~~~i~~ 356 (368)
+. ..+..++.+.|.++||.+.++.. ..+|+++. ++++|+++
T Consensus 299 ~~--------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~ 364 (384)
T 1eg5_A 299 FP--------------NIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY 364 (384)
T ss_dssp CT--------------TCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH
T ss_pred eC--------------CCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHH
Confidence 41 11246788999999999998531 23455544 79999999
Q ss_pred HHHHHHHHHhhC
Q 017633 357 TITAAEKVLRQI 368 (368)
Q Consensus 357 ~~~~l~~~l~~~ 368 (368)
++++|+++++++
T Consensus 365 ~~~~l~~~~~~~ 376 (384)
T 1eg5_A 365 FLKKIEEILSFL 376 (384)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=217.33 Aligned_cols=315 Identities=10% Similarity=0.039 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCC--CChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
.+|++++++.+++. .+.. ..+...+++++++++++ . .+++++++||++|++.+++.+ ..+++.|++...+|
T Consensus 34 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 34 LAPRVLAAGSLRMI---GHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI 108 (393)
T ss_dssp CCHHHHHHTTCCCC---CTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred CCHHHHHHhccccc---CcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence 35566666655322 1221 23567789999999987 3 346999999999999999877 46788999988777
Q ss_pred CCCc-hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 86 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
++.. .......|..+...+...... .|++++++.++++ +++++++++.++++|.+.+ ++
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 168 (393)
T 3kgw_A 109 WGMRAAEIADRIGARVHQMIKKPGEH--------------YTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LD 168 (393)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTCC--------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hhHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HH
Confidence 6432 222333344332222211111 1899999999852 5777788888888888888 89
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc--------
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-------- 236 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~-------- 236 (368)
+|.++|++||++||+||+|+.. +..+..+.++.+..+.++||+++++.++|++++++++++.+.......
T Consensus 169 ~i~~l~~~~~~~li~De~~~~g--~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
T 3kgw_A 169 GFGELCHRYQCLLLVDSVASLG--GVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDIT 246 (393)
T ss_dssp THHHHHHHTTCEEEEECTTTTT--TSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH
T ss_pred HHHHHHHHcCCEEEEECCcccc--CcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHH
Confidence 9999999999999999999611 112223334443334566799987778999999999888775322100
Q ss_pred ------------ccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceE----Eeeccce
Q 017633 237 ------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC----GGYISGM 297 (368)
Q Consensus 237 ------------~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~ 297 (368)
...+.+.+..+++++.++++.+.+ +++.+++.++++++++.|++. +.... ....+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~ 322 (393)
T 3kgw_A 247 YLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM----GLKFFVKDPEIRLPTI 322 (393)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSSSSGGGBCSSE
T ss_pred HHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----CCeeccCChhhcCCeE
Confidence 112345678888888888887654 334566666666776666664 32211 1112344
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC----Ccccccc---CCCHHHHHHHHHHHHHHHhhC
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSL---AHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~----~~~~~~~---~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.++.+. +..+..++.+.|+++ ||.+.++.. ..+|++. .++++++++++++|+++++++
T Consensus 323 ~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 323 TTVTVP-------------AGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp EEEECC-------------TTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCC-------------CCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 455542 222357899999988 999998642 2345543 359999999999999998653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-30 Score=235.65 Aligned_cols=320 Identities=11% Similarity=0.044 Sum_probs=203.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+++.... ++++.. ..++++.+++++ + +.+++++++||++|+..+++.+. .+++.|++..
T Consensus 45 ~~~~v~~a~~~~~~~~~-~~y~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~ 120 (392)
T 3b1d_A 45 VMPEVKQAIHDYAEQLV-YGYTYA-SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--KEGEAVLINS 120 (392)
Confidence 46789999988876522 223332 556666666654 2 36799999999999999998763 4568899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|++........ +..+.........+ ... .|++++++.+++ ++++++++...++++|.+.+ .++
T Consensus 121 p~~~~~~~~~~~~-g~~~~~~~~~~~~g--------~~~---~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-~~~ 185 (392)
T 3b1d_A 121 PVYPPFARSVRLN-NRKLVSNSLKEENG--------LFQ---IDFEQLENDIVE--NDVKLYLLCNPHNPGGRVWE-REV 185 (392)
Confidence 9999876443322 22221111100000 000 178888888863 25666666555556676554 445
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hccc----Cccccc--cCCCcchhhhhhhcc-CCccceeeeehH-HHHHHhcCCC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQEY--FGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAG 233 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~----~~~~~~--~~~~~di~s~sK~~~-~G~~iG~v~~~~-~~~~~~~~~~ 233 (368)
+++|+++|++||+++|+||+|+++ +.+. ...... .+..+++.|+||.++ +|+|+||+++++ ++++.+....
T Consensus 186 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 265 (392)
T 3b1d_A 186 LEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ 265 (392)
Confidence 999999999999999999999988 5442 112212 344566789999999 899999998864 4887776422
Q ss_pred Ccccccc-CCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-eEEEEeecCCCcc
Q 017633 234 PMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYN 309 (368)
Q Consensus 234 ~~~~~~t-~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 309 (368)
...+ .+.++++++++.++++...+ +.+.+++.++++.+.+.|++... +.. ...+.++ ++|+.+..
T Consensus 266 ---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~~~~~~~~~~i~~~~----- 334 (392)
T 3b1d_A 266 ---LVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAP--RLK-VMKPQGTYLIWLDFSD----- 334 (392)
Confidence 2222 24578888888888763211 22333444444444444443111 222 2233333 44555521
Q ss_pred cchhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHh
Q 017633 310 FEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...+..++++.|+ ++||.+.++. ...+|+++..+++++++++++|++++.
T Consensus 335 -------~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 335 -------YGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 0123467888897 7899999863 234677777789999999999998875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=210.76 Aligned_cols=315 Identities=13% Similarity=0.074 Sum_probs=206.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCC--ChhHHHHHHHHHhhCC-CC--CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 11 YLQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
+|++++++.+++.. +.++ .+...++++++++.++ +. +.+++++||++|++.+++.+ ..++|.|++..++|
T Consensus 31 ~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~~ 105 (376)
T 3f0h_A 31 SEEVRAIGAEQVPY---FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGGS 105 (376)
T ss_dssp CHHHHHHHTSCCCC---CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESSH
T ss_pred cHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCCh
Confidence 56777777654422 2222 2566788889999876 32 45566999999999999876 35678899998878
Q ss_pred CCCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 86 HGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
++.... .....+..+.....+....+ |+++++++++ ++++++++++.++++|.+.+ ++
T Consensus 106 ~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~ 164 (376)
T 3f0h_A 106 FGHRFVQLCEIHEIPYVALKLEHGKKL--------------TKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TM 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTCCC--------------CHHHHHTTTT---SCCCEEEEESEETTTTEECC----HH
T ss_pred hhHHHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHHHhhc---cCceEEEEecccCCcceecC----HH
Confidence 774332 22223433322222211111 8999988765 46788888877788898888 99
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC--cc------
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--MY------ 236 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~--~~------ 236 (368)
+|+++|++||+++|+||+|+.. +..+..+.++.+..+.++||+++++.++|++++++++++.+..... ..
T Consensus 165 ~i~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (376)
T 3f0h_A 165 MIGEFCKKNNMFFVCDCVSAFL--ADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDA 242 (376)
T ss_dssp HHHHHHHHTTCEEEEECTTTTT--TSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHH
T ss_pred HHHHHHHHcCCEEEEEcCcccc--CccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHH
Confidence 9999999999999999999743 1123344556655667889999866778999999998887763211 00
Q ss_pred ------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccceEEEEeecCCCcc
Q 017633 237 ------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYN 309 (368)
Q Consensus 237 ------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 309 (368)
....++.+..+++++.++++.+.+++..+.+.++.+.+++.+.+.+.+.+....... ...++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~------- 315 (376)
T 3f0h_A 243 LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP------- 315 (376)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE-------
T ss_pred HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC-------
Confidence 012345556566777778877755534556666666666666666555442211111 122222221
Q ss_pred cchhcccccHHHHHHHHHHHHc-CeeecCCC----CCccccc--cCCCHHHHHHHHHHHHHHHhh
Q 017633 310 FEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~----~~~~~~~--~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++.+.|+++ ||.++++. ...+|++ ..++++|+++++++|++++++
T Consensus 316 -------~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 316 -------TTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp -------SSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred -------CCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 222357899999998 99998763 2345553 467999999999999998864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-26 Score=208.10 Aligned_cols=318 Identities=13% Similarity=0.112 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHcCC------CCCCC---ChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHH--hcC
Q 017633 8 FPSYLQVLAALGETMKKGT------SFGAP---CLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA--FTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~------~~~~~---~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~--~~~ 74 (368)
++.++++++++.+++.+.. .+.++ .+...++++.++++++. .+++++++||++|++.+++.+.. ..+
T Consensus 38 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~ 117 (420)
T 1t3i_A 38 SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKA 117 (420)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCC
Confidence 3567899999999887631 11122 35678999999999974 58999999999999999987631 356
Q ss_pred CceEEEEcCCCCCCch---hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
++.|++..++|++... ......|..+...... ..+. .|+++++++++ ++++++++++.++
T Consensus 118 gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~-------------~d~~~l~~~l~---~~~~~v~~~~~~n 180 (420)
T 1t3i_A 118 GDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD-EQES-------------FDLEHFKTLLS---EKTKLVTVVHISN 180 (420)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC-TTSS-------------BCHHHHHHHCC---TTEEEEEEESBCT
T ss_pred CCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC-CCCC-------------cCHHHHHHhhC---CCceEEEEeCCcc
Confidence 7899999999998642 2222334333221111 1110 18999999987 4688888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
++|.+.+ +++|.++|++||+++|+||+|+.... ......++.+.-+.|+||.+++ .++|++++++++++.+..
T Consensus 181 ptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~~di~~~s~sK~~~~-~g~G~~~~~~~~~~~~~~ 253 (420)
T 1t3i_A 181 TLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY--PLDVQLIDCDWLVASGHKMCAP-TGIGFLYGKEEILEAMPP 253 (420)
T ss_dssp TTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHTCSEEEEEGGGTTSC-TTCEEEEECHHHHHHSCC
T ss_pred cccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCc--cCchhhcCCCEEEEehhhhcCC-CceEEEEEchHHHhhcCc
Confidence 8898888 99999999999999999999973211 1122334432224467797653 349999999999888764
Q ss_pred CCCcc-----------------ccccCCCCHHHHHHHHH-HHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhc-CCce
Q 017633 232 AGPMY-----------------QAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAI 289 (368)
Q Consensus 232 ~~~~~-----------------~~~t~~~~~~~~~a~~~-~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~ 289 (368)
..... ...+.+.+++.+.+++. +++.+.+ +.+.++++++++++++.|++ . +...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~ 329 (420)
T 1t3i_A 254 FFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ----IPQLRL 329 (420)
T ss_dssp CSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT----CTTEEE
T ss_pred eecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh----CCCeEE
Confidence 32110 01122445565555554 6776643 23445555555555555544 3 2221
Q ss_pred EEee-----ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC------------CCccccccC--CC
Q 017633 290 CGGY-----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFTSLA--HS 350 (368)
Q Consensus 290 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------~~~~~~~~~--~~ 350 (368)
..+. .++++++.+.. .+..++.+.|.++||.+.++. ...+|+++. ++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~ 395 (420)
T 1t3i_A 330 YGPNPKHGDRAALASFNVAG--------------LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 395 (420)
T ss_dssp ESCCGGGSCBCSEEEEEETT--------------BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred eCCCccccccCCEEEEEECC--------------CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCC
Confidence 1121 36666766521 124678889999999999872 334555444 59
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017633 351 SDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 351 ~~~i~~~~~~l~~~l~~ 367 (368)
++++++++++|++++++
T Consensus 396 ~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 396 KEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998865
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=208.89 Aligned_cols=315 Identities=15% Similarity=0.125 Sum_probs=208.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCC---hhHHHHHHHHHhhCCC---CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPC---LLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~---~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.+|++++++.+++. +.++. +...+++++++++++. .+++++++||++|+..+++.+. .+++.|++.++
T Consensus 15 ~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--~~gd~vi~~~~ 88 (366)
T 1m32_A 15 TSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--GPQDKVLIVSN 88 (366)
T ss_dssp CCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--CTTCCEEEEES
T ss_pred CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc--CCCCeEEEEeC
Confidence 56788888866431 22221 6678999999999872 2479999999999999998763 45678888877
Q ss_pred CCCCCc-hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 84 CYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
.+|+.. .......|..+....... .+ ..|+++++++++++ .+++++++...++++|.+.+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---- 149 (366)
T 1m32_A 89 GAYGARMVEMAGLMGIAHHAYDCGE-VA-------------RPDVQAIDAILNAD-PTISHIAMVHSETTTGMLNP---- 149 (366)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEECCT-TS-------------CCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----
T ss_pred CCccHHHHHHHHHhCCceEEEeCCC-CC-------------CCCHHHHHHHHhcC-CCeEEEEEecccCCcceecC----
Confidence 777642 233333344433222211 11 12899999999864 23566655555567788888
Q ss_pred HHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHhcCCCC-ccc--
Q 017633 163 LNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MYQ-- 237 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~-~~~-- 237 (368)
+++|.++|++||+++|+||+|+.... ......+ .+|+ .|+||+++++.++|++++++++++.+..... +..
T Consensus 150 l~~i~~l~~~~~~~li~Dea~~~~~~--~~~~~~~--~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 1m32_A 150 IDEVGALAHRYGKTYIVDAMSSFGGI--PMDIAAL--HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL 225 (366)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCccccCc--Ccccccc--CccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccH
Confidence 99999999999999999999963211 1122222 3454 4788999766678999999988877764211 100
Q ss_pred ------------cccCCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceE
Q 017633 238 ------------AGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMF 298 (368)
Q Consensus 238 ------------~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~ 298 (368)
...++.+..+++++.++++.+.+.+ +.++++++++++++.|++. +.....+ ..+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~ 301 (366)
T 1m32_A 226 YAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL----GFNTLLDDELHSPIIT 301 (366)
T ss_dssp HHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCGGGBCSSEE
T ss_pred HHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC----CCeeccCchhcCceEE
Confidence 0125778888888888888765433 4566666666666666653 3221111 234477
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---CCccccc--cCCCHHHHHHHHHHHHHHHhhC
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~~~~~~--~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++.+... ...+..++.+.|.++||.+.++. ...+|++ ..++++++++++++|+++++++
T Consensus 302 ~~~~~~~-----------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 302 AFYSPED-----------PQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp EEECCCC-----------TTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred EEEcCcc-----------CCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7765310 01235789999999999998874 2345543 4468999999999999988653
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=213.41 Aligned_cols=314 Identities=15% Similarity=0.105 Sum_probs=208.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CC--CeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
.+|++++++.+++... ......+...+++++++++++ +. +++++++||++|+. ++..+ ..+++.|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF-TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCT-TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhcccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCCcc
Confidence 4567777776654321 111224567889999999987 44 88999999999999 88655 457889999999988
Q ss_pred CCchhhh-hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+.....+ ...|..+...+.... +. .|++++++.++++ +++++++++.++++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPG-DY-------------VKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTT-CC-------------CCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCC-CC-------------CCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 7433222 223333322222111 11 1899999999853 5888888888888898888 999
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHh-cCCCC---------c
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV-APAGP---------M 235 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~-~~~~~---------~ 235 (368)
|.++|++||+++|+||+|+... .......++.+..+.++||+++++.++|++++++++++.+ ..... .
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNW 226 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHH
T ss_pred HHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHH
Confidence 9999999999999999996221 1122223333333457779998777899999999887776 21100 0
Q ss_pred c---------ccccC-CCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEe----eccceE
Q 017633 236 Y---------QAGTL-SGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGG----YISGMF 298 (368)
Q Consensus 236 ~---------~~~t~-~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~~~ 298 (368)
. ....+ +.+...+.++.++++.+.+. .+.++++++++++.+.|++. +...... ..+.++
T Consensus 227 ~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~ 302 (384)
T 3zrp_A 227 LPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL----GLEIVARRPESYSNTVT 302 (384)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSCSSGGGBCSSEE
T ss_pred HHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC----CCeEccCcccccCccEE
Confidence 0 11122 45677777777788766543 35566666666666666654 3221111 134555
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC---Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.+. . .+..++.+.|.++||.+.++.. ..+|+ ...++++++++++++|++++++
T Consensus 303 ~~~~~-------------~-~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 303 GVILK-------------V-ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp EEECS-------------S-SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECC-------------C-CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 66652 1 2357899999999999998752 23454 3457999999999999998864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=207.30 Aligned_cols=302 Identities=15% Similarity=0.065 Sum_probs=200.1
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++ .+|++++++.+++.....| +.....+++++++++++ +++++++|+||++++..+++.+. ++.|++..+
T Consensus 25 ~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~----gd~Vi~~~p 97 (350)
T 3fkd_A 25 WTDG-DKDHLEKHLVENLNCIRHY--PEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR----GSRSLIAIP 97 (350)
T ss_dssp CCCS-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT----TCEEEEEES
T ss_pred CCCC-CCHHHHHHHHHhHhHHhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC----CCEEEEeCC
Confidence 3444 7889999999887543333 33334799999999998 67899999999999999998762 789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-CCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
+|++...... ..|..+. .++. ++.+.+. ++++++++++..+|++|.+.+
T Consensus 98 ~~~~~~~~~~-~~g~~~~-------------------~v~~~~~~~~~~------~~~~~~v~i~~p~nptG~~~~---- 147 (350)
T 3fkd_A 98 SFAEYEDACR-MYEHEVC-------------------FYPSNEDIGEAD------FSNMDFCWLCNPNNPDGRLLQ---- 147 (350)
T ss_dssp CCHHHHHHHH-HTTCEEE-------------------EEETTSCGGGSC------CTTCSEEEEESSCTTTCCCCC----
T ss_pred CcHHHHHHHH-HcCCeEE-------------------EEecCCccccCc------cCCCCEEEEeCCCCCcCCCCC----
Confidence 9887643333 2333222 1111 1111110 025566666555666777777
Q ss_pred HHHHHHHHHHhC-CEEEEehhhhch-hcccCc--cccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 163 LNAIRRITKENG-ALLIFDEVMTGF-RLAYGG--AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 163 l~~i~~l~~~~~-~~li~De~~~~~-~~g~~~--~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
++++.++++.++ .++|+||+|.++ ..+... ..+..+....+.|+||.++ +|+|+||+++++++++.+....
T Consensus 148 ~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~---- 223 (350)
T 3fkd_A 148 RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS---- 223 (350)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC----
T ss_pred HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC----
Confidence 444445554443 499999999887 444321 1222333345678999999 8999999999999999887533
Q ss_pred cccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
.+++.+++++.++.++++.... .+..++..++++++.+.|++ .+.....+..+.++++.+..
T Consensus 224 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~------------ 286 (350)
T 3fkd_A 224 -TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNR----LDGVEVHPSGTTFFLLRLKK------------ 286 (350)
T ss_dssp -CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHH----STTEEECCCSSSEEEEEESS------------
T ss_pred -CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc----CCCcEECCCCCcEEEEECCC------------
Confidence 3557889999998888874431 12233333556666665554 32222344556677766631
Q ss_pred ccHHHHHHHHHHHH-cCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 317 ETTKFARFYRGMLE-EGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 317 ~~~~~~~~~~~l~~-~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. +..++.+.|++ +||.+.++.. ..+|+++. +++++++++++|++++.+
T Consensus 287 -~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 287 -G-TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -S-CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC
T ss_pred -C-CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence 1 35789999999 8999998742 23556544 788999999999988754
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=210.28 Aligned_cols=294 Identities=11% Similarity=0.059 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
.+|++++++.+++.....++++.....++++.++++++ +.+++++++||++++..+++.+ ++.|++. ++|
T Consensus 33 ~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-----gd~Vl~~-p~y 106 (335)
T 1uu1_A 33 FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-----DRSVFFP-PTY 106 (335)
T ss_dssp CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS-----SEEEECS-SSC
T ss_pred CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh-----CCcEEEC-CCc
Confidence 68899999998873322223344447889999999886 4689999999999999999755 5789888 999
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE-EcccCCCCCcccCCHHHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~l~ 164 (368)
++..... ...|..+... +..... .+ |++++ +++++++ ++| +|++|.+.+ .+
T Consensus 107 ~~~~~~~-~~~g~~~~~v--~~~~~~---------~~---d~~~l--------~~~~~v~l~~p-~nptG~~~~----~~ 158 (335)
T 1uu1_A 107 SCYRIFA-KAVGAKFLEV--PLTKDL---------RI---PEVNV--------GEGDVVFIPNP-NNPTGHVFE----RE 158 (335)
T ss_dssp HHHHHHH-HHHTCEEEEC--CCCTTS---------CC---CCCCC--------CTTEEEEEESS-CTTTCCCCC----HH
T ss_pred HHHHHHH-HHcCCeEEEe--ccCCCC---------CC---CHHHc--------CCCCEEEEeCC-CCCCCCCCC----HH
Confidence 8865433 3334333221 111110 01 34433 1456555 555 555677666 44
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCcc-ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~-~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~ 242 (368)
++.++++.+| ++|+||+|+++..+.... .+..+....+.|+||.++ +|+|+||+++++++++.+.... .+++
T Consensus 159 ~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~-----~~~~ 232 (335)
T 1uu1_A 159 EIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR-----LPFN 232 (335)
T ss_dssp HHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHS-----CTTC
T ss_pred HHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhc-----CCCC
Confidence 5555555558 899999998772122111 222334455679999999 8999999999999888776321 3457
Q ss_pred CCHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 243 GNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
.|++++.++.++++... -+.+.++++++++++.+.|++. +.. ..+..++++|+.+. . .+.
T Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~-------------~-~~~ 293 (335)
T 1uu1_A 233 VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITDSRGNFVFVFME-------------K-EEK 293 (335)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCCCCSSEEEEECC-------------T-HHH
T ss_pred cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcE-EcCCCCeEEEEECC-------------C-CCH
Confidence 89999999888887421 0223445555555555555553 332 22344667776652 2 345
Q ss_pred HHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHH
Q 017633 322 ARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 364 (368)
.++.+.|.++||.+.+. ...+|+++. +++|+++++++|+++
T Consensus 294 ~~~~~~l~~~gi~v~~~-~~~iRis~~-~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 294 ERLLEHLRTKNVAVRSF-REGVRITIG-KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHHTEEEEEE-TTEEEEECC-CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCEEEEEC-CCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 78999999999999983 345666654 467899999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=219.18 Aligned_cols=299 Identities=10% Similarity=0.030 Sum_probs=186.4
Q ss_pred CCChhHHHHHHHHHhhC-C-C-----CCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh---hcC
Q 017633 30 APCLLENVLAEMVISAV-P-S-----IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAG 97 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~-~-~-----~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~ 97 (368)
.+.....++++.+++++ + + .+++++ |+||++|+..++.+.....+++.|++..++|+.+...+.. ..|
T Consensus 91 ~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G 170 (448)
T 3meb_A 91 PPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLK 170 (448)
T ss_dssp CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTT
T ss_pred CCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCC
Confidence 34456678888888886 4 3 479999 9999999998664443445788999999888765443330 334
Q ss_pred CCccccCC-CCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC
Q 017633 98 SGVATLGL-PDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 175 (368)
Q Consensus 98 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~ 175 (368)
..+...++ ... .+.. |++++++.+++.+++++++++...+|++|.+.+ .+.+++|+++|++||+
T Consensus 171 ~~v~~~~~~~~~~~~~~-------------d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~l~~~~~~ 236 (448)
T 3meb_A 171 VPYKEYTYLRKDGELEI-------------DFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFT-EAQWKELLPIMKEKKH 236 (448)
T ss_dssp SCCEEECCBCTTSCSSB-------------CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTC
T ss_pred CeEEEEeccccccCCCc-------------CHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCC-HHHHHHHHHHHHHCCC
Confidence 43332222 111 1111 899999999875445666666666666676554 4459999999999999
Q ss_pred EEEEehhhhch-hccc---Ccccccc-CCCcc---hhhhhhhcc-CCccceee--ee---------hH----HHHHHhcC
Q 017633 176 LLIFDEVMTGF-RLAY---GGAQEYF-GVTPD---LTTLGKIIG-GGLPVGAY--GG---------RR----DIMEMVAP 231 (368)
Q Consensus 176 ~li~De~~~~~-~~g~---~~~~~~~-~~~~d---i~s~sK~~~-~G~~iG~v--~~---------~~----~~~~~~~~ 231 (368)
++|+||+|.++ ..+. ......+ +..++ +.||||.++ +|+|+||+ ++ ++ ++++.+.
T Consensus 237 ~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~- 315 (448)
T 3meb_A 237 IAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT- 315 (448)
T ss_dssp EEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH-
T ss_pred EEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH-
Confidence 99999999887 4321 1111111 12223 568999999 79999997 55 34 4555544
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHHHHhcC------CceEEeeccce
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLK--------EPGTYEYLNKITGELTQGIIDAGKKAG------HAICGGYISGM 297 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~~~~ 297 (368)
......+.+++.+++.++.++++... -+.+.++++++++++++.|++... .+ .....+..+.+
T Consensus 316 --~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~~~~~~~~~~~~~~g~~ 392 (448)
T 3meb_A 316 --LQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKT-PGPGSKGTWDHILTAIGMF 392 (448)
T ss_dssp --HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCSTTTCCCTHHHHCCSSE
T ss_pred --HHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCcCcccccceeCCCceEE
Confidence 12233455667788888777664210 022334445555555555544210 01 11112233334
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHH-HHcCeeecCCCCCccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
.|..+ + .++...| .++||.+.++. .|+++.. +++++++++++|++++.+
T Consensus 393 ~~~~~--------------~----~~~~~~ll~~~gV~v~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 393 TFTGL--------------T----PEHVDYLKEKWSIYLVKAG---GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp EECCC--------------C----HHHHHHHHHHHCEEECSGG---GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EecCC--------------C----HHHHHHHHHhCCEEEeCCC---cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 44332 1 3555566 46799999964 2665554 888899999999999865
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=204.66 Aligned_cols=317 Identities=10% Similarity=0.048 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHcCCC-----CCC---CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHH-HhcCCceE
Q 017633 9 PSYLQVLAALGETMKKGTS-----FGA---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR-AFTGRERI 78 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~-~~~~~~~v 78 (368)
+.+|++++++.+++..... +.+ ..+...+++++++++++ +++++++++||++++..+++.+. ...+++.|
T Consensus 37 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~v 116 (406)
T 3cai_A 37 LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEV 116 (406)
T ss_dssp CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEE
Confidence 5788999999998876321 111 24567899999999987 56899999999999999886541 23567899
Q ss_pred EEEcCCCCCCchhhhhh---cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 79 IKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
++.+++|++........ .|..+.........+.. |+++|++.++ ++++++++++.++++|.
T Consensus 117 i~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-------------d~~~l~~~l~---~~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 117 IVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGEL-------------PTWQWESLIS---KSTRLVAVNSASGTLGG 180 (406)
T ss_dssp EEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCC-------------CGGGHHHHCC---TTEEEEEEESBCTTTCB
T ss_pred EEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCc-------------CHHHHHHHhC---CCceEEEEeCCcCCccc
Confidence 99998888765544432 34433222221111111 7899999886 46888888888888898
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchhhhhhhccCCccce-eeeehHHHHHHhcCCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVG-AYGGRRDIMEMVAPAG 233 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG-~v~~~~~~~~~~~~~~ 233 (368)
+.+ +++|.++|++||+++|+||+|+. |.. .....++.+.-+.|+||.+++ ++| ++++++++++.+....
T Consensus 181 ~~~----l~~i~~l~~~~~~~li~D~a~~~---g~~~~~~~~~~~d~~~~s~~K~~g~--~~G~~~~~~~~~~~~l~~~~ 251 (406)
T 3cai_A 181 VTD----LRAMTKLVHDVGALVVVDHSAAA---PYRLLDIRETDADVVTVNAHAWGGP--PIGAMVFRDPSVMNSFGSVS 251 (406)
T ss_dssp BCC----CHHHHHHHHHTTCEEEEECTTTT---TTCCCCHHHHCCSEEEEEGGGGTSC--SCEEEEESCHHHHHTSCCCC
T ss_pred cCC----HHHHHHHHHHcCCEEEEEccccc---CCCCCCchhcCCCEEEeehhhhcCC--CcCeEEEEehHHHhhcCCcc
Confidence 888 89999999999999999999962 221 223334433334578898764 399 9999998888776432
Q ss_pred Cc------cccccCCCCHHHHHHHHHHHHHHccCC-------------HHHHHHHHHHHHHHHHHHHHHhcCCceEEee-
Q 017633 234 PM------YQAGTLSGNPLAMTAGIHTLKRLKEPG-------------TYEYLNKITGELTQGIIDAGKKAGHAICGGY- 293 (368)
Q Consensus 234 ~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 293 (368)
.. ......+.+..+++++.++++.+.+.+ +.+.+.++.+.+++.+.+.+.+.+.......
T Consensus 252 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 331 (406)
T 3cai_A 252 TNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP 331 (406)
T ss_dssp SCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC
T ss_pred cCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc
Confidence 10 011133567777777777888775422 2344444444555555554444321111111
Q ss_pred --ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-------------CCccccc--cCCCHHHHHH
Q 017633 294 --ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEAGFTS--LAHSSDDIQH 356 (368)
Q Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------~~~~~~~--~~~~~~~i~~ 356 (368)
.++++++.+. ..+..++.+.|.++||.+.++. ...+|++ ..++++++++
T Consensus 332 ~~~~~~~~~~~~--------------~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~ 397 (406)
T 3cai_A 332 EAQIPVVSFAVH--------------KVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQ 397 (406)
T ss_dssp SSBCSEEEEEET--------------TBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHH
T ss_pred cccCCEEEEEEC--------------CcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHH
Confidence 2445566542 1124678899999999998764 1345554 4458999999
Q ss_pred HHHHHHHH
Q 017633 357 TITAAEKV 364 (368)
Q Consensus 357 ~~~~l~~~ 364 (368)
++++|+++
T Consensus 398 ~~~~l~~~ 405 (406)
T 3cai_A 398 LVRALASL 405 (406)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99998753
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=212.28 Aligned_cols=314 Identities=15% Similarity=0.124 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC-CChhHHHHHHHHHhhCC-CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 8 FPSYLQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
++.+|++++++.+++.. .++. ..+...++++++++.++ +.+ ++++++||++|+..+++.+ ..+++.|++..++
T Consensus 43 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~--~~~gd~Vl~~~~~ 118 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA--VEPGDVVLIGVAG 118 (393)
T ss_dssp CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESS
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc--cCCCCEEEEEcCC
Confidence 34677888888776543 2211 12567888899998887 556 8999999999999999877 3567899999999
Q ss_pred CCCCc-hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 85 YHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
|++.. .......|..+...+.+. .+ ..|+++|++.++++ +++++++++.++++|.+.+ +
T Consensus 119 ~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----l 178 (393)
T 1vjo_A 119 YFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALVHAETSTGARQP----L 178 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred hhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEeccCCCcceecc----H
Confidence 98721 222233343332222111 11 12899999999842 4667777777788888887 8
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHHhcCC----CCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA----GPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~----~~~~~ 237 (368)
++|+++|++||+++|+||+|+ + ........ ...+|++ ++||+++++.|+|++++++++++.+... .....
T Consensus 179 ~~i~~l~~~~~~~li~Dea~~-~-g~~~~~~~--~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 179 EGVGELCREFGTLLLVDTVTS-L-GGVPIFLD--AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp TTHHHHHHHHTCEEEEECTTT-T-TTSCCCTT--TTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHHcCCEEEEECCcc-c-cCcCCccc--ccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence 999999999999999999997 3 11112222 2344554 6779998555999999999888877421 11111
Q ss_pred ------------cccC-CCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEee---ccceE
Q 017633 238 ------------AGTL-SGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGY---ISGMF 298 (368)
Q Consensus 238 ------------~~t~-~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~ 298 (368)
..++ +.+.++++++.++++.+.++ .+.++++++++++.+.|++. ++....+. .+.++
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~ 330 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI----GLSLHVEKEYRLPTLT 330 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCGGGBCSSEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----CCcccCCccccCCcEE
Confidence 1233 67888999988898876432 34566677777777777653 32211111 12345
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC----Cccccc---cCCCHHHHHHHHHHHHHHHh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTS---LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~----~~~~~~---~~~~~~~i~~~~~~l~~~l~ 366 (368)
++.+. ...+..++.+.|.++ ||.+.++.. ..+|++ +..+++++++++++|+++++
T Consensus 331 ~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 331 TVCIP-------------DGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp EEECC-------------TTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEEcC-------------CCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 55541 122357899999988 999998742 345555 45678889999999998763
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=206.87 Aligned_cols=319 Identities=13% Similarity=0.035 Sum_probs=213.2
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCC--------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh----
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGA--------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 72 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~---- 72 (368)
..++.+|++++++.+++........ ..+...+++++++++++ +.+++++++||+++++.+++.+...
T Consensus 36 ~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~ 115 (416)
T 1qz9_A 36 SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATR 115 (416)
T ss_dssp TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccccccc
Confidence 3467888999999999875321111 13566899999999998 5689999999999999998776433
Q ss_pred cCCceEEEEcCCCCCCchhhhh-hcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 73 TGRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
.+++++|+.++.+|+....... .... . ..+.+++.++. +++++++++ ++++++++++.++
T Consensus 116 ~~gd~vii~~~~~~~~~~~~~~~~~~~----------~----~~g~~~~~v~~--~~~l~~~i~---~~~~~v~~~~~~n 176 (416)
T 1qz9_A 116 SPERRVIVTETSNFPTDLYIAEGLADM----------L----QQGYTLRLVDS--PEELPQAID---QDTAVVMLTHVNY 176 (416)
T ss_dssp STTCCEEEEETTSCHHHHHHHHHHHHH----------H----CSSCEEEEESS--GGGHHHHCS---TTEEEEEEESBCT
T ss_pred CCCCcEEEEcCCCCCchHHHHHHHHHH----------h----cCCceEEEeCc--HHHHHHHhC---CCceEEEEecccc
Confidence 4566777777777764333221 1100 0 00112333333 677888886 4788898888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccc-eeeeehHHHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPV-GAYGGRRDIMEM 228 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~i-G~v~~~~~~~~~ 228 (368)
++|.+.+ +++|.++|++||+++|+||+|+.-. .......++ +|++ +++|++++|.++ |++++++++++.
T Consensus 177 ptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~--~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~ 248 (416)
T 1qz9_A 177 KTGYMHD----MQALTALSHECGALAIWDLAHSAGA--VPVDLHQAG--ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL 248 (416)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHT--CSEEEECSSSTTCCCTTCCCEEEECTTTTTT
T ss_pred CcccccC----HHHHHHHHHHcCCEEEEEccccccC--cCCChhhcC--CCEEEecCcccCCCCCCCeEEEEECHHHHhc
Confidence 8898888 9999999999999999999996211 111222333 4554 567999888888 999999887766
Q ss_pred hcCCCCc--------------------cccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhc
Q 017633 229 VAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 229 ~~~~~~~--------------------~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
+...... ......+.+..+++++.++++.+.++. +.++++++++++++.|.+.....
T Consensus 249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 328 (416)
T 1qz9_A 249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAH 328 (416)
T ss_dssp SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6532110 011223567788888888888775433 56667777777777776642200
Q ss_pred CCceEEe----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccccc---CCCHHHHHHHH
Q 017633 286 GHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL---AHSSDDIQHTI 358 (368)
Q Consensus 286 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~---~~~~~~i~~~~ 358 (368)
+.....+ ..++++++.+. + ..++.+.|.++||.+...+...+|+++ .++++|+++++
T Consensus 329 g~~~~~~~~~~~~~~~~~~~~~-------------~---~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~ 392 (416)
T 1qz9_A 329 ELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAV 392 (416)
T ss_dssp CCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHH
T ss_pred CeEEeCCCCHHHcCCEEEEecC-------------C---HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHH
Confidence 2221111 13456666541 1 467899999999998765445566643 57999999999
Q ss_pred HHHHHHHhh
Q 017633 359 TAAEKVLRQ 367 (368)
Q Consensus 359 ~~l~~~l~~ 367 (368)
++|++++++
T Consensus 393 ~~l~~~~~~ 401 (416)
T 1qz9_A 393 QILGEILDR 401 (416)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998864
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=219.95 Aligned_cols=342 Identities=13% Similarity=0.006 Sum_probs=198.2
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----CC------CCeEEEeCChHHHHHHHHHHHH---Hh
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----PS------IEMVRFVNSGTEACMGVLRLAR---AF 72 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~------~~~v~~~~~gt~a~~~al~~~~---~~ 72 (368)
..++.+|++++++.+++.. ..|+.+.....++++.+++++ ++ .+++++|+||++|+..++..+. ..
T Consensus 112 ~~~~~~~~~v~a~~~~~~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 112 ELGLNRDKVVAEWVNGAVA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp TTCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred CCCcCCcHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence 3455678888888887765 334334443444555555443 11 4799999999999999997521 12
Q ss_pred cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCC---CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
.+++.|++..++|++...... ..+..+....+.. ..... |+++|+++++ +++++++++..
T Consensus 191 ~~gd~Viv~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~-------------d~~~l~~~l~---~~~k~v~l~~p 253 (533)
T 3f6t_A 191 KKGDKIAINEPIFTPYLRIPE-LKDYELVEVDLHSYEKNDWEI-------------EPNEIEKLKD---PSIKALIVVNP 253 (533)
T ss_dssp CTTCEEEEESSCCHHHHTSGG-GGGSEEEEECCCEETTTTSEE-------------CHHHHHHHSC---TTEEEEEEESS
T ss_pred CCcCEEEEcCCCcHHHHHHHH-HcCCeEEEEEecCCcccCCCC-------------CHHHHHHHhC---CCCeEEEEeCC
Confidence 467899999998887543332 2333222211110 01111 7999999886 46777777655
Q ss_pred CCCCCcccCCHHHHHHHHHHHH-HhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHH--
Q 017633 150 VGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD-- 224 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~-~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~-- 224 (368)
++++|.+.+ .+.+++|+++|+ +||+++|+||+|.++ ...........+....+.||||.++ +|+|+||++++++
T Consensus 254 ~NPtG~~~~-~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 254 TNPTSKEFD-TNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332 (533)
T ss_dssp CTTTCBCCC-HHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCH
T ss_pred CCCCccccC-HHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHH
Confidence 555676555 445999999999 589999999999987 4222111111223355679999998 8999999988765
Q ss_pred ---HHHHhc-----------------------------CCCCccccccCCCCHHHHHHHH-HHHHHHc-------cCCHH
Q 017633 225 ---IMEMVA-----------------------------PAGPMYQAGTLSGNPLAMTAGI-HTLKRLK-------EPGTY 264 (368)
Q Consensus 225 ---~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~a~~-~~l~~~~-------~~~~~ 264 (368)
+++.+. .........+.+.+++++.++. .++..+. .+...
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~ 412 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYI 412 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHH
T ss_pred HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHH
Confidence 443321 0012223455566777776632 1223332 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh---cccccHHHHHHHHHHH-HcCeeecCCCC
Q 017633 265 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA---KKSETTKFARFYRGML-EEGVYFAPSQF 340 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~Gi~~~~~~~ 340 (368)
++.+++.+..++.+.+.+. .+.....+..+.++|+.+........... ......+..+++..++ ++||.+.++..
T Consensus 413 ~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~ 491 (533)
T 3f6t_A 413 DIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVG 491 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEE
T ss_pred HHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcc
Confidence 3333333333333333332 33332334455566666531000000000 0000012345665555 67999999742
Q ss_pred -----CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 341 -----EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 341 -----~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
..+|+++. .+++++++++++|++++.+
T Consensus 492 f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 492 FGAKPGELRVSQANLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp ECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 34577766 5999999999999998864
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=218.64 Aligned_cols=316 Identities=11% Similarity=0.010 Sum_probs=191.1
Q ss_pred HHHHHHHHHHH-Hc-CCCCCCCChhHHHHHHHHHhhC-C------CCC--eEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 12 LQVLAALGETM-KK-GTSFGAPCLLENVLAEMVISAV-P------SIE--MVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 12 ~~v~~a~~~~~-~~-~~~~~~~~~~~~~l~~~l~~~~-~------~~~--~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
+.++++.. .+ +. ....|.+.....+|++++++++ + ..+ ++++|+||++|+..++.++..+.+ |.|++
T Consensus 50 ~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv 127 (405)
T 3k7y_A 50 DSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYV 127 (405)
T ss_dssp HHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred HHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEE
Confidence 45666655 33 33 2333445567778888888865 2 124 469999999999999977654336 99999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCC-CCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc-CCCCCccc
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGL-PDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIA 157 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~-~~~~g~~~ 157 (368)
.+++|..+...+. ..|..+...++ ... .++ |++++++.+++. ++++++++++. +|++|.++
T Consensus 128 ~~P~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~ 191 (405)
T 3k7y_A 128 TNPPYINHVNMIE-SRGFNLKYINFFDYNLIDI--------------NYDLFLNDLRNI-PNGSSVILQISCYNPCSVNI 191 (405)
T ss_dssp ESSCCHHHHHHHH-TTTCEEEEECCEETTTTEE--------------CHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCC
T ss_pred eCCCCHhHHHHHH-HcCCeEEEEeccccccCCc--------------CHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCC
Confidence 9999987654433 33333322221 111 111 899999999854 24567777766 45566554
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC---ccccc----cCCCcchhhhhhhcc-CCccceeeee---hHHH
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQEY----FGVTPDLTTLGKIIG-GGLPVGAYGG---RRDI 225 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~---~~~~~----~~~~~di~s~sK~~~-~G~~iG~v~~---~~~~ 225 (368)
+.+++++|+++|++||+++|+||+|.++ ..+.. ..... ......+.||||.|+ +|||+||+++ ++++
T Consensus 192 -s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~ 270 (405)
T 3k7y_A 192 -EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEE 270 (405)
T ss_dssp -CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHH
T ss_pred -CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHH
Confidence 5555999999999999999999999988 43210 11111 112233568999999 9999999743 5665
Q ss_pred HHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHc-cCCH-------HHHHHHHHHHHHHHHHHHHHhcCC----ceEEe
Q 017633 226 MEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGT-------YEYLNKITGELTQGIIDAGKKAGH----AICGG 292 (368)
Q Consensus 226 ~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~-~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~----~~~~~ 292 (368)
++.+... .........+.+.+++.++..+++.-. .+.| +++++++++.+.+.|++-..+.+. ....+
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p 350 (405)
T 3k7y_A 271 KKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK 350 (405)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS
T ss_pred HHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC
Confidence 5443210 011111222456677777666664210 0112 333455555555555410003332 11223
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhhC
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~ 368 (368)
..|.++|+.+ + .+++..|.++||.+.|++ |++++ .+++++++++++|++++.++
T Consensus 351 ~gg~f~~~~l-------------~-----~~~~~~L~~~gV~v~p~~----Ris~a~~~~~~i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 351 QRGLFSFVPL-------------L-----AKIAEHLKTHHIYIINNG----RINVSGITKNNVDYIADKICLSLSQI 405 (405)
T ss_dssp CCSSEEECGG-------------G-----GGGTTTTTTTTEECCTTS----EEEGGGCCTTHHHHHHHHHHHHHHCC
T ss_pred CceEEEecCC-------------C-----HHHHHHHHHCCEeecCCC----eEEEeccCHHHHHHHHHHHHHHHhhC
Confidence 3444555432 1 133556677899999975 67664 58899999999999998753
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=208.81 Aligned_cols=314 Identities=14% Similarity=0.095 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--ChhHHHHHHHHHhhCC-CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
.+|++++++.+.+ ..+..+ .+...+++++++++++ +.+ .+++++||++|++.+++.+ ..+++.|++.+++|
T Consensus 24 ~~~~v~~a~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQL---IGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCC---CCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 3455666655432 122211 2456889999999887 444 4889999999999999877 46788999999999
Q ss_pred CCCc-hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 86 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|+.. .......|..+...+.+. .+.. |+++++++++++ ++++++++++++++|.+.+ ++
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 158 (411)
T 3nnk_A 99 FGHLLCEIARRCRAEVHTIEVPW-GEVF-------------TPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LA 158 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCT-TCCC-------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hHHHHHHHHHHcCCeEEEEecCC-CCCC-------------CHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HH
Confidence 8742 223333344332222211 1111 899999999853 5778888888888898888 89
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC----------
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP---------- 234 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~---------- 234 (368)
+|+++|++||+++|+||+|+.. ........++.+..+.+++|+++++.++|++++++++++.+.....
T Consensus 159 ~i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 236 (411)
T 3nnk_A 159 ELGEICRRYDALFYTDATASLG--GNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAH 236 (411)
T ss_dssp THHHHHHHHTCEEEEECTTTBT--TBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTC
T ss_pred HHHHHHHHcCCEEEEECCcccC--CcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccc
Confidence 9999999999999999998621 1122333445444456788998877789999999998877654220
Q ss_pred -----------------------ccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 235 -----------------------MYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 235 -----------------------~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
.......+.+..+++++.++++.+.++ .+.+++.++++++++.|++. +..
T Consensus 237 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~ 312 (411)
T 3nnk_A 237 RDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM----GLE 312 (411)
T ss_dssp CCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCC
T ss_pred ccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----CCE
Confidence 001122355777888887888766543 34566666666776666653 322
Q ss_pred eEE---eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC----CCccccc---cCCCHHHHHHH
Q 017633 289 ICG---GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHT 357 (368)
Q Consensus 289 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~----~~~~~~~---~~~~~~~i~~~ 357 (368)
... ...+.++++.+. +..+..++.+.|+++ ||.++++. ...+|++ ..+++++++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~ 379 (411)
T 3nnk_A 313 TFGDLKHKMNNVLGVVIP-------------QGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTT 379 (411)
T ss_dssp BCSCGGGBCSSEEEEECC-------------TTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred eCCCcccccccEEEEECC-------------CCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHH
Confidence 111 122455566542 122357889999887 99998763 2234544 34589999999
Q ss_pred HHHHHHHHhh
Q 017633 358 ITAAEKVLRQ 367 (368)
Q Consensus 358 ~~~l~~~l~~ 367 (368)
+++|++++++
T Consensus 380 ~~~l~~~l~~ 389 (411)
T 3nnk_A 380 LSALEAVLNY 389 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=215.83 Aligned_cols=334 Identities=13% Similarity=0.061 Sum_probs=197.9
Q ss_pred CcHHHHHHHHHHHHcC---C-CCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKKG---T-SFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---~-~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.++++++++.+.+... . ..+.+.....++++.+++++ + +.+++++|+||++++..++..+. ..+++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-RNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-CSTTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-CCCCCEE
Confidence 5666788777777663 1 12233344556666666654 2 57899999999999999998762 1367889
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCc
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~ 155 (368)
++..++|+..... +...|..+....+....++ ..|+++|++++++. ..+++++++...+|++|.
T Consensus 186 lv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 186 LVPIPQYPLYSAS-IALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp EEEESCCTHHHHH-HHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred EEeCCCcHhHHHH-HHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 9999888765443 3334443322222111111 01899999999851 125666665555555666
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc--Ccccc----ccCC---C---cchhhhhhhc-c-CCccceeee
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQE----YFGV---T---PDLTTLGKII-G-GGLPVGAYG 220 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~~~----~~~~---~---~di~s~sK~~-~-~G~~iG~v~ 220 (368)
+++ .+.+++|+++|++||+++|+||+|.++ +.+. ...+. .++. . .-+.||||++ + +|+|+||++
T Consensus 253 ~~s-~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 331 (500)
T 3tcm_A 253 VLA-EENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFE 331 (500)
T ss_dssp CCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEE
T ss_pred cCC-HHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEE
Confidence 555 444999999999999999999999876 4321 22211 1211 1 1234899999 5 799999998
Q ss_pred e---hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHH-----------Hcc-CCHHHHHHHHHHHHHHHHHHHHHhc
Q 017633 221 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 221 ~---~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~-----------~~~-~~~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
+ ++++++.+... ...+++.+.+++.++..+++. ... +.+.++++++++.+++.|++ .
T Consensus 332 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~ 403 (500)
T 3tcm_A 332 ITGFSAPVREQIYKI----ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK----L 403 (500)
T ss_dssp EESCCTTHHHHHHHH----HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----S
T ss_pred EeCCCHHHHHHHHHH----HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 7 88888877631 123456788888877766641 110 22334444555555554443 3
Q ss_pred -CCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH-HHHHHcCeeecCCCCC-------ccccccCCCHHHHHH
Q 017633 286 -GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQFE-------AGFTSLAHSSDDIQH 356 (368)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~~~-------~~~~~~~~~~~~i~~ 356 (368)
++....+..+.+.|..+..+. ......+.........++ +.|.++||.+.|+..+ .+|+++..+++++++
T Consensus 404 ~g~~~~~~~g~~~~~~~~~lp~-~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~ 482 (500)
T 3tcm_A 404 EGITCNEAEGAMYVFPQICLPQ-KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPA 482 (500)
T ss_dssp TTEECCCCCBTTEECCEECCCH-HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHH
T ss_pred CCcEEecCCeEEEEeeeecCch-hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHH
Confidence 222222233444454332100 000000000000123333 5555679999987432 357777789999999
Q ss_pred HHHHHHHHHhh
Q 017633 357 TITAAEKVLRQ 367 (368)
Q Consensus 357 ~~~~l~~~l~~ 367 (368)
++++|++++++
T Consensus 483 ~i~~l~~~~~~ 493 (500)
T 3tcm_A 483 VISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=215.12 Aligned_cols=318 Identities=13% Similarity=0.060 Sum_probs=192.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC-C-C-----CCeEE--EeCChHHHHHHHHHHHHHh-cCCceEE
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV-P-S-----IEMVR--FVNSGTEACMGVLRLARAF-TGRERII 79 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~-----~~~v~--~~~~gt~a~~~al~~~~~~-~~~~~vi 79 (368)
++|.+.+++.++.......+.+.....++++.+++++ + . .+++. .+.+|+++++.+..++..+ .++|.|+
T Consensus 56 ~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vl 135 (409)
T 4eu1_A 56 DQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIY 135 (409)
T ss_dssp SCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEE
T ss_pred CCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEE
Confidence 4566888887763322223334555678888888875 3 2 46674 4889999999886655433 4568999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|++.... +...|..+...+.....+. . .|++++++.+++++++++++++...+|++|.+.+
T Consensus 136 v~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~- 201 (409)
T 4eu1_A 136 GPDVGYPNHESI-FAKAGMELTPYSYYDPATK---------G---LNLAGMLECLDKAPEGSVILVHACAHNPTGVDPT- 201 (409)
T ss_dssp EESSCCTHHHHH-HHHTTCEEEEECCEETTTT---------E---ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCC-
T ss_pred EeCCCcHhHHHH-HHHcCCeEEEEEeecCcCC---------c---CcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCC-
Confidence 999888776433 3333433322111000110 0 0899999999865445666665444555665555
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhch-hccc---Cccccc-cCCCcc---hhhhhhhcc-CCccceee---eehHH---
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPD---LTTLGKIIG-GGLPVGAY---GGRRD--- 224 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~---~~~~~~-~~~~~d---i~s~sK~~~-~G~~iG~v---~~~~~--- 224 (368)
.+.+++|+++|++||+++|+||+|.++ ..+. ...... .+..++ +.||||.++ +|+|+||+ +.+++
T Consensus 202 ~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~ 281 (409)
T 4eu1_A 202 HDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAK 281 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHH
Confidence 445999999999999999999999888 4331 111111 133333 358999999 89999995 56676
Q ss_pred -HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeecc
Q 017633 225 -IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--------EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 295 (368)
Q Consensus 225 -~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 295 (368)
+++.+. ......+++++.+++.++.++++... -+.++++++++++++++.|++......+....+..+
T Consensus 282 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 358 (409)
T 4eu1_A 282 RLVSQLA---LLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVG 358 (409)
T ss_dssp HHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCS
T ss_pred HHHHHHH---HHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCce
Confidence 555554 22234555677888888887776210 022344555555555555554310000211122333
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHH
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+.|..+ + .+++..|+ ++||.+.+++ .+++ ...+++++++++++|++++
T Consensus 359 ~~~~~~~--------------~----~~~~~~ll~~~gv~v~p~~--Ri~~-~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 359 MMAYTGL--------------T----REQVELLRSEYHIYMTLNG--RAAV-SGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp SEEECCC--------------C----HHHHHHHHHHHCEECCTTC--EEEG-GGCCTTTHHHHHHHHHHHH
T ss_pred EEEEeCC--------------C----HHHHHHHHHcCCEEEcCCC--EEEE-EecCHhhHHHHHHHHHHHh
Confidence 4444322 1 34456665 5699999974 2222 2357788999999999876
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=204.70 Aligned_cols=312 Identities=14% Similarity=0.086 Sum_probs=206.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--ChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
.+|++++++.+++.. +.++ .+...+++++++++++ + .+++++++||++|+..+++.+. + ++|++.+++
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~~ 83 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVNG 83 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEECS
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcCC
Confidence 567888888776643 2222 3457899999999987 3 5789999999999999997652 3 789998888
Q ss_pred CCCCc-hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 85 YHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
|++.. .......|..+....... .+. .|++++++.++++ +++++++++.++++|.+.+ +
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~ 143 (353)
T 2yrr_A 84 AFSQRVAEMAALHGLDPEVLDFPP-GEP-------------VDPEAVARALKRR--RYRMVALVHGETSTGVLNP----A 143 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCT-TSC-------------CCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----H
T ss_pred CchHHHHHHHHHcCCceEEEeCCC-CCC-------------CCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----H
Confidence 88751 122233344332222211 111 1899999999853 5677777777788888888 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc--------
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-------- 235 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~-------- 235 (368)
++|.++|++||+++|+||+|. + .........++.+.-+.+++|+++++.++||+++++++++.+......
T Consensus 144 ~~i~~l~~~~~~~li~D~a~~-~-~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~ 221 (353)
T 2yrr_A 144 EAIGALAKEAGALFFLDAVTT-L-GMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVA 221 (353)
T ss_dssp HHHHHHHHHHTCEEEEECTTT-T-TTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHH
T ss_pred HHHHHHHHHcCCeEEEEcCcc-c-ccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHh
Confidence 999999999999999999994 3 111122333333333456789887655689999999888777520000
Q ss_pred ----cccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ccceEEEEeecCC
Q 017633 236 ----YQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGP 306 (368)
Q Consensus 236 ----~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 306 (368)
.....++.+..++.++.++++.+.++ .+.++++++++++++.|++. +....... .+.++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~--- 294 (353)
T 2yrr_A 222 EHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR----GFRPYPKASPLPTVLVVRPP--- 294 (353)
T ss_dssp HHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSSBCTTEEEEECC---
T ss_pred hhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CCccccCccCCCeEEEEECC---
Confidence 01123356777878777888766443 34556666666666666653 32211111 3445566642
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCC----CCccccc--cCCCHHHHH-HHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQ-HTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~--~~~~~~~i~-~~~~~l~~~l~~ 367 (368)
...+..++.+.|.++||.+.++. ...+|++ ...+++|++ +++++|++++++
T Consensus 295 ----------~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 295 ----------EGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ----------TTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ----------CCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 11224789999999999998764 2345554 346888898 999999998865
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=203.61 Aligned_cols=311 Identities=18% Similarity=0.084 Sum_probs=201.8
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
.+|++++++.+++.. .++ ...+...+++++++++++ +.+++++++||++|+..+++.+ ..++++|++..++|++
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~ 87 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 87 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchh
Confidence 568898888776542 121 122456899999999987 5679999999999999999876 3467899999988887
Q ss_pred Cch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 88 HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
... ......|..+....... .+.. |++++++ ++++++++++.++++|.+.+ +++|
T Consensus 88 ~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i 143 (352)
T 1iug_A 88 ERFYEIALEAGLVVERLDYPY-GDTP-------------RPEDVAK------EGYAGLLLVHSETSTGALAD----LPAL 143 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCT-TCCC-------------CTTTSCC------SSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHHcCCceEEEeCCC-CCCC-------------CHHHHhc------cCCcEEEEEEecCCcceecC----HHHH
Confidence 541 11122333332222211 1111 5555554 25677777777788888888 9999
Q ss_pred HHHHHHh--CCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCC----------CC
Q 017633 167 RRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA----------GP 234 (368)
Q Consensus 167 ~~l~~~~--~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~----------~~ 234 (368)
.++|++| |+++|+||+|+.-. .......++.+.-+.++||+++++.++|++++++++++.+... ..
T Consensus 144 ~~l~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA 221 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCccccC--cceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh
Confidence 9999999 99999999996211 1122223333222346789887666789999988876542210 00
Q ss_pred c-cccccCCCCHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCccc
Q 017633 235 M-YQAGTLSGNPLAMTAGIHTLKRLKEP--GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 235 ~-~~~~t~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 310 (368)
. .....++.+..++.++.++++.+.+. .+.++++++++++.+.|++. +.....+ ..+.++++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~------- 290 (352)
T 1iug_A 222 QKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLP------- 290 (352)
T ss_dssp HTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECC-------
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcC-------
Confidence 0 01123466788888888888876543 34455566666666666553 3322111 14567777652
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCC----CCcccccc--CCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~~--~~~~~~i~~~~~~l~~~l~~ 367 (368)
+..+..++.+.|.++||.+.++. ...+|+++ ..+++++++++++|++++++
T Consensus 291 ------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 291 ------EGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ------TTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 11224789999999999999874 23455543 35899999999999998864
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=204.58 Aligned_cols=315 Identities=11% Similarity=0.060 Sum_probs=204.3
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC-CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
.+|++++++.+++.. .+. .+.+...+++++++++++ +.+ ++++++||++|+..+++.+ ..+++.|++..++|+
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~ 105 (393)
T 2huf_A 30 APQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL--LEDGDVILIGHTGHW 105 (393)
T ss_dssp CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 567888888765543 121 234568899999999987 444 8999999999999999876 356789999999888
Q ss_pred CCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+.... .....|..+...+... .+ ..|++++++.+++. +++++++++.++++|.+.+ +++
T Consensus 106 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 165 (393)
T 2huf_A 106 GDRSADMATRYGADVRVVKSKV-GQ-------------SLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQG----LEG 165 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred hHHHHHHHHHcCCeeEEEeCCC-CC-------------CCCHHHHHHHHhcc--CCcEEEEEccCCCccccCC----HHH
Confidence 74211 1122333332221111 11 11899999999842 4677777777778888888 899
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC----Cccc----
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMYQ---- 237 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~----~~~~---- 237 (368)
|.++|++||+++|+||+|.... .......++.+.-+.++||+++|+.++|++++++++++.+...+ ++..
T Consensus 166 i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 2huf_A 166 VGALCHQHNCLLIVDTVASLGG--APMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSL 243 (393)
T ss_dssp HHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHH
T ss_pred HHHHHHHcCCEEEEEcccccCC--CCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHH
Confidence 9999999999999999985211 11222223332223467799875455699999998888776431 1110
Q ss_pred -----------ccc-CCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccceEE
Q 017633 238 -----------AGT-LSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFG 299 (368)
Q Consensus 238 -----------~~t-~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~ 299 (368)
..+ .+.+..+++++.++++.+.++ ...++++++++++++.|.+. +.....+ ..+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~ 319 (393)
T 2huf_A 244 VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA----GFELYADPKDRLSTVTT 319 (393)
T ss_dssp HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCGGGBCTTEEE
T ss_pred HHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc----CCeeccCccccCCcEEE
Confidence 111 245666777777788766432 24556666667776666653 3221111 1233666
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCC----Ccccccc---CCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSL---AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~----~~~~~~~---~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+. ...+..++.+.|+++ ||.+.++.. ..+|+++ .++++++++++++|++++++
T Consensus 320 ~~~~-------------~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 320 IKVP-------------QGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp EECC-------------TTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEcC-------------CCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 6542 112246789999875 999998742 3456554 35789999999999998864
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=203.48 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=202.1
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC-----------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH-hc-
Q 017633 8 FPSYLQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-FT- 73 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~-~~- 73 (368)
++.+|++++++.+++.....++. ..+...+++++++++++ +.+++++++||++|++.+++.+.. +.
T Consensus 32 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~ 111 (423)
T 3lvm_A 32 TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQK 111 (423)
T ss_dssp CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhcc
Confidence 46788999999988772111111 12456889999999987 677999999999999999976642 22
Q ss_pred CCceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++.|++..+.|++........ .|..+...+... .+.. |+++++++++ +++++++++++++
T Consensus 112 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~i~---~~~~~v~~~~~~n 174 (423)
T 3lvm_A 112 KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGII-------------DLKELEAAMR---DDTILVSIMHVNN 174 (423)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCC-------------CHHHHHHHCC---TTEEEEECCSBCT
T ss_pred CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CCcc-------------CHHHHHHhcC---CCcEEEEEeCCCC
Confidence 4789999988888765444322 233322221111 1111 8999999997 4788999998888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccCCCcchh--hhhhhccCCccceeeeehHHHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~ 228 (368)
++|.+.+ +++|+++|++||++||+||+|+. +.. ..... ..+|++ ++||.++ +.++|+++++++..+.
T Consensus 175 ptG~~~~----l~~i~~l~~~~~~~li~Dea~~~---~~~~~~~~~--~~~di~~~s~sK~~g-~~g~G~~~~~~~~~~~ 244 (423)
T 3lvm_A 175 EIGVVQD----IAAIGEMCRARGIIYHVDATQSV---GKLPIDLSQ--LKVDLMSFSGHKIYG-PKGIGALYVRRKPRVR 244 (423)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTTT---TTSCCCTTT--SCCSEEEEESTTTTS-CSSCEEEEECBTTBCC
T ss_pred CCccccC----HHHHHHHHHHcCCEEEEEhhhhc---CCCCcChhh--cCCCEEEechHHhcC-CCCeEEEEEeccccCC
Confidence 8998888 99999999999999999999963 211 22222 335554 5679665 3459999988776555
Q ss_pred hcCCCC----ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec----cceEEE
Q 017633 229 VAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI----SGMFGF 300 (368)
Q Consensus 229 ~~~~~~----~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~ 300 (368)
+..... .....+.+.+..+++++.++++.+.+. .+.+.++.+.+++.+.+.+.+.+........ +.++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 322 (423)
T 3lvm_A 245 IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNV 322 (423)
T ss_dssp CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEE
T ss_pred CCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEE
Confidence 542110 001233456777888777888766432 3444444444444454444444222122211 244455
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------Ccccc--ccCCCHHHHH
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT--SLAHSSDDIQ 355 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~~--~~~~~~~~i~ 355 (368)
.+. ..+..++.+.|.+ |.+.++.. ..+|+ ...+++++++
T Consensus 323 ~~~--------------~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~ 386 (423)
T 3lvm_A 323 SFN--------------YVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 386 (423)
T ss_dssp EET--------------TSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred EeC--------------CCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH
Confidence 441 1124667777766 77777531 22343 4456899999
Q ss_pred HHHHHHHHHHhh
Q 017633 356 HTITAAEKVLRQ 367 (368)
Q Consensus 356 ~~~~~l~~~l~~ 367 (368)
+++++|++++++
T Consensus 387 ~~~~~l~~~~~~ 398 (423)
T 3lvm_A 387 YTIELVRKSIGR 398 (423)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=206.73 Aligned_cols=314 Identities=12% Similarity=0.008 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCCeEEE--eCChHHHHHHHHHHHHHh-cCCceEEEE
Q 017633 13 QVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-------SIEMVRF--VNSGTEACMGVLRLARAF-TGRERIIKF 81 (368)
Q Consensus 13 ~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~v~~--~~~gt~a~~~al~~~~~~-~~~~~vi~~ 81 (368)
.+++++.+.......+ +.+.....++++.+++++. +++++++ |+||++|+..+++.+..+ .+++.|++.
T Consensus 50 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~ 129 (401)
T 7aat_A 50 CVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLP 129 (401)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEc
Confidence 5788887766532222 2233445677777777653 1788877 999999999998765433 457899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++|..+... +...|..+...++ ....+.. |++++++.+.+..++++++++.+.+|++|.+.+.
T Consensus 130 ~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~-------------d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~- 194 (401)
T 7aat_A 130 KPSWGNHTPI-FRDAGLQLQAYRYYDPKTCSL-------------DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQ- 194 (401)
T ss_dssp ESCCTTHHHH-HHHTTCEEEEEECEETTTTEE-------------CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCH-
T ss_pred CCCchhHHHH-HHHcCCeeEeeeeeccccCcc-------------CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCH-
Confidence 9888876433 3333433322111 1011111 7888888887644567777777776767765554
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hccc---Ccccc----ccCCCcchhhhhhhcc-CCccceeeee---hHH----
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE----YFGVTPDLTTLGKIIG-GGLPVGAYGG---RRD---- 224 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~---~~~~~----~~~~~~di~s~sK~~~-~G~~iG~v~~---~~~---- 224 (368)
+.+++|+++|++||+++|+||+|.++ ..+. ..... ......-+.|+||.++ +|+|+||+++ +++
T Consensus 195 ~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~ 274 (401)
T 7aat_A 195 EQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR 274 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHH
Confidence 44999999999999999999999887 4321 11111 1122223468999999 8999999865 555
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHH------cc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 296 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~------~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 296 (368)
+...+. ......+.+.+..++.++...++.- .+ +.+.++++++++++.+.|++.....+.....+..+.
T Consensus 275 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~ 351 (401)
T 7aat_A 275 VESQLK---ILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGM 351 (401)
T ss_dssp HHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSS
T ss_pred HHHHHH---HHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcce
Confidence 333333 1222234455556665555444210 00 223445555555555555543100012212223344
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHHH
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~l 365 (368)
+.|..+ + .+.+...+.++||.+.++ .|+++ ..+++++++++++|++++
T Consensus 352 ~~~~~~--------------~---~~~~~~ll~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 352 FCFTGL--------------K---PEQVERLTKEFSIYMTKD----GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EEECCC--------------C---HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEecCC--------------C---HHHHHHHHHhCCEeccCC----CeEEeccCChhhHHHHHHHHHHHh
Confidence 444332 1 133433445679999876 34433 246667999999999876
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=199.37 Aligned_cols=317 Identities=14% Similarity=0.041 Sum_probs=195.2
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
+..++.+|++++++.+++..........+...++++++++.++ +.+++++++||++|++.+++.++ .+++.|++..+
T Consensus 21 ~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~ 98 (359)
T 1svv_A 21 DYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--RPWEAVIATQL 98 (359)
T ss_dssp SCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--CTTEEEEEETT
T ss_pred CCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh--CCCCEEEEccc
Confidence 4567789999999999886532223456788999999999887 67899999999999999998773 46789999999
Q ss_pred CCCCCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC----CCCeEEEEEcccCCCCCcccC
Q 017633 84 CYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~----~~~~~~~~~~~~~~~~g~~~~ 158 (368)
+|++.... .+...|..+...+.. .+.. |++++++.++++ ..+++++++++. +++|.+.+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~v~~~--~~~~-------------d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~ 162 (359)
T 1svv_A 99 GHISTHETGAIEATGHKVVTAPCP--DGKL-------------RVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYT 162 (359)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCT--TSCC-------------CHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCC
T ss_pred chHHHHHHHHHhcCCCeeEEEeCC--CCee-------------cHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecC
Confidence 99876543 233333333222111 1111 799999999853 113788877776 45676555
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhchhcccC-ccccccC--CCcchhh--hhhhccCCccceeeeehHHHHHHhcCCC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFG--VTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~-~~~~~~~--~~~di~s--~sK~~~~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
.+++++|+++|++||+++|+||+|.++..+.. ......+ ..+|+++ .+|. ++..++|++++++++++.+....
T Consensus 163 -~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~~ 240 (359)
T 1svv_A 163 -KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDALKPNARHLI 240 (359)
T ss_dssp -HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHH
T ss_pred -HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcccHHHHHHHHH
Confidence 56799999999999999999999966511211 1111111 1234443 4564 33346678887887765554200
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCccc
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (368)
.....+++.+.....+.. ..+.++ ++.+++.++++++++.| +. .+.....+..++++++.+.
T Consensus 241 -~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~l~~~L-~~---~~~~~~~~~~~~~~~~~~~------- 305 (359)
T 1svv_A 241 -KQRGALMAKGWLLGIQFE---VLMKDNLFFELGAHSNKMAAILKAGL-EA---CGIRLAWPSASNQLFPILE------- 305 (359)
T ss_dssp -HHTTCCCTTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHH-HH---TTCCBSSCCSSSEECBEEE-------
T ss_pred -hcCCcccccchhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHh-cc---CCeEEccCCccceEEEEcC-------
Confidence 001122222222222222 223332 24455566666666666 32 2332222233445554431
Q ss_pred chhcccccHHHHHHHHHHHHc-CeeecCC---CCCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 311 EDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++.+.|+++ ||.+.+. +...+|+ +...+++++++++++|++++++
T Consensus 306 -----------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 306 -----------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp -----------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred -----------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 4788999998 9998431 2234555 5667999999999999998765
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=195.95 Aligned_cols=320 Identities=16% Similarity=0.080 Sum_probs=200.7
Q ss_pred cCCCcHHHHHHHHHHHHcCCCC---CCC-----ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH-h-cCC
Q 017633 7 LFPSYLQVLAALGETMKKGTSF---GAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-TGR 75 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~-~-~~~ 75 (368)
.++.+|++++++.+++.+.... .++ .+...+++++++++++ +.+++++++||++|+..+++.+.. + .++
T Consensus 9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~g 88 (382)
T 4eb5_A 9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKG 88 (382)
T ss_dssp CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCC
Confidence 3568899999999988752111 011 2467889999999987 567999999999999999987741 1 457
Q ss_pred ceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+.|++.+++|++........ .|..+...+... .+. .|++++++.++ ++++++++++.++++
T Consensus 89 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~~~~v~~~~~~npt 151 (382)
T 4eb5_A 89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGE-------------VDVSFIDQKLR---DDTILVSVQHANNEI 151 (382)
T ss_dssp CEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSC-------------BCHHHHHHHCC---TTEEEEECCSBCTTT
T ss_pred CEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCc-------------cCHHHHHHHhc---CCCeEEEEeccCCCc
Confidence 88999988887654433322 233222211111 111 18999999987 368888888888888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHH-HHHhcCC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI-MEMVAPA 232 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~-~~~~~~~ 232 (368)
|.+.+ +++|.++|++||++ |+||+|. + .........++.+.-+.|+||.++. .++|+++++++. +..+...
T Consensus 152 G~~~~----l~~i~~l~~~~~~~-i~D~a~~-~-g~~~~~~~~~~~di~~~s~sK~~g~-~g~G~~~~~~~~~l~~~~~~ 223 (382)
T 4eb5_A 152 GTIQP----VEEISEVLAGKAAL-HIDATAS-V-GQIEVDVEKIGADMLTISSNDIYGP-KGVGALWIRKEAKLQPVILG 223 (382)
T ss_dssp CBBCC----HHHHHHHHTTSSEE-EEECTTT-B-TTBCCCHHHHTCSEEEEETGGGTCC-SSCEEEEEETTCCCCCSSCS
T ss_pred cccCC----HHHHHHHHHHCCCE-EEEcchh-c-CCcccCccccCCCEEEeehHHhcCC-CceEEEEEccccccCceecC
Confidence 98888 99999999999999 9999996 2 1111122223332234578898652 248998887653 1111100
Q ss_pred -CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ccceEEEEeecCCC
Q 017633 233 -GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISGMFGFFFTEGPV 307 (368)
Q Consensus 233 -~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 307 (368)
+........+.+...+.++.++++.+.+ ..+.+.++.+..++.+.+.+.+.+....... .+.++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---- 297 (382)
T 4eb5_A 224 GGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS---- 297 (382)
T ss_dssp SCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET----
T ss_pred CCccccccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC----
Confidence 0001122335566777777777776543 1233333334444444444333321111111 1445666542
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------CccccccC--CCHHHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFTSLA--HSSDDIQHTITAAE 362 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~~~~~--~~~~~i~~~~~~l~ 362 (368)
..+..++.+.|.++||.+.++.. ..+|+++. ++++++++++++|+
T Consensus 298 ----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 298 ----------YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP 367 (382)
T ss_dssp ----------TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ----------CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 11246788999999999988641 23555544 68999999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
+++++
T Consensus 368 ~~~~~ 372 (382)
T 4eb5_A 368 GVIER 372 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=207.81 Aligned_cols=330 Identities=10% Similarity=-0.001 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHcCC----CCCCCC----hhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCC---
Q 017633 11 YLQVLAALGETMKKGT----SFGAPC----LLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR--- 75 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~----~~~~~~----~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~--- 75 (368)
+.++.+++.+.+.... ..+.+. +..+++++.+.+..+ .++++++|+|+++++..++.++. .++
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~--~~gd~~ 180 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV--SGGGKS 180 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC--CCCGGG
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc--CCCCCC
Confidence 4455676766666521 112222 344445555544432 47899999999999999998663 233
Q ss_pred -ceEEEEcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCC--CeEEEEEcccCC
Q 017633 76 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVG 151 (368)
Q Consensus 76 -~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~--~~~~~~~~~~~~ 151 (368)
+.|++..+.|.... ..+...|..+........ .+.. |+++|++++++... +++++++...+|
T Consensus 181 ~d~Vlv~~p~y~~~~-~~~~~~g~~~v~~~~~~~~~~~~-------------d~~~le~~l~~~~~~~~~k~i~l~np~N 246 (498)
T 3ihj_A 181 RTGVMIPIPQYPLYS-AVISELDAIQVNYYLDEENCWAL-------------NVNELRRAVQEAKDHCDPKVLCIINPGN 246 (498)
T ss_dssp SEEEEEEESCCTHHH-HHHHHTTCEEEEEECBGGGTTBC-------------CHHHHHHHHHHHTTTSEEEEEEEESSCT
T ss_pred CCEEEEeCCCchhHH-HHHHHcCCEEEEeeccccccCCC-------------CHHHHHHHHHhhhccCCCeEEEEECCCC
Confidence 48888888887653 333443433322111111 1111 89999999985321 467666665555
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hccc--Ccccccc----C------C-Ccchhhhhhhc-c-CCcc
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYF----G------V-TPDLTTLGKII-G-GGLP 215 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~~~~~----~------~-~~di~s~sK~~-~-~G~~ 215 (368)
++|.+++.+ .+++|+++|++||+++|+||+|..+ +.+. ...+... + . ..-+.||||.+ | +|+|
T Consensus 247 PTG~v~s~~-~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R 325 (498)
T 3ihj_A 247 PTGQVQSRK-CIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYR 325 (498)
T ss_dssp TTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSC
T ss_pred CCCCcCCHH-HHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccc
Confidence 566655544 4999999999999999999999877 4322 2222111 0 0 12245899999 5 7999
Q ss_pred ceeee---ehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHH-----------Hcc-CCHHHHHHHHHHHHHHHHHH
Q 017633 216 VGAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGIID 280 (368)
Q Consensus 216 iG~v~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~-----------~~~-~~~~~~~~~~~~~l~~~l~~ 280 (368)
+||++ .++++++.+... .....+.+.+++.++..+++. +.. ..+.++++++++++.+.|++
T Consensus 326 ~G~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 401 (498)
T 3ihj_A 326 GGYMEVINLHPEIKGQLVKL----LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401 (498)
T ss_dssp CEEEEEESCCHHHHHHHHHH----HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecCCHHHHHHHHHH----HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99997 588888877631 223446677787776555431 100 11223344444444444443
Q ss_pred HHHhc-CCceEEeeccceEEEEeecCCCcccchhcccccHHHHH--HHHHHHHcCeeecCCCC-------CccccccCCC
Q 017633 281 AGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR--FYRGMLEEGVYFAPSQF-------EAGFTSLAHS 350 (368)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~Gi~~~~~~~-------~~~~~~~~~~ 350 (368)
. ++....+..+.+.|+.+..+. ........ .+....+ ..+.|.++||.+.++.. .++|+++..+
T Consensus 402 ----~~g~~~~~p~gg~~~~~~l~~p~-~~~~~~~~-~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~ 475 (498)
T 3ihj_A 402 ----VPGIHCNPLQGAMYAFPRIFIPA-KAVEAAQA-HQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPP 475 (498)
T ss_dssp ----STTEECCCCCBSSEECCEECCCH-HHHHHHHH-TTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSC
T ss_pred ----CCCcEecCCCeEEEEEEeccCch-hhhHHHHh-cCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCC
Confidence 3 222222233444454442100 00000000 0001123 34455678999998632 2456777789
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017633 351 SDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 351 ~~~i~~~~~~l~~~l~~ 367 (368)
++++++++++|++++.+
T Consensus 476 ~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 476 VEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=195.82 Aligned_cols=315 Identities=14% Similarity=0.051 Sum_probs=189.3
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCC
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 85 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~ 85 (368)
+.++.+|++++++.+++......+.+.+...+++++++++++...++++++||++|+..+++.++ .+++.|++.++.|
T Consensus 16 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~--~~gd~vi~~~~~~ 93 (356)
T 1v72_A 16 NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT--PPWGNIYCHPASH 93 (356)
T ss_dssp GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC--CTTEEEEECTTSH
T ss_pred CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc--CCCCEEEEcCccc
Confidence 44678999999998876431122234677899999999998743458999999999999998762 3567777766554
Q ss_pred CCCchh-hhhhc--CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHH-HHHcC----CCCeEEEEEcccCCCCCccc
Q 017633 86 HGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 86 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~~~~~----~~~~~~~~~~~~~~~~g~~~ 157 (368)
...... .+... |..+... +...+. -|++++++ ++++. .++++++++++.+ ++|.+
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~v--~~~~~~-------------~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~- 156 (356)
T 1v72_A 94 INNDECGAPEFFSNGAKLMTV--DGPAAK-------------LDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSI- 156 (356)
T ss_dssp HHHSSTTHHHHHTTSCEEEEC--CCGGGC-------------CCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCC-
T ss_pred hhhhhchHHHHHhCCcEEEEe--cCCCCe-------------EcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCcc-
Confidence 432222 12322 4332221 110010 18999999 88741 1267888888854 57754
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-h--cccCccccccC--CCcch--hhhhhhccCCccce--eeeehHHHHHH
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDL--TTLGKIIGGGLPVG--AYGGRRDIMEM 228 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~--~g~~~~~~~~~--~~~di--~s~sK~~~~G~~iG--~v~~~~~~~~~ 228 (368)
.+.+++++|+++|++||++||+||+|..+ . .+.. ....+ ...|+ .++||+ + .|+| ++++++++++.
T Consensus 157 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~-g--~~~G~g~~~~~~~~~~~ 231 (356)
T 1v72_A 157 YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN-G--VLAAEAIVLFNTSLATE 231 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG-T--CSSCEEEEESSGGGHHH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC-C--CcCccEEEEECHHHHhh
Confidence 45666999999999999999999999653 1 2211 11111 12233 467898 3 3666 77778887766
Q ss_pred hcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCC
Q 017633 229 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 229 ~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
+.... ...++... ....++.++++.+.+ +....+.++.+..++.+.+.+.+. ++....+..++++|+.+.
T Consensus 232 ~~~~~--~~~~~~~~--~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~---- 302 (356)
T 1v72_A 232 MSYRR--KRAGHLSS--KMRFLSAQIDAYLTD-DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD---- 302 (356)
T ss_dssp HHHHH--HHTTCCCS--STHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----
T ss_pred HHHHh--hccCchhh--hHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC----
Confidence 54210 01121111 122233334455543 322223333334444444444332 222222344556666541
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCC--CCcccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++.+.|.++||.+.++. ...+|+ +..++++++++++++|++++++
T Consensus 303 --------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 303 --------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp --------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred --------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 378889999999999764 234454 4567999999999999988754
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=195.58 Aligned_cols=317 Identities=15% Similarity=0.083 Sum_probs=201.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC--------CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH--hcCC
Q 017633 7 LFPSYLQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTGR 75 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~--~~~~ 75 (368)
.+..+|++++++.+++.+...+. ...+...+++++++++++ +.+++++++||++|+..+++.+.. ..++
T Consensus 9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~g 88 (382)
T 4hvk_A 9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKG 88 (382)
T ss_dssp CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGC
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCC
Confidence 34578899999999887632211 113456689999999998 678899999999999999976641 1467
Q ss_pred ceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+.|++..+.|++........ .|..+....... .+.. |+++++++++ ++++++++++.++++
T Consensus 89 d~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~i~---~~~~~v~~~~~~npt 151 (382)
T 4hvk_A 89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEV-------------DVSFIDQKLR---DDTILVSVQHANNEI 151 (382)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TSCB-------------CHHHHHHHCC---TTEEEEECCSBCTTT
T ss_pred CEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CCCc-------------CHHHHHHHhc---cCceEEEEECCCCCc
Confidence 88999888887655443332 233322211111 1111 8999999997 478899998888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~ 232 (368)
|.+.+ +++|.++|++||+ +|+||+|+. +. ......++.+..+.++||.++ +.++|+++++++. .+...
T Consensus 152 G~~~~----~~~i~~l~~~~~~-li~D~a~~~---~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~--~~~~~ 220 (382)
T 4hvk_A 152 GTIQP----VEEISEVLAGKAA-LHIDATASV---GQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA--KLQPV 220 (382)
T ss_dssp CBBCC----HHHHHHHHSSSSE-EEEECTTTB---TTBCCCHHHHTCSEEEEESGGGTS-CTTCEEEEEETTC--CCCCS
T ss_pred eeeCC----HHHHHHHHHHcCE-EEEEhHHhc---CCCCCCchhcCCCEEEEeHHHhcC-CCceEEEEEcCcc--CcCcc
Confidence 98888 9999999999999 999999962 21 122333444334557889754 3358888776543 22210
Q ss_pred ----CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ccceEEEEeec
Q 017633 233 ----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISGMFGFFFTE 304 (368)
Q Consensus 233 ----~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 304 (368)
.........+.+..++.++.++++.+.+ ..+...++.+..++.+.+.+...+....... ...++.+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 297 (382)
T 4hvk_A 221 ILGGGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS- 297 (382)
T ss_dssp SCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET-
T ss_pred cccCCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC-
Confidence 0011112345577788777777775532 2334444444444444444433322111111 1234455441
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-----------------------CCccccc--cCCCHHHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS--LAHSSDDIQHTIT 359 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----------------------~~~~~~~--~~~~~~~i~~~~~ 359 (368)
..+..++.+.|.++||.++++. ...+|++ ..++++|++++++
T Consensus 298 -------------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~ 364 (382)
T 4hvk_A 298 -------------YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp -------------TCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 1224678999999999999863 2334543 4468999999999
Q ss_pred HHHHHHhh
Q 017633 360 AAEKVLRQ 367 (368)
Q Consensus 360 ~l~~~l~~ 367 (368)
+|++++++
T Consensus 365 ~l~~~~~~ 372 (382)
T 4hvk_A 365 VLPGVIER 372 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=206.57 Aligned_cols=328 Identities=14% Similarity=0.014 Sum_probs=216.4
Q ss_pred eccCCCcHHHHHHHHHHHHcC-----C-C---CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh-c
Q 017633 5 IILFPSYLQVLAALGETMKKG-----T-S---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-T 73 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~-----~-~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~-~ 73 (368)
+.+|..++.+.+++.+++... . + +....+..++++++++++++ ++++|++++|+++++..+++.+... .
T Consensus 74 ~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~ 153 (465)
T 3e9k_A 74 NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTP 153 (465)
T ss_dssp TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCS
T ss_pred CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccC
Confidence 456767777877777766441 0 1 11223556788999999987 6789999999999999999776322 2
Q ss_pred CCceEEEEcCCCCCCchhhh---hhcCCCccc---cCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEE
Q 017633 74 GRERIIKFEGCYHGHADPFL---VKAGSGVAT---LGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 146 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~ 146 (368)
++++|++..+.|++...... ...|..+.. ...+.. .+.. |+++++++++++.++++++++
T Consensus 154 ~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~-------------d~~~l~~~i~~~~~~~~lv~~ 220 (465)
T 3e9k_A 154 KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL-------------RIEDILEVIEKEGDSIAVILF 220 (465)
T ss_dssp SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSC-------------CHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCcc-------------CHHHHHHHHHhcCCCeEEEEE
Confidence 35569999999987544322 223433210 001111 1111 799999999754347899999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCC-ccceeeeehHH
Q 017633 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRD 224 (368)
Q Consensus 147 ~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~ 224 (368)
+++++++|.+.+ +++|.++|++||+++|+|++|+. |. ......++.+..+.+++|.+++| .++|+++++++
T Consensus 221 ~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~---g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~ 293 (465)
T 3e9k_A 221 SGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAV---GNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK 293 (465)
T ss_dssp ESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT---TTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG
T ss_pred eCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhc---CCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHH
Confidence 998888999988 99999999999999999999962 22 12233444433345778999644 57999999888
Q ss_pred HHHHhcCCCCcccc----------------------ccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHH
Q 017633 225 IMEMVAPAGPMYQA----------------------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 279 (368)
Q Consensus 225 ~~~~~~~~~~~~~~----------------------~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 279 (368)
+.+.+........+ ...+++.++++++.++++.+.+ +.+.++..++.+++.+.|+
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~ 373 (465)
T 3e9k_A 294 HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIK 373 (465)
T ss_dssp GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 76665421111000 0115677888888888887754 3355666666667766666
Q ss_pred HHHHh-------cCCceE----EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcccc---
Q 017633 280 DAGKK-------AGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--- 345 (368)
Q Consensus 280 ~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~--- 345 (368)
+.... .++... ....+.++++.+.. +..++.+.|.++||.+.......+|+
T Consensus 374 ~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~---------------~~~~l~~~L~~~Gi~v~~~~~~~iRis~~ 438 (465)
T 3e9k_A 374 HNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV---------------PNKDVFQELEKRGVVCDKRNPNGIRVAPV 438 (465)
T ss_dssp HHCC---------CEEECSCSSGGGBCSCEEEEECC---------------TTCCHHHHHHTTTEECEEETTTEEEEBCC
T ss_pred hhccccccccCCCCeEEeCCCCHhhcccEEEEEecC---------------CHHHHHHHHHHCCEEEecCCCCEEEEeCc
Confidence 64210 121111 11236677776631 12568899999999998654445554
Q ss_pred ccCCCHHHHHHHHHHHHHHHhh
Q 017633 346 SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 346 ~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.++++|++++++.|++++++
T Consensus 439 ~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 439 PLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999854
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=199.14 Aligned_cols=313 Identities=13% Similarity=0.126 Sum_probs=204.2
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCC-CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
.+|++++++.+.+.. .+. ++.....+++++++++++ +.+ ++++++||++++..+++.+ ..+++.|++..++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 345666666554321 121 122457899999999998 556 8999999999999999876 356789999999998
Q ss_pred CCch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+... ......|..+....... .+. .|++++++.++++ +++++++++.++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DRP-------------FSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TSC-------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CCC-------------CCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 8531 13333344332222211 111 1899999999842 4677777777777888888 899
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhccCCccceeeeehHHHHHHhcCCC----Ccc---
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY--- 236 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~~----~~~--- 236 (368)
|.++|++||+++|+||+|. + .........+ .+|++ +++|.++++.++|++++++++++.+...+ .+.
T Consensus 165 i~~l~~~~~~~li~Dea~~-~-g~~~~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-L-CGVPFYMDKW--EIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 240 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-B-TTBCCCTTTT--TCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred HHHHHHHcCCEEEEEcccc-c-cCCccchhhc--CcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEech
Confidence 9999999999999999996 2 1111222222 34654 56699987778899999888887764311 101
Q ss_pred -------------ccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ccc
Q 017633 237 -------------QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISG 296 (368)
Q Consensus 237 -------------~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~ 296 (368)
.....+.+..++.++.++++.+.++ .+.++++++++++.+.|++. +.....+. .+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 316 (396)
T 2ch1_A 241 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM----GLDIFVKDPRHRLPT 316 (396)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH----TCCBSSCSGGGBCTT
T ss_pred HHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CCeeccCCccccCCc
Confidence 1122356777888888888765332 34566677777777777664 32211111 123
Q ss_pred eEEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC----CCcccccc---CCCHHHHHHHHHHHHHHHhh
Q 017633 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~----~~~~~~~~---~~~~~~i~~~~~~l~~~l~~ 367 (368)
++++.+. ...+..++.+.|+++ ||.+.++. ...+|++. .++++++++++++|++++++
T Consensus 317 ~~~~~~~-------------~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 317 VTGIMIP-------------KGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEEECC-------------TTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcC-------------CCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5566542 122357889999876 99999864 23455544 45899999999999998864
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=196.90 Aligned_cols=323 Identities=13% Similarity=0.110 Sum_probs=200.5
Q ss_pred eccCCCcHHHHHHHHHHHHcC-CCCCCCC--hhHHHHHHHHHhhCCC-----CCeEEEeCChHHHHHHHHHHHHH-hcCC
Q 017633 5 IILFPSYLQVLAALGETMKKG-TSFGAPC--LLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLARA-FTGR 75 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~-~~~~~~~--~~~~~l~~~l~~~~~~-----~~~v~~~~~gt~a~~~al~~~~~-~~~~ 75 (368)
..|+++++.+.+++.+++... ..++.+. ....++++++++.++. .+++++++||++|+..+++.+.. ..++
T Consensus 7 ~~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~g 86 (385)
T 2bkw_A 7 TLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPN 86 (385)
T ss_dssp EECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSC
T ss_pred eeecCCCcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCC
Confidence 455555554444444444432 1233222 2456788888888762 47999999999999999987621 1456
Q ss_pred ceEEEE-cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 76 ERIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
++|+++ ++.||......+...|..+.........+.. |+++++++++. .+++++++++.++++|
T Consensus 87 d~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~l~~--~~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 87 KNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESV-------------PLELITEKLSQ--NSYGAVTVTHVDTSTA 151 (385)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCC-------------CHHHHHHHHHH--SCCSEEEEESEETTTT
T ss_pred CeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCC-------------CHHHHHHHHhc--CCCCEEEEEccCCCcC
Confidence 788887 4455554223333334433222220111111 89999999984 2567888888888889
Q ss_pred cccCCHHHHHHHHHHHHHh--CCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH-HhcC
Q 017633 155 FIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME-MVAP 231 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~--~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~-~~~~ 231 (368)
.+.+ +++|+++|++| |+++|+||+|+... .......++.+.-+.++||+++++.++|++++++++++ .+..
T Consensus 152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~ 225 (385)
T 2bkw_A 152 VLSD----LKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALND 225 (385)
T ss_dssp EECC----HHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCH
T ss_pred eEcC----HHHHHHHHHhhCCCCEEEEECccccCC--ccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhh
Confidence 8888 99999999999 99999999996211 11122223322223467899886556799999887766 5420
Q ss_pred ------CC---------C---cccc---c-cCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHH-HHHHHhc
Q 017633 232 ------AG---------P---MYQA---G-TLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGI-IDAGKKA 285 (368)
Q Consensus 232 ------~~---------~---~~~~---~-t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l-~~~~~~~ 285 (368)
.. . .... . ..+.+..++.++.++++.+.+.+ +.++++++++++++.| ++ .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 301 (385)
T 2bkw_A 226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG----L 301 (385)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT----T
T ss_pred ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh----c
Confidence 00 0 0000 0 13567778888878887764332 3455555556665555 43 3
Q ss_pred CCceEEe-----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-----Cccccc-c-----CC
Q 017633 286 GHAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS-L-----AH 349 (368)
Q Consensus 286 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----~~~~~~-~-----~~ 349 (368)
+.....+ ..+.++++.+. + ..++.+.|.++||.+.++.. ..+|++ + .+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~ 365 (385)
T 2bkw_A 302 QLTSVSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNK 365 (385)
T ss_dssp CCEESSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSST
T ss_pred CceecccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccC
Confidence 3221111 23566676651 1 46789999999999998743 234555 3 36
Q ss_pred CHHHHHHHHHHHHHHHhhC
Q 017633 350 SSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~~~ 368 (368)
+++|+++++++|+++++++
T Consensus 366 ~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 366 NLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp TCTHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=208.56 Aligned_cols=341 Identities=11% Similarity=0.022 Sum_probs=192.2
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhh-----CC------CCCeEEEeCChHHHHHHHHHHHH---H
Q 017633 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISA-----VP------SIEMVRFVNSGTEACMGVLRLAR---A 71 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~------~~~~v~~~~~gt~a~~~al~~~~---~ 71 (368)
..++.+|.+++++.+.+.. ..|. ++....++++.+++. +. +.++|++|+|+++++..++.++. .
T Consensus 113 ~~~~~~~~~~~al~~~~~~-~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l 190 (546)
T 2zy4_A 113 QLGLDPAAFLHEMVDGILG-CNYP-VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL 190 (546)
T ss_dssp TSCCCHHHHHHHHHHHHHT-CSCC-SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCChHHHHHHHHhhhc-CCCC-CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 3466778888888887753 3332 222233344443332 21 24799999999999999987631 1
Q ss_pred hcCCceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 72 FTGRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 72 ~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
..++|.|++.+++|+++........ +..+.........++. .|++++++.+. +++++++++..+
T Consensus 191 ~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~k~v~l~~p~ 255 (546)
T 2zy4_A 191 LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQ------------YPDSELDKLKD---PAIKIFFCVNPS 255 (546)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTB------------CCHHHHGGGGS---TTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCC------------CCHHHHHHhhC---CCCeEEEEECCC
Confidence 2467899999999988654432211 2211111111111110 17888887764 467766666555
Q ss_pred CCCCcccCCHHHHHHHHHHH--HHhCCEEEEehhhhch-hcccCccccc-cCCCcchhhhhhhcc-CCccceeeeehHH-
Q 017633 151 GNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGF-RLAYGGAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRD- 224 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~--~~~~~~li~De~~~~~-~~g~~~~~~~-~~~~~di~s~sK~~~-~G~~iG~v~~~~~- 224 (368)
|++|.+++. +.+++|+++| ++||+++|+||+|.++ ..... .... .+....+.||||.++ +|+|+||++++++
T Consensus 256 NPtG~~~~~-~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s-~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~ 333 (546)
T 2zy4_A 256 NPPSVKMDQ-RSLERVRNIVAEHRPDLMILTDDVYGTFADDFQS-LFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQN 333 (546)
T ss_dssp SSSCBCCCH-HHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCC-HHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSC
T ss_pred CCCCccCCH-HHHHHHHHHHHhccCCcEEEEeCcchhhcccCcC-HHHhCCCCEEEEEeCccccCCCCcceEEEEECCHH
Confidence 556765554 4499999999 7899999999999987 32111 1111 122334679999998 8999999988764
Q ss_pred HHHHhcCC-------------C--------------------CccccccCCCCHHHHHHHH--HHHHHHcc-CCHHHHHH
Q 017633 225 IMEMVAPA-------------G--------------------PMYQAGTLSGNPLAMTAGI--HTLKRLKE-PGTYEYLN 268 (368)
Q Consensus 225 ~~~~~~~~-------------~--------------------~~~~~~t~~~~~~~~~a~~--~~l~~~~~-~~~~~~~~ 268 (368)
+++.+... . ......+.+.+.+.+.++. +....+.+ +.+.++++
T Consensus 334 l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r 413 (546)
T 2zy4_A 334 VFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLK 413 (546)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 66554210 0 0001233456767666532 12233332 33333333
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC----Cc-ccchhcccccHHHHHHHHHHHHcCeeecCCCC---
Q 017633 269 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VY-NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--- 340 (368)
Q Consensus 269 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--- 340 (368)
+..+..++.+.+.+. .++....+..+.++|+++.... .. ...|...+ ......+.+.|.++||.+.||..
T Consensus 414 ~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~-~~~~~~l~~ll~~~gV~v~pG~~F~~ 491 (546)
T 2zy4_A 414 QLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQ-SSTGDMLFRIADETGIVLLPGRGFGS 491 (546)
T ss_dssp HHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHH-CCHHHHHHHHHHHHSCCCEESSCTTC
T ss_pred HHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhcc-CCHHHHHHHHHHHCCEEEeCccccCC
Confidence 333333333333222 2222122344556677753100 00 00000000 01224466777889999999742
Q ss_pred --CccccccCC-CHHHHHHHHHHHHHHHhh
Q 017633 341 --EAGFTSLAH-SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 341 --~~~~~~~~~-~~~~i~~~~~~l~~~l~~ 367 (368)
.++|+++.. +++++++++++|++++.+
T Consensus 492 ~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 492 NRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp SSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 245776665 899999999999998754
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=196.88 Aligned_cols=321 Identities=9% Similarity=0.016 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhC-C-----CCCeEEEeCChHHHHHHHHHHHHHh--cCCceEEEEc
Q 017633 12 LQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAV-P-----SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFE 82 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~-~-----~~~~v~~~~~gt~a~~~al~~~~~~--~~~~~vi~~~ 82 (368)
|.|++|..+.++....+ |.|.....+|++++++++ + +......|.+||.|+..++.++... .++|.|++.+
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~ 144 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSD 144 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 56888877776665444 667788889999998865 2 1234566889999999988655432 4678899999
Q ss_pred CCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
++|..+...+...++..+....+ ....... |.+.+.+.+.+.++++++++..+.+|++|... +.+
T Consensus 145 P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~-------------d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~-~~~ 210 (420)
T 4h51_A 145 PTWPNHYGVVKAAGWKNICTYAYYDPKTVSL-------------NFEGMKKDILAAPDGSVFILHQCAHNPTGVDP-SQE 210 (420)
T ss_dssp SCCTHHHHHHHHTTCCCEEEEECEEGGGTEE-------------CHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC-CHH
T ss_pred CCchhHHHHHHHcCCeEEEeeccccccccCC-------------CHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC-CHH
Confidence 88876544333333333322111 1111111 78888888876656777777766666666555 555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hccc---Ccccc-ccCC---Ccchhhhhhhcc-CCccceeeeehHHHHHH---h
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE-YFGV---TPDLTTLGKIIG-GGLPVGAYGGRRDIMEM---V 229 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~---~~~~~-~~~~---~~di~s~sK~~~-~G~~iG~v~~~~~~~~~---~ 229 (368)
++++|+++|+++++++|+||+|.+| ..+. .+... ..+. ..-+.||||.++ .|||+||+++..+..+. +
T Consensus 211 ~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~ 290 (420)
T 4h51_A 211 QWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADV 290 (420)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHH
Confidence 5999999999999999999999988 4321 11111 1111 222458999999 89999998664322111 1
Q ss_pred c-CCCCccccccCCCCHHHHHHHHHHHHH--Hc----c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEE
Q 017633 230 A-PAGPMYQAGTLSGNPLAMTAGIHTLKR--LK----E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 300 (368)
Q Consensus 230 ~-~~~~~~~~~t~~~~~~~~~a~~~~l~~--~~----~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (368)
. ...........+++..++.++...+.. +. + +.++++++++++.+.+.|++.+....+.......|.|.+.
T Consensus 291 ~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~ 370 (420)
T 4h51_A 291 KSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFL 370 (420)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEEC
T ss_pred HHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEec
Confidence 1 000111223334556666665555431 00 0 1233444444444444444432111111112233444433
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhhC
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~ 368 (368)
-+ . .+.++.|.++||++.+++ |++++ .+++.+++++++|.++++++
T Consensus 371 gl--------------s----~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 371 GL--------------S----KAQCEYCQNHNIFITVSG----RANMAGLTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp CC--------------C----HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHHHHHHHHHHHC--
T ss_pred Cc--------------C----HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHHHHHHHHHHHHHh
Confidence 22 1 234577889999998876 66554 59999999999999998653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=192.36 Aligned_cols=316 Identities=16% Similarity=0.106 Sum_probs=199.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
.+|++++++.+.... ...+++.+...+|+++++++++. +.+++++||++|+..+++.+ ..++|.|++..++|....
T Consensus 16 p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~-~~~~~~~~gt~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~ 91 (347)
T 1jg8_A 16 PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETFGK-EAALFVPSGTMGNQVSIMAH--TQRGDEVILEADSHIFWY 91 (347)
T ss_dssp CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCHHHHS
T ss_pred CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHhCC-ceEEEecCcHHHHHHHHHHh--cCCCCEEEEcCcchhhhc
Confidence 678888888654322 12234567788999999999863 46788889999999888765 346788999887765422
Q ss_pred h--hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCC-CcccCCHHHH
Q 017633 90 D--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNS-GFIAPKPDFL 163 (368)
Q Consensus 90 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~-g~~~~~~~~l 163 (368)
. ......|..+... . ...+.. |+++++++++.. .++++++++++++|++ |.+.+ .+.+
T Consensus 92 ~~~~~~~~~g~~~~~v-~-~~~~~~-------------d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~-~~~l 155 (347)
T 1jg8_A 92 EVGAMAVLSGVMPHPV-P-GKNGAM-------------DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP-LENI 155 (347)
T ss_dssp STTHHHHHTCCEEEEE-C-EETTEE-------------CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC-HHHH
T ss_pred cccchhhccCeEEEEe-c-CCCCcc-------------CHHHHHHHhccccccccCceEEEEeccccccCCccCc-HHHH
Confidence 2 1223333322211 1 001101 899999998742 1268888888777777 65554 4459
Q ss_pred HHHHHHHHHhCCEEEEehhhhch---hcccCcccccc--CCCcchhhhhhhccCCcccee-eeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYF--GVTPDLTTLGKIIGGGLPVGA-YGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~---~~g~~~~~~~~--~~~~di~s~sK~~~~G~~iG~-v~~~~~~~~~~~~~~~~~~ 237 (368)
++|+++|++||+++|+||+|... ..+. ....+ +...-++++||++++ ++|+ ++.++++++.+..... ..
T Consensus 156 ~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~-~~ 230 (347)
T 1jg8_A 156 KEICTIAKEHGINVHIDGARIFNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVGSVVVGDRDFIERARKARK-ML 230 (347)
T ss_dssp HHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSCEEEEECHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHhcccccEEEEecccccCC--CceEEEEcCHHHHHHHHHHHH-Hc
Confidence 99999999999999999987421 1111 11111 222124579999975 3674 5668877766542111 12
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+++...+.+.++++..+++... + ..++..++++++++.|++. ..... ..+..++++|+.+.. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~~~~~~~~------------~ 293 (347)
T 1jg8_A 231 GGGMRQAGVLAAAGIIALTKMV-D-RLKEDHENARFLALKLKEI--GYSVN-PEDVKTNMVILRTDN------------L 293 (347)
T ss_dssp TCCCSSTHHHHHHHHHHHHHSS-T-THHHHHHHHHHHHHHHHHH--TCBCC-GGGCCSSEEEEECTT------------S
T ss_pred CCchhHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhc--Cceec-cCCCcceEEEEEccc------------c
Confidence 2333445566666666776432 2 3445556777888888765 12111 112345677776521 0
Q ss_pred cHHHHHHHHHHHHcCeeecCCCCCccccc--cCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|.++||.+++++...+|++ ..++++|+++++++|++++.+
T Consensus 294 ~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 294 KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp SSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 12257899999999999998765556654 556999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-24 Score=193.94 Aligned_cols=313 Identities=12% Similarity=0.075 Sum_probs=193.1
Q ss_pred cHHHHHHHHHHHHcC--CCCCC-----CChh---HH-HHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 11 YLQVLAALGETMKKG--TSFGA-----PCLL---EN-VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~--~~~~~-----~~~~---~~-~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
+|++++++.+++.+. ..|.. ..+. .+ ..+++++++++-....+++++|++|+..+++.+ ..+++.|+
T Consensus 36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~--~~~gd~Vl 113 (407)
T 2dkj_A 36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMAL--MEPGDTLM 113 (407)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEEE
T ss_pred CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHh--cCCCCEEE
Confidence 899999999988641 11210 1111 12 123478888763334345557899999999877 45678999
Q ss_pred EEcCCCCCCc--hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEE-cccCCCCCcc
Q 017633 80 KFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFI 156 (368)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~-~~~~~~~g~~ 156 (368)
+..++|++.. ...+...|..+....++... +. ...|++++++.++.. +++++++ +|+++ ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~---~~~d~~~l~~~l~~~--~~~~v~~~~p~~~---~~ 177 (407)
T 2dkj_A 114 GMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP--------DT---ELIDLEEVRRLALEH--RPKVIVAGASAYP---RF 177 (407)
T ss_dssp EECGGGTCCGGGTCTTSHHHHHSEEEEECCCT--------TT---SSCCHHHHHHHHHHH--CCSEEEECCSSCC---SC
T ss_pred EecccccCccchHHHHHhcCceEEEEecCCCc--------cc---CccCHHHHHHHHhhc--CCeEEEEeccccC---CC
Confidence 9999888763 12222222211111111000 00 011899999999742 4566666 55553 44
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEehhhhc-h-hcccCccccccCCCcchh--hhhhhccCCccceeeeeh-HHHHHHhcC
Q 017633 157 APKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVAP 231 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~~~~~li~De~~~~-~-~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~-~~~~~~~~~ 231 (368)
.+ +++|.++|++||+++|+||+|++ + ..+.... ... .+|++ |+||+++ |+|+||++++ +++++.+..
T Consensus 178 ~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~~~G~~~~~~~~~~~~l~~ 249 (407)
T 2dkj_A 178 WD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GPRGGLILSNDPELGKRIDK 249 (407)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CCSCEEEEESCHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CCCceEEEECCHHHHHHHHh
Confidence 55 99999999999999999999975 5 4443211 111 14554 8999886 6688999998 788877653
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCCC
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPV 307 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 307 (368)
... .+.+.+.++..++++.++++.+.. +++.++++++++++++.|++. +..... +..++++++.+...
T Consensus 250 ~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 321 (407)
T 2dkj_A 250 LIF--PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR----GYRIVTGGTDNHLFLVDLRPK-- 321 (407)
T ss_dssp HHT--TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGG--
T ss_pred hhc--ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----CceeecCCCCceEEEEECccc--
Confidence 111 223334566666677777776532 334555666666666666553 332211 24567777776310
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC----------Ccccccc------CCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTSL------AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~----------~~~~~~~------~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|.++||.+.++.. ..+|++. ..+++++++++++|++++.+
T Consensus 322 ----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 322 ----------GLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ----------TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 11246788899999999988642 1234443 27999999999999998754
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=193.75 Aligned_cols=285 Identities=12% Similarity=0.037 Sum_probs=189.5
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhh---hhcCCCccccCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 107 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 107 (368)
+.+...+++++++++++.. ++++++||++|+..+++.+ ..+++.|++..+.|++...... ...|
T Consensus 62 ~~~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g---------- 128 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGE-AGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFG---------- 128 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTT----------
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcC----------
Confidence 5788899999999998743 6677778999999999876 3467899999998887543331 2222
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchh
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 187 (368)
.+++.++.+|++++++.++ ++++++++++.++++|.+.+ +++|+++|++||+++|+||+|....
T Consensus 129 ---------~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~ 192 (398)
T 2rfv_A 129 ---------INVRFVDAAKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSPY 192 (398)
T ss_dssp ---------CEEEEECTTSHHHHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred ---------CEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 2344455558999999987 47889999888888898887 9999999999999999999997441
Q ss_pred cccCccccccCCCcchhhhhhhcc-CCccc-eeeeehHHHHH-HhcCCCCccccc-cCCCCHHHHHHHHHHHHHHccCCH
Q 017633 188 LAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGT 263 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~sK~~~-~G~~i-G~v~~~~~~~~-~~~~~~~~~~~~-t~~~~~~~~~a~~~~l~~~~~~~~ 263 (368)
.+. ...++.+..+.|+||.++ +|+|+ ||+++++++++ .+.. ..... +.+.+++.++++.++++.+ +.+
T Consensus 193 ~~~---~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 264 (398)
T 2rfv_A 193 CQQ---PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV---GLKDITGGCMSPFNAWLTLRGVKTL--GIR 264 (398)
T ss_dssp TCC---GGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT---HHHHTTCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred cCC---chhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHhhhhhH--HHH
Confidence 111 112344444578999998 58898 99999888776 5542 22333 4567888888888887643 234
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HhcCCceE----EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH
Q 017633 264 YEYLNKITGELTQGIIDAG----------KKAGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 329 (368)
Q Consensus 264 ~~~~~~~~~~l~~~l~~~~----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (368)
.++..++.+.+.+.|++.. ...+.... ..+.++++++.+.. ...+...+.+.+.
T Consensus 265 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~l~~~~~ 332 (398)
T 2rfv_A 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG------------GLEAGRRMINSVE 332 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC------------CHHHHHHHHHhCC
Confidence 4555666666666665421 00000000 01357777877631 1123344555555
Q ss_pred HcCeeecCCCC---------------------------Ccccc--ccCCCHHHHHHHHHHHHHH
Q 017633 330 EEGVYFAPSQF---------------------------EAGFT--SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 330 ~~Gi~~~~~~~---------------------------~~~~~--~~~~~~~~i~~~~~~l~~~ 364 (368)
..|+.+++|+. ..+|+ ....+++++++++++|+++
T Consensus 333 ~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 333 LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 55777766521 22343 3455778888888877654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=194.59 Aligned_cols=300 Identities=14% Similarity=0.049 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh-hcCCC--ccccCCCCC-
Q 017633 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSG--VATLGLPDS- 108 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~- 108 (368)
+...++++.+++.++..+.+++++|||+|++.+++.+ .++++||++.++||+.....+. ..+.+ +.....+..
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 111 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTE 111 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccc
Confidence 4566778888888874478999999999999988654 4788999999999886443322 22321 111111100
Q ss_pred -CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchh
Q 017633 109 -PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 187 (368)
Q Consensus 109 -~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 187 (368)
.... ......|++++++++++. +++++++..+++++|.+.+ .+++++|+++|++||+++|+|++++
T Consensus 112 ~~~~~-------~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~--- 178 (379)
T 3ke3_A 112 DTEAP-------KPFAPVDIETAVAKIKED--KSAIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIAS--- 178 (379)
T ss_dssp CCSSC-------CCEECCCHHHHHHHHHHH--TCSEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTC---
T ss_pred ccccc-------CCCCCCCHHHHHHHHhhc--CCcEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEeccc---
Confidence 0000 000112899999999642 5667777777777776555 5569999999999999999999986
Q ss_pred cccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC--Cccc-----------------cccCCCCHHHH
Q 017633 188 LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--PMYQ-----------------AGTLSGNPLAM 248 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~--~~~~-----------------~~t~~~~~~~~ 248 (368)
.+..+....++.+..+.+++|+++++.++|++++++++++.+.... .++. ..+++.+...+
T Consensus 179 g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~ 258 (379)
T 3ke3_A 179 GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSL 258 (379)
T ss_dssp TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHH
T ss_pred CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHH
Confidence 2334455566776667788899987778999999999888776421 1111 01236788888
Q ss_pred HHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ccc-eEEEEeecCCCcccchhcccccHHHH
Q 017633 249 TAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISG-MFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 249 ~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
+++.++++.+.++ .+.++..++++++++.|+++ ++...... ..+ +..+.. +... .
T Consensus 259 ~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----g~~~~~~~~~~~~~i~~~~~--------------~~~~-~ 319 (379)
T 3ke3_A 259 RQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK----GIESVAAEGFEAPGVVVSYT--------------ERDD-M 319 (379)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCBSBCTTCBCSSEEEEEC--------------SCHH-H
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc----CCEecCCccccCceEEEEcc--------------CCcc-h
Confidence 8888999887654 34455556666666666553 33211111 122 222221 1111 2
Q ss_pred HHHHHHHHcCeeecCCCC---------Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 323 RFYRGMLEEGVYFAPSQF---------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 323 ~~~~~l~~~Gi~~~~~~~---------~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.+.|.++||.+.++.. ..+|+ +..++++|+++++++|++++++
T Consensus 320 ~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 320 HKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp HSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 236778899999988742 23444 4457999999999999998865
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=188.01 Aligned_cols=311 Identities=12% Similarity=0.042 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
|++++++.+++......+++.+...++++.++++++..+.++++ ||++|++.+++.+. ..+++.|++..++|++....
T Consensus 17 ~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~-sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~~ 94 (388)
T 1b9h_A 17 DAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVT-NGTHALELALQVMG-VGPGTEVIVPAFTFISSSQA 94 (388)
T ss_dssp HHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEES-CHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCCeEEEeC-CHHHHHHHHHHHcC-CCCcCEEEECCCccHHHHHH
Confidence 89999999998764222345677899999999999754555555 68999999997652 24678999999998886544
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
. ...|..+.........+.. |+++|+++++ +++++++ |++ ++|.+.+ +++|.++|+
T Consensus 95 ~-~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~--~~n-~tG~~~~----l~~i~~la~ 150 (388)
T 1b9h_A 95 A-QRLGAVTVPVDVDAATYNL-------------DPEAVAAAVT---PRTKVIM--PVH-MAGLMAD----MDALAKISA 150 (388)
T ss_dssp H-HHTTCEEEEECBCTTTCCB-------------CHHHHHHHCC---TTEEEEC--CBC-GGGCCCC----HHHHHHHHH
T ss_pred H-HHcCCEEEEEecCCCcCCC-------------CHHHHHHhcC---cCceEEE--EeC-CccCcCC----HHHHHHHHH
Confidence 3 3333333221111111111 8999999986 3677766 444 4677776 999999999
Q ss_pred HhCCEEEEehhhhc-h-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHH-H--HHHhc---CCCC------c-
Q 017633 172 ENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD-I--MEMVA---PAGP------M- 235 (368)
Q Consensus 172 ~~~~~li~De~~~~-~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~-~--~~~~~---~~~~------~- 235 (368)
+||++||+||+|+. + ..+. ....++ ..++.||||.++ +|.++|+++++++ + ++.+. ..+. +
T Consensus 151 ~~~~~li~D~a~~~g~~~~~~--~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (388)
T 1b9h_A 151 DTGVPLLQDAAHAHGARWQGK--RVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYF 227 (388)
T ss_dssp HHTCCBCEECTTCTTCEETTE--EGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCC
T ss_pred HcCCEEEEecchhcCCccCCe--eccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccce
Confidence 99999999999963 3 2222 122233 345678885544 3458999988764 5 45442 1110 0
Q ss_pred --cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE------eeccceEEEEeecCCC
Q 017633 236 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEGPV 307 (368)
Q Consensus 236 --~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 307 (368)
..+.++..+++.++++...++.+ ++..++++++++++.+.|+++ .++.... ...++++++.+...
T Consensus 228 ~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (388)
T 1b9h_A 228 HKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI---DGVVPQGGDVRADRNSHYMAMFRIPGL-- 300 (388)
T ss_dssp CCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS---TTCEECCCCTTCCBCCCSEEEEECTTC--
T ss_pred eecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC---CCccccCCCcCCCccceEEEEEEeCCc--
Confidence 00122335666666555544433 224455555555555555442 1221111 12345677765210
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCCCc---------------------------------ccc--ccCC-CH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------------------------------GFT--SLAH-SS 351 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~---------------------------------~~~--~~~~-~~ 351 (368)
...+..++.+.|.++||.++++..+. +++ ...+ ++
T Consensus 301 ---------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ 371 (388)
T 1b9h_A 301 ---------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGE 371 (388)
T ss_dssp ---------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCH
T ss_pred ---------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCH
Confidence 11346789999999999998764321 122 2356 89
Q ss_pred HHHHHHHHHHHHHHhh
Q 017633 352 DDIQHTITAAEKVLRQ 367 (368)
Q Consensus 352 ~~i~~~~~~l~~~l~~ 367 (368)
+|++++++.|++++++
T Consensus 372 edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 372 PELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998865
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=198.10 Aligned_cols=314 Identities=14% Similarity=0.059 Sum_probs=179.5
Q ss_pred CCCcHHHHHHHHHHHHcCCC-----CC---CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh--cCCc
Q 017633 8 FPSYLQVLAALGETMKKGTS-----FG---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TGRE 76 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~-----~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--~~~~ 76 (368)
+..+|++++++.+++..... +. ...+...+++++++++++ +++++++++||++|+..+++.+..+ .++|
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd 109 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGR 109 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCC
Confidence 35688999999998864211 10 123457889999999998 6689999999999999999766411 3567
Q ss_pred -eEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 77 -RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 77 -~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.|++....|++........ .|..+...+... .+.. |+++++++++ ++++++++++.++++
T Consensus 110 ~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~l~~~i~---~~~~~v~~~~~~npt 172 (400)
T 3vax_A 110 RHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGRI-------------SVEGVMERLR---PDTLLVSLMHVNNET 172 (400)
T ss_dssp CEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCCC-------------CHHHHHTTCC---TTEEEEECCSBCTTT
T ss_pred CEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCCc-------------CHHHHHHhcC---CCceEEEEECCCCCc
Confidence 8888877776654433333 232222211111 1111 8999999887 478899999888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhccCCccceeee-ehHH-HH---
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYG-GRRD-IM--- 226 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~-~~~~-~~--- 226 (368)
|.+.+ +++|.++|++||+++|+||+|+.. .. ..+.... +|+ .++||.++ +.++|+++ ++++ +.
T Consensus 173 G~~~~----l~~i~~la~~~~~~li~D~a~~~~---~~-~~~~~~~-~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~ 242 (400)
T 3vax_A 173 GVIQP----VAELAQQLRATPTYLHVDAAQGYG---KV-PGDLTTP-IDMISISGHKIGA-PKGVGALVTRRREEMDDER 242 (400)
T ss_dssp CBBCC----HHHHHHHHTTSSCEEEEECTTTTT---TS-GGGGGSC-CSEEEEETGGGTS-CSSCEEEEECBCSSSTTCB
T ss_pred eeeCc----HHHHHHHHHhcCCEEEEEhhhhcC---CC-CcChhhc-CcEEEEeHHHhCC-CCceEEEEEecchhccccc
Confidence 98888 999999999999999999999621 11 1111122 555 46779544 34578877 7651 11
Q ss_pred HHhcC----CCCccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee---ccce
Q 017633 227 EMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY---ISGM 297 (368)
Q Consensus 227 ~~~~~----~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~ 297 (368)
..+.. ..........+.+..+++++.++++.+.+ +.+.++++++++++++.|+ ..+....... .+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~ 318 (400)
T 3vax_A 243 VPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA----STSFQVNGDQDHVVPHI 318 (400)
T ss_dssp CCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT----TTTCEECSCTTSBCTTE
T ss_pred cccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC----CCCEEEeCCcccCCCCE
Confidence 11111 01111122345677788777788876643 2334444445555544444 1222111111 1245
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-----------------------CCcccccc---CCCH
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTSL---AHSS 351 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----------------------~~~~~~~~---~~~~ 351 (368)
+++.+. ..+..++.+.|. +||.++++. ...+|+++ ..++
T Consensus 319 ~~~~~~--------------~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~ 383 (400)
T 3vax_A 319 LNLSFE--------------DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATD 383 (400)
T ss_dssp EEEECT--------------TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----
T ss_pred EEEEeC--------------CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCH
Confidence 555432 123478899999 999998853 13345444 5689
Q ss_pred HHHHHHHHHHHHHHhh
Q 017633 352 DDIQHTITAAEKVLRQ 367 (368)
Q Consensus 352 ~~i~~~~~~l~~~l~~ 367 (368)
+++++++++|++++++
T Consensus 384 e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 384 LDVEELARGVAKLKPS 399 (400)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998764
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=196.29 Aligned_cols=318 Identities=14% Similarity=0.050 Sum_probs=196.8
Q ss_pred CcHHHHHHHHHHHHcC----CC-CC-C--CChhHHHHHHHHHhhCCCC---CeE--EEeCChHHHHHHHHHHHHHhc---
Q 017633 10 SYLQVLAALGETMKKG----TS-FG-A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFT--- 73 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~----~~-~~-~--~~~~~~~l~~~l~~~~~~~---~~v--~~~~~gt~a~~~al~~~~~~~--- 73 (368)
+++.+.+++.+++... .. +. + ..+.+.++.+++++.++-. +++ ++++||++|+..++++++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 5677777776665431 11 11 1 1245567778889988732 577 999999999999998886543
Q ss_pred ---CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 74 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 74 ---~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
+++.|++..++|++. ...+...|.++....... .+.. |+++|+++++ ++++++++++.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~~-~~~~~~~G~~v~~v~~~~-~~~~-------------d~~~Le~~i~---~~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAF-DKAAQYFGIKLVRTPLDA-DYRA-------------DVAAMREAIT---PNTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTHH-HHHHHHHTCEEEEECBCT-TSCB-------------CHHHHHHHCC---TTEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchHH-HHHHHHcCCeeEEeeeCC-CCCC-------------CHHHHHHHhc---cCCEEEEEeCCC
Confidence 127888888777764 333444444433322211 1111 8999999997 468888888888
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-h-----ccc---CccccccCCCcchhhhhhhccCCccceeeee
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~-----~g~---~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~ 221 (368)
+++|.+.+ +++|+++|++||++||+||+|.++ . .|. .+.....+.+..+.+++|.+.+|.++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88898888 999999999999999999999875 2 122 2223344544445577899888889999988
Q ss_pred hHHHHHHhcCC------CCccccc--cCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 222 RRDIMEMVAPA------GPMYQAG--TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 222 ~~~~~~~~~~~------~~~~~~~--t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
+++........ +...... ..+.+.....++.++++.+.. +++.++..++++++++.|++ .+....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA----IPSLKI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----STTCEE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEE
Confidence 76554432210 0000011 112333334445555555433 23455556666666666554 321112
Q ss_pred EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Ccccc---ccCCCHHHHHHHHHHHHHHHh
Q 017633 291 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT---SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~~---~~~~~~~~i~~~~~~l~~~l~ 366 (368)
......++++.. ...+..++.+.|.++||.+..... ..+++ ...++++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~--------------~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVAS--------------DELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEEC--------------SSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeC--------------CCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 222244555543 112347899999999998843221 22333 245578999999999999885
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 468 ~ 468 (514)
T 3mad_A 468 Q 468 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=193.23 Aligned_cols=321 Identities=13% Similarity=0.024 Sum_probs=187.4
Q ss_pred eeccCC-CcHHHHHHHHHHHHcC-----CCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 4 LIILFP-SYLQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 4 ~~~~g~-~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
+.++|. .+|.+.+++.+.++.. ...+.+.+...+|+++++++++.. ..++++||++|+..+++.+... +++.
T Consensus 12 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~-~~i~~~~G~~a~~~al~~~~~~-gd~~ 89 (357)
T 3lws_A 12 TTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMD-DAVFFPSGTMAQQVALRIWSDE-TDNR 89 (357)
T ss_dssp CSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHHHH-HTCC
T ss_pred hcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCC-cEEEecCcHHHHHHHHHHHhhc-CCCc
Confidence 345555 6666777777766541 122334567889999999998753 4455578999999998776543 2322
Q ss_pred EEEEcCCCCCCchh---hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC-
Q 017633 78 IIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS- 153 (368)
Q Consensus 78 vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~- 153 (368)
+++.++.+|..... .....+..... ++...+. -|+++++++. + ++++++++.+|++
T Consensus 90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~-------------~d~~~l~~~~----~-~~~v~~~~p~np~~ 149 (357)
T 3lws_A 90 TVAYHPLCHLEIHEQDGLKELHPIETIL--VGAADRL-------------MTLDEIKALP----D-IACLLLELPQREIG 149 (357)
T ss_dssp EEEECTTCHHHHSSTTHHHHHSSCEEEE--CSCTTSC-------------CCHHHHHTCC----S-CSEEEEESSBGGGT
T ss_pred EEEecccceeeeeccchhhhccCcEEEE--ecCCCCC-------------cCHHHHhcCc----C-cceEEEEcccccCC
Confidence 55555555432221 12222332221 1111111 1788888762 2 5666666665554
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhc-h--hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhc
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F--RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~--~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~ 230 (368)
|. ..+.+++++|+++|++||++||+||+|.. . ..+.....-......-+.|+||++++... |++++++++++.+.
T Consensus 150 G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~ 227 (357)
T 3lws_A 150 GV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG-AILAGPAAFCQTAR 227 (357)
T ss_dssp SB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHH
T ss_pred ce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce-EEEEcCHHHHHHHH
Confidence 55 55566699999999999999999999852 1 22221100001111124589999964323 88899998887775
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcc
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 309 (368)
..... .+.+.......++++.++++.. .+..+++.++++++++.|+++ .+... ..+..++++|+.+...
T Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~---- 297 (357)
T 3lws_A 228 IWKRR-YGGDLISLYPYIVSADYYYELR--KDRMGQYYEQAKQLAEQFNAL---PGVHTTPEVPVSNMFHLHFDGQ---- 297 (357)
T ss_dssp HHHHH-TTCCCSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEEESC----
T ss_pred HHHHH-hcCCcccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC---CCCeeccCCCcceEEEEEecCC----
Confidence 21111 1122222334444555666543 223445566667776666552 12221 1234567778876421
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeecCCCCC-----cccc-----ccCCCHHHHHHHHHHHHHHH
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-----AGFT-----SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~~~~-----~~~~~~~~i~~~~~~l~~~l 365 (368)
...+..++.+.|.++||.+.++..+ .+++ ....+++++++++++|++++
T Consensus 298 -------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 298 -------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 1123578889999999999987421 2233 24468999999999999875
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=191.25 Aligned_cols=305 Identities=13% Similarity=0.063 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
|++++++.+++... .| .+.+...++++.++++++.. ++++++||++|+..+++.+. ..+++.|++..++|++...
T Consensus 44 ~~v~~a~~~~~~~~-~y-~~~~~~~~l~~~la~~~~~~-~~v~~~~Gt~a~~~~l~~~~-~~~gd~vl~~~~~~~~~~~- 118 (399)
T 2oga_A 44 AETDAAIARVLDSG-RY-LLGPELEGFEAEFAAYCETD-HAVGVNSGMDALQLALRGLG-IGPGDEVIVPSHTYIASWL- 118 (399)
T ss_dssp HHHHHHHHHHHHHT-CC-SSSHHHHHHHHHHHHHTTSS-EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHH-
T ss_pred HHHHHHHHHHHhcC-CC-CCchhHHHHHHHHHHHHCCC-eEEEecCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHH-
Confidence 78999998888753 23 34577899999999999743 67788899999999997652 2467899999999887543
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
.+...|..+...+....... .|++++++.++ +++++++++ +++|...+ +++|.++|+
T Consensus 119 ~~~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~i~---~~~~~v~~~---n~tG~~~~----l~~i~~l~~ 175 (399)
T 2oga_A 119 AVSATGATPVPVEPHEDHPT-------------LDPLLVEKAIT---PRTRALLPV---HLYGHPAD----MDALRELAD 175 (399)
T ss_dssp HHHHTTCEEEEECBCSSSSS-------------BCHHHHHHHCC---TTEEEECCB---CGGGCCCC----HHHHHHHHH
T ss_pred HHHHCCCEEEEEecCCCCCC-------------cCHHHHHHhcC---CCCeEEEEe---CCcCCccC----HHHHHHHHH
Confidence 33444443322211110111 18999999987 367777642 34677776 999999999
Q ss_pred HhCCEEEEehhhhchhcccCccccccCCCcchhhh----hhhccC-Cccceeeeeh-HHHHHHhcC---CCC---c---c
Q 017633 172 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RDIMEMVAP---AGP---M---Y 236 (368)
Q Consensus 172 ~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~----sK~~~~-G~~iG~v~~~-~~~~~~~~~---~~~---~---~ 236 (368)
+||+++|+||+|+.+.. +....++..+|++++ ||.+++ | ++|+++.+ +++++.+.. .+. + .
T Consensus 176 ~~~~~li~Dea~~~g~~---~~~~~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 251 (399)
T 2oga_A 176 RHGLHIVEDAAQAHGAR---YRGRRIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHET 251 (399)
T ss_dssp HHTCEECEECTTCTTCE---ETTEETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCS
T ss_pred HcCCEEEEECcccccCc---cCCeecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccc
Confidence 99999999999964310 111123333466544 699996 8 99999875 777665542 111 0 0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceE-EeeccceEE--EEeecCCCcccch
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAIC-GGYISGMFG--FFFTEGPVYNFED 312 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~ 312 (368)
.+.++..++++++++.++++.+. .+.++..++.+++++.| .+. +.... .+..+..+| +.+..
T Consensus 252 ~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~~~~~~~~~~~~~~~-------- 317 (399)
T 2oga_A 252 KGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGL----AGLPGIGLPVTAPDTDPVWHLFTVRT-------- 317 (399)
T ss_dssp CCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHT----TTCTTCBCCCCCTTEECCCSSEEEEC--------
T ss_pred cccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----ccCCCccccCCCCCCcceeEEEEEEC--------
Confidence 12334668888888887776442 23344444444444444 333 22111 111122222 22210
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCC---------------------------Ccccc--ccCCCHHHHHHHHHHHHH
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT--SLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---------------------------~~~~~--~~~~~~~~i~~~~~~l~~ 363 (368)
.+..++.+.|.++||.++++.. ..+++ ...++++|+++++++|++
T Consensus 318 ------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 391 (399)
T 2oga_A 318 ------ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVRE 391 (399)
T ss_dssp ------SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 1246889999999999987531 12343 455699999999999999
Q ss_pred HHhhC
Q 017633 364 VLRQI 368 (368)
Q Consensus 364 ~l~~~ 368 (368)
+++++
T Consensus 392 ~~~~l 396 (399)
T 2oga_A 392 WAERV 396 (399)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 98653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=195.32 Aligned_cols=312 Identities=16% Similarity=0.084 Sum_probs=185.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCch
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 90 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 90 (368)
+|++++++.+.+. ...+++.+...+++++++++++.... ++++||++|+..+++.+... +++.+++.++.+|....
T Consensus 28 ~p~v~~ai~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~~-g~~~vvi~~~~~~~~~~ 103 (359)
T 3pj0_A 28 LTEALQNIDDNLE--SDIYGNGAVIEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWADR-KENRRVAYHPLSHLEIH 103 (359)
T ss_dssp HHHHTTTSCTTCB--CCBTTBSHHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHHH-HTCCEEEECTTCHHHHS
T ss_pred CHHHHHHHHhhcc--cCcccCCHHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHhc-CCCcEEEEeccceeeeh
Confidence 5666776666332 22334677889999999999864334 55589999999999877543 33335555555543222
Q ss_pred --hhh-hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 91 --PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 91 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
... ...|..+.. ++...+.. |+++++++ . +++++++++++++++|....+.+++++|+
T Consensus 104 ~~~~~~~~~g~~~~~--v~~~~~~~-------------d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~ 164 (359)
T 3pj0_A 104 EQDGLKELQQITPLL--LGTANQLL-------------TIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS 164 (359)
T ss_dssp STTHHHHHHCCEEEE--CSCTTSCC-------------CHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred hcchHHHhcCceEEe--cCCcCCCc-------------CHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence 111 223433322 11111111 88998887 3 46777777766555543455566699999
Q ss_pred HHHHHhCCEEEEehhhhch---hcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCC
Q 017633 168 RITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~---~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~ 242 (368)
++|++||++||+||+|..+ ..+.. ...+....|+ .++||+++++.+ |+++.++++++.+........+..+.
T Consensus 165 ~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (359)
T 3pj0_A 165 EYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGDLIS 241 (359)
T ss_dssp HHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCCcch
Confidence 9999999999999998532 11111 1111112243 489999986534 77788998888775211111112222
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
....++++..+++.. .+..+++.++++++++.|+++ .+.... .+..++++++.+.. +...+.
T Consensus 242 -~~~~~~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 304 (359)
T 3pj0_A 242 -LYPYILSADYYFEKR--IGKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVYFEN-----------SADEIG 304 (359)
T ss_dssp -CHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEESS-----------CHHHHH
T ss_pred -hHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEEecC-----------ccchhH
Confidence 333344444555543 234455666777777766653 122211 23456667776632 112346
Q ss_pred HHHHHHHHHcCeeecCCCCC------cccc-----ccCCCHHHHHHHHHHHHHHH
Q 017633 322 ARFYRGMLEEGVYFAPSQFE------AGFT-----SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 322 ~~~~~~l~~~Gi~~~~~~~~------~~~~-----~~~~~~~~i~~~~~~l~~~l 365 (368)
.++.+.|.++||.+.++..+ .+++ ....+.+++++++++|++.+
T Consensus 305 ~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 305 AILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp HHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 78999999999999998422 2233 23468999999999998763
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=190.28 Aligned_cols=307 Identities=14% Similarity=0.059 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
-++++++++.+++.... + .+.+...++++.++++++. +++++++||++|+..+++.+. ..+++.|++..++|++..
T Consensus 18 ~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~~~-~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~ 93 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLTGN-QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVSTL 93 (393)
T ss_dssp CCHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHHCC-SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHH
T ss_pred CCHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHhCC-CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHhHH
Confidence 45788999998887642 2 3567889999999999863 489999999999999997652 346788999999988764
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
. .....|..+........... .|++++++.++ ++++++++++ ++|...+ +++|.++
T Consensus 94 ~-~~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~---~~~~~v~~~~---~~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 94 N-MIVLLGANPVMVDVDRDTLM-------------VTPEHIEAAIT---PQTKAIIPVH---YAGAPAD----LDAIYAL 149 (393)
T ss_dssp H-HHHHTTCEEEEECBCTTTCC-------------BCHHHHHHHCC---TTEEEECCBC---GGGCCCC----HHHHHHH
T ss_pred H-HHHHCCCEEEEEeccCCcCC-------------CCHHHHHHhcC---CCceEEEEeC---CCCCcCC----HHHHHHH
Confidence 3 33334443322211111111 18999999987 3678777754 3566666 9999999
Q ss_pred HHHhCCEEEEehhhhc-h-hcccCccccccCCCcchh--hhh--hhccCCccceeeeeh-HHHHHHhcCCCCc-c-----
Q 017633 170 TKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM-Y----- 236 (368)
Q Consensus 170 ~~~~~~~li~De~~~~-~-~~g~~~~~~~~~~~~di~--s~s--K~~~~G~~iG~v~~~-~~~~~~~~~~~~~-~----- 236 (368)
|++||+++|+||+|+. + ..+. .++. +|++ |+| |++++| ++|+++.+ +++++.+...... .
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 9999999999999973 3 2221 2232 5655 555 777655 89999886 7776655421110 0
Q ss_pred ---------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE------Eeecc
Q 017633 237 ---------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC------GGYIS 295 (368)
Q Consensus 237 ---------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~ 295 (368)
.+.++..+++.++++...++.+ +++.++.+++.+++++.|.+ .+.... ....+
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~ 296 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMAD----LPFQPLSLPSWEHIHAW 296 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHT----SSCEECCCCSSCEECCC
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc----CCcccccCCCCCCCcee
Confidence 0011235677776666655533 22344444444555444443 332110 12334
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-------------------------cccccc--C
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSL--A 348 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-------------------------~~~~~~--~ 348 (368)
.++++.+.... ...+..++.+.|.++||.++++..+ .++++. .
T Consensus 297 ~~~~v~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~ 366 (393)
T 1mdo_A 297 HLFIIRVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPD 366 (393)
T ss_dssp SCEEEECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTT
T ss_pred EEEEEEecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCC
Confidence 46677652100 0123578999999999999886432 244443 4
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 017633 349 HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 349 ~~~~~i~~~~~~l~~~l~~ 367 (368)
++++|+++++++|++++..
T Consensus 367 ~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 367 MTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6999999999999998754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=194.56 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=193.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...+|+++++++++. +++++++||++|+..+++.+ ..++|.|++.++.|++.........
T Consensus 78 ~~~p~~~~l~~~la~~~g~-~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~------------- 141 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIEGA-PAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEIL------------- 141 (414)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHH-------------
T ss_pred CCChHHHHHHHHHHHHHCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHH-------------
Confidence 4577889999999999864 67889999999999988765 3567899999999988543221100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
...+.+++.++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++||++||+||+|+..
T Consensus 142 ---~~~g~~~~~v~~~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~--- 208 (414)
T 3ndn_A 142 ---PRWGVQTVFVDGDDLSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP--- 208 (414)
T ss_dssp ---HHTTCEEEEECTTCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH---
T ss_pred ---HHcCcEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01123455566668999999997 46788888888888888877 999999999999999999999632
Q ss_pred cCccccccCCCcchhhhhhhccC-C-ccceeeeehHHHHH-HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
.......++.+..+.|+||.+++ | +++|+++++++.+. .+.. .......+.++..++.+...++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111244555566789999995 7 89999999877655 4431 111122244666666655555433 223455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceE------------------EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHH
Q 017633 267 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 328 (368)
Q Consensus 267 ~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (368)
..++++++.+.|++. +.... ..+.|.++++.+..... ........+.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 566666666666542 22111 13457788988842100 0033456778888
Q ss_pred HHcCeeecCCCCCcc-------------------------ccccCCCHHHHHHHHHHHHHHH
Q 017633 329 LEEGVYFAPSQFEAG-------------------------FTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 329 ~~~Gi~~~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~l~~~l 365 (368)
...++.++.|+.... .+++....|+.+.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 777777776652211 1234456678888899988876
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=186.41 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=193.5
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...++++.++++++. +++++++||++|++.+++.+ ..+++.|++..+.|++........
T Consensus 63 ~~~~~~~~l~~~la~~~g~-~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~-------------- 125 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVEDA-AFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKV-------------- 125 (392)
T ss_dssp TCCHHHHHHHHHHHHHTTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHT--------------
T ss_pred CCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHH--------------
Confidence 4567788999999999864 37888899999999999866 456789999999998653332111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++ ++++++++++++|++|.+.+ +++|+++|++||+++|+||+|+..
T Consensus 126 --~~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 126 --FTGWNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp --GGGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred --HHhcCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 011223455566668999999997 47899999999888898888 999999999999999999999632
Q ss_pred cCccccccCCCcchh--hhhhhccC-C-ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di~--s~sK~~~~-G-~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
+.....+..+|++ |++|.+++ | +++|+++.+ +++.+.+.. ..+..+...+++.++++...++.+ +...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF---LQNGAGAVPGPFDAYLTMRGLKTL--VLRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 1122223345654 59999995 5 789999887 577777652 233455677888888877766543 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEE------------------eeccceEEEEeecCCCcccchhcccccHHHHHHHH
Q 017633 265 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 326 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (368)
++..++.+++.+.|++ .+....+ .+.+.++++.+.. +......+.+
T Consensus 267 ~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~------------~~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA------------GRTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC------------cHHHHHHHHH
Confidence 4555566666655544 2221111 3346788888732 1244567777
Q ss_pred HHHHcCeeecCCCCCcc----------------------ccccCCCHHHHHHHHHHHHHHH
Q 017633 327 GMLEEGVYFAPSQFEAG----------------------FTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 327 ~l~~~Gi~~~~~~~~~~----------------------~~~~~~~~~~i~~~~~~l~~~l 365 (368)
.|...|+.++.++.... .+++....++.++.++.|.+++
T Consensus 331 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 331 KTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred hCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 77777777776643110 1123355667777888887765
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=185.87 Aligned_cols=313 Identities=12% Similarity=0.087 Sum_probs=182.1
Q ss_pred CcHHHHHHHHHHHHcCCC-------CCCCC----hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKKGTS-------FGAPC----LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~-------~~~~~----~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+|++++++.+++.+... ++... +....+++.+++.++ +.++++++ +|++|++.+++.+ ..++|.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~-sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPN-SGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS-SHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEec-cHHHHHHHHHHHh--cCCCCE
Confidence 489999999888744221 11122 333345557888877 44456565 6799999999877 457889
Q ss_pred EEEEcCCCCCCchhh--hhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 78 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 78 vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
|++..++|++..... ....+.......++..... ..|+++|++++++. +++++++.+.+ .|.
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~ 177 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDG------------RIDYEKVREIAKKE--KPKLIVCGASA--YAR 177 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTTS------------SCCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCCC------------CcCHHHHHHHHHhc--CCeEEEECCcc--cCc
Confidence 999999887753311 1112221111111100000 12899999999842 46666665543 366
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcch--hhhhhhccCCccceeeeeh-HHHHHHhc
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGR-RDIMEMVA 230 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~-~~~~~~~~ 230 (368)
..+ +++|+++|++||++||+||+| .++ ..+.... . .. ..|+ .|+||++ +|+|+||++++ +++++.+.
T Consensus 178 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 178 VID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-P-FP-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-C-TT-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC-c-cc-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHh
Confidence 777 999999999999999999997 554 3332111 0 11 2354 4677999 67789999887 77777765
Q ss_pred CCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCC
Q 017633 231 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGP 306 (368)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 306 (368)
... ..+.+.+++...++++.+++..... +.+.+++.++++++.+.|.+ .++.... ...+.++++.+..
T Consensus 250 ~~~--~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~-- 321 (417)
T 3n0l_A 250 SAI--FPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD----RKFKLVSDGTDNHLVLMSFLD-- 321 (417)
T ss_dssp HHH--TTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH----TTCEEGGGSCSSSEEEEECTT--
T ss_pred hhh--CCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----CCceeccCCCCceEEEEEccc--
Confidence 211 1122224456666666666655322 23444555555666555554 3322111 1234466666532
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc----------cccc------cCCCHHHHHHHHHHHHHHHhh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA----------GFTS------LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~----------~~~~------~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..++.+.|.++||.+.+...+. +++. ..++++++++++++|++++.+
T Consensus 322 ----------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 322 ----------REFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ----------SSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----------CCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 11124678888889999998653221 2221 236789999999999998854
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=191.74 Aligned_cols=211 Identities=14% Similarity=0.046 Sum_probs=150.2
Q ss_pred ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh---hhhhcCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 108 (368)
.+...+++++++++++. +++++++||++|+..+++.+ ..+++.|++..+.|++.... .+...|
T Consensus 61 ~~~~~~l~~~ia~~~g~-~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g----------- 126 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKT-EACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFG----------- 126 (404)
T ss_dssp CHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTT-----------
T ss_pred ChHHHHHHHHHHHHhCC-CcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcC-----------
Confidence 35566999999999864 37888889999999999765 35678999999888865332 122222
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEehhhhch-
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF- 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~-~~~~li~De~~~~~- 186 (368)
.+++.++.+|++++++.++ ++++++++++.+|++|.+.+ +++|+++|++ ||+++|+||+|.++
T Consensus 127 --------~~~~~v~~~d~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 127 --------IQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp --------CEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred --------CEEEEECCCCHHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 2344555558899999887 47888888888888888887 9999999999 99999999999865
Q ss_pred hcccCccccccCCCcchhhhhhhcc-CCccc-eeeeehHHHHH-HhcCCCCccccc-cCCCCHHHHHHHHHHHHHHccCC
Q 017633 187 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 262 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~s~sK~~~-~G~~i-G~v~~~~~~~~-~~~~~~~~~~~~-t~~~~~~~~~a~~~~l~~~~~~~ 262 (368)
.. .. . .++.+..+.|+||+++ +|+|+ ||+++++++++ .+.... ... +.+.+++.+.++.++++.+ +.
T Consensus 192 ~~-~~--~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~---~~~~g~~~~~~~~~~~~~~l~~~--~~ 262 (404)
T 1e5e_A 192 IT-NP--V-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI---KDITGSVISPHDAWLITRGLSTL--NI 262 (404)
T ss_dssp TC-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC---CCCCCCCCCHHHHHHHHHHHTTH--HH
T ss_pred hC-Cc--c-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHH---HhCCCCCCCHHHHHHHHHhHhHH--HH
Confidence 21 11 1 2444444568999999 58998 99999988877 776422 212 3457888888887777633 22
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017633 263 TYEYLNKITGELTQGIID 280 (368)
Q Consensus 263 ~~~~~~~~~~~l~~~l~~ 280 (368)
..++..++.+.+.+.+++
T Consensus 263 ~~~~~~~~~~~l~~~l~~ 280 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKS 280 (404)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334445555555555544
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-23 Score=192.80 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHHHHHcCCC---C-CCC----ChhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhc----
Q 017633 9 PSYLQVLAALGETMKKGTS---F-GAP----CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT---- 73 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~---~-~~~----~~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~---- 73 (368)
++++.+.+++.+++..... + +.. .+.+.++.++++++++ + .+++++++||++|+..+++.++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3567888888888776311 1 111 2456678888888887 3 5799999999999999998876431
Q ss_pred C--CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 74 G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 74 ~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+ ++.|++..++|. .....+...|..+...+.....+.. |+++|+++++ +++++++++..++
T Consensus 155 g~~~~~Vi~~~~~h~-~~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~p~n 217 (497)
T 3mc6_A 155 GITEPEIIAPVTAHA-GFDKAAYYFGMKLRHVELDPTTYQV-------------DLGKVKKFIN---KNTVLLVGSAPNF 217 (497)
T ss_dssp CCSSCEEEEETTSCH-HHHHHHHHSCCEEEEECBCTTTCSB-------------CTTTTGGGCC---SSEEEEEEETTCT
T ss_pred CCCCceEEEeCCccH-HHHHHHHHcCCeEEEEecCcccCcC-------------CHHHHHHHHh---hCCEEEEEECCCC
Confidence 2 256777665544 4455555555544332222111111 7888888887 4688888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hc-----c--c--CccccccCCCcchhhhhhhccCCccceeeee
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----A--Y--GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 221 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~-----g--~--~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~ 221 (368)
++|.+.+ +++|+++|++||++||+||+|.++ .. + . .+.....+.+.-..+++|.+.+|.++|++++
T Consensus 218 ptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 293 (497)
T 3mc6_A 218 PHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMY 293 (497)
T ss_dssp TTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEEC
T ss_pred CCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEe
Confidence 8888877 899999999999999999999765 32 1 1 1222333442223456798888899999988
Q ss_pred hHHHHHHhcCC-CCccccc-----cC--CCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 222 RRDIMEMVAPA-GPMYQAG-----TL--SGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~-----t~--~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
+++........ ......+ ++ +.+....+++.++++.+.++ ++.++..++++++++.|++.. .++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~g~~~~ 371 (497)
T 3mc6_A 294 RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI--PDLDIM 371 (497)
T ss_dssp SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--TTCEEC
T ss_pred cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEe
Confidence 76655443211 1111111 11 11222344455555555443 234555566666666665521 122222
Q ss_pred EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 291 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
....+.++.+.. ...+..++.+.|.++||.+..+..+. ++ +. ..+++++++++++|++++++
T Consensus 372 ~~~~~~~v~~~~--------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 372 GNPRYSVISFSS--------------KTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp SCCCSSEEEEEC--------------TTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEeC--------------CCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence 223444545442 12235789999999999998765432 23 33 56899999999999998854
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=185.31 Aligned_cols=323 Identities=16% Similarity=0.064 Sum_probs=195.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCC-ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 11 YLQVLAALGETMKKGTSFGAP-CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
+|++++++.+.+... ++.+ .+...++++.++++++. +++++++||++|+..+++.+. ..+++.|++..++|++..
T Consensus 11 ~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~~~-~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 11 GGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYSKS-ENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASV 86 (394)
T ss_dssp -CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHHCC-SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGT
T ss_pred CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHH
Confidence 467888888887652 2221 24588999999999854 789999999999999997652 346789999999998876
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
..... .|..+...... ..+.. |++++++.+++.+++++++++++ ++|...+ +++|.++
T Consensus 87 ~~~~~-~g~~~~~v~~~-~~~~~-------------d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l 144 (394)
T 1o69_A 87 APICY-LKAKPVFIDCD-ETYNI-------------DVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEI 144 (394)
T ss_dssp HHHHH-TTCEEEEECBC-TTSSB-------------CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HHHHH-cCCEEEEEEeC-CCCCc-------------CHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHH
Confidence 54443 33332221111 11111 89999999985322567777765 3565555 9999999
Q ss_pred HHHhCCEEEEehhhh-ch-hcccCccccccCCCcchhhhh--hhccCCccceeeeeh-HHHHHHhcCCCCcc--------
Q 017633 170 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPMY-------- 236 (368)
Q Consensus 170 ~~~~~~~li~De~~~-~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~-~~~~~~~~~~~~~~-------- 236 (368)
|++||+++|+||+|+ ++ ..+... ..+ ..+|+.++| |.++ |.++|+++++ +++++.+.......
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~~~--~~~-~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 220 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNKAL--GTF-GEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYE 220 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEET--TSS-SSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred HHHcCCEEEEECcCcccceeCCccc--ccc-cCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence 999999999999997 55 333211 011 135788885 5554 5689999995 77776654211110
Q ss_pred ---ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-eEEEEeecCC----Cc
Q 017633 237 ---QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGP----VY 308 (368)
Q Consensus 237 ---~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~ 308 (368)
.+.++..+++.++.++..++.+ ++..++++++++++++.|.++ ............+. ++++.+.... ..
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 297 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNAC 297 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCC
T ss_pred ccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccc
Confidence 0112225666666665554433 224566666666666666553 11110000000121 3455542100 00
Q ss_pred c-c-chhcc--cccHHHHHHHHHHHHcCeeecCCCCCccc--------------------------cccCCCHHHHHHHH
Q 017633 309 N-F-EDAKK--SETTKFARFYRGMLEEGVYFAPSQFEAGF--------------------------TSLAHSSDDIQHTI 358 (368)
Q Consensus 309 ~-~-~~~~~--~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--------------------------~~~~~~~~~i~~~~ 358 (368)
. + ..... ....+..++.+.|.++||.++++..+..+ ....++++|+++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~ 377 (394)
T 1o69_A 298 QKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEIS 377 (394)
T ss_dssp CEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHH
Confidence 0 0 00000 00124678999999999999987433110 02337999999999
Q ss_pred HHHHHHHh
Q 017633 359 TAAEKVLR 366 (368)
Q Consensus 359 ~~l~~~l~ 366 (368)
++|++++.
T Consensus 378 ~~l~~~~~ 385 (394)
T 1o69_A 378 KLILKSIK 385 (394)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998874
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=194.15 Aligned_cols=338 Identities=13% Similarity=0.019 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--cCCce---EEEEcCCCC
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TGRER---IIKFEGCYH 86 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--~~~~~---vi~~~~~~~ 86 (368)
+.+++++.+++......+.+.+...+++++++++++ .+++++|+||++|++.++++++.+ .+++. ||+. ..++
T Consensus 55 ~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~-~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~ 132 (467)
T 1ax4_A 55 NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFN-YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHF 132 (467)
T ss_dssp CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHHC-CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCC
T ss_pred HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHcC-CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-cccc
Confidence 677888877776543334456778899999999985 479999999999999999887542 04555 7666 3333
Q ss_pred CCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccC-CCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 87 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
+.....+...|........... +. ........ ..|+++|+++++.+. ++++++++++++|++|...++.++++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~--~~---~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~ 207 (467)
T 1ax4_A 133 DTTAAHVELNGCKAINIVTEKA--FD---SETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLK 207 (467)
T ss_dssp HHHHHHHHHTTCEEEECBCGGG--GC---TTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred chhhHHHhccCCceeccccccc--cc---ccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHH
Confidence 4434444444443221111000 00 00000000 118999999998532 36899999988888755666777799
Q ss_pred HHHHHHHHhCCEEEEehhhhc--hh---c---ccC-ccccccC----CCcch--hhhhhhccCCccce-eeeeh-H-HHH
Q 017633 165 AIRRITKENGALLIFDEVMTG--FR---L---AYG-GAQEYFG----VTPDL--TTLGKIIGGGLPVG-AYGGR-R-DIM 226 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~--~~---~---g~~-~~~~~~~----~~~di--~s~sK~~~~G~~iG-~v~~~-~-~~~ 226 (368)
+|+++|++||++||+||++.. .. . +.. .....+. ..+|+ .++||+++ +++| +++.+ + +++
T Consensus 208 ~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g--~~~Gg~~~~~d~~~l~ 285 (467)
T 1ax4_A 208 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL--LNIGGLVAIRDNEEIF 285 (467)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC--CSSCEEEEESSCHHHH
T ss_pred HHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCC--CCcceEEEeCCHHHHH
Confidence 999999999999999998742 10 0 111 1111110 11344 36778775 3555 55566 5 776
Q ss_pred HHhcCCCCcc-ccccCCCCHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 227 EMVAPAGPMY-QAGTLSGNPL-AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 227 ~~~~~~~~~~-~~~t~~~~~~-~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+.+....... ...+++..+. .+.++..+++.+.++++.++..++++++++.|++ .+.....+..+.++|+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~ 361 (467)
T 1ax4_A 286 TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE----AGIPIQYPTGGHAVFVDCKK 361 (467)
T ss_dssp HHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TTCCBCSSCCSSEEEEESTT
T ss_pred HHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh----CCCCcccCCCceEEEEehhh
Confidence 6554211000 0112222332 2333333555443323555556677777777766 23322223345566666311
Q ss_pred CCCcccchhcccccHHHHHHHHHH-HHcCeeecC-CC----------------CCcccccc---CCCHHHHHHHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAP-SQ----------------FEAGFTSL---AHSSDDIQHTITAAEK 363 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~-~~----------------~~~~~~~~---~~~~~~i~~~~~~l~~ 363 (368)
.. ... .....+..++++.| .++||.+.+ +. ...+|+++ .++++|+++++++|++
T Consensus 362 ~~-~~~----~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 436 (467)
T 1ax4_A 362 LV-PQI----PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIG 436 (467)
T ss_dssp TC-TTS----CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred hc-ccc----ccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHH
Confidence 00 000 00112357899998 889999987 31 12344433 3789999999999998
Q ss_pred HHhh
Q 017633 364 VLRQ 367 (368)
Q Consensus 364 ~l~~ 367 (368)
++.+
T Consensus 437 ~~~~ 440 (467)
T 1ax4_A 437 LKEK 440 (467)
T ss_dssp THHH
T ss_pred HHHh
Confidence 7753
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=184.37 Aligned_cols=316 Identities=15% Similarity=0.056 Sum_probs=176.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC----------ChhHHHHH-HHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKKGTSFGAP----------CLLENVLA-EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~----------~~~~~~l~-~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+|++++++.+++.+...++++ .+...++. +.+++.++-....++++||++|++.+++.+ ..+++.|
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~--~~~gd~V 121 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLAL--AKPGDTV 121 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHc--cCCCCEE
Confidence 4899999999887532111111 12334444 667777653333355889999999999876 4578899
Q ss_pred EEEcCCCCCCchhhh--hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEc-ccCCCCCc
Q 017633 79 IKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE-PVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~-~~~~~~g~ 155 (368)
++..++|++...... ...+.......++.... .. .-|++++++.+++. ++++++++ |++ |.
T Consensus 122 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~---~~d~~~l~~~i~~~--~~~~v~~~~~~~---~~ 185 (425)
T 3ecd_A 122 LGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD--------TM---LIDYDQVEALAQQH--KPSLIIAGFSAY---PR 185 (425)
T ss_dssp EEECC------------------CEEEEECCCTT--------TS---SCCHHHHHHHHHHH--CCSEEEEECSCC---CS
T ss_pred EEcccccccceecchhhhhcccceeeeecCCCcc--------cC---ccCHHHHHHHHhhc--CCcEEEEccccC---CC
Confidence 999998887321111 12222211111111000 00 01899999999742 46666666 443 33
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhhhhccCCccceeeeeh-HHHHHHhcCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR-RDIMEMVAPA 232 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~-~~~~~~~~~~ 232 (368)
..+ +++|+++|++||++||+||+| .++ +.+....... ..+.-+.|+||++ +|+|+||++++ +.+.+.+...
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~~~ 259 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKINSA 259 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHHhh
Confidence 344 899999999999999999996 555 4443221111 1222235788999 56789999887 5666665421
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCc
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 308 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 308 (368)
...+.+.+.+...+.++..++..... +++.+++.++++++++.|.+ .++..... ..+.++++.+..
T Consensus 260 --~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~---- 329 (425)
T 3ecd_A 260 --VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA----GGVDLVTGGTDNHLLLVDLRP---- 329 (425)
T ss_dssp --HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH----TTCEEGGGSCSSSEEEEECGG----
T ss_pred --hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----CCCeeccCCCCceEEEEEeCC----
Confidence 01111113344444444445443322 23455566666666666655 33322111 345566776532
Q ss_pred ccchhcccccHHHHHHHHHHHHcCeeec----CCCC------Cccccc------cCCCHHHHHHHHHHHHHHHhh
Q 017633 309 NFEDAKKSETTKFARFYRGMLEEGVYFA----PSQF------EAGFTS------LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~------~~~~~~------~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+...+.+.|.++||.+. |+.. ..+++. ...++++++++++.|++++++
T Consensus 330 --------~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 330 --------KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp --------GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 11234678888888999998 4311 112221 234589999999999998754
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-23 Score=187.16 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=189.5
Q ss_pred cHHHHHHHHHHHHcCC--C-----CCCCChhHHH----HHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 11 YLQVLAALGETMKKGT--S-----FGAPCLLENV----LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~--~-----~~~~~~~~~~----l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
+|++++++.+++.+.. . +........+ ++++++++++.....++++||++|+..+++.+ ..+++.|+
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~--~~~gd~Vl 113 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTV--LEHGDTVL 113 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEEE
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHh--cCCCCEEE
Confidence 8999999998885311 1 1111223334 44688888873344455567899999999877 45678899
Q ss_pred EEcCCCCCCchhh--hhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 80 KFEGCYHGHADPF--LVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 80 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+..+.|+...... ....|.+.....++. ... ..|++++++.+++. +++++++++.+ .|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~--~~~ 176 (405)
T 2vi8_A 114 GMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH-------------VIDYDDVREKARLH--RPKLIVAAAAA--YPR 176 (405)
T ss_dssp EECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC-------------SBCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EecccccchhcccchhhhccceeEEEecccccccC-------------CcCHHHHHHHHHhc--CCeEEEEeCCC--CCc
Confidence 8887765543211 112221111100110 011 11899999999842 45677775433 343
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCC-Ccchh--hhhhhccCCccceeeeehHHHHHHhcCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~ 232 (368)
..+ +++|.++|++||++||+||+|+....+.... .+.+ .+|++ |+||+++|+.+ ||+++++++++.+...
T Consensus 177 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~ 249 (405)
T 2vi8_A 177 IID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKA 249 (405)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEEccccccccccCcC--CCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhh
Confidence 444 9999999999999999999997321111111 1111 35654 89999985444 9999998888776531
Q ss_pred CCccccccCC-CCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCC
Q 017633 233 GPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 307 (368)
Q Consensus 233 ~~~~~~~t~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 307 (368)
. ...+++ .++..++++.++++.+.. +++.+++.++++++++.|++. +.....+ +.++++++.+...
T Consensus 250 ~---~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 320 (405)
T 2vi8_A 250 I---FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTLVSGGTDNHLLLVDLRPQ-- 320 (405)
T ss_dssp H---TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGG--
T ss_pred h---cccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeEecCCCCceEEEEEccCC--
Confidence 1 112222 356666666677776543 334566666666666666553 3322111 3466777776310
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCC----------CCcccccc------CCCHHHHHHHHHHHHHHHhh
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------~~~~~~~~------~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|.++||.+.++. ...+|+++ .++++++++++++|++++.+
T Consensus 321 ----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 321 ----------QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp ----------TCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred ----------CCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 1124678888999999998753 11234432 36899999999999998864
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=188.42 Aligned_cols=315 Identities=17% Similarity=0.155 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCC------ChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHh--cCCc---
Q 017633 8 FPSYLQVLAALGETMKKGTSFGAP------CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TGRE--- 76 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~--~~~~--- 76 (368)
++.+|++.+++.+.+.....+... .+...+++++++++++-...+++++||++|+..++++++.+ .+++
T Consensus 76 ~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 355688888887763221111110 14577888888888863345778899999999988766532 2333
Q ss_pred --eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 77 --RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 77 --~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+|++.. .+|+.....+...|..+....... .+.. |+++|+++++ ++++++++++.+ ++|
T Consensus 156 r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~-~~~~-------------d~~~L~~~i~---~~t~~v~~~~pn-~~G 216 (474)
T 1wyu_B 156 RRVVLVPD-SAHGSNPATASMAGYQVREIPSGP-EGEV-------------DLEALKRELG---PHVAALMLTNPN-TLG 216 (474)
T ss_dssp CCEEEEET-TSCTHHHHHHHHTTCEEEEECBCT-TSSB-------------CHHHHHHHCS---TTEEEEEECSSC-TTS
T ss_pred CCEEEEeC-CcChhhHHHHHHCCCEEEEecCCC-CCCc-------------CHHHHHHhhC---CCceEEEEECCC-CCc
Confidence 677766 666666666655555443322211 1111 8999999997 468888887653 467
Q ss_pred cc-cCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchh--hhhhhcc-C----CccceeeeehHHHH
Q 017633 155 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-G----GLPVGAYGGRRDIM 226 (368)
Q Consensus 155 ~~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~-~----G~~iG~v~~~~~~~ 226 (368)
.+ .+ +++|+++|++||+++|+||+|.....+. .....++ +|++ +++|+|+ + |+|+|+++++++++
T Consensus 217 ~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~-~~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~ 289 (474)
T 1wyu_B 217 LFERR----ILEISRLCKEAGVQLYYDGANLNAIMGW-ARPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA 289 (474)
T ss_dssp CCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTT-CCHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred ccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccC-CCcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHH
Confidence 66 34 9999999999999999999996442221 1122333 4654 5689997 2 36999999998887
Q ss_pred HHhcCC-----C-Cc----------cccccCCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 227 EMVAPA-----G-PM----------YQAGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 227 ~~~~~~-----~-~~----------~~~~t~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
+.+... + .+ ....+++.+.+++.++.+.++.+..+.+ .+++.++++++.+.|++. ++
T Consensus 290 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~----g~ 365 (474)
T 1wyu_B 290 PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK----GY 365 (474)
T ss_dssp GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TC
T ss_pred HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc
Confidence 766520 0 00 0112334677888888877765433333 566667777777777663 22
Q ss_pred ceEEeeccce--EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-----CCcccccc--CCCHHHHHHHH
Q 017633 288 AICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSL--AHSSDDIQHTI 358 (368)
Q Consensus 288 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~~~~~~~--~~~~~~i~~~~ 358 (368)
.... +...+ +++.+ . ...+..++++.|.++||.+.... ...+++++ ..+++++++++
T Consensus 366 ~~~~-~~~~~~~~~~~~-~------------~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~ 431 (474)
T 1wyu_B 366 RVPY-DGPSMHEFVAQP-P------------EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFA 431 (474)
T ss_dssp BCSS-CSSCCSCEEEBC-S------------TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred EecC-CCCcceEEEEEc-C------------CCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHH
Confidence 2111 11112 33332 0 11235789999999999864221 22345544 34899999999
Q ss_pred HHHHHHHh
Q 017633 359 TAAEKVLR 366 (368)
Q Consensus 359 ~~l~~~l~ 366 (368)
++|+++++
T Consensus 432 ~~L~~~~~ 439 (474)
T 1wyu_B 432 EAMGALLK 439 (474)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998875
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=188.69 Aligned_cols=314 Identities=16% Similarity=0.086 Sum_probs=191.0
Q ss_pred CceeccCCCcH----HHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 2 PQLIILFPSYL----QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 2 ~~~~~~g~~~~----~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
+..+.+++++| ++++++.+.+... .++.+.+...++++.++++++.. ++++++||++|++.+++.+. ..+++.
T Consensus 22 ~~~~~l~~~~p~~~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~-~~i~~~~gt~al~~~l~~~~-~~~gd~ 98 (391)
T 3dr4_A 22 SDLPRISVAAPRLDGNERDYVLECMDTT-WISSVGRFIVEFEKAFADYCGVK-HAIACNNGTTALHLALVAMG-IGPGDE 98 (391)
T ss_dssp ------CCCCCCCCSSHHHHHHHHHHHT-CCSSCSHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHT-CCTTCE
T ss_pred CCCceeccCCCCCCHHHHHHHHHHHHcC-CccCCChHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHcC-CCCcCE
Confidence 34556666554 5778887777653 22235788999999999998643 78889999999999997662 346789
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++..++|++....+. ..|..+.........+.. |++++++.++ +++++++++ +++|...
T Consensus 99 vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~~~v~~~---n~tG~~~ 158 (391)
T 3dr4_A 99 VIVPSLTYIASANSVT-YCGATPVLVDNDPRTFNL-------------DAAKLEALIT---PRTKAIMPV---HLYGQIC 158 (391)
T ss_dssp EEEESSSCTHHHHHHH-HTTCEEEEECBCTTTCSB-------------CGGGSGGGCC---TTEEEECCB---CGGGCCC
T ss_pred EEECCCchHHHHHHHH-HCCCEEEEEecCccccCc-------------CHHHHHHhcC---CCceEEEEE---CCCCChh
Confidence 9999999888654443 333333221111111111 7888888876 467777642 3567766
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhc-h-hcccCccccccCCCcchh--hhh--hhccCCccceeeeeh-HHHHHHhc
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVA 230 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~-~-~~g~~~~~~~~~~~~di~--s~s--K~~~~G~~iG~v~~~-~~~~~~~~ 230 (368)
+ +++|+++|++||+++|+||+|+. . ..+ ...+..+|+. ||| |++++ .+.|+++.+ +.+.+.+.
T Consensus 159 ~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~ 228 (391)
T 3dr4_A 159 D----MDPILEVARRHNLLVIEDAAEAVGATYRG-----KKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMR 228 (391)
T ss_dssp C----HHHHHHHHHHTTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHH
T ss_pred h----HHHHHHHHHHcCCEEEEECcccccceECC-----eeecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHH
Confidence 6 99999999999999999999963 2 211 1222223554 444 88865 468888665 45554443
Q ss_pred C---CCC--------ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-------
Q 017633 231 P---AGP--------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG------- 292 (368)
Q Consensus 231 ~---~~~--------~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------- 292 (368)
. .+. ...+.++..+.+.++++...++.+ +.+.++.+++.+++++.|.++ +......
T Consensus 229 ~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~ 302 (391)
T 3dr4_A 229 LLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL----GNRVTKPHVALTGR 302 (391)
T ss_dssp HHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG----TTSEECCCCCTTSC
T ss_pred HHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CccccCcCCCCCCc
Confidence 1 110 011223456667666655554433 334556666666666666554 2221111
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc------------------------cc--cc
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------------------GF--TS 346 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~------------------------~~--~~ 346 (368)
....++++.+... ...+..++.+.|.++||.++++..+. ++ +.
T Consensus 303 ~~~~~~~i~~~~~-----------~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 371 (391)
T 3dr4_A 303 HVFWMYTVRLGEG-----------LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTH 371 (391)
T ss_dssp CCCSSEEEEECSS-----------CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCC
T ss_pred ceeEEEEEEECCc-----------cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCC
Confidence 1222345554210 02235789999999999999774221 12 23
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 017633 347 LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l~~~l 365 (368)
..++++|+++++++|++++
T Consensus 372 ~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 372 AGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp TTCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 5679999999999998764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=189.51 Aligned_cols=308 Identities=15% Similarity=0.046 Sum_probs=193.2
Q ss_pred eeccCCCcHH----HHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 4 LIILFPSYLQ----VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 4 ~~~~g~~~~~----v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.+.++++++. +++++.+.+... .+++.+...++++.++++++. +++++++||++|++.+++.+. ..+++.|+
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~~-~~~~~~~sGt~al~~al~~~~-~~~gd~Vi 79 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVGA-KYCISCANGTDALQIVQMALG-VGPGDEVI 79 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHTT-CCTTCEEE
T ss_pred cccccccccccCHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHhC-CCCcCEEE
Confidence 3445655544 455555555442 334667889999999999864 389999999999999998662 34678999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
+..++|++...... ..|..+.........+.. |+++++++++ +++++++. + +.+|...+
T Consensus 80 ~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~--~-~~~G~~~~- 138 (367)
T 3nyt_A 80 TPGFTYVATAETVA-LLGAKPVYVDIDPRTYNL-------------DPQLLEAAIT---PRTKAIIP--V-SLYGQCAD- 138 (367)
T ss_dssp EESSSCTHHHHHHH-HTTCEEEEECBCTTTCSB-------------CGGGTGGGCC---TTEEEECC--B-CGGGCCCC-
T ss_pred ECCCccHHHHHHHH-HcCCEEEEEecCCccCCc-------------CHHHHHHhcC---cCCcEEEe--e-CCccChhh-
Confidence 98888877544433 334333222111111111 7888888886 47777773 3 34566666
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhh-ch-hcccCccccccCCCcchhhh----hhhccC-Cccceeeee-hHHHHHHhcC
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGG-RRDIMEMVAP 231 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~-~~-~~g~~~~~~~~~~~~di~s~----sK~~~~-G~~iG~v~~-~~~~~~~~~~ 231 (368)
+++|.++|++||++||+||+|+ |. ..+. ..+...|+.++ +|.+++ |. .|+++. ++++.+.+..
T Consensus 139 ---~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~ 209 (367)
T 3nyt_A 139 ---FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQ 209 (367)
T ss_dssp ---HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHH
Confidence 9999999999999999999996 23 2221 22222266554 499987 76 888877 4667665542
Q ss_pred ---CCCc------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEE
Q 017633 232 ---AGPM------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFF 301 (368)
Q Consensus 232 ---~~~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 301 (368)
.+.. ..+.++..+++.++++...++.+ +++.++.+++.+++++.|.+.....+... ........+.+.
T Consensus 210 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 287 (367)
T 3nyt_A 210 IARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVR 287 (367)
T ss_dssp HTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEE
T ss_pred HHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEE
Confidence 1110 11346678888888888877655 34556667777777777766421111100 001111122222
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Cc-----------------------ccc--ccCCCHHHHH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EA-----------------------GFT--SLAHSSDDIQ 355 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~-----------------------~~~--~~~~~~~~i~ 355 (368)
+ . +..++.+.|.++||.++.... +. +++ ...++++|++
T Consensus 288 ~--------------~--~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~ 351 (367)
T 3nyt_A 288 M--------------D--NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIK 351 (367)
T ss_dssp C--------------S--SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred e--------------C--CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 1 1 247889999999999987642 11 122 3466999999
Q ss_pred HHHHHHHH
Q 017633 356 HTITAAEK 363 (368)
Q Consensus 356 ~~~~~l~~ 363 (368)
++++.|++
T Consensus 352 ~v~~~~~~ 359 (367)
T 3nyt_A 352 IICAALTN 359 (367)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=189.37 Aligned_cols=305 Identities=11% Similarity=0.059 Sum_probs=186.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 87 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~ 87 (368)
-++++++++. .++.+.....++++.+++.++. .+++++++||++|+..+++.+ ++|.|++..+.||+
T Consensus 42 ~~~~v~~a~~-------~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~----~gd~Vl~~~~~y~~ 110 (374)
T 2aeu_A 42 IDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL----KPKKVIHYLPELPG 110 (374)
T ss_dssp CCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH----CCSEEEEECSSSSC
T ss_pred CCHHHHHHHH-------HhcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC----CCCEEEEecCCCCc
Confidence 3456666664 2333445556777777777753 378999999999999999855 67899999999988
Q ss_pred Cchh--hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE-EEEcccCCCCCcccCCHHHHH
Q 017633 88 HADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 88 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~l~ 164 (368)
+... .....|. +++.+ .|++++++. + +++++ +++++.+|++|. +...++
T Consensus 111 ~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v~~~~p~nptG~---~~~~l~ 162 (374)
T 2aeu_A 111 HPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVIITGSTMDLKVI---ELENFK 162 (374)
T ss_dssp CTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEEEECBCTTSCBC---CHHHHH
T ss_pred cHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEEEEccCCCCCCC---CcccHH
Confidence 6431 1222222 12222 288998887 3 46778 888777666663 233399
Q ss_pred HHHHHHHHhCCEEEEehhhhchhcccCcc--ccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCC
Q 017633 165 AIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~~~g~~~~--~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~ 242 (368)
+|.++|++||+++|+||+|..+..+.... ...++.+.-+.|+||+++ |+|+||+++++++++.+... ......+
T Consensus 163 ~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~~~~~~l~~~---~~~~~~~ 238 (374)
T 2aeu_A 163 KVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGKKELVDKIYIE---GTKFGLE 238 (374)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHHH---HHTTTCB
T ss_pred HHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEECHHHHHHHHHh---hccccCC
Confidence 99999999999999999996542111100 112233222347999976 57999999999988877631 1222335
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHH----HHHHHHHHHhc----CCceEEeeccceEEEEeecCCCcccchhc
Q 017633 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYISGMFGFFFTEGPVYNFEDAK 314 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (368)
.+++.++++.++++.+. .+..++..++.+.+ ++.|.+.+... ++.....+.+.++++.-. . ..
T Consensus 239 ~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~---~~---- 309 (374)
T 2aeu_A 239 AQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK-D---DT---- 309 (374)
T ss_dssp CCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES-S---HH----
T ss_pred CCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc-c---cc----
Confidence 78899999988888652 21344555555555 56666654432 222222333444333210 0 00
Q ss_pred ccccHHHHHHHHHHH-HcCeeecCCCC-----CccccccCC---CHHHHHHHHHHHHHHHhh
Q 017633 315 KSETTKFARFYRGML-EEGVYFAPSQF-----EAGFTSLAH---SSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 315 ~~~~~~~~~~~~~l~-~~Gi~~~~~~~-----~~~~~~~~~---~~~~i~~~~~~l~~~l~~ 367 (368)
....+..+++..++ ++||.+.++.. ..+|+++.. .+.+++++.+.|++++.+
T Consensus 310 -~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 310 -INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp -HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred -ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 00011234665554 67999998742 234554432 223488888888888765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=181.54 Aligned_cols=254 Identities=14% Similarity=0.102 Sum_probs=170.7
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...++++.++++++..+.+++ +||++|+..+++.+ ..+++.|++..+.|++..........
T Consensus 49 ~~~~~~~~l~~~la~~~~~~~~i~~-~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~------------ 113 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGAGAVLT-NTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAK------------ 113 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEE-SSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHT------------
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEe-CCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHH------------
Confidence 4567789999999999975455555 56899999999876 35678999999988864322211100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~ 188 (368)
..+.++..++.+|++++++.++ ++++++++++.++++|.+.+ +++|+++|++||+++|+||+|+++ ..
T Consensus 114 ----~~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 114 ----RGCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp ----TTSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred ----hcCCEEEEeCCCCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1122344555568999999998 46788888888888898887 999999999999999999999866 22
Q ss_pred ccCccccccCCCcchhhhhhhcc-CCccc-eeeeehH-HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 189 AYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 189 g~~~~~~~~~~~~di~s~sK~~~-~G~~i-G~v~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
. .. .++.+..+.|+||+++ +|.++ |++++++ ++++.+.. .....+.+.++++++++.++++.+ +...+
T Consensus 183 -~--~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 183 -N--PL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp -C--GG-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred -C--cc-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 1 11 2444444568999998 46776 9998875 77777752 223334567888888776666533 22344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceE------------------EeeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
+..++.+.+.+.+++. +.... ..+.++++.+.+.. . ..++.+.
T Consensus 254 ~~~~~~~~l~~~l~~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~ 314 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQ----PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-------------D--EQTLRRF 314 (386)
T ss_dssp HHHHHHHHHHHHHTTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------------C--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-------------C--HHHHHHH
Confidence 4555555555555442 11100 12336677776521 1 3567788
Q ss_pred HHHcCeeecC
Q 017633 328 MLEEGVYFAP 337 (368)
Q Consensus 328 l~~~Gi~~~~ 337 (368)
|.++||.+++
T Consensus 315 l~~~gi~~~~ 324 (386)
T 1cs1_A 315 LGGLSLFTLA 324 (386)
T ss_dssp HHTCSSSEEB
T ss_pred HHhCCcceEc
Confidence 8889998874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=193.21 Aligned_cols=287 Identities=11% Similarity=0.088 Sum_probs=184.5
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
..+...+++++++++++. +++++++||++|+..++++ ..+++.|++..+.|++.......
T Consensus 131 g~~~~~~l~~~la~~~g~-~~~i~~~sGt~al~~~l~~---~~~Gd~Vi~~~~~y~~~~~~~~~---------------- 190 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDKA-DRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQ---------------- 190 (464)
T ss_dssp CCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHH---hCCCCEEEEECCCchhHHHHHHH----------------
Confidence 455788899999998863 4778888999999887752 35778999999988764321100
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
.....+.+++.++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++||+++|+||+|.. +.
T Consensus 191 ~~~~~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~---g~ 260 (464)
T 1ibj_A 191 VVPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS---PV 260 (464)
T ss_dssp TSGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC---TT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc---cc
Confidence 0111233455566668999999997 47899999998888898887 99999999999999999999963 22
Q ss_pred CccccccCCCcchhhhhhhccC--Cccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHH
Q 017633 191 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267 (368)
Q Consensus 191 ~~~~~~~~~~~di~s~sK~~~~--G~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~ 267 (368)
......++.+..+.++||++++ |+++||++++ +++++.+.. .......+.+++.+.++.++++.+ +...++.
T Consensus 261 ~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~---~~~~~g~~~~~~~~~a~~~al~~~--~~r~~~~ 335 (464)
T 1ibj_A 261 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTM--ALRIEKQ 335 (464)
T ss_dssp TCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HHHHTTCBCCHHHHHHHHHHHTTH--HHHHHHH
T ss_pred cCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH---HHHhcCCCCCHHHHHHHHhchhhH--HHHHHHH
Confidence 1111113433334589999985 7899999887 477777652 122233456788888877776532 1122333
Q ss_pred HHHHHHHHHHHHHH----------HHhcCCce----EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCe
Q 017633 268 NKITGELTQGIIDA----------GKKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 333 (368)
Q Consensus 268 ~~~~~~l~~~l~~~----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 333 (368)
..+.+.+.+.+++. +.+.+... ...+.++++++.+. .......+.+.|...||
T Consensus 336 ~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-------------~~~~~~~~~~~L~~~gi 402 (464)
T 1ibj_A 336 QENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-------------SVALSKHLVETTKYFSI 402 (464)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-------------CHHHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-------------CHHHHHHHHHhcCcceE
Confidence 33333443433321 11111000 11234567777762 11123457777777788
Q ss_pred eecCCC---------------------------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 334 YFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 334 ~~~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.++.|+ ...+|++... +++++++++|++++++
T Consensus 403 ~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 403 AVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred eecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 877663 1123444444 8999999999999875
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=181.04 Aligned_cols=314 Identities=13% Similarity=0.045 Sum_probs=191.3
Q ss_pred eccC--CCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHH-hcCCceEEEE
Q 017633 5 IILF--PSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKF 81 (368)
Q Consensus 5 ~~~g--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~-~~~~~~vi~~ 81 (368)
++|+ ..+|++++++.+++... +..+.+...++++.++++++. +++++++||++|+..+++.+.. ..+++.|++.
T Consensus 4 i~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~~-~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~ 80 (375)
T 2fnu_A 4 FAYSEPCLDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFLGV-KHALVFNSATSALLTLYRNFSEFSADRNEIITT 80 (375)
T ss_dssp EESCCCCCCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEEC
T ss_pred cccCCCCCCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEEC
Confidence 4453 36789999999988753 234567788999999999863 3899999999999999986621 2457889999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
.++|++....... .|..+........ +. .|++++++.++ ++++++++.+. +|.+.+
T Consensus 81 ~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~-------------~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~--- 136 (375)
T 2fnu_A 81 PISFVATANMLLE-SGYTPVFAGIKND-GN-------------IDELALEKLIN---ERTKAIVSVDY---AGKSVE--- 136 (375)
T ss_dssp SSSCTHHHHHHHH-TTCEEEECCBCTT-SS-------------BCGGGSGGGCC---TTEEEEEEECG---GGCCCC---
T ss_pred CCccHhHHHHHHH-CCCEEEEeccCCC-CC-------------CCHHHHHhhcC---cCceEEEEeCC---cCCccC---
Confidence 9888876544333 3333322111111 11 17888888876 35776555443 677777
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeee-h-HHHHHHhcCCCC-cc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGP-MY 236 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~-~-~~~~~~~~~~~~-~~ 236 (368)
+++|.++|++||+++|+||+|+............++ ..++.|+| |.+++ ++|++++ + +++++.+..... ..
T Consensus 137 -l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T 2fnu_A 137 -VESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT--AEGGAVVTNDSELHEKMKLFRSHGM 212 (375)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHHHHTBTTE
T ss_pred -HHHHHHHHHHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc--cCceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999643110110011112 24566888 99965 4788766 3 666655432110 00
Q ss_pred ------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe------eccceE
Q 017633 237 ------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG------YISGMF 298 (368)
Q Consensus 237 ------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~ 298 (368)
.+.++..+++.++++...++.+ +.+.++.+++++++++.|++ .+...... ....++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2fnu_A 213 LKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKD----NPYFTPLHPLLKDKSSNHLY 286 (375)
T ss_dssp EESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----CSSEEESGGGCSSCCCCSCE
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc----CCCccccCCCCCCCcceEEE
Confidence 1122345666665554443222 22344455555555555444 32111111 112334
Q ss_pred EEEeecCCCcccchhcccccH-HHHHHHHHHHHcCeeecCCCC-------------------------Cccccc--cCCC
Q 017633 299 GFFFTEGPVYNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAHS 350 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~~~~~~~-------------------------~~~~~~--~~~~ 350 (368)
++.+.. ... +..++.+.|.++||.++.... ..+|++ ...+
T Consensus 287 ~~~~~~------------~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 287 PILMHQ------------KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp EEEECG------------GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred EEEeCc------------cccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 555421 111 357899999999999983211 124443 3459
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017633 351 SDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 351 ~~~i~~~~~~l~~~l~~ 367 (368)
++|+++++++|++++++
T Consensus 355 ~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=182.74 Aligned_cols=284 Identities=15% Similarity=0.105 Sum_probs=186.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhh---hhhcCCCccccCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 106 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 106 (368)
++++...+++++++++++.. ++++++||++|+..+++.+ ..+++.|++..+.|++..... +...|.
T Consensus 56 ~~~~~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-------- 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIEGAA-GSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI-------- 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 45678899999999998744 6777778999999998755 356789999999888754433 222222
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 186 (368)
++..++..|++++++.++ ++++++++++.++++|.+.+ +++|+++|++||+++|+||+|+.+
T Consensus 125 -----------~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 125 -----------EVDLIDTSDVEKVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp -----------EEEEECTTCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -----------EEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 234444458999999887 47899999998888898888 999999999999999999999754
Q ss_pred hcccCccccccCCCcchh--hhhhhcc-CCccc-eeeeehH-HHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC
Q 017633 187 RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 261 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~--s~sK~~~-~G~~i-G~v~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~ 261 (368)
..+. ..+..+|++ |+||+++ +|.|+ |++++++ ++++.+.. .......+.++..+.++...++.+ +
T Consensus 187 ~~~~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~ 256 (389)
T 3acz_A 187 CFLK-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF---YRKDAGSLMAPMDAFLCARGMKTL--P 256 (389)
T ss_dssp TTCC-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHcCccHH--H
Confidence 1111 122345655 8999999 46888 9999988 88877752 221122345777777776666533 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--h--cC-Cc-----e----EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 262 GTYEYLNKITGELTQGIIDAGK--K--AG-HA-----I----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 262 ~~~~~~~~~~~~l~~~l~~~~~--~--~~-~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
...++..++.+.+.+.+++... + ++ +. . ...+.++++.+.+. . ..+..+.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~-------------~---~~~~~~~ 320 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK-------------S---FEAAKKL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-------------S---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC-------------C---HHHHHHH
Confidence 2344555666666666665310 0 00 00 0 01234667777652 1 2455666
Q ss_pred HHHcCeeecCC--C-------CC-------------------ccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 328 MLEEGVYFAPS--Q-------FE-------------------AGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 328 l~~~Gi~~~~~--~-------~~-------------------~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
|.+.|+.+... | .+ ...+++....++++++++.|+++++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW 389 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 66778776552 1 00 012233444558888899998888653
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=191.52 Aligned_cols=305 Identities=13% Similarity=0.090 Sum_probs=184.2
Q ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhh
Q 017633 14 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 93 (368)
Q Consensus 14 v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 93 (368)
+++++.+.+... .+++.+...++++.++++++.. ++++++||++|++.+++.+. ..+++.|++..++|++.....
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~-~~~~~~~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~~- 95 (374)
T 3uwc_A 21 YLNDLREFIKTA--DFTLGAELEKFEKRFAALHNAP-HAIGVGTGTDALAMSFKMLN-IGAGDEVITCANTFIASVGAI- 95 (374)
T ss_dssp HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHHH-
T ss_pred HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHHH-
Confidence 666776666553 3346788999999999999643 78899999999999987652 346789999999888764443
Q ss_pred hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 94 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
...|..+...... ..+.. |++++++.++ +++++++ ++ +++|...+ +++|+++|++|
T Consensus 96 ~~~g~~~~~~~~~-~~~~~-------------d~~~l~~~~~---~~~~~v~--~~-n~~G~~~~----~~~i~~~~~~~ 151 (374)
T 3uwc_A 96 VQAGATPVLVDSE-NGYVI-------------DPEKIEAAIT---DKTKAIM--PV-HYTGNIAD----MPALAKIAKKH 151 (374)
T ss_dssp HHTTCEEEEECBC-TTSSB-------------CGGGTGGGCC---TTEEEEC--CB-CGGGCCCC----HHHHHHHHHHT
T ss_pred HHcCCEEEEEecC-CCCCc-------------CHHHHHHhCC---CCceEEE--Ee-CCcCCcCC----HHHHHHHHHHc
Confidence 3333333221111 11111 7888888886 3677766 33 45677776 99999999999
Q ss_pred CCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccC-Cccceeeeeh-HHHHHHhcC---CCC---c---ccc
Q 017633 174 GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AGP---M---YQA 238 (368)
Q Consensus 174 ~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~-G~~iG~v~~~-~~~~~~~~~---~~~---~---~~~ 238 (368)
|+++|+||+|+.+ ..+....++..+|++++| |++++ |. .|+++.+ +.+.+.+.. .+. + ..+
T Consensus 152 ~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
T 3uwc_A 152 NLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYG 227 (374)
T ss_dssp TCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCC
T ss_pred CCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCcccccc
Confidence 9999999999732 112223444445776555 99986 65 7887764 455544432 110 0 012
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecCCCcccchhcccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.++..+.+.++.+...++.+ +.+.++.+++.+++++.|.++......+.... ....+..+.+.
T Consensus 228 ~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 291 (374)
T 3uwc_A 228 INCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLR-------------- 291 (374)
T ss_dssp CBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEE--------------
T ss_pred ccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEE--------------
Confidence 23344566555544443322 22444455555555555444210010110000 11111122221
Q ss_pred cHHHHHHHHHHHHcCeeecCCCC-C--------------------------cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQF-E--------------------------AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~-~--------------------------~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++.+.|.++||.++++.. + .+++ ...++++|+++++++|++++++
T Consensus 292 ~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 292 VKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp ETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 11357899999999999988751 1 1122 3457999999999999999864
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=180.61 Aligned_cols=307 Identities=12% Similarity=0.029 Sum_probs=189.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
.++++++++.+.+... .|....+...++++.++++++. +++++++||++|++.+++.+. .++.|++..++|++..
T Consensus 30 ~p~~~~~a~~~~~~~~-~y~~~~~~~~~l~~~la~~~~~-~~v~~~~ggt~al~~~l~~l~---~gd~Vlv~~~~~~~~~ 104 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-WLSNGGPLVREFEERVAGLAGV-RHAVATCNATAGLQLLAHAAG---LTGEVIMPSMTFAATP 104 (424)
T ss_dssp CHHHHHHHHHHHHHHT-CCSSSCHHHHHHHHHHHHHHTS-SEEEEESCHHHHHHHHHHHHT---CCSEEEEESSSCTHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHcC---CCCEEEECCCccHHHH
Confidence 3568999998888753 2221147889999999999853 589999999999999998762 4589999999988765
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 169 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l 169 (368)
.. +...|..+.........+.. |++++++.++ ++++++++.+ ++|...+ +++|+++
T Consensus 105 ~~-~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~tG~~~~----l~~i~~l 160 (424)
T 2po3_A 105 HA-LRWIGLTPVFADIDPDTGNL-------------DPDQVAAAVT---PRTSAVVGVH---LWGRPCA----ADQLRKV 160 (424)
T ss_dssp HH-HHHTTCEEEEECBCTTTSSB-------------CHHHHGGGCC---TTEEEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HH-HHHcCCEEEEEecCCCcCCc-------------CHHHHHHhhC---cCCcEEEEEC---CCCCcCC----HHHHHHH
Confidence 43 33334433222111101111 7899988886 3677777643 3566555 9999999
Q ss_pred HHHhCCEEEEehhhh-ch-hcccCccccccCCCcch--hhhh--hhccCCccceeeeeh-HHHHHHhcCC---CC---c-
Q 017633 170 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLG--KIIGGGLPVGAYGGR-RDIMEMVAPA---GP---M- 235 (368)
Q Consensus 170 ~~~~~~~li~De~~~-~~-~~g~~~~~~~~~~~~di--~s~s--K~~~~G~~iG~v~~~-~~~~~~~~~~---~~---~- 235 (368)
|++||+++|+||+|+ ++ ..+.. ++..+|+ .||| |++++ +|+||++++ +++++.+... +. +
T Consensus 161 a~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~ 234 (424)
T 2po3_A 161 ADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGG 234 (424)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTC
T ss_pred HHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 999999999999997 56 33321 2212344 5677 55544 799999988 7777665421 10 0
Q ss_pred --cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-ecc-----ceEEEEeecCCC
Q 017633 236 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS-----GMFGFFFTEGPV 307 (368)
Q Consensus 236 --~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~ 307 (368)
..+.++..+++.+++++..++.+ +.+.++.+.+++.+.+.+.+.+...... ..+ .++++.+....
T Consensus 235 ~~~~g~~~~~~~~~aa~~l~~~~~~------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~- 307 (424)
T 2po3_A 235 SPAGGTNAKMSEAAAAMGLTSLDAF------PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEAT- 307 (424)
T ss_dssp CTTCCCBCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHH-
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCcc-
Confidence 01122344566666655444432 2344444444455555444332111111 111 23334442100
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC-Cc------------------------cccc--cCCCHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EA------------------------GFTS--LAHSSDDIQHTITA 360 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~------------------------~~~~--~~~~~~~i~~~~~~ 360 (368)
...+..++.+.|.++||.+++... +. ++++ ..++++|+++++++
T Consensus 308 ---------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~ 378 (424)
T 2po3_A 308 ---------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADL 378 (424)
T ss_dssp ---------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHH
T ss_pred ---------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHH
Confidence 011246788999999999987321 10 3333 66799999999999
Q ss_pred HHHHHhh
Q 017633 361 AEKVLRQ 367 (368)
Q Consensus 361 l~~~l~~ 367 (368)
|++++.+
T Consensus 379 L~~~~~~ 385 (424)
T 2po3_A 379 LRLCATR 385 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988753
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-24 Score=191.89 Aligned_cols=312 Identities=16% Similarity=0.056 Sum_probs=186.9
Q ss_pred eccCCCcHH----HHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 5 IILFPSYLQ----VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 5 ~~~g~~~~~----v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
+.+++++|. +++++.+.+... .+.+.+...++++.++++++. +++++++||++|++.+++.+ ...+++.|++
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~~-~~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~ 81 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCNV-NYCIGCGNGLDALHLILKGY-DIGFGDEVIV 81 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHTS-SEEEEESCHHHHHHHHHHHT-TCCTTCEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHc-CCCCcCEEEE
Confidence 445555554 555555555543 235678889999999999864 48899999999999999765 2346789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
...+|++.... +...|..+.........+.. |+++++++++ +++++++ + ++++|...+
T Consensus 82 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~l~---~~~~~v~--~-~n~~G~~~~-- 139 (373)
T 3frk_A 82 PSNTFIATALA-VSYTGAKPIFVEPDIRTYNI-------------DPSLIESAIT---EKTKAII--A-VHLYGQPAD-- 139 (373)
T ss_dssp ETTSCTHHHHH-HHHHSCEEEEECEETTTTEE-------------CGGGTGGGCC---TTEEEEE--E-ECCTTCCCC--
T ss_pred CCCCcHHHHHH-HHHcCCEEEEEeccccccCc-------------CHHHHHHhcC---CCCeEEE--E-ECCCcCccc--
Confidence 99888875444 33334433221111011111 7888888886 3677777 2 345677777
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh----hhccC-Cccceeeeeh-HHHHHHhc---C
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVA---P 231 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s----K~~~~-G~~iG~v~~~-~~~~~~~~---~ 231 (368)
+++|.++|++||++||+||+|+.. ..+....++..+|+.++| |++++ | +.|+++.+ +++.+.+. .
T Consensus 140 --l~~i~~l~~~~~~~li~D~a~~~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~ 213 (373)
T 3frk_A 140 --MDEIKRIAKKYNLKLIEDAAQAHG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSN 213 (373)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTCTT---CEETTEETTSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHB
T ss_pred --HHHHHHHHHHcCCEEEEECCcccC---CEECCEeccccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHh
Confidence 999999999999999999999632 112223445445776555 88876 5 47787775 45554443 1
Q ss_pred CCC------ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeec
Q 017633 232 AGP------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTE 304 (368)
Q Consensus 232 ~~~------~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (368)
.+. ...+.++..+.+.++.+...++.+ +.+.++.+++.+++++.|.++. ...+.... ....+..+.+.
T Consensus 214 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~- 288 (373)
T 3frk_A 214 YGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIR- 288 (373)
T ss_dssp TTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEE-
T ss_pred cCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEE-
Confidence 111 111234455777777665555433 2234444444444444443321 11110000 11111112211
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-C--------------------------cccc--ccCCCHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E--------------------------AGFT--SLAHSSDDIQ 355 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~--------------------------~~~~--~~~~~~~~i~ 355 (368)
..+..++.+.|.++||.++++.. + .+++ ...+|++|++
T Consensus 289 -------------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~ 355 (373)
T 3frk_A 289 -------------SEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIE 355 (373)
T ss_dssp -------------ESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred -------------eCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH
Confidence 11357899999999999986541 1 1232 3567999999
Q ss_pred HHHHHHHHHHh
Q 017633 356 HTITAAEKVLR 366 (368)
Q Consensus 356 ~~~~~l~~~l~ 366 (368)
++++.|++...
T Consensus 356 ~~~~~l~~~~~ 366 (373)
T 3frk_A 356 YVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHhh
Confidence 99999987653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=182.11 Aligned_cols=304 Identities=12% Similarity=0.002 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHcCC---CCCCCC--hhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGT---SFGAPC--LLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---~~~~~~--~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+.+.+.. .+.++. +...+++++++++++ +.+++++++||++|+..++..+. .. ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC-cEEEEc
Confidence 46688988888877632 112221 456788889999886 36789999999999999998662 23 556555
Q ss_pred CCCCCCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
..+++.... .....|..+..........+ |+++++ ++ +++++++++++++++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~--~~---~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKGF--------------YPADIT--VP---ADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCCC--------------CGGGCC--CC---TTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCCC--------------CHHHHh--cc---CCccEEEEEcCCCCcceeCC---
Confidence 555542221 22233433322222111111 677777 33 46788888787888899888
Q ss_pred HHHHHHHHHHHh-CCEEEEehhhhchhcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHhcCCC-----
Q 017633 162 FLNAIRRITKEN-GALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAG----- 233 (368)
Q Consensus 162 ~l~~i~~l~~~~-~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~----- 233 (368)
+++|.++|++| |+++|+|++|+... ...... . .|+ .++||+++++.++|++++++++++.+....
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~~--~~~~~~--~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPY--PKFDWT--K--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTS--SCCCTT--S--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccCC--cccChh--H--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCC
Confidence 99999999999 99999999996321 011111 1 344 467899985556788888888776654210
Q ss_pred -Ccc------------ccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhc-CCceEE----e
Q 017633 234 -PMY------------QAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKA-GHAICG----G 292 (368)
Q Consensus 234 -~~~------------~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~----~ 292 (368)
... .....+.+..++.++.++++.+.+++ ..++..++++++++.|++ . ++.... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~ 297 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES----SKVFSFGVEDAKL 297 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH----CSSEEESSSCGGG
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH----ccCceeccCChhh
Confidence 000 00134567777777778887665433 344444555555555544 4 221111 1
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC----CCccccc--cCCCHHHHHHHHHHHHHHH
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~--~~~~~~~i~~~~~~l~~~l 365 (368)
..+.++++.+. . +..++.+.|.++||.+.++. ...+|++ ...+++++++++++|++++
T Consensus 298 ~~~~~~~~~~~-------------~--~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTT-------------M--LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEES-------------S--CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecC-------------C--CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 22445566552 2 35789999999999999763 2235553 4569999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=181.18 Aligned_cols=321 Identities=13% Similarity=0.042 Sum_probs=185.9
Q ss_pred CCcHHHHHHHHHHHHcCCCCC---CC-----ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH-h-----c
Q 017633 9 PSYLQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-----T 73 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~---~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~-~-----~ 73 (368)
+.+|++++++.+++.....+. ++ .+...+++++++++++ +++++++++||++|++.+++.+.. + .
T Consensus 29 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~ 108 (432)
T 3a9z_A 29 PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTL 108 (432)
T ss_dssp CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhcccc
Confidence 568999999999887632221 11 1235799999999987 567999999999999999977631 1 3
Q ss_pred CCceEEEEcCCCCCCch---------------hhh-hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC
Q 017633 74 GRERIIKFEGCYHGHAD---------------PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 137 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~ 137 (368)
+++.|++..++|++... ..+ ...|..+.........+. .|+++|++.++
T Consensus 109 ~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~-------------~d~~~l~~~i~-- 173 (432)
T 3a9z_A 109 QGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ-------------VEVEDILAAVR-- 173 (432)
T ss_dssp C------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS-------------CCHHHHHHTCC--
T ss_pred CCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC-------------cCHHHHHHhcc--
Confidence 56889999999987521 011 112332222211110111 17999998887
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEehhhhchhcccCccccccCCCcch--hh
Q 017633 138 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TT 205 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~----------~~li~De~~~~~~~g~~~~~~~~~~~~di--~s 205 (368)
++++++++++.++++|.+.+ +++|.++|++|| +++|+||+|.... .......+ .+|+ .|
T Consensus 174 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~--~~~~~~~~--~~d~~~~s 244 (432)
T 3a9z_A 174 -PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK--RRVDVEDL--GVDFLTIV 244 (432)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT--SCCCHHHH--CCSEEEEE
T ss_pred -CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC--cccChhhc--CCCEEEEe
Confidence 46888888888888999888 899999999999 9999999995321 11122222 3454 47
Q ss_pred hhhhccCCccceeeeehHHH-HHHhcCCC----CccccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHH
Q 017633 206 LGKIIGGGLPVGAYGGRRDI-MEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 278 (368)
Q Consensus 206 ~sK~~~~G~~iG~v~~~~~~-~~~~~~~~----~~~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l 278 (368)
+||.+| +|+||++++++. ...+.... ......+++.+..+++++.++++.+.+ +.+.++++++++++.+.|
T Consensus 245 ~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L 322 (432)
T 3a9z_A 245 GHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERL 322 (432)
T ss_dssp GGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 799874 579999998764 22232100 001223346788888888888886643 345566667777777777
Q ss_pred HHHH-HhcCCce---EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH----HcCeeecCC------------
Q 017633 279 IDAG-KKAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML----EEGVYFAPS------------ 338 (368)
Q Consensus 279 ~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gi~~~~~------------ 338 (368)
+++. ....... .....+.++++.+.... .+..++.+.+. +.|+.+.++
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~ 390 (432)
T 3a9z_A 323 EAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ------------LRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSC 390 (432)
T ss_dssp HHHHGGGEEESSCCTTCCBCTTEEEEEECSTT------------CCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHT
T ss_pred HhccCCcEEEeCCCCcccCCCCEEEEEeCCCC------------CcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhc
Confidence 6642 1110000 00123345566653210 01234444331 223333221
Q ss_pred C------CCccccc--cCCCHHHHHHHHHHHHHHHhh
Q 017633 339 Q------FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 339 ~------~~~~~~~--~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+ ...+|++ ..++++|+++++++|++++++
T Consensus 391 g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 391 GIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp TCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 1234544 344899999999999998764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=181.81 Aligned_cols=317 Identities=16% Similarity=0.082 Sum_probs=184.3
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-------CCh---hHHHHH-HHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKKGTSFGA-------PCL---LENVLA-EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~-------~~~---~~~~l~-~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
.+|++++++.+++.+....++ ... ..++++ +++++.++-....++++||++|+..+++.+ ..++|.|
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~V 134 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHAL--MSPGERL 134 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHh--cCCCCEE
Confidence 489999999888764211111 112 224455 788888763333333889999999999876 3567899
Q ss_pred EEEcCCCCCCchhh--hhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEE-cccCCCC
Q 017633 79 IKFEGCYHGHADPF--LVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNS 153 (368)
Q Consensus 79 i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~-~~~~~~~ 153 (368)
++..++|+++.... ....+.......++. ..+. .|++++++++++. +++++++ .|+++++
T Consensus 135 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------~d~~~l~~~i~~~--~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 135 LGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHL-------------IDMDAVRATALEF--RPKVIIAGWSAYPRV 199 (447)
T ss_dssp EEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCS-------------CCHHHHHHHHHHH--CCSEEEEECSSCCSC
T ss_pred EecCcccccccchhhhhhhcCCeeEEEEcCcCcccCC-------------cCHHHHHHHHHhc--CCeEEEEcCCCCCCc
Confidence 99998887743211 112222111111110 1111 1899999999743 3456655 5555443
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
+ + +++|+++|++||++||+||+| .++ ..+..... ..+.+.-+.|+||+++ |+|.|++++++++++.+..
T Consensus 200 ~---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 200 L---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp C---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred c---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 2 4 999999999999999999997 655 44432111 1122222457899995 7899999998887776652
Q ss_pred CCCccccccCC-CCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHh-cCCceEE-eeccceEEEEeecC
Q 017633 232 AGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK-AGHAICG-GYISGMFGFFFTEG 305 (368)
Q Consensus 232 ~~~~~~~~t~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 305 (368)
. ....+.+ .+...++++.+++..+.+ +.+.+++.++++++++.|.+.... .++.... ...++++++++...
T Consensus 271 ~---~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (447)
T 3h7f_A 271 A---VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS 347 (447)
T ss_dssp H---HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS
T ss_pred h---cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCC
Confidence 1 1111222 233445555555554433 224566667777777776654111 1332111 12345666666421
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeec----CC--CCC----ccccc------cCCCHHHHHHHHHHHHHHHhh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS--QFE----AGFTS------LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~--~~~----~~~~~------~~~~~~~i~~~~~~l~~~l~~ 367 (368)
......+.+.|.++||.+. ++ ..+ .+|+. ..++++|++++++.|++++.+
T Consensus 348 ------------~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 348 ------------PLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp ------------SCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ------------CCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 1123556666777799998 43 111 12321 237899999999999998853
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-22 Score=179.77 Aligned_cols=217 Identities=14% Similarity=0.078 Sum_probs=153.7
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...++++.++++++.. +.++++||++|+..+++.+ ..+++.|++..+.|++..........
T Consensus 62 ~~~~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~------------ 126 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGGE-AGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIG------------ 126 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGG------------
T ss_pred CCChHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHH------------
Confidence 36788899999999998744 6677778999999999876 34678899999888875443321100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+.++..++..|++++++.++ ++++++++++.++++|.+.+ +++|+++|++||+++|+||+|..+..+
T Consensus 127 ----~~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 127 ----EFGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp ----GGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred ----HcCCEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1122334445558999999987 47899999988888898887 999999999999999999999754111
Q ss_pred cCccccccCCCcchhhhhhhcc-CCccc-eeeeehHHHHH-HhcCCCCcccc-ccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~-~G~~i-G~v~~~~~~~~-~~~~~~~~~~~-~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.. ..++.+..+.|+||.++ +|.|+ |+++++++.++ .+.. .... .+.+.+++.++++.++++.+ +...+
T Consensus 196 ~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ---GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT---HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH---HhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 11 12455555668999999 57887 88888877655 4542 2222 33467888888877777543 23455
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..++.+.+.+.|.+
T Consensus 268 ~~~~~~~~l~~~L~~ 282 (398)
T 1gc0_A 268 RHCANAQVLAEFLAR 282 (398)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 666677777766655
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=185.60 Aligned_cols=328 Identities=14% Similarity=0.015 Sum_probs=187.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCch
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 90 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 90 (368)
++.+++++. .....+.+.+...+|+++++++++ .+++++++||++|++.+++.+ ..++| ++..++||+.+.
T Consensus 57 ~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~al~~l--~~~gd--i~~~~~~~~~~~ 127 (456)
T 2ez2_A 57 SDKQWAGMM----MGDEAYAGSENFYHLERTVQELFG-FKHIVPTHQGRGAENLLSQLA--IKPGQ--YVAGNMYFTTTR 127 (456)
T ss_dssp CHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHHC-CSEEEEESSHHHHHHHHHHHH--CCTTC--EEEESSCCHHHH
T ss_pred CHHHHHHhh----cchhhcccChhHHHHHHHHHHHhC-CCcEEEeCCcHHHHHHHHHHh--CCCCC--EeccccccchhH
Confidence 345555553 322233456778899999999985 358999999999999999776 34455 777888877655
Q ss_pred hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC-CHHHHHHHHHcCC-CCeEEEEEcccCC-CCCcccCCHHHHHHHH
Q 017633 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIR 167 (368)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~l~~i~ 167 (368)
..+...|..+........... .......+. |+++|+++++... ..++++++++.++ ++|. ..+.+++++|+
T Consensus 128 ~~~~~~G~~~~~v~~~~~~~~-----~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~ 201 (456)
T 2ez2_A 128 YHQEKNGAVFVDIVRDEAHDA-----GLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQ-PVSMANMRAVR 201 (456)
T ss_dssp HHHHHTTCEEEECBCGGGGCT-----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB-CCCHHHHHHHH
T ss_pred HHHHHcCCEEEEecccccccc-----cccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCc-cCCHHHHHHHH
Confidence 555555554332221100000 000000011 8999999998531 2347777774444 6675 55666699999
Q ss_pred HHHHHhCCEEEEehhhhc----------h-hcccCcc--ccccCCCcchhhh--hhhccCCccceeeee-hHHHHHHhcC
Q 017633 168 RITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAP 231 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~----------~-~~g~~~~--~~~~~~~~di~s~--sK~~~~G~~iG~v~~-~~~~~~~~~~ 231 (368)
++|++||++||+||+|+. + +.+.... .+..+..+|++++ +|..++| ++||+++ ++++++.+..
T Consensus 202 ~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~ 280 (456)
T 2ez2_A 202 ELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKE 280 (456)
T ss_dssp HHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHH
Confidence 999999999999999964 3 2222110 0012233566544 4554445 6899988 6777766542
Q ss_pred CCCcccc-cc-CCCCHHHHHH-HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec--CC
Q 017633 232 AGPMYQA-GT-LSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE--GP 306 (368)
Q Consensus 232 ~~~~~~~-~t-~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 306 (368)
......+ .+ .+.+...+.+ +.+.++.+. +++.++..++.+++++.|++ .++....+..+.++++.+.. ..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~~~~~~~~~~~~~~~~ 355 (456)
T 2ez2_A 281 LVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKA----AGVPIVEPVGGHAVFLDARRFCEH 355 (456)
T ss_dssp HHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHH----TTCCBCSSCCSSEEEEEHHHHTTT
T ss_pred HHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhc----CCCccccCCCceEEEEEhHHhcCC
Confidence 1111010 11 1223333333 444444332 23555556666666666655 23322223345666766531 10
Q ss_pred CcccchhcccccHH-HHHHHHHH-HHcCeeecCCC-----------------CCccccccC---CCHHHHHHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTK-FARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSLA---HSSDDIQHTITAAEKV 364 (368)
Q Consensus 307 ~~~~~~~~~~~~~~-~~~~~~~l-~~~Gi~~~~~~-----------------~~~~~~~~~---~~~~~i~~~~~~l~~~ 364 (368)
.. .... ...+++.| .++||.+.+.+ ...+|+++. ++++++++++++|+++
T Consensus 356 ~~--------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 356 LT--------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp SC--------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CC--------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00 0111 34557777 57899864421 123455433 7999999999999998
Q ss_pred Hhh
Q 017633 365 LRQ 367 (368)
Q Consensus 365 l~~ 367 (368)
+.+
T Consensus 428 l~~ 430 (456)
T 2ez2_A 428 YQH 430 (456)
T ss_dssp HHT
T ss_pred Hhh
Confidence 754
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-22 Score=181.48 Aligned_cols=311 Identities=12% Similarity=0.077 Sum_probs=176.9
Q ss_pred CcHHHHHHHHHHHHcCCC-------CCC----CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 10 SYLQVLAALGETMKKGTS-------FGA----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~-------~~~----~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
.+|++++++.+++.+... ++. ........++++++.++ +.+.++ ++||++|+..+++.+ ..+++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~-~~sGs~a~~~a~~~~--~~~gd~ 118 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQ-PHSGSQANFAVYTAL--LQPGDT 118 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeE-ecCcHHHHHHHHHHh--cCCCCE
Confidence 689999999988854221 111 11223344467888776 444444 457899999998766 356788
Q ss_pred EEEEcCCCCCCchhhh--hhcCCCccccCCCC-CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFL--VKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
|++..+.|++...... ...+.......++. ..+ ..|+++++++++++ +++++++++.++ |
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~~--~ 181 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESG-------------KIDYDEMAKLAKEH--KPKMIIGGFSAY--S 181 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEECTTC-------------SCCHHHHHHHHHHH--CCSEEEECCTTC--C
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCCccC-------------CcCHHHHHHHHHhc--CCeEEEEecCcc--C
Confidence 8888777655321111 11111111100100 011 12899999999853 466777754222 3
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchh--hhhhhccCCccceeeeehH---HHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR---DIME 227 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~---~~~~ 227 (368)
...+ +++|+++|++||++||+||+| .++ +.+..... .. .+|++ |+||+++ |.+.|++++++ ++.+
T Consensus 182 ~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~ 253 (420)
T 3gbx_A 182 GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYK 253 (420)
T ss_dssp SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHH
T ss_pred CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHH
Confidence 3455 999999999999999999998 455 43332111 11 25665 5889997 55679998886 7776
Q ss_pred HhcCCCCccccccC-CCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEe
Q 017633 228 MVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFF 302 (368)
Q Consensus 228 ~~~~~~~~~~~~t~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (368)
.+.. .....+. +.+...++++..++....+ +.+.+++.++++++++.|.+ .++..... ..+.++++.+
T Consensus 254 ~~~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~~~~ 326 (420)
T 3gbx_A 254 KLNS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN----RGYKVVSGGTENHLFLLDL 326 (420)
T ss_dssp HHHH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH----TTCEEGGGSCSSSEEEEEC
T ss_pred Hhhh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh----cCCeeccCCCCCeEEEEEc
Confidence 6652 1111212 2334444444445443322 23455566666666666655 33321111 3455667765
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC------C----Ccccccc------CCCHHHHHHHHHHHHHHHh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F----EAGFTSL------AHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~----~~~~~~~------~~~~~~i~~~~~~l~~~l~ 366 (368)
.. .......+.+.|.++||.+.+.+ . ..+|+.. .++++++++++++|++++.
T Consensus 327 ~~------------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 327 VD------------KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp GG------------GTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CC------------CCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 32 11224677888888999998821 1 1134321 2568999999999999875
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 395 ~ 395 (420)
T 3gbx_A 395 N 395 (420)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=188.23 Aligned_cols=332 Identities=14% Similarity=0.007 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc----C--C-ceEEEEcCC
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT----G--R-ERIIKFEGC 84 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~----~--~-~~vi~~~~~ 84 (368)
|++++++.+++......+.+.....+|+++++++++ .+++++++||++|++.++++++... + + +.|++. .
T Consensus 53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~-~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~--~ 129 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFG-YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS--N 129 (467)
T ss_dssp SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHC-CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE--S
T ss_pred HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhC-cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec--c
Confidence 788899988876543334455677899999999985 4789999999999999998876531 3 1 566654 4
Q ss_pred CCCCchh-hhhhcCCCccccCCCCCCCCCCCCCCcccccCC-CCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHH
Q 017633 85 YHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+|+.+.. .....+......... ..+.. . ....... .|+++|+++++++. +++++++++++++++|....+.+
T Consensus 130 ~h~~t~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~ 204 (467)
T 2oqx_A 130 YFFDTTQGHSQINGCTVRNVYIK--EAFDT--G-VRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLA 204 (467)
T ss_dssp SCCHHHHHHHHHTTCEEEECBCT--TTTCT--T-SCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHH
T ss_pred cccccchhhhhccCcceeecccc--ccccC--C-CCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHH
Confidence 6654322 222222211100000 00000 0 0000001 18999999998531 36888888888777645666777
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhc----------h-hcccCccccccC----CCcc--hhhhhhhccCCccc-eeeeehH
Q 017633 162 FLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGAQEYFG----VTPD--LTTLGKIIGGGLPV-GAYGGRR 223 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~----------~-~~g~~~~~~~~~----~~~d--i~s~sK~~~~G~~i-G~v~~~~ 223 (368)
++++|+++|++||++||+|++|.. . ..|. ....+. ..+| +.++||+++. ++ |++++++
T Consensus 205 ~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~~s~sK~~g~--~~Gg~~~~~~ 280 (467)
T 2oqx_A 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETYKYADMLAMSAKKDAMV--PMGGLLCMKD 280 (467)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHGGGCSEEEEESSSTTCC--SSCEEEEECS
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhhccCCeEEEecccccCC--CCceEEEecC
Confidence 799999999999999999966632 1 1111 111111 1123 4578899863 33 5666664
Q ss_pred H----HHHHhcCCCCcc-ccccCCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccce
Q 017633 224 D----IMEMVAPAGPMY-QAGTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 297 (368)
Q Consensus 224 ~----~~~~~~~~~~~~-~~~t~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 297 (368)
+ .+..+....... ...+++. +..++++....++...+++..++..++++++++.|++. +.... +..+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~-~~~~~~ 355 (467)
T 2oqx_A 281 DSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI----GVVCQ-QAGGHA 355 (467)
T ss_dssp GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT----TCCEE-EECSSC
T ss_pred hhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC----CCeee-cCCceE
Confidence 4 333332100000 0011122 22222222222232212234566677777888877764 33333 445667
Q ss_pred EEEEeec--CCCcccchhcccccHHHHHHHHHH-HHcCeeecCCCC-----------------Ccccccc--C-CCHHHH
Q 017633 298 FGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF-----------------EAGFTSL--A-HSSDDI 354 (368)
Q Consensus 298 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~-----------------~~~~~~~--~-~~~~~i 354 (368)
+++.+.. .... .......++++.| .++||.+.+++. ..+|+++ . ++++++
T Consensus 356 ~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 356 AFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp EEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHH
T ss_pred EEEechhhcccCC-------cccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHH
Confidence 7776531 0000 0110146778888 889999987431 3345544 4 899999
Q ss_pred HHHHHHHHHHHhh
Q 017633 355 QHTITAAEKVLRQ 367 (368)
Q Consensus 355 ~~~~~~l~~~l~~ 367 (368)
++++++|++++++
T Consensus 429 ~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 429 DFIIEAFKHVKEN 441 (467)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998854
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=183.75 Aligned_cols=287 Identities=15% Similarity=0.108 Sum_probs=185.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|++.++++.+.. .+++++||++|+..++.+ ..+++.|++..+.|++.........
T Consensus 64 ~~~p~~~~l~~~la~l~g~~-~~~~~~sG~~Ai~~~~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 126 (400)
T 3nmy_A 64 THNPTRFAYERCVAALEGGT-RAFAFASGMAATSTVMEL---LDAGSHVVAMDDLYGGTFRLFERVR------------- 126 (400)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTH-------------
T ss_pred CCCHHHHHHHHHHHHHhCCC-CEEEecCHHHHHHHHHHH---cCCCCEEEEeCCCchHHHHHHHHhh-------------
Confidence 45678899999999988643 677788899999985432 3567899999988886544332210
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++ ++++++++++++|++|.+.+ +++|+++|++||++||+||+|......
T Consensus 127 --~~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~~~~ 197 (400)
T 3nmy_A 127 --RRTAGLDFSFVDLTDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASPMLQ 197 (400)
T ss_dssp --HHHHCCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHHHHC
T ss_pred --HhhcCeEEEEECCCCHHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 000122345555668999999997 47899999999988998888 999999999999999999999632111
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccccee--ee-ehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--YG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~iG~--v~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
....++.++.+.|+||.++| |.++|+ ++ .++++++.+.. .....+.+.+++.++.++..++.+ +...+
T Consensus 198 ---~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~~r~~ 269 (400)
T 3nmy_A 198 ---RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--PLRMR 269 (400)
T ss_dssp ---CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ---ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--HHHHH
Confidence 11224555566789999995 566655 33 46777777652 223345567888887777666544 22344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEE------------------eeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
+..++++.+.+.|++ .+....+ .+.|.++++++.. +......+.+.
T Consensus 270 ~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~------------~~~~~~~~~~~ 333 (400)
T 3nmy_A 270 AHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG------------GFDAAKRFCEK 333 (400)
T ss_dssp HHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC------------cHHHHHHHHHc
Confidence 555566655555543 3332222 4567888988732 11234556665
Q ss_pred HHHcCeeecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHh
Q 017633 328 MLEEGVYFAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 328 l~~~Gi~~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
|.--++.++.|+... ..+++....|+.+.+++.|+++++
T Consensus 334 l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 334 TELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp CSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 544344444443211 012334455677777888888764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=177.07 Aligned_cols=275 Identities=12% Similarity=0.003 Sum_probs=178.4
Q ss_pred HHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh---hcCCCccccCCCCCCCCCC
Q 017633 37 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPK 113 (368)
Q Consensus 37 ~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 113 (368)
++++.++++++.. +.++++||++|+..+++.+ ..+++.|++..+.|++....... ..|.
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--------------- 63 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV--------------- 63 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC---------------
T ss_pred hHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC---------------
Confidence 5777888887644 5566667899999999865 34678899999988875433321 1222
Q ss_pred CCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEehhhhchhcccCc
Q 017633 114 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGG 192 (368)
Q Consensus 114 ~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~-~~~~li~De~~~~~~~g~~~ 192 (368)
++..++..|++++++.++ ++++++++++.++++|.+.+ +++|.++|++ ||+++|+||+|+......
T Consensus 64 ----~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~-- 130 (331)
T 1pff_A 64 ----EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTN-- 130 (331)
T ss_dssp ----EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCC--
T ss_pred ----EEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCC--
Confidence 223333347889988886 46888888888888898887 9999999999 999999999996441111
Q ss_pred cccccCCCcchhhhhhhcc-CCcc-ceeeeehH-HHHHHhcCCCCcccc-ccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 193 AQEYFGVTPDLTTLGKIIG-GGLP-VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 193 ~~~~~~~~~di~s~sK~~~-~G~~-iG~v~~~~-~~~~~~~~~~~~~~~-~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
.. .++.+..+.|+||+++ +|.| +|++++++ ++++.+.... .. .+.+.+++++.++..+++.+ +...+...
T Consensus 131 ~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 204 (331)
T 1pff_A 131 PL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGI---KDITGAIISPHDAWLITRGTLTL--DMRVKRAA 204 (331)
T ss_dssp GG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCC---CCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred hh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHH---HhhcCCCCCHHHHHHHHcCcchH--HHHHHHHH
Confidence 11 2444445568999999 5788 78999987 8888877422 22 34467888887776676644 22234455
Q ss_pred HHHHHHHHHHHHHHH----------hcCCce----EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCee
Q 017633 269 KITGELTQGIIDAGK----------KAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 334 (368)
Q Consensus 269 ~~~~~l~~~l~~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 334 (368)
.+.+.+.+.+++... ..+... ...+.++++.+.+. ...++.+.|.++||.
T Consensus 205 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----------------GLEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----------------SHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----------------CHHHHHHHHHhCCCc
Confidence 555555555544210 000000 01124556666542 135677888889997
Q ss_pred ecCC---C---------------------------CCcccc--ccCCCHHHHHHHHHHHHHH
Q 017633 335 FAPS---Q---------------------------FEAGFT--SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 335 ~~~~---~---------------------------~~~~~~--~~~~~~~~i~~~~~~l~~~ 364 (368)
+++. + ...+|+ ....++++++++++.|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 6432 1 122333 4556788888888887754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-21 Score=174.10 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=128.8
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
..+++.+|+..+++.+ ......|+ ...+...+++++++++++. +++++++||++|+..+++.+ ..+++.|++..+
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~-~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGA-LEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 3567777665555443 12222222 2346789999999999863 48999999999999999765 356789999998
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.|++......... ...+.+++.++. |+++++++++ ++++++++++.++++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~----------------~~~g~~~~~~~~-~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVL----------------SLMGVTVRYVDP-EPEAVREALS---AKTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTT----------------TTTTCEEEEECS-SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHH----------------HHcCCEEEEECC-CHHHHHHHhc---cCCeEEEEeCCCCCCccccc----H
Confidence 8875433221100 011223444444 4899999887 47899999988888898887 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhcc-CCccceeeeeh
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIG-GGLPVGAYGGR 222 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~-~G~~iG~v~~~ 222 (368)
++|+++|++||+++|+||+|+.+. . ........+|+ .|+||.++ +|.|+|++++.
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~--~--~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~ 217 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAG--A--LCRPLAWGAHVVVESLTKWASGHGSVLGGAVLS 217 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTT--T--SCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCcccc--c--cCCccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 999999999999999999997431 1 11112223454 46899998 57899998653
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=177.57 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=185.0
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
+++...+++++++++++.. ..++++||++|+..+++.+ ..+++.||+..+.|++.... +...
T Consensus 112 ~~~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~-~~~~-------------- 173 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGAE-STLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIF-IETI-------------- 173 (445)
T ss_dssp CCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHH-HHHT--------------
T ss_pred CChHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHH-HHHH--------------
Confidence 4677889999999998754 5556667999999999755 24678999998888764322 1100
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++. ++ +++++++.+|++|.+.+ +++|+++|++||++||+||+|+..
T Consensus 174 -~~~~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~--- 242 (445)
T 1qgn_A 174 -LPKMGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP--- 242 (445)
T ss_dssp -GGGGTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT---
T ss_pred -HHHcCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 0112334555666689999999984 56 89999998888898888 999999999999999999999632
Q ss_pred cCccccccCCCcchh--hhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di~--s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.. .......+|++ |++|.++| | .++|++++++++++.+... ........+++.++.+..+++.+ ....+
T Consensus 243 ~~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~---~~~~g~~~~~~~a~~~~~~l~~l--~~r~~ 315 (445)
T 1qgn_A 243 LN--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL---HHILGGALNPNAAYLIIRGMKTL--HLRVQ 315 (445)
T ss_dssp TT--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHGGGH--HHHHH
T ss_pred cc--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH---HHHhCCCCCHHHHHHHHHhHHHH--HHHHH
Confidence 11 11233445654 68999985 3 4799999998888777521 11122234666666665555533 22234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceE--E----------------eeccceEEEEeecCCCcccchhcccccHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDAGKKAGHAIC--G----------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (368)
+..++++++++.|++. +.... . .+.++++++.+.. .......+.+.
T Consensus 316 ~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~------------~~~~~~~~l~~ 379 (445)
T 1qgn_A 316 QQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG------------DLLTTAKFVDA 379 (445)
T ss_dssp HHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC------------CHHHHHHHHHh
Confidence 4555566666666553 21101 1 2357788887732 11234566666
Q ss_pred HHHcCeeecCCCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 328 MLEEGVYFAPSQFEA-------------------------GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 328 l~~~Gi~~~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
|...++.++.|+... ..+++....||++.+++.|+++++++
T Consensus 380 l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 380 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 445 (445)
T ss_dssp CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 654455555443210 11233444679999999999998753
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-20 Score=172.86 Aligned_cols=329 Identities=15% Similarity=0.062 Sum_probs=186.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----ChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHHHHh----------
Q 017633 10 SYLQVLAALGETMKKGTSFGAP-----CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF---------- 72 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~~~~---------- 72 (368)
.++.+.+++.....+...+.+. .+.+.+++++++++++ + .+.+++++|||+|+..++..++..
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~ 191 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSI 191 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccch
Confidence 4567777776655543222111 2455667777999987 3 379999999999999999876421
Q ss_pred --cC-----CceEEEEcCCCCCCchhhhhhcCCC---ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---C
Q 017633 73 --TG-----RERIIKFEGCYHGHADPFLVKAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 139 (368)
Q Consensus 73 --~~-----~~~vi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~ 139 (368)
.+ ++.+++.+...|.+...+....+.+ +...+... .+.. |+++|++++++.. .
T Consensus 192 ~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~-~~~~-------------d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 192 QKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA-DGTM-------------DITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT-TSSB-------------CGGGHHHHHHHHHHTTC
T ss_pred hhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC-CCcC-------------CHHHHHHHHHHHHHCCC
Confidence 11 3424444445555555444444432 22111110 1111 7899999987421 1
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCcc
Q 017633 140 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLP 215 (368)
Q Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~ 215 (368)
++.++++...++++|.+.+ +++|+++|++||+++++|++|.++ .... +.....++ .+|+++ ++|+++++++
T Consensus 258 ~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~ 332 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTIS 332 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred cceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcc
Confidence 2446666655666787777 999999999999999999999876 3322 22112233 457654 5899997789
Q ss_pred ceeeeehH-HHHHHhcCCCCcccc-ccCCCCHHH----------HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHH
Q 017633 216 VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLA----------MTAGIHTLKRLKEP---GTYEYLNKITGELTQGIID 280 (368)
Q Consensus 216 iG~v~~~~-~~~~~~~~~~~~~~~-~t~~~~~~~----------~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~ 280 (368)
+|++++++ ..++.+.....+... .+...+... .....++++.+..+ .+.++..++++++++.|++
T Consensus 333 ~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 412 (497)
T 2qma_A 333 CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT 412 (497)
T ss_dssp CEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998754 434444321111111 100111111 11233445544332 2344555555555555544
Q ss_pred HHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC----CCCcccc---ccCCCHHH
Q 017633 281 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFT---SLAHSSDD 353 (368)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~~~~~---~~~~~~~~ 353 (368)
. .++........+++++.+..... .......++.+.|.++|+.+.+. +...+|+ +..++++|
T Consensus 413 ~---~~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~ed 481 (497)
T 2qma_A 413 N---DQFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSD 481 (497)
T ss_dssp C---TTEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred C---CCeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence 2 12211112345566776642110 00112356788899999988753 2233454 45789999
Q ss_pred HHHHHHHHHHHHhhC
Q 017633 354 IQHTITAAEKVLRQI 368 (368)
Q Consensus 354 i~~~~~~l~~~l~~~ 368 (368)
++++++.|+++++++
T Consensus 482 i~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 482 FESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=173.87 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=144.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++.+...++++.++++++.. +.++++||++|++.+++ . ..+++.|++..+.|++.... +..
T Consensus 52 ~~~~~~~~lr~~la~~~g~~-~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~-~~~-------------- 112 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENAQ-YGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRY-FTK-------------- 112 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHH-HHH--------------
T ss_pred CCChhHHHHHHHHHHHhCCC-cEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHH-HHH--------------
Confidence 35577889999999999744 56666789999999998 4 34678999998888764221 110
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEehhhhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTG 185 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~----~~~li~De~~~~ 185 (368)
.....+.++..++.+| ++++++++ ++++++++++.+|++|.+.+ +++|+++|++| |+++|+||+|+.
T Consensus 113 -~~~~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 113 -VANAHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp -TSTTTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred -HHHHcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 0111233455566557 88888886 47899999998888999888 99999999999 999999999976
Q ss_pred h-hcccCccccccCCCcchhhhhhhcc-CCccc-eeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccC
Q 017633 186 F-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 261 (368)
Q Consensus 186 ~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~i-G~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~ 261 (368)
+ .. . ...++.+..+.|+||.++ +|+|+ |+++++ +++++.+... ......+.++..+.++..+++.+ .
T Consensus 184 ~~~~-~---~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~---~~~~g~~~~~~~~~~~~~~l~~~--~ 254 (393)
T 1n8p_A 184 PYIS-N---PLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL---QNAIGAIPSPFDAWLTHRGLKTL--H 254 (393)
T ss_dssp HHHC-C---GGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-C---HHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhccchH--H
Confidence 6 32 2 112343333448999999 47899 888884 7777776521 12122244666666665555433 1
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 017633 262 GTYEYLNKITGELTQGIID 280 (368)
Q Consensus 262 ~~~~~~~~~~~~l~~~l~~ 280 (368)
...++..++.+.+++.|.+
T Consensus 255 ~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2234455555555555544
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=180.40 Aligned_cols=214 Identities=14% Similarity=0.125 Sum_probs=146.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...++++.++++++..+.+ +++||++|+..+++ + ..+++.|++..+.|++........
T Consensus 64 ~~~p~~~~l~~~la~~~g~~~~i-~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~-------------- 125 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGAKYCL-AFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQV-------------- 125 (403)
T ss_dssp --CHHHHHHHHHHHHHHTCSEEE-EESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHT--------------
T ss_pred CCCchHHHHHHHHHHHhCCCcEE-EECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHH--------------
Confidence 45677899999999999754444 45578999999887 4 356789999999888753322111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEehhhhchhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~-~~li~De~~~~~~~ 188 (368)
....+.++..++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++|| +++|+||+|..+..
T Consensus 126 --~~~~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 126 --ASEFGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp --GGGGTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred --HHHcCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 011223455566668999999987 47899999888888898888 999999999999 99999999975411
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCH
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 263 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~ 263 (368)
... ++..+|+ .|+||.+++ | .++|++++ ++++++.+.. .....+...+++.+.++..+++.+ +..
T Consensus 197 ~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r 266 (403)
T 3cog_A 197 QRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVR 266 (403)
T ss_dssp CCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred CCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHH
Confidence 111 1233455 489999994 4 58999988 4777777652 222233456788888777766533 223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 264 YEYLNKITGELTQGIID 280 (368)
Q Consensus 264 ~~~~~~~~~~l~~~l~~ 280 (368)
.++..++.+.+.+.+++
T Consensus 267 ~~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455555555555544
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=172.10 Aligned_cols=303 Identities=14% Similarity=0.071 Sum_probs=188.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHH-----HhcCCceEEEEcCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 84 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~-----~~~~~~~vi~~~~~ 84 (368)
-+|++++++.+++... ++++.+...++++.++++++.. .+++++||++|+..+++.++ ...+++.|++..++
T Consensus 13 ~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFGSK-YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 5678999999988763 3345778899999999998643 67888899999999997652 13457889999999
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|++...... ..|..+.........+.. |++++++.++ ++++++++.+ ++|...+ ++
T Consensus 90 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~~ 145 (390)
T 3b8x_A 90 WSTTYYPLQ-QYGLRVKFVDIDINTLNI-------------DIESLKEAVT---DSTKAILTVN---LLGNPNN----FD 145 (390)
T ss_dssp CHHHHHHHH-HTTCEEEEECBCTTTCSB-------------CHHHHHHHCC---TTEEEEEEEC---GGGCCCC----HH
T ss_pred cHHHHHHHH-HcCCEEEEEecCccccCc-------------CHHHHHHHhC---cCCeEEEEEC---CccChhh----HH
Confidence 887655433 333332221111111111 8999999987 3677777653 2344455 99
Q ss_pred HHHHHHHHhCCEEEEehhhh-chhcccCccccccCCCcchhhhhhhcc----CCccceeeeehH-HHHHHh---cCCC--
Q 017633 165 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMV---APAG-- 233 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~-~~~~g~~~~~~~~~~~~di~s~sK~~~----~G~~iG~v~~~~-~~~~~~---~~~~-- 233 (368)
+|.++|++||+++|+||+|+ +.. .....++..+|+.++||..+ +| +.|++++++ ++.+.+ ...+
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~----~~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~ 220 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGAT----FNNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWT 220 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCE----ETTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBS
T ss_pred HHHHHHHHcCCEEEEECcCcccCE----ECCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 321 12234566677777775443 33 348887764 554433 2211
Q ss_pred -C-------------------c---cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 234 -P-------------------M---YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 234 -~-------------------~---~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
. + ..+.++..+++.++++++.++.++ ++.++.+++++++++.|++ .+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~----~~~~~~ 294 (390)
T 3b8x_A 221 RNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKD----HPYLDV 294 (390)
T ss_dssp TTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT----CSSEEE
T ss_pred ccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcC----CCCccc
Confidence 0 0 012233477888888877776552 3455556666666665544 221111
Q ss_pred Ee--eccce--EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC------C-Cc-----------------
Q 017633 291 GG--YISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F-EA----------------- 342 (368)
Q Consensus 291 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~-~~----------------- 342 (368)
.. ....+ +++.+... ...+..++.+.|.++||.+++.. . +.
T Consensus 295 ~~~~~~~~~~~~~i~~~~~-----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKD-----------SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY 363 (390)
T ss_dssp CCCCSBCCCCEEEEEECTT-----------SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH
T ss_pred CCCCCCcccEEEEEEecCc-----------CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH
Confidence 11 11222 33333210 01234788999999999998731 1 10
Q ss_pred -----ccc--ccCCCHHHHHHHHHHH
Q 017633 343 -----GFT--SLAHSSDDIQHTITAA 361 (368)
Q Consensus 343 -----~~~--~~~~~~~~i~~~~~~l 361 (368)
+++ ...++++|++++++.|
T Consensus 364 ~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 364 LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 122 3567999999999876
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-20 Score=168.90 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=128.7
Q ss_pred CcHHHHHHHHHHHHcCCC--CC---CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 10 SYLQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~--~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
-+|++++++.+++..... ++ ...+...++++.++++++-. ++++++||++|+..+++.+. ..+++.|++..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~-~~i~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP-YCVPTTSGSTALMLALEALG-IGEGDEVIVPSLT 91 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCc
Confidence 368999999998876421 21 11244889999999988633 57778889999999997652 2457889999998
Q ss_pred CCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 017633 85 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 164 (368)
|++...... ..|..+............ |++++++.++ ++++++++++ ++|...+ ++
T Consensus 92 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 92 WIATATAVL-NVNALPVFVDVEADTYCI-------------DPQLIKSAIT---DKTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp CTHHHHHHH-HTTCEEEEECBCTTTCSB-------------CHHHHGGGCC---TTEEEECCBC---CTTCCCC----HH
T ss_pred cHhHHHHHH-HcCCEEEEEecCCCCCCc-------------CHHHHHHhhC---CCCeEEEEeC---CcCCccc----HH
Confidence 887654433 333333221111101111 7999998886 3677777643 4566665 99
Q ss_pred HHHHHHHHhCCEEEEehhhhch-h-cccCccccccCCCcchhhh--hhhccCCccceeeeeh-HHHHHHhc
Q 017633 165 AIRRITKENGALLIFDEVMTGF-R-LAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVA 230 (368)
Q Consensus 165 ~i~~l~~~~~~~li~De~~~~~-~-~g~~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~-~~~~~~~~ 230 (368)
+|.++|++||++||+||+|+.+ . .+.. ...++ ..++.|| ||.+++| ++||++++ +++++.+.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~ 214 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQR--AGTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQ 214 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEE--TTSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEe--ccccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHH
Confidence 9999999999999999999754 2 1111 11111 2455677 8999987 99999884 67665543
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-22 Score=182.15 Aligned_cols=287 Identities=10% Similarity=-0.006 Sum_probs=173.9
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
+.....++++++++ ++..+.+++++|+++|+..+++.+ ..+++.|++..++|+..... +...|.............
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~~-~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLHA-LDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHHH-HHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHHH-HHHcCCeEEEEeCeeccc
Confidence 45677899999999 874478999999999999999876 34678898888777665443 344444332211100100
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch--hc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RL 188 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~--~~ 188 (368)
. + -...+ |++++ +. ++++++++.+ .+++|.+.+ +++|+++|++||+++|+||+|.+. ..
T Consensus 131 ~----~-~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T----N-HYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T----S-SEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c----C-cCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 0 00011 45555 22 3566666666 444788887 999999999999999999999752 22
Q ss_pred ccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHH--HhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC--
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-- 262 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~--~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~-- 262 (368)
+.......++ +|+ .|++|.++++.++|++++++++++ .+.. ......+.+.+...++++.++++.+...+
T Consensus 192 ~~~~~~~~~g--~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 192 GFPDSTLNYQ--ADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TSCCCGGGGT--CSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCCChHHcC--CCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2222222233 455 467799887778999988776543 2221 01122344567777767667777765432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC
Q 017633 263 -TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 341 (368)
Q Consensus 263 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~ 341 (368)
+.++..++.++++++ ++..........+++.+. .....++++.|.++||.+...+..
T Consensus 268 ~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~--------------~~~~~~l~~~L~~~GI~v~~~g~~ 325 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYE--------------GFTGHDIQNWFMNAHIYLELADDY 325 (446)
T ss_dssp HHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECT--------------TSCHHHHHHHHHHTTEEESEECSS
T ss_pred HHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeC--------------CcCHHHHHHHHHHCCCEEEecCCC
Confidence 444454444444444 222111112234555542 112467899999999999833334
Q ss_pred cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 342 AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 342 ~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+++ +...+++++ +++++|++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 5554 444688999 999999998754
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=177.59 Aligned_cols=272 Identities=10% Similarity=0.028 Sum_probs=167.2
Q ss_pred HHHHHHHHhhCC------CC-CeEEEeCChHHHHHHHHHHHHHhcCCc----eEEEEcCCCCCCchhhhhhcCCCccccC
Q 017633 36 NVLAEMVISAVP------SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 104 (368)
Q Consensus 36 ~~l~~~l~~~~~------~~-~~v~~~~~gt~a~~~al~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (368)
.+|++.++++++ .. +++++|+|+++++..+++.+. .++| .|++..++|...... ....|..+.
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~--~~Gd~~~~~Vlv~~P~y~~~~~~-~~~~g~~~~--- 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS--SLARSQPVSVVAAAPFYSTYVEE-TTYVRSGMY--- 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH--HTSSSSSEEEEECSSCCTHHHHH-HHTTCBTTE---
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc--CCCCCCcceEEEcCCCchhHHHH-HHHcCCeEE---
Confidence 788888888764 24 699999999999999997763 3567 899988888764333 233333221
Q ss_pred CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEehh
Q 017633 105 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 182 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~--~~li~De~ 182 (368)
.++. |.++++ . ++++++++...+|++|.+.+ +|++ ++|+ +++|+||+
T Consensus 145 ----------------~~~~-d~~~l~---~---~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 145 ----------------KWEG-DAWGFD---K---KGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ----------------EEEE-ESTTCC---C---CSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECT
T ss_pred ----------------EecC-CHHHcC---C---CCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCC
Confidence 1111 112222 1 35666655444555666664 2333 2255 99999999
Q ss_pred hhchhcccCcccc-ccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHc
Q 017633 183 MTGFRLAYGGAQE-YFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 259 (368)
Q Consensus 183 ~~~~~~g~~~~~~-~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~ 259 (368)
|.+ +...... ..+....+.||||.++ +|+|+||+++ ++++++.+.. .....+++.+.+++.++.++++...
T Consensus 194 y~~---~~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~ 267 (391)
T 3bwn_A 194 YYW---PHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLK 267 (391)
T ss_dssp TCS---TTTSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CCC---CCCCccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcc
Confidence 962 1111111 2334445679999998 8999999987 8888887763 2233356789999999888887542
Q ss_pred --------cCCHHHHHHHHHHHHHHHHHHHHHhcCCceE--------------EeeccceEEEEeecCCCcccchhcccc
Q 017633 260 --------EPGTYEYLNKITGELTQGIIDAGKKAGHAIC--------------GGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 260 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+.+.++.++..+..++.+.+.+.+.+.... .+..|.++|+.+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~------------- 334 (391)
T 3bwn_A 268 ETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE------------- 334 (391)
T ss_dssp HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-------------
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-------------
Confidence 1344444444444444444444444321100 11233466776631
Q ss_pred cHHHHHHHHHHHHcCeeecCCCC-----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
...+...|.++||.+.++.. ..+|+++..+++++++++++|+++++
T Consensus 335 ---~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 335 ---ETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKL 385 (391)
T ss_dssp ---SCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred ---HHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 13456677789999998742 34677777899999999999988764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=168.04 Aligned_cols=315 Identities=11% Similarity=0.048 Sum_probs=190.4
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHH-HhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|++++++.+.+.... ++...+...++++.+ +++++..+++++++||++|+..++..+ ...++|.||+...+|...
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 45678999999887743 221246678999999 999873567888999999999999765 235678999998888765
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
... ....|..+.........+.. |++++++++....+++++++. + +++|...+ +++|.+
T Consensus 92 ~~~-~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~~~~~~tk~v~~--~-~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 PLA-AIWCGLEPYFIDISIDDWYM-------------DKTVLWDKIEELKEEVAIVVP--Y-ATFGSWMN----LEEYEE 150 (377)
T ss_dssp HHH-HHHTTCEEEEECBCTTTCSB-------------CHHHHHHHHHHHGGGEEEECC--B-CGGGBCCC----CHHHHH
T ss_pred HHH-HHHcCCEEEEEecCCccCCc-------------CHHHHHHHHhcCCCCceEEEE--E-CCCCCccC----HHHHHH
Confidence 433 33334433222111111111 899999988321012777763 3 33566666 899999
Q ss_pred HHHHhCCEEEEehhhhchhcccCcccccc-CC--Ccchhhh--hhhccCCccceeeee-hHHHHHHhcC---CCC-----
Q 017633 169 ITKENGALLIFDEVMTGFRLAYGGAQEYF-GV--TPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP----- 234 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~~~~~~~-~~--~~di~s~--sK~~~~G~~iG~v~~-~~~~~~~~~~---~~~----- 234 (368)
+|+ ||++||+|++|+. |..+..... +. ..++.|| +|.+++| ..|+++. ++++.+.++. .+.
T Consensus 151 la~-~~~~vi~D~a~a~---g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 225 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGF---GLMNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRE 225 (377)
T ss_dssp HHH-TTCCBEEECTTCT---TCEETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSC
T ss_pred HHh-cCCEEEEECCCcc---CCeECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 999 9999999999962 111111122 11 2234454 3999865 5677765 5666555432 111
Q ss_pred -ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCceEEee-cc-ceEEEEeecCCCccc
Q 017633 235 -MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGY-IS-GMFGFFFTEGPVYNF 310 (368)
Q Consensus 235 -~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 310 (368)
...+..+..+.+.++.++..++.+ +.+.++.+++.+++.+.|.+...- ......... .. .++.+.+.
T Consensus 226 ~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 296 (377)
T 3ju7_A 226 CTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP------- 296 (377)
T ss_dssp BCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-------
T ss_pred eeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-------
Confidence 011334567788888777777644 345667777777777777664210 111111000 11 12222221
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCC-Cc------------------------ccc--ccCCCHHHHHHHHHHHHH
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQF-EA------------------------GFT--SLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~------------------------~~~--~~~~~~~~i~~~~~~l~~ 363 (368)
+..+..++.+.|.++||.++.... +. +++ ...++++|++++++.|++
T Consensus 297 ------~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 297 ------EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp ------TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred ------ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 111257899999999999987642 11 022 246699999999999988
Q ss_pred HHhh
Q 017633 364 VLRQ 367 (368)
Q Consensus 364 ~l~~ 367 (368)
++.+
T Consensus 371 ~~~~ 374 (377)
T 3ju7_A 371 KVVS 374 (377)
T ss_dssp ----
T ss_pred HHhc
Confidence 7753
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=170.23 Aligned_cols=310 Identities=12% Similarity=0.003 Sum_probs=185.8
Q ss_pred CcHHHHHHHHHHHHcC---------CCCCCC--ChhHHHHHHHHHhhCC-CCC-e-EEEeCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKG---------TSFGAP--CLLENVLAEMVISAVP-SIE-M-VRFVNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~---------~~~~~~--~~~~~~l~~~l~~~~~-~~~-~-v~~~~~gt~a~~~al~~~~~~~~~ 75 (368)
.+|++++++.+++.+. ..+.++ .+..++++++++++++ +.+ + +++|+||++++..++..+ ..++
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 6789999999887542 111222 2356789999999987 432 5 578899999999999766 3467
Q ss_pred ceEEEEcCCCCCCch-hhhhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 76 ERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
|+|++...++++... ......| .+....... ..+.. .|.++++ ++ ++++++++.+++++
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~------------~~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTL------------PKLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSC------------CCGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccC------------CCHHHcc--cC---CCcCEEEEeCCcCc
Confidence 888887665555321 2233334 433222210 01110 0344332 33 46887777777777
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcC
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~ 231 (368)
+|....+ +++| ||+++|+||+|+... ....... .+.-+.++||+++ .| +||+++++++++.+..
T Consensus 155 tG~~~~~---l~~i------~~~~vivD~a~~~~~--~~~~~~~--~d~~~~s~~K~~g~~G--~G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 155 EGAQFKA---FPDT------GSVPLIGDMSSDILS--RPFDLNQ--FGLVYAGAQKNLGPSG--VTVVIVREDLVAESPK 219 (362)
T ss_dssp TTEECSS---CCCC------TTSCEEEECTTTTTS--SCCCGGG--CSEEEEETTTTTCCSS--CEEEEEEGGGSSSCCT
T ss_pred cceeccc---cccc------CCCEEEEEChhhccC--CccchhH--CcEEEEeccccccCcC--cEEEEEcHHHHhhccc
Confidence 7875332 5565 899999999996321 1111222 2222457899997 34 8999999887766653
Q ss_pred CCCccc---------cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-C-ceEE---eeccce
Q 017633 232 AGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-H-AICG---GYISGM 297 (368)
Q Consensus 232 ~~~~~~---------~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~-~~~~---~~~~~~ 297 (368)
..+... ...++.+..++.++.++++.+.+.+..+.+.++.+.+++.+.+.+.+.+ + .... .....+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 299 (362)
T 2c0r_A 220 HLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMN 299 (362)
T ss_dssp TSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSE
T ss_pred cCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcE
Confidence 211111 2234677888888888988765432233444444444444444444444 2 2110 112344
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccccc--CCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~~~--~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++.+ ++..+..++++.|.++||.+.++.. ..+|+++ ..+++|++++++.|++++++
T Consensus 300 ~~~~~-------------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 300 ITFRL-------------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp EEEEC-------------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEc-------------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 55544 1234567899999999998887632 2355544 35899999999999998764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=172.27 Aligned_cols=292 Identities=13% Similarity=0.065 Sum_probs=171.2
Q ss_pred hHHHHHHHHHhhCC-CCCeEEEeCChH-HHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCC--CCC
Q 017633 34 LENVLAEMVISAVP-SIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSP 109 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~~~~v~~~~~gt-~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 109 (368)
...+++++++++++ +.+ +++++||| .++..++..++...+++.||+... .|......+...|.++...... ...
T Consensus 134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~~~~~~~G~~~~~v~~~~~~~~ 211 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDGDR 211 (456)
T ss_dssp HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHcCCCceEEEEeccCCC
Confidence 45678899999987 444 99999999 566656655443335556666666 5554555555445443221110 011
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHH-HcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchh
Q 017633 110 GVPKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~ 187 (368)
+. .|+++|++++ +.. ..++.++++...++++|.+.+ +++|+++|++||+++++||+|.++.
T Consensus 212 ~~-------------~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 212 VY-------------VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp EE-------------CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred CC-------------cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH
Confidence 11 1899999999 420 125666655555566788877 9999999999999999999996541
Q ss_pred ccc-CccccccCCCcchh--hhhhhccCCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---
Q 017633 188 LAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--- 260 (368)
Q Consensus 188 ~g~-~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~--- 260 (368)
.|. ......+...+|++ +++|.+++++++|++++ ++++++.+.. .+.+.. +.++ ..++.+++..+..
T Consensus 275 ~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~-~~~~--~~~~~aal~~l~~~~~ 348 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRA-SATP--VVNTLVSLLSMGSKNY 348 (456)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCB-CSHH--HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCC-CCCH--HHHHHHHHHHHHHHHH
Confidence 111 11111121134554 56898888899999988 5777776642 122221 1121 2233334443322
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCe---eec-
Q 017633 261 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA- 336 (368)
Q Consensus 261 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~~~- 336 (368)
++..++..++++++++.|++.....+... .... +++++.+... .. ..++.+.|.++|+ .+.
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~-~~v~~~~~~~-----------~~--~~~l~~~L~~~gi~~~rv~~ 413 (456)
T 2z67_A 349 LELVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE-SPIASCISVN-----------SD--PVEIAAKLYNLRVTGPRGIK 413 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC-CSSEEEEECS-----------SC--HHHHHHHHHHTTEESCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCEe-cCCC-CeEEEEEecc-----------cH--HHHHHHHHHHcCCCcceEEe
Confidence 33456777777777777776532223221 1122 5556655211 11 3578888999885 332
Q ss_pred -----------CCCCCcccc--ccCCCHHHHHHHHHHHHHHH
Q 017633 337 -----------PSQFEAGFT--SLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 337 -----------~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l 365 (368)
......+++ ...++++|+++++++|++++
T Consensus 414 ~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 414 KTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 001122333 34579999999999998754
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=167.25 Aligned_cols=323 Identities=11% Similarity=-0.018 Sum_probs=185.9
Q ss_pred CcHHHHHHHHHHHHcCCC-CC-CC--ChhHHHHHHHHHhhCC-CCC-----eEEEeCChHHHHHHHHHHHHHh-------
Q 017633 10 SYLQVLAALGETMKKGTS-FG-AP--CLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 72 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~-~~-~~--~~~~~~l~~~l~~~~~-~~~-----~v~~~~~gt~a~~~al~~~~~~------- 72 (368)
.+|.+.+++.+++..... +. ++ .+.+.+++++++++++ +.+ .+++++|||+|+..++..++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888887764322 11 11 2456788888899887 433 4999999999999998766431
Q ss_pred cC----CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 73 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 73 ~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
++ +++|++.. .|......+...|..+...+.....+.. |+++|+++++ ++++++++..
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~~-------------d~~~l~~~i~---~~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLFM-------------DPKRMIEACD---ENTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCSC-------------CHHHHHHHCC---TTEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCeE-------------CHHHHHHHHh---hCCEEEEEEc
Confidence 22 24666644 6665555555555544332221101111 8999999997 3677777777
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEehhhhch-h--cccCccccccCCCcchhh--hhhhccCCccce
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLTT--LGKIIGGGLPVG 217 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~-~--~g~~~~~~~~~~~~di~s--~sK~~~~G~~iG 217 (368)
.++++|.+.+ +++|+++|++| |+++++|++|.++ . .......+.--...|.++ .+|.+.+|+++|
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G 271 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeE
Confidence 7677888877 99999999996 9999999999765 2 111111110011345544 459666889999
Q ss_pred eeeehH-HHH-HHhcCCCCccc----c--ccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 218 AYGGRR-DIM-EMVAPAGPMYQ----A--GTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 218 ~v~~~~-~~~-~~~~~~~~~~~----~--~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
++++++ .+. +.+.....+.. . ...+.+.....+..++++.+..++ +.++..++++++.+.|+ +.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~----~~~ 347 (452)
T 2dgk_A 272 WVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA----KLG 347 (452)
T ss_dssp EEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTS
T ss_pred EEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----hCC
Confidence 998854 332 44321111110 0 001111212333334444443322 33444445555544444 343
Q ss_pred -CceEEe----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC----C---CCcccc--ccCCCHH
Q 017633 287 -HAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q---FEAGFT--SLAHSSD 352 (368)
Q Consensus 287 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~---~~~~~~--~~~~~~~ 352 (368)
+....+ ...+++.+.+.... .......++.+.|.++|+.++.. . ...+|+ ....+++
T Consensus 348 ~~~~~~~~~~~~~~~~v~f~~~~~~---------~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e 418 (452)
T 2dgk_A 348 PYEFICTGRPDEGIPAVCFKLKDGE---------DPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD 418 (452)
T ss_dssp SEEEEEECCTTTBSSEEEEEECTTC---------CCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHH
T ss_pred CeEEecCCCCCCCeEEEEEEecCcc---------cccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHH
Confidence 222222 23455566553110 00012368999999999976532 1 113344 3445799
Q ss_pred HHHHHHHHHHHHHhh
Q 017633 353 DIQHTITAAEKVLRQ 367 (368)
Q Consensus 353 ~i~~~~~~l~~~l~~ 367 (368)
|++++++.|++++.+
T Consensus 419 ~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 419 FAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=173.59 Aligned_cols=312 Identities=10% Similarity=-0.034 Sum_probs=181.9
Q ss_pred CcHHHHHHHHHHHHcC-----CCCC----C--CChhHHHHHHHHHhhCC-C-CCeEEEeCCh-HHHHHHHHHHHHHhcC-
Q 017633 10 SYLQVLAALGETMKKG-----TSFG----A--PCLLENVLAEMVISAVP-S-IEMVRFVNSG-TEACMGVLRLARAFTG- 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-----~~~~----~--~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g-t~a~~~al~~~~~~~~- 74 (368)
.+|++++++.+.+.+. ..++ + ..+...+++++++++++ . .+++++++|+ ++|+..++..+....+
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~ 93 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI 93 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence 6788999998887542 0010 1 12356789999999987 3 4699999988 9999998865522111
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHH-HHHcCCCCeEEEEEcccCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++.|++...+++ . .......| .+.........+. .|++++++ +++ ++++++++++.++++
T Consensus 94 g~~vi~~~~~~~-~-~~~~~~~g-~~~~v~~~~~~~~-------------~d~~~l~~~~i~---~~~k~v~~~~~~npt 154 (360)
T 1w23_A 94 GNYVLTGSWSEK-A-LKEAKLLG-ETHIAASTKANSY-------------QSIPDFSEFQLN---ENDAYLHITSNNTIY 154 (360)
T ss_dssp EEEEECSHHHHH-H-HHHHHTTS-EEEEEEECGGGTS-------------CSCCCGGGCCCC---TTEEEEEEESEETTT
T ss_pred ccEEEecchhHH-H-HHHHHHhC-CeEEeecccccCc-------------CCccchHhhccC---CCCCEEEEeCCCCCc
Confidence 223333222221 1 11122223 3222111100111 15666766 664 468888887777778
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
|.+.+ + +. ++||+++|+||+|+.+. .......+ +.-+.++||.+++ .++||+++++++++.+....
T Consensus 155 G~~~~--~-i~------~~~~~~li~D~a~~~~~--~~~~~~~~--di~~~s~sK~~~~-~G~G~~~~~~~~~~~~~~~~ 220 (360)
T 1w23_A 155 GTQYQ--N-FP------EINHAPLIADMSSDILS--RPLKVNQF--GMIYAGAQKNLGP-SGVTVVIVKKDLLNTKVEQV 220 (360)
T ss_dssp TEECS--S-CC------CCCSSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTSC-TTCEEEEEEHHHHCSCCTTC
T ss_pred ceecc--c-cc------ccCCceEEEechhhcCC--CCcCcccC--CEEEEEcccccCC-CCcEEEEEcHHHHhhcccCC
Confidence 87765 1 33 27999999999997541 11112222 2224578899973 25999999988877665422
Q ss_pred Ccc--------cccc-CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEE--e--eccceEE
Q 017633 234 PMY--------QAGT-LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICG--G--YISGMFG 299 (368)
Q Consensus 234 ~~~--------~~~t-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~--~--~~~~~~~ 299 (368)
... ...+ .+.+..++.++.++++.+.+.+..+.+.++.+..++.+.+.+.+.+ ..... + ..+.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 300 (360)
T 1w23_A 221 PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT 300 (360)
T ss_dssp CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEE
T ss_pred cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEE
Confidence 111 1122 2446667777777887665432333444444444444444433333 21111 2 1233677
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccccc--CCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~~~--~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+. +..+..++.+.|.++||.+.++.. ..+|+++ ..+++++++++++|++++++
T Consensus 301 ~~~~-------------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 301 FNLR-------------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EECS-------------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEcC-------------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 7652 223457788889999999988742 3456544 46999999999999998865
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=170.79 Aligned_cols=287 Identities=15% Similarity=0.120 Sum_probs=183.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
++++...+|+++++++++.. ..++++||++|+..+++.+ ..++|.|++.++.|++........
T Consensus 79 ~~~p~~~~le~~lA~l~g~~-~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~-------------- 141 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGAL-GVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKT-------------- 141 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTH--------------
T ss_pred CCCHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHH--------------
Confidence 45678899999999998654 4666778999999998766 457889999998887754322100
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++||++||+|++|+. +
T Consensus 142 --~~~~G~~~~~v~~~d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~---~ 209 (430)
T 3ri6_A 142 --LPSFGIEVRFVDVMDSLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP---P 209 (430)
T ss_dssp --HHHTTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC---T
T ss_pred --HHHcCCEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc---c
Confidence 001123455566668999999997 47899999988888898888 99999999999999999999962 2
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccceeeee--hH-HH------------------HHHhcCCCCccccccCCCCHHH
Q 017633 190 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG--RR-DI------------------MEMVAPAGPMYQAGTLSGNPLA 247 (368)
Q Consensus 190 ~~~~~~~~~~~~di~s~sK~~~~-G~~iG~v~~--~~-~~------------------~~~~~~~~~~~~~~t~~~~~~~ 247 (368)
.......++.+..+.|+||.++| |..+|.+++ .+ .+ +...+. ..........++..
T Consensus 210 ~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~--~~~~~~g~~~~~~~ 287 (430)
T 3ri6_A 210 YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARK--EVFQNLGPSLSPHN 287 (430)
T ss_dssp TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHH--THHHHHCCCCCHHH
T ss_pred ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHH--HHHHhcCCCCCHHH
Confidence 22223345555556789999995 444555433 21 11 111110 01111222456777
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-----------------eccc-eEEEEeecCCCcc
Q 017633 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGPVYN 309 (368)
Q Consensus 248 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~ 309 (368)
+..++..++.+ ....++..++++.+.+.|++ .+....+. +.|. ++++.+.
T Consensus 288 a~l~l~~l~~l--~~r~~~~~~na~~la~~L~~----~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~------ 355 (430)
T 3ri6_A 288 AYLQSLGLETM--ALRIERSCQNAQELAHWLLS----IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE------ 355 (430)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTT----CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------
T ss_pred HHHHHhhhhhH--HHHHHHHHHHHHHHHHHHhC----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC------
Confidence 77766666655 22345556666666666644 33222221 2355 8888873
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeecCCCCCcc-------------------------ccccCCCHHHHHHHHHHHHHH
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG-------------------------FTSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~-------------------------~~~~~~~~~~i~~~~~~l~~~ 364 (368)
+..+..+|.+.|.-.++.++.|+.... ++++.+..|+.+.+++.|+++
T Consensus 356 -------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~~a 428 (430)
T 3ri6_A 356 -------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQA 428 (430)
T ss_dssp -------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHh
Confidence 234456677777655666666542211 123455668888899999888
Q ss_pred Hh
Q 017633 365 LR 366 (368)
Q Consensus 365 l~ 366 (368)
++
T Consensus 429 l~ 430 (430)
T 3ri6_A 429 LC 430 (430)
T ss_dssp HC
T ss_pred hC
Confidence 63
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=171.15 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=120.1
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhh---hhcCCCccccCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 106 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 106 (368)
+..+...+++++++++++.. ..++++||++|+..+++.+ ..+++.|++..+.||+...... ...|.
T Consensus 55 ~~~~~~~~l~~~la~~~g~~-~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 123 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGGK-AALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI-------- 123 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCCC-ceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 35567899999999998744 4456667999999999866 3567899999999988654432 22222
Q ss_pred CCCCCCCCCCCccccc-CCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhc
Q 017633 107 DSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 185 (368)
++..+ +.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++||+++|+||+|.+
T Consensus 124 -----------~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 124 -----------EVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp -----------EEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG
T ss_pred -----------EEEEECCCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc
Confidence 23444 4458999999997 47899999999888998888 99999999999999999999943
Q ss_pred h-hcccCccccccCCCcchh--hhhhhccC-Cccceeeeeh
Q 017633 186 F-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR 222 (368)
Q Consensus 186 ~-~~g~~~~~~~~~~~~di~--s~sK~~~~-G~~iG~v~~~ 222 (368)
+ ..+. .++..+|++ |++|.+++ |.++|++++.
T Consensus 186 ~g~~~~-----~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 186 GGYLLR-----PLAWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp GGTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 3 2221 223346765 88999994 7899988663
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=174.00 Aligned_cols=311 Identities=17% Similarity=0.111 Sum_probs=182.7
Q ss_pred CCcHHHHHHHHHHHHcCC--C-----CCCCC----hhHHHHHHHHHhhCC-CCC----eEEEeCChHHHHHHHHHHHHHh
Q 017633 9 PSYLQVLAALGETMKKGT--S-----FGAPC----LLENVLAEMVISAVP-SIE----MVRFVNSGTEACMGVLRLARAF 72 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~--~-----~~~~~----~~~~~l~~~l~~~~~-~~~----~v~~~~~gt~a~~~al~~~~~~ 72 (368)
..+|++++++.+.+.+.. . ++... +....++++++++++ +.+ .|+++ ||++++..++..+ .
T Consensus 55 ~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sGs~an~~~~~al--l 131 (483)
T 1rv3_A 55 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGSPANFAVYTAL--V 131 (483)
T ss_dssp CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHH--T
T ss_pred CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-CcHHHHHHHHHHh--c
Confidence 367899999988876522 1 11122 344556688889887 432 25555 5778888877655 4
Q ss_pred cCCceEEEEcCCCCCCchhhhh-------hcCCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE
Q 017633 73 TGRERIIKFEGCYHGHADPFLV-------KAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~ 143 (368)
.++|.|++.+..|.++...... ..|..+....+ ....+. -|+++|++++++. ++++
T Consensus 132 ~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~-------------iD~d~le~~i~~~--~tkl 196 (483)
T 1rv3_A 132 EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGY-------------IDYDRLEENARLF--HPKL 196 (483)
T ss_dssp CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCS-------------BCHHHHHHHHHHH--CCSE
T ss_pred CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCc-------------CCHHHHHHHHhhc--CCcE
Confidence 5788999998887776432211 11100111111 001111 1899999999842 5677
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhh-ch-hcccC-ccccccCCCcch--hhhhhhccCCcccee
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDL--TTLGKIIGGGLPVGA 218 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~-~~g~~-~~~~~~~~~~di--~s~sK~~~~G~~iG~ 218 (368)
+++ ..++++ .+.+ +++|+++|++||++||+|++|. |+ ..+.. ..+. ..|+ .|++|+++ |+|.|+
T Consensus 197 Ii~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~ 265 (483)
T 1rv3_A 197 IIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGM 265 (483)
T ss_dssp EEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEE
T ss_pred EEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceE
Confidence 777 444444 6666 9999999999999999999984 55 33321 1111 2354 46779984 678899
Q ss_pred eeehHH---------------HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHH
Q 017633 219 YGGRRD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 280 (368)
Q Consensus 219 v~~~~~---------------~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~ 280 (368)
++++++ +.+.+... ...+...+++...+++..++++.+.+ +++.+++.++++++.+.|.+
T Consensus 266 i~~~~~~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (483)
T 1rv3_A 266 IFYRRGVRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE 343 (483)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 988764 22222210 00011123445556666667776543 23455566666666666655
Q ss_pred HHHhcCCceEEee-ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeec----CCCC-----Ccccccc---
Q 017633 281 AGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQF-----EAGFTSL--- 347 (368)
Q Consensus 281 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~-----~~~~~~~--- 347 (368)
. ++....++ ...+.++.+.. ...+..++.+.|.+.||.+. |+.. ..+|+++
T Consensus 344 ~----g~~~~~~~~~~~~~~v~~~~------------~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~ 407 (483)
T 1rv3_A 344 L----GYKIVTGGSDNHLILVDLRS------------KGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPAL 407 (483)
T ss_dssp T----TCEEGGGSCSSSEEEEEGGG------------GTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHH
T ss_pred c----CCEeccCCCCCceEEEeccC------------CCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCc
Confidence 3 43221111 12455666532 11124667888888999998 6531 2344432
Q ss_pred ---CCCHHHHHHHHHHHHHHHh
Q 017633 348 ---AHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 348 ---~~~~~~i~~~~~~l~~~l~ 366 (368)
.++++|++++++.|++++.
T Consensus 408 ~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 408 TSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHH
Confidence 2238999999999998875
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=169.45 Aligned_cols=289 Identities=13% Similarity=0.066 Sum_probs=175.7
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCChhHHHHHHHHHhhCCCCCeEE--EeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~--~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+.+++++++.++... ...+.++.....++++.++++++...... +.+||++|+..++... ..++|.|++.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al--~~~Gd~Vl~~ 113 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI--LRPGDELLYI 113 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTT--CCTTCEEEEC
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHh--CCCCCEEEEe
Confidence 345677777664211 13456677888999999999997433222 1348999999998755 3567888888
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-----CCHHHHHHHHHcCCCCeEEEEEcccCCCCCcc
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVVGNSGFI 156 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (368)
.+..|+.+...+...+. ........+.+++.++. .|+++++++++ ++++++++++..++++..
T Consensus 114 ~~~~y~~~~~~~~l~g~---------~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~ 181 (431)
T 3ht4_A 114 TGKPYDTLEEIVGVRGK---------GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRP 181 (431)
T ss_dssp SSSCCTTHHHHTTSSSC---------SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSC
T ss_pred CCCCchhHHHHHhhccc---------ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCC
Confidence 73444544443333221 11112223334444443 28999999997 478999998644443333
Q ss_pred cCCHHHHHHHHHHHHH--hCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC--ccceeeeehHHHHHHhcC
Q 017633 157 APKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 157 ~~~~~~l~~i~~l~~~--~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G--~~iG~v~~~~~~~~~~~~ 231 (368)
..+.+.+++|+++|++ ||+++|+||+|..+ ..... ..++.+..+.|+||+++|| .+.|++++++++++.+..
T Consensus 182 ~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~---~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~ 258 (431)
T 3ht4_A 182 SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP---CHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAY 258 (431)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG---GGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc---cccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHH
Confidence 4444559999999999 99999999999765 32221 1234444556899999864 567999999988887753
Q ss_pred CC-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcc
Q 017633 232 AG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 232 ~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.. ....+.+.+++...+.++...++.+ +.+.++..++++++++.|++..... +. ...+..+.++.+.+.
T Consensus 259 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~------ 329 (431)
T 3ht4_A 259 RLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD------ 329 (431)
T ss_dssp HHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC------
T ss_pred HhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC------
Confidence 10 1111222222222233344455543 3456778888888888888764321 11 011122336666652
Q ss_pred cchhcccccHHHHHHHHHHHHc
Q 017633 310 FEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+.....++++.|.+.
T Consensus 330 -------~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 330 -------DKDRMIAFCQAIQYA 344 (431)
T ss_dssp -------CHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhc
Confidence 345567889988876
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=167.11 Aligned_cols=313 Identities=15% Similarity=0.074 Sum_probs=176.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------ChhHHHHHHHHHhhCC-CCC---eEEEeCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIE---MVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~---~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|+|++++...+.+....+++ .+++...+++++++++ +.+ ..++++||++|+..++..+ ..+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al--~~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH--cCC
Confidence 5889999998877652211111 2333445588999997 332 3466678999999999766 457
Q ss_pred CceEEEEcCCCCCCchh-------hhhhcCCCccccCCC--CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE
Q 017633 75 RERIIKFEGCYHGHADP-------FLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 145 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~ 145 (368)
+|.|++.+..+.++... .+...+.......++ ...+. .|++++++.++.+ ++++++
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~-------------iD~d~le~~l~~~--~~klIi 208 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGL-------------IDYNQLALTARLF--RPRLII 208 (490)
T ss_dssp CEECCC-------------------------------CCBCTTTCS-------------BCHHHHHHHHHHH--CCSEEE
T ss_pred CCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCC-------------cCHHHHHHHHhhc--CCcEEE
Confidence 88898887766543211 111222211111111 00111 1899999999753 455666
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccC-ccccccCCCcchhhhhhhccCCccceeeeeh
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 222 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~-~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~ 222 (368)
+...+ .+...+ +++|+++|++||++|++|++| .|+ ..|.. ..+. +.+.-+.|++|+++ |++.|+++++
T Consensus 209 ~~~s~--~~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~-Gp~GG~i~~~ 279 (490)
T 2a7v_A 209 AGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLR-GARSGLIFYR 279 (490)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGC-SCSCEEEEEE
T ss_pred EcCCC--CCCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCc-cccchheeec
Confidence 54322 223445 999999999999999999998 455 33322 1111 22222346789995 5678998887
Q ss_pred HH---------------HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHh
Q 017633 223 RD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 284 (368)
Q Consensus 223 ~~---------------~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 284 (368)
++ +.+.++.. .+.+...+++...+++..+++..... +++.+++.++++++++.|.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~i~~~--~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~--- 354 (490)
T 2a7v_A 280 KGVKAVDPKTGREIPYTFEDRINFA--VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--- 354 (490)
T ss_dssp CSEEEEETTTEEEEECCCHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cchhcccccccchhhHHHHHHHHHH--hcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 53 33333310 00111112345555555556655433 345667777888888888763
Q ss_pred cCCceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC----CC-C----cccc------ccC
Q 017633 285 AGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QF-E----AGFT------SLA 348 (368)
Q Consensus 285 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~-~----~~~~------~~~ 348 (368)
++..... ...+++++++... ..+..++.+.|.++||.+..+ .. + .+|+ +..
T Consensus 355 -G~~v~~~~t~t~lv~vdl~~~------------g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 355 -GYSLVSGGTDNHLVLVDLRPK------------GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp -TCEEGGGSCSSSEEEEECTTT------------TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred -CcEEecCCCCCeEEEEEeCCC------------CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 3322111 2245777776421 123467888898999999743 11 1 1233 235
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 017633 349 HSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 349 ~~~~~i~~~~~~l~~~l~ 366 (368)
.+++|++++.+.|.+++.
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999988874
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-18 Score=163.54 Aligned_cols=313 Identities=13% Similarity=0.020 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHh-------cC----CceEEEEcCCCCCCchhhhhhcCCC
Q 017633 34 LENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPFLVKAGSG 99 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~-------~~----~~~vi~~~~~~~~~~~~~~~~~~~~ 99 (368)
.+.++.+++++.++ + .+.+++++|||+|+..++..++.. .+ .+.+|+.+...|.....+....+.+
T Consensus 133 le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g 212 (504)
T 2okj_A 133 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFG 212 (504)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCC
Confidence 45667778888887 4 679999999999999999887532 23 1424444445555555444444432
Q ss_pred ---ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 100 ---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
+...+... .+.. |+++|++++++. ..+++++++...++++|.+.+ +++|+++|++|
T Consensus 213 ~~~v~~v~~~~-~~~~-------------d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~ 274 (504)
T 2okj_A 213 TDNVILIKCNE-RGKI-------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKY 274 (504)
T ss_dssp GGGEEEECBCT-TSCB-------------CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHH
T ss_pred cccEEEEecCC-CCCC-------------CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHc
Confidence 22211111 1111 899999999741 125788888777777888877 99999999999
Q ss_pred CCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehH-HHHHH-hcCCCCccccc--------
Q 017633 174 GALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEM-VAPAGPMYQAG-------- 239 (368)
Q Consensus 174 ~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~-~~~~~-~~~~~~~~~~~-------- 239 (368)
|+++++|++|.++ .....+.....++ .+|+++ .+|.+++++++|++++++ ++.+. +.....+..+.
T Consensus 275 g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 354 (504)
T 2okj_A 275 NLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSY 354 (504)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGG
T ss_pred CCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcC
Confidence 9999999999766 3221111111222 456655 459998778999998865 45543 22111111100
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeccceEEEEeecCCC
Q 017633 240 ---------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTEGPV 307 (368)
Q Consensus 240 ---------t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 307 (368)
+.....+.+.+++.++..-.-+++.++..++++++.+.|++ .+..... .....++.+...+...
T Consensus 355 ~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 355 DTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN----REEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp CCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEecCCCCeEEEEEEEeCccc
Confidence 01123555555544443110022334444455555544443 3211111 1233444444321100
Q ss_pred cccch---hcccccHHHHHHHHHHHHcCee-ecCC---CC-Cccccc---cCCCHHHHHHHHHHHHHHHhhC
Q 017633 308 YNFED---AKKSETTKFARFYRGMLEEGVY-FAPS---QF-EAGFTS---LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 308 ~~~~~---~~~~~~~~~~~~~~~l~~~Gi~-~~~~---~~-~~~~~~---~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..... ..........++.+.|.++|+. +.+. +. ..+|++ ..++++|+++++++|+++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00000 0000001245788899999954 4322 21 244543 4479999999999999987653
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-19 Score=160.34 Aligned_cols=281 Identities=14% Similarity=0.090 Sum_probs=173.5
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCChhHHHHHHHHHhhCCCCCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 10 SYLQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
+.++|++++.++... ...|+++.....+|++.++++++..+.+++ ++||++|+..++..+ ..++|.|++.
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al--l~~GD~Vl~~ 107 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGI--LRPDDELLYI 107 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHH--CCTTCEEEEC
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHh--cCCCCEEEEe
Confidence 345677888775321 234667777889999999999875444443 789999999998765 3567888888
Q ss_pred c-CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-----CCHHHHHHHHHcCCCCeEEEEEcc----cCC
Q 017633 82 E-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVG 151 (368)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~~~~~~~~~~~~~~~~----~~~ 151 (368)
. +.|.+.. ..+...+. ........+.++..++. .|+++++++++ ++++++++++ .++
T Consensus 108 ~~~~y~~~~-~~~~~~g~---------~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 108 TGQPYDTLE-EIVGIRKQ---------GQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADR 174 (409)
T ss_dssp SSSCCTTHH-HHHTSSSS---------SSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSS
T ss_pred CCCCcHhHH-HHHhcccc---------hhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCC
Confidence 7 5555432 11111110 00001111222333332 28999999987 4789999998 777
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC--ccceeeeehHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIM 226 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G--~~iG~v~~~~~~~ 226 (368)
++|.+.+ +++|+++|++ ||+++++||+|..+ .... ...++.+.-+.|+||.++|+ ...||++++++++
T Consensus 175 ptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~---p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li 247 (409)
T 3jzl_A 175 PSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQE---PPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALV 247 (409)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCC---SGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHH
T ss_pred CcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCC---ccccCCeEEEECccccCCccCCceEEEEEeCHHHH
Confidence 7887776 9999999999 99999999999644 1111 11233333345899999964 4568899999988
Q ss_pred HHhcCCC-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-----eEEE
Q 017633 227 EMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-----MFGF 300 (368)
Q Consensus 227 ~~~~~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~ 300 (368)
+.+.... ....+...+.....+.++...++.+ +...++..++++++++.|++. +... .++... ++.+
T Consensus 248 ~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v-~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 248 DLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEA-DPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSCCEE
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcc-cCCCCCCCccEEEEE
Confidence 8876311 1111122222222233444455433 345666777777777777764 3321 222222 5566
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHHcC
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 332 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 332 (368)
.+. +.....++++.|.+..
T Consensus 321 ~l~-------------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 321 SFH-------------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp ECS-------------CHHHHHHHHHHHHHTS
T ss_pred EeC-------------CHHHHHHHHHHHHhcC
Confidence 552 4455678999998874
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-18 Score=163.30 Aligned_cols=311 Identities=14% Similarity=0.079 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh-----c-CCc------eEEEEcCCCCCCchhhhhhcCC-
Q 017633 33 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----T-GRE------RIIKFEGCYHGHADPFLVKAGS- 98 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~-----~-~~~------~vi~~~~~~~~~~~~~~~~~~~- 98 (368)
+.+.+++++++++++ +.+.+++++|||+|+..++..++.. . +++ .|++ +...|.+...+....|.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~-s~~~h~s~~~~~~~~g~g 226 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFT-SKECHYSIQKGAAFLGLG 226 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCCccHHHHHHHHHcCCC
Confidence 456778888999887 5679999999999999999877531 1 232 4444 44456655555554444
Q ss_pred --CccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 99 --GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
.+...+... .+.. |+++|++++++. ..+++++++...++++|.+.+ +++|+++|++|
T Consensus 227 ~~~v~~v~~~~-~~~~-------------d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~ 288 (515)
T 2jis_A 227 TDSVRVVKADE-RGKM-------------VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH 288 (515)
T ss_dssp GGGEEEECBCT-TSCB-------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred CCcEEEEecCC-CCcC-------------CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence 222111111 1111 899999999741 124788888777777888887 99999999999
Q ss_pred CCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehHH--HHHH-hcCCCCcc----------
Q 017633 174 GALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEM-VAPAGPMY---------- 236 (368)
Q Consensus 174 ~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~~--~~~~-~~~~~~~~---------- 236 (368)
|+++++|++|+++ .....+.....++ .+|+++ ++|.++++.++|+++++++ +.+. +.....+.
T Consensus 289 g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 368 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVA 368 (515)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGG
T ss_pred CCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccccccc
Confidence 9999999999876 3322221112233 457665 5799987788999988755 6553 21111111
Q ss_pred -ccccC------CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 237 -QAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 237 -~~~t~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
...++ ....+.+.+++.++..-.-+++.++..++++++.+.|++. .++..........+.+...+.....
T Consensus 369 ~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 369 LDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR---EGFELVMEPEFVNVCFWFVPPSLRG 445 (515)
T ss_dssp GCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTEEESSCCSSSEEEEEECCGGGTT
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCeeEEEEEEeCccccc
Confidence 01111 1123444444433321100224455555566665555542 1221111111233344332110000
Q ss_pred cchhccccc--H----HHHHHHHHHHHcCeeecC-----CCCCcccc---ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 310 FEDAKKSET--T----KFARFYRGMLEEGVYFAP-----SQFEAGFT---SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 310 ~~~~~~~~~--~----~~~~~~~~l~~~Gi~~~~-----~~~~~~~~---~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
. ..... . ....+.+.|.++|+.+.. +....+|+ +..++++|++++++.|++++.++
T Consensus 446 ~---~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 446 K---QESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp C---TTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred c---ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0 00000 0 112467888889976532 11223444 44589999999999999988764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-19 Score=166.25 Aligned_cols=323 Identities=12% Similarity=-0.030 Sum_probs=187.0
Q ss_pred CCcHHHHHHHHHHHHcCCC-C-CC--CChhHHHHHHHHHhhCC-C--CC---eEEEeCChHHHHHHHHHHHHHh-c----
Q 017633 9 PSYLQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF-T---- 73 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~-~-~~--~~~~~~~l~~~l~~~~~-~--~~---~v~~~~~gt~a~~~al~~~~~~-~---- 73 (368)
..+|.+.+++.+.+..... + .+ ..+.+.+++++++++++ + .+ ...+++||++|+..++..++.. .
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3578899999887765322 1 11 22456678888899886 3 23 3446899999999998665432 0
Q ss_pred -CCc-----eEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEc
Q 017633 74 -GRE-----RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 147 (368)
Q Consensus 74 -~~~-----~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~ 147 (368)
.++ +|++...+ |.....++...|.++.........+.. |+++++++++ ++++++++.
T Consensus 147 ~~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~t~~v~~~ 209 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANV-QVCWEKFARYFEVELKEVKLSEGYYVM-------------DPQQAVDMVD---ENTICVAAI 209 (502)
T ss_dssp HTTCCCSCCEEEEETTC-CHHHHHHHHHTTCEEEEECCBTTBCSC-------------CHHHHHHHCC---TTEEEEEEE
T ss_pred hcCCCCCCcEEEEcCCc-hHHHHHHHHHcCceeEEEecCCCcCcC-------------CHHHHHHHHh---hCCEEEEEe
Confidence 122 66665544 444445555555544332221111111 8999999997 467777776
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEehhhhch-h--cccCccccccCCCcchh--hhhhhccCCccc
Q 017633 148 PVVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPV 216 (368)
Q Consensus 148 ~~~~~~g~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~-~--~g~~~~~~~~~~~~di~--s~sK~~~~G~~i 216 (368)
..++++|.+.+ +++|.++|++| |++|++|++|.++ . .......+.--...|.+ +..|.+.++.++
T Consensus 210 ~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 210 LGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp BSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC
T ss_pred cCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCe
Confidence 66667788888 99999999999 9999999999764 1 11111111101134554 455888777899
Q ss_pred eeeeeh-HHHH-HHhcCCCCc----ccc--ccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhc
Q 017633 217 GAYGGR-RDIM-EMVAPAGPM----YQA--GTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKA 285 (368)
Q Consensus 217 G~v~~~-~~~~-~~~~~~~~~----~~~--~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~ 285 (368)
|+++.+ +..+ +.+.....+ ... ..++.+.....+..+++..+..++ ..++..++++++++.|.+ .
T Consensus 286 G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~----~ 361 (502)
T 3hbx_A 286 GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK----T 361 (502)
T ss_dssp EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C
Confidence 988664 4333 222110000 000 012222223444445555443333 344455555555555544 4
Q ss_pred CCceEEe--eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-------cccc--ccCCCHHHH
Q 017633 286 GHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------AGFT--SLAHSSDDI 354 (368)
Q Consensus 286 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-------~~~~--~~~~~~~~i 354 (368)
+...... ...+++.+.+... ......++.+.|.++|+.+.....+ .+|+ ...++++++
T Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~-----------~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 362 ERFNIVSKDEGVPLVAFSLKDS-----------SCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp TCEEECSCSSSSSEEEEEESSC-----------SSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred CCEEEEeCCCCceEEEEEecCC-----------CcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 4221222 2445666665321 1112358999999999997643221 2333 455689999
Q ss_pred HHHHHHHHHHHhh
Q 017633 355 QHTITAAEKVLRQ 367 (368)
Q Consensus 355 ~~~~~~l~~~l~~ 367 (368)
+++++.|++++++
T Consensus 431 d~li~~L~~~l~~ 443 (502)
T 3hbx_A 431 ERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=172.31 Aligned_cols=300 Identities=10% Similarity=-0.060 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHc-CC-CCCCCC-h-h---HHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHHH------
Q 017633 12 LQVLAALGETMKK-GT-SFGAPC-L-L---ENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLARA------ 71 (368)
Q Consensus 12 ~~v~~a~~~~~~~-~~-~~~~~~-~-~---~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~~------ 71 (368)
+.+++++.+.+.. .. ...|+. . . ..+|++.++++++ +++++++|+|+++++..++..+..
T Consensus 72 ~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~ 151 (427)
T 2hox_A 72 YWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATP 151 (427)
T ss_dssp HHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCT
T ss_pred HHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhcccccc
Confidence 3566666666532 22 211222 2 2 5777777777663 468999999999999999876510
Q ss_pred hcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 72 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 72 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
..+++.|++..++|...... ....|..+. .+.. |+++|++.++ ++++++++...+|
T Consensus 152 ~~~Gd~Vlv~~P~y~~~~~~-~~~~g~~~~-------------------~~~~-d~~~l~~~~~---~~~k~v~l~~p~N 207 (427)
T 2hox_A 152 DAPESKVVAHAPFYPVFREQ-TKYFDKKGY-------------------VWAG-NAANYVNVSN---PEQYIEMVTSPNN 207 (427)
T ss_dssp TSCCEEEEECSSCCHHHHHH-HHHSCBTTE-------------------EEEE-EGGGGTTCSC---GGGEEEEEESSCT
T ss_pred CCCCCEEEEeCCCcccHHHH-HHHcCCeee-------------------eecC-CHHHHHHhhc---CCceEEEEcCCCC
Confidence 24678899988888654333 233333221 1111 6777777665 2456655554455
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhcc-CCccceeeee-hHHHHHHh
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMV 229 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~ 229 (368)
++|.+++ +.+ + ++..+.|+++.+ ......... .+....+.||||.++ +|+|+||+++ ++++++.+
T Consensus 208 PtG~~~~--~~l-------~--~~~~i~d~~~~~-~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l 274 (427)
T 2hox_A 208 PEGLLRH--AVI-------K--GCKSIYDMVYYW-PHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNL 274 (427)
T ss_dssp TTCCCCC--CSS-------T--TCEEEEECTTCS-TTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHH
T ss_pred CcccccH--HHH-------c--CCCEEEeecccC-CCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHH
Confidence 5676666 312 2 556778877742 000111111 233444669999998 8999999998 58888887
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHHHHHHhc-CCc-----------
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPGTYEYLNKITGELTQGIIDAGKKA-GHA----------- 288 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~----------- 288 (368)
.. .....+++++.+++.++..+++... -+.+.++.++..+..++.+.+.+.+. +..
T Consensus 275 ~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 351 (427)
T 2hox_A 275 LN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCN 351 (427)
T ss_dssp HH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEET
T ss_pred HH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccc
Confidence 63 2233445788888888887776431 13333333333333444444444433 111
Q ss_pred ---eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCC-----CCccccccCCCHHHHHHHHH
Q 017633 289 ---ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTIT 359 (368)
Q Consensus 289 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----~~~~~~~~~~~~~~i~~~~~ 359 (368)
...+..+.++|+.+.. +..++++.|+ ++||.++++. ...+|+++..++++++++++
T Consensus 352 ~~~~~~p~~g~f~~~~~~~---------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l~ 416 (427)
T 2hox_A 352 YFRRMRPPSPSYAWVKCEW---------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMY 416 (427)
T ss_dssp TTTEEECCCCSEEEEEECS---------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHH
T ss_pred cccccCCCCceEEEEECCC---------------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHHH
Confidence 1123346677877631 1245677765 7899999873 23467777789999999999
Q ss_pred HHHHHHh
Q 017633 360 AAEKVLR 366 (368)
Q Consensus 360 ~l~~~l~ 366 (368)
+|++++.
T Consensus 417 ~l~~~~~ 423 (427)
T 2hox_A 417 YLKDMVK 423 (427)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=166.46 Aligned_cols=218 Identities=10% Similarity=-0.007 Sum_probs=146.3
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
+.++...++++.++++++.. .+++++||++|+..+++.. ..++|.||+..+.|++........
T Consensus 79 ~~~p~~~~le~~lA~l~g~~-~~i~~ssGt~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~-------------- 141 (415)
T 2fq6_A 79 RGTLTHFSLQQAMCELEGGA-GCVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDFCSKI-------------- 141 (415)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHTT--CCTTCEEEEETTSCHHHHHHHHHT--------------
T ss_pred CCCchHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHH--------------
Confidence 35677899999999998643 5666789999999998754 246789999988887643222111
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEehhhhchh
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~~ 187 (368)
....+.++..++.+|+++++++++ ++++++++++.+|++|.+.+ +++|+++|++ ||+++|+|++|+...
T Consensus 142 --l~~~G~~v~~v~~~d~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~ 212 (415)
T 2fq6_A 142 --LSKLGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415)
T ss_dssp --GGGGTCEEEEECTTCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred --HHHcCcEEEEECCCCHHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 001122344455558999998887 46899999988888899998 9999999999 999999999996321
Q ss_pred cccCccccccCCCcchhhhhhhccC-Cc-cceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 188 LAYGGAQEYFGVTPDLTTLGKIIGG-GL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di~s~sK~~~~-G~-~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
.... . .++.+.-+.|++|.+++ |. .+|++++++++++.+... ........++..+..+..+++.+ ....+
T Consensus 213 ~~~p--~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~---~~~~G~~~~~~~a~~~~~~l~~l--~~r~~ 284 (415)
T 2fq6_A 213 LFKA--L-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN---AYLMGQMVDADTAYITSRGLRTL--GVRLR 284 (415)
T ss_dssp SSCG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHH--HHHHH
T ss_pred cCCc--c-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhhhhHH--HHHHH
Confidence 1111 1 23332223478899994 43 468888887777666521 11112234666666666666644 22345
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDA 281 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~ 281 (368)
+..++.+.+++.|++.
T Consensus 285 ~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 285 QHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5666777777766653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=159.75 Aligned_cols=282 Identities=16% Similarity=0.107 Sum_probs=172.8
Q ss_pred cHHHHHHHHHHHHc------CCCCCCCChhHHHHHHHHHhhCCCCCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+.|++++.+.... ...|+++.....+|++.++++++....+++ ++||++|+..++..+ ..++|.|++.+
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl~~~ 123 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGN--LRPNDTMMSIC 123 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHT--CCTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHh--cCCCCEEEEeC
Confidence 35677777664221 234566777788999999999875444432 789999999888755 45788999987
Q ss_pred -CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC----CCHHHHHHHHHcCCCCeEEEEEcc----cCCCC
Q 017633 83 -GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVGNS 153 (368)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~~~~~~~~~~~~~~~~----~~~~~ 153 (368)
+.|++... .. ++.+. .........+.++..++. .|+++++++++++ ++++++++++ .++++
T Consensus 124 ~~~y~~~~~-~~--g~~~~------~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~npt 193 (427)
T 3hvy_A 124 GMPYDTLHD-II--GMDDS------KKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKS 193 (427)
T ss_dssp SSCCGGGHH-HH--TCCTT------CCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCC
T ss_pred CCCchhHHH-Hh--ccccc------hhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCcc
Confidence 66665421 11 00000 000111112333333433 3899999999853 3789999988 66666
Q ss_pred CcccCCHHHHHHHHHHHHH--hCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC--ccceeeeehHHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEM 228 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G--~~iG~v~~~~~~~~~ 228 (368)
|.+.+ +++|+++|++ ||+++++|++|..+ ..... ..++.+.-+.|+||.++|+ .+.|++++++++++.
T Consensus 194 g~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p---~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~ 266 (427)
T 3hvy_A 194 LRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEP---TDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQ 266 (427)
T ss_dssp CCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG---GGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHH
T ss_pred ccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCC---cccCCeEEEECCcccccccccceEEEEEECHHHHHH
Confidence 76665 9999999999 89999999999644 11111 1233333346899999954 467888999999888
Q ss_pred hcCCC-CccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-----eEEEEe
Q 017633 229 VAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-----MFGFFF 302 (368)
Q Consensus 229 ~~~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~ 302 (368)
++... ....+.+.+++.-.+..+...++.+ +.+.++..+++.++++.|++. +... .++... ++.+.+
T Consensus 267 l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~li~~~~l 339 (427)
T 3hvy_A 267 ATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTDIIQAIKF 339 (427)
T ss_dssp HHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSEEEEEC
T ss_pred HHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCceEEEEEeC
Confidence 76311 1111122222222244444444433 345667777777887777764 3321 222222 556655
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
. +.....++++.|...
T Consensus 340 ~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 340 N-------------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp S-------------SHHHHHHHHHHHHHT
T ss_pred C-------------CHHHHHHHHHHhccc
Confidence 2 345567888888775
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=156.69 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHc------CCCCCCCChhHHHHHHHHHhhCCCCCeEEE--eCChHHHHHHHHHHHHHhcCCceEEEEc-
Q 017633 12 LQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFE- 82 (368)
Q Consensus 12 ~~v~~a~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~--~~~gt~a~~~al~~~~~~~~~~~vi~~~- 82 (368)
++|++++.++... ...|+++.....+|++.++++++....+++ ++||++|+..++..+ ..++|.|++..
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al--l~pGD~Vl~~~~ 123 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN--LRPGNTMLSVCG 123 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHH--CCTTCEEEESSS
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 5677777654211 234566777789999999999975444443 789999999988765 35678898887
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCC-----CCHHHHHHHHHcCCCCeEEEEEcc----cCCCC
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVGNS 153 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~~~~~~~~~~~~~~~~----~~~~~ 153 (368)
+.|++.... +...+.. ........+.++..++. .|+++++++++++ ++++++++++ .++++
T Consensus 124 ~~y~~~~~~-~g~~~~~--------~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~npt 193 (427)
T 3i16_A 124 EPYDTLHDV-IGITENS--------NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRA 193 (427)
T ss_dssp SCCGGGHHH-HTCSCCC--------SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCC
T ss_pred CccHHHHHH-Hhccccc--------hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCc
Confidence 666553211 1000000 00011112223333333 2899999999852 3788999988 66667
Q ss_pred CcccCCHHHHHHHHHHHHH--hCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccC-C-ccceeeeehHHHHHH
Q 017633 154 GFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIMEM 228 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~--~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~-G-~~iG~v~~~~~~~~~ 228 (368)
|.+.+ +++|+++|++ ||+++++|++|..+ .... ...++.+.-+.|+||.++| | .+.|++++++++++.
T Consensus 194 g~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~---p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~ 266 (427)
T 3i16_A 194 LLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKE---PTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEK 266 (427)
T ss_dssp CCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSC---GGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHH
T ss_pred ccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCC---ccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHH
Confidence 77766 9999999999 99999999999744 1111 1123443334689999995 4 577999999999888
Q ss_pred hcCCC-CccccccCCCCHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccc-----eEEEE
Q 017633 229 VAPAG-PMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-----MFGFF 301 (368)
Q Consensus 229 ~~~~~-~~~~~~t~~~~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~~~~~ 301 (368)
++... ....+...+ +.+. +..++..++.+ ....++..+++.++++.|++. +... .++... ++.+.
T Consensus 267 l~~~~~~~~~g~~~~-~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~i~~i~ 338 (427)
T 3i16_A 267 TSYRLTVPGIGGECG-STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDIIQSIK 338 (427)
T ss_dssp HHHHHSCTTTGGGCC-CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSSCEEEE
T ss_pred HHHhcccCccCccCC-ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccEEEEEE
Confidence 76310 111111111 1122 34444444433 345667777777777777764 3322 222333 66666
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHHHc
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEE 331 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (368)
+. +.....+|++.|...
T Consensus 339 l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 339 FN-------------DKDKLIEFCKGIQTG 355 (427)
T ss_dssp CS-------------SHHHHHHHHHHHHHT
T ss_pred EC-------------CHHHHHHHHHHHhhc
Confidence 52 345567899999876
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-17 Score=152.85 Aligned_cols=299 Identities=10% Similarity=-0.013 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHhhCC-CC----------CeEEEeCChHHHHHHHHHHHHHhc-------C---------CceEEEEcCCC
Q 017633 33 LLENVLAEMVISAVP-SI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 85 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~~----------~~v~~~~~gt~a~~~al~~~~~~~-------~---------~~~vi~~~~~~ 85 (368)
+.+.++.+++++.++ +. ...++++|||+|+..++.+++... + ...+++.+...
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~ 197 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQA 197 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTS
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcc
Confidence 456666667777765 21 267899999999999998776421 0 12344555566
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CCeEEEEEcccCCCCCcccCCHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
|.+...+....+..+...+... .+.. |+++|++++++.. ..+.++++...++++|.+.+
T Consensus 198 H~s~~~~~~~~g~~~~~v~~~~-~~~~-------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---- 259 (481)
T 4e1o_A 198 HSSVEKAGLISLVKMKFLPVDD-NFSL-------------RGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---- 259 (481)
T ss_dssp CHHHHHHHHHHTCEEEEECCCT-TSCC-------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHhCCCceEEEEcCC-CCcC-------------CHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----
Confidence 6666655556555443322211 1111 8999999997521 12566666666666788777
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchh--hhhhhccCCccceeeeeh-HHHHH-HhcCCCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGR-RDIME-MVAPAGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~--s~sK~~~~G~~iG~v~~~-~~~~~-~~~~~~~~~ 236 (368)
+++|+++|++||+++++|++|.+. .....+.....++ ..|.+ +.+|++++...+|+++++ +.... .+.....+.
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 339 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYL 339 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhc
Confidence 999999999999999999999654 2221111111232 23544 457999977788888664 44433 222111111
Q ss_pred cc---------------ccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceE
Q 017633 237 QA---------------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 298 (368)
Q Consensus 237 ~~---------------~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 298 (368)
.. .+.....+.+.+ +++.+.. +++.++..++++++++.|++. .++........+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~---al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~~~~~~~~~~v 413 (481)
T 4e1o_A 340 RHANSGVATDFMHWQIPLSRRFRSVKLWF---VIRSFGVKNLQAHVRHGTEMAKYFESLVRND---PSFEIPAKRHLGLV 413 (481)
T ss_dssp CCTTTTTSCCGGGGSSSSCCCCTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTEECCSCCCSSEE
T ss_pred cCcccCCCCCcccccccCCCCccHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCceeEE
Confidence 10 011112333444 3333322 234455566666666666542 12221122334566
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCee-ecCC---CCCccccc---cCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-~~~~---~~~~~~~~---~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++.+.. ......++.+.|.++|+. +.+. +...+|++ ..++++|+++++++|++++++
T Consensus 414 ~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 414 VFRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 666531 223457899999999844 4432 22334443 445899999999999998764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=156.57 Aligned_cols=318 Identities=12% Similarity=-0.019 Sum_probs=174.7
Q ss_pred HHHHHHHHHHcCCCCCCC----ChhHHHHHHHHHhhCC-CC---------CeEEEeCChHHHHHHHHHHHHHh--c----
Q 017633 14 VLAALGETMKKGTSFGAP----CLLENVLAEMVISAVP-SI---------EMVRFVNSGTEACMGVLRLARAF--T---- 73 (368)
Q Consensus 14 v~~a~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~---------~~v~~~~~gt~a~~~al~~~~~~--~---- 73 (368)
+.+.+..++......+.. .+.+.++.+++++.++ +. ..+++|+|||+|+..++..++.. .
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 555555555332211111 2455567777788876 32 46899999999999999766432 1
Q ss_pred --CC-------ce-EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CC
Q 017633 74 --GR-------ER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GE 140 (368)
Q Consensus 74 --~~-------~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~ 140 (368)
+. ++ +++.+...|.....+....|.++...+.. ..+.. |+++|++++++.. ..
T Consensus 170 ~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d-~~~~~-------------d~~~L~~~i~~~~~~g~~ 235 (486)
T 1js3_A 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD-GKFAM-------------RASALQEALERDKAAGLI 235 (486)
T ss_dssp HSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC-TTSCC-------------CHHHHHHHHHHHHHTTCE
T ss_pred cCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC-CCCCC-------------CHHHHHHHHHHHHhCCCC
Confidence 21 23 34444444544455555555544332221 11111 8999999997421 11
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchh--hhhhhccCCccc
Q 017633 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPV 216 (368)
Q Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~--s~sK~~~~G~~i 216 (368)
+.++++...++++|.+.+ +++|+++|++||+++++|++|.++ .....+.....++ ..|.+ +.+|.+++++++
T Consensus 236 p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~ 311 (486)
T 1js3_A 236 PFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC 311 (486)
T ss_dssp EEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC
T ss_pred ceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcce
Confidence 235555555566777776 999999999999999999999764 2211111100111 23543 467999877899
Q ss_pred eeeeehH-HH-HHHhcCCCCcccc-----------------ccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 017633 217 GAYGGRR-DI-MEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGEL 274 (368)
Q Consensus 217 G~v~~~~-~~-~~~~~~~~~~~~~-----------------~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l 274 (368)
|++++++ .. .+.+.....+... .+.....+.+.+++ +.+.. +++.++..++++++
T Consensus 312 G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al---~~~g~~g~~~~~~~~~~~a~~l 388 (486)
T 1js3_A 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVF---RMYGVKGLQAYIRKHVQLSHEF 388 (486)
T ss_dssp EEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHH
Confidence 9998854 33 4444211111100 01112334444433 33322 23345555666666
Q ss_pred HHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC----CCCccccc---c
Q 017633 275 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTS---L 347 (368)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~~~~~~---~ 347 (368)
.+.|++. .++.........++.+.+.. ......++.+.|.++|+.+... +...+|++ .
T Consensus 389 ~~~L~~~---~~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 389 EAFVLQD---PRFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHC---TTEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred HHHHhcC---CCeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence 6666552 12211111233444554321 1122478899999898664332 22334443 3
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 017633 348 AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 348 ~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+++++++++++|++++.+
T Consensus 454 ~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 454 KVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999988754
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=161.23 Aligned_cols=304 Identities=9% Similarity=-0.047 Sum_probs=175.9
Q ss_pred CcHHHHHHHHHHHHcCCC--CCCCC--hhHHHHHHHHHhhCC-C-CCeEEE-eCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTS--FGAPC--LLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~--~~~~~--~~~~~l~~~l~~~~~-~-~~~v~~-~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.++...... +.++. +...+++++++++++ + .+++++ ++||++|+..+++.+. .++ ++++.
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--~~g--v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--DKR--SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--SSC--EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--CCC--eEEEe
Confidence 456788888663111111 22222 356789999999997 4 468998 9999999999998662 233 33334
Q ss_pred CCCCCCchh-hhhhc--CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCC
Q 017633 83 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 159 (368)
Q Consensus 83 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (368)
..+|+.... ..... |..+.....+ .+.. .+. + ++ ++++++++.+.++++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~------------~~~-~----i~---~~~~~v~~~~~~nptG~~~~- 183 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSA------------PEP-Q----TD---PSVDVIAWAHNETSTGVAVA- 183 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC------------CCC-C----CC---TTCSEEEEESEETTTTEECC-
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCC------------CCc-c----cc---CCCCEEEEeCcCCCcceecc-
Confidence 444432111 11211 2222211111 1110 011 0 22 35677777777777888888
Q ss_pred HHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHhcCC-----
Q 017633 160 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPA----- 232 (368)
Q Consensus 160 ~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~~~~----- 232 (368)
+++|.++ +|+++|+||+|+.+. ...... + +|+ .++||.++++-++||+++++++++.++..
T Consensus 184 ---~~~i~~~---~~~~vivD~a~~~~~--~~~~~~--~--~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~ 251 (398)
T 2fyf_A 184 ---VRRPEGS---DDALVVIDATSGAGG--LPVDIA--E--TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGR 251 (398)
T ss_dssp ---CCCCTTC---C-CEEEEECTTTTTT--SCCCGG--G--CSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTC
T ss_pred ---hHHhhhh---cCCeEEEEeccccCC--cccCcc--c--CcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCC
Confidence 5555555 899999999997441 111111 1 354 46789999543699999998887766310
Q ss_pred --CCcc-----------ccccCCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHhcCCceEE--e-
Q 017633 233 --GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKAGHAICG--G- 292 (368)
Q Consensus 233 --~~~~-----------~~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~- 292 (368)
..+. .....+.+..+++++.++++.+.+.+ +.++++++++++++.|++. . ++.... +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~~~ 328 (398)
T 2fyf_A 252 WVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER-P--YTTPFVTDPG 328 (398)
T ss_dssp CCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS-T--TEEESCCSGG
T ss_pred CCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc-C--CceeccCChh
Confidence 0000 01123456677777778887664433 3444555555555555442 0 221111 1
Q ss_pred eccc-eEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC----CCcccccc--CCCHHHHHHHHHHHHHHH
Q 017633 293 YISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 293 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~~--~~~~~~i~~~~~~l~~~l 365 (368)
..++ ++++.+. +..+..++.+.|.++||.++++. ...+|+++ .++++|+++++++|++++
T Consensus 329 ~~~~~~~~~~~~-------------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 329 LRSQVVGTIDFV-------------DDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp GBCSSEEEEEEC-------------TTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEECC-------------CCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1234 6777662 11235789999999999998752 23456544 469999999999999998
Q ss_pred hhC
Q 017633 366 RQI 368 (368)
Q Consensus 366 ~~~ 368 (368)
+++
T Consensus 396 ~~~ 398 (398)
T 2fyf_A 396 ERL 398 (398)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=155.93 Aligned_cols=301 Identities=10% Similarity=0.005 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHhhCCCC----------CeEEEeCChHHHHHHHHHHHHHhc-------C---------CceEEEEcCCCC
Q 017633 33 LLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCYH 86 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~~~----------~~v~~~~~gt~a~~~al~~~~~~~-------~---------~~~vi~~~~~~~ 86 (368)
+.+.++.+++++.++-+ ...++++|||+|+..++..++... + .+.+++.+...|
T Consensus 113 ~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H 192 (475)
T 3k40_A 113 ELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH 192 (475)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC
T ss_pred HHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch
Confidence 45666777778887622 268999999999999997775321 1 123455555666
Q ss_pred CCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 87 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.+...+....|..+...+... .+ . |+++|++++++. ...+.++++...++++|.+.+ +
T Consensus 193 ~s~~~~~~~~g~~~~~v~~d~-~~-~-------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l 253 (475)
T 3k40_A 193 SSVERAGLLGGVKLRSVQSEN-HR-M-------------RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----L 253 (475)
T ss_dssp HHHHHHHHHHTCEEEEECCBT-TB-C-------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----H
T ss_pred HHHHHHHHHcCCceEEEECCC-CC-c-------------CHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----H
Confidence 666666666665443332221 12 2 899999999852 112566666666666788877 9
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchh--hhhhhccCCccceeeeehH-HH-HHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGRR-DI-MEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~--s~sK~~~~G~~iG~v~~~~-~~-~~~~~~~~~~~~ 237 (368)
++|+++|++||+++++|++|.+. .....+.....++ ..|.+ +.+|++++...+|++++++ .. .+.+.....+..
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~ 333 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLK 333 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccC
Confidence 99999999999999999999653 2211111111122 23554 4569998777888887654 32 222221111110
Q ss_pred cc-----------cCCCC-HHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEe
Q 017633 238 AG-----------TLSGN-PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 302 (368)
Q Consensus 238 ~~-----------t~~~~-~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (368)
.. +...+ ........++++.+.. +++.++..++++++++.|++. .++........+++.+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~l~~~~~~~iv~f~~ 410 (475)
T 3k40_A 334 HDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD---SRFELAAEINMGLVCFRL 410 (475)
T ss_dssp ---------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEESSCCBTTEEEEEE
T ss_pred CCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEecCCceEEEEEEe
Confidence 00 00011 1122333344444433 334556666666666666553 122211223345666665
Q ss_pred ecCCCcccchhcccccHHHHHHHHHHHHcCeee-cCC---CCCccccc---cCCCHHHHHHHHHHHHHHHhh
Q 017633 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-~~~---~~~~~~~~---~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. ......++.+.|.++|..+ .+. +...+|++ ..++++|+++++++|++++++
T Consensus 411 ~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 411 KG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp SS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 31 2234578999999988654 332 22344543 345899999999999998764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=149.81 Aligned_cols=311 Identities=14% Similarity=0.048 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHhhCC-C--CCeEEEeCChHHHHHHHHHHHHHhc-------C----CceEEEEcCCCCCCchhhhhhcCC
Q 017633 33 LLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G----RERIIKFEGCYHGHADPFLVKAGS 98 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~--~~~v~~~~~gt~a~~~al~~~~~~~-------~----~~~vi~~~~~~~~~~~~~~~~~~~ 98 (368)
+.+.++.+++++.++ + .+.+++++|||+|+..++..++... + .+.+|+.+...|.+...+....|.
T Consensus 135 ~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 135 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCC
Confidence 345666667777776 3 4689999999999999997775421 1 233444455566655555555554
Q ss_pred C---ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 017633 99 G---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 172 (368)
Q Consensus 99 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~ 172 (368)
+ +....... .+.. |+++|++++++. ...++++++...++++|.+.+ +++|+++|++
T Consensus 215 g~~~~~~v~~d~-~~~~-------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~ 276 (511)
T 3vp6_A 215 GTDNVILIKCNE-RGKI-------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK 276 (511)
T ss_dssp CGGGEEEECBCT-TSCB-------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHH
T ss_pred CCCcEEEeecCC-CCcc-------------CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHH
Confidence 2 22211111 1111 899999999752 122778888777777888877 9999999999
Q ss_pred hCCEEEEehhhhch-hcccCccccccCC-Ccchh--hhhhhccCCccceeeeeh-HHHHHHh-cCCCCccccc-------
Q 017633 173 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMV-APAGPMYQAG------- 239 (368)
Q Consensus 173 ~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~--s~sK~~~~G~~iG~v~~~-~~~~~~~-~~~~~~~~~~------- 239 (368)
||+++++|++|.+. .....+.....+. ..|.+ +.+|+++++..+|+++++ +.+.+.. .....+....
T Consensus 277 ~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 356 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS 356 (511)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG
T ss_pred cCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccc
Confidence 99999999999754 2211111111122 23544 567999877788988764 4444433 2111111000
Q ss_pred ----------cCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE--eeccceEEEEeec
Q 017633 240 ----------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG--GYISGMFGFFFTE 304 (368)
Q Consensus 240 ----------t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 304 (368)
+.....+.+.+ +++.+.. +++.++..++++++++.|++. .++.... ....+++.+.+.+
T Consensus 357 ~~~~~~~~~~~r~~~al~~~~---al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~---pg~~l~~~~~p~~~~v~f~~~p 430 (511)
T 3vp6_A 357 YDTGDKAIQCGRHVDIFKFWL---MWKAKGTVGFENQINKCLELAEYLYAKIKNR---EEFEMVFNGEPEHTNVCFWYIP 430 (511)
T ss_dssp GCCGGGSSCSSCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTEEESSSSCCSSSCEEEEECC
T ss_pred cCccCCCCCCCCchHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEecCCCCeEEEEEEEeC
Confidence 00122333333 4443332 334556666666666666542 1222111 2334455555432
Q ss_pred CCCcccchh---cccccHHHHHHHHHHHHcCeeecC-----CCCCcccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 305 GPVYNFEDA---KKSETTKFARFYRGMLEEGVYFAP-----SQFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 305 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gi~~~~-----~~~~~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
...+..... .........++.+.|.++|+.+.. ++...+|+ +..++++|++++++.|++..+.
T Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 431 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 211100000 000001234788999999965433 11123443 4567999999999999987643
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=145.11 Aligned_cols=319 Identities=14% Similarity=0.045 Sum_probs=186.0
Q ss_pred CCCcHHHHHHHHHHHHcCCC---------CCC--CChhHHHHHHHHHhhCC-C-CCeEEE-eCChHHHHHHHHHHHHHhc
Q 017633 8 FPSYLQVLAALGETMKKGTS---------FGA--PCLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~---------~~~--~~~~~~~l~~~l~~~~~-~-~~~v~~-~~~gt~a~~~al~~~~~~~ 73 (368)
+.-+|+|++++.+.+.+... +.. ..+..++.++.++++++ + .++++| +.|||++++.++.-+....
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~ 101 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK 101 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence 34788999999988764211 100 12456788888999887 3 367888 5899999999997653322
Q ss_pred CCceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
++|++++...+.++... .... ..+.....++..... .. ++++++..++ ++++++.+..+.+.
T Consensus 102 ~Gd~v~~~~~g~~~~~~--~~~a~~~G~~~~~~~~~~~~---------~~---~~~~~~~~i~---~~t~lV~~~h~et~ 164 (377)
T 3e77_A 102 AGRCADYVVTGAWSAKA--AEEAKKFGTINIVHPKLGSY---------TK---IPDPSTWNLN---PDASYVYYCANETV 164 (377)
T ss_dssp TTCEEEECCCSHHHHHH--HHHHTTTSEEEECSCCCSSS---------CS---CCCGGGCCCC---TTCSCEEEESEETT
T ss_pred CCCeEEEEECCHHHHHH--HHHHHHhCCceEEeccCCCc---------CC---CCChHHhccC---CCccEEEEeCccCc
Confidence 36787776665655422 2221 112111111111000 00 3344443343 46777777676666
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
+|.+.| + +|+++|+++++|-+++ .|. ...++.+++ .+.+--|.+| +.++|++++++++.+.+..
T Consensus 165 tG~~~p----i-----i~~~~~~~~~vD~~q~---~g~~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~~~~~ 229 (377)
T 3e77_A 165 HGVEFD----F-----IPDVKGAVLVCDMSSN---FLSKPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLGFALR 229 (377)
T ss_dssp TTEECS----S-----CCCCTTCCEEEECTTT---TTSSCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCSCCCT
T ss_pred hheEch----h-----hhccCCCEEEEEcccc---cCCCCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHhhccC
Confidence 898888 5 4788999999999996 232 344555552 3344559995 5568888888776544432
Q ss_pred CCCccc--------ccc-CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEE---eec-cce
Q 017633 232 AGPMYQ--------AGT-LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICG---GYI-SGM 297 (368)
Q Consensus 232 ~~~~~~--------~~t-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~---~~~-~~~ 297 (368)
..+.+. ..+ .+++....+++.++++.+.+.+=.+.+.++.+.+.+.+.+.+.+. ++.... ... +..
T Consensus 230 ~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~i 309 (377)
T 3e77_A 230 ECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMN 309 (377)
T ss_dssp TSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSE
T ss_pred CCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcE
Confidence 111100 112 255677777888899988665223444555555555555544444 222111 112 223
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.|.+.... ++.+....+.+.|.++||.+.++.. ..+|+ ...++++|++++++.|++++++
T Consensus 310 vsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 310 IPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 555553210 0112224677888899999987632 23444 4667999999999999998764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=154.69 Aligned_cols=315 Identities=10% Similarity=-0.053 Sum_probs=175.6
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
.+.....++++.+++.++....+++++|+++++..++..+ ..++|.|++..+.|.....+.+...|..+...... ..
T Consensus 170 ~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~-~~ 246 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTN-RN 246 (730)
T ss_dssp TTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEE-EC
T ss_pred CChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCC-cc
Confidence 3456788999999999985556777776678998888766 34678888877665443332144444432211110 00
Q ss_pred CCCCCCCCcccccCCCCHHHH-----HHHHHcCCCC---e----EE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCE
Q 017633 110 GVPKGATYETLTAPFNDVSAL-----ENLFENNKGE---I----AA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 176 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~l-----e~~~~~~~~~---~----~~-~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~ 176 (368)
.+ +. ...+ |+++| ++++++++++ + ++ ++++|+ .+|.+.+ +++|+++|++||++
T Consensus 247 ~~----~i-~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g~~ 312 (730)
T 1c4k_A 247 PY----GF-IGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLCDY 312 (730)
T ss_dssp TT----CC-EEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGBSE
T ss_pred cc----Cc-cCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcCCe
Confidence 00 00 0001 55555 8888753101 2 44 444442 4788887 99999999999999
Q ss_pred EEEehhhhc-hhccc------CccccccCCC----cchhhhhhhccCCccc-eeeeehHHHH---------HHhcCCCCc
Q 017633 177 LIFDEVMTG-FRLAY------GGAQEYFGVT----PDLTTLGKIIGGGLPV-GAYGGRRDIM---------EMVAPAGPM 235 (368)
Q Consensus 177 li~De~~~~-~~~g~------~~~~~~~~~~----~di~s~sK~~~~G~~i-G~v~~~~~~~---------~~~~~~~~~ 235 (368)
|++||+|.. +..+. ....+.++.. .-+.|++|+++ |++. |+++++++.+ ..+.. ..
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~--~~ 389 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN--SF 389 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH--HH
T ss_pred EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH--HH
Confidence 999999953 21111 1111123432 22357899975 4444 4554433211 11110 01
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHH-H-HHhcCCceEE-------------------
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-A-GKKAGHAICG------------------- 291 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~~~~------------------- 291 (368)
....+.+++...+++..++++.+.. .++.++..++.+++++.|++ + ....-.+...
T Consensus 390 ~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 390 NLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 1223346677777777777776653 34677788888888888876 2 1010000000
Q ss_pred ------------ee--ccc-e-----EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCC
Q 017633 292 ------------GY--ISG-M-----FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAH 349 (368)
Q Consensus 292 ------------~~--~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~ 349 (368)
.+ .+. + +.+.. +.+..........+..+.+++++|.++||.+...+...++ ++...
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~--pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~ 547 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT--PGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAE 547 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEEC--SSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTC
T ss_pred hccCccchhccccccCCcccccCCeEEEEEe--CCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCC
Confidence 00 000 0 12221 0000000000001223578999999999999876544444 46777
Q ss_pred CHHHHHHHHHHHHHHHh
Q 017633 350 SSDDIQHTITAAEKVLR 366 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~ 366 (368)
+++++++++++|+++.+
T Consensus 548 t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 548 TPAKMNNLITQLLQLQR 564 (730)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=156.27 Aligned_cols=315 Identities=8% Similarity=-0.054 Sum_probs=182.6
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
+.....++++.+++.++..+.+++++|+++++..++..+ ..++|.|++..+.|+... ..+...|..+....... ..
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s~~-~~~~~~G~~~v~v~~~~-~~ 278 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKSIE-QGLMLTGAKPVYMVPSR-NR 278 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHHHH-HHHHHHCCEEEEECCCB-CT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHHHH-HHHHHcCCEEEEEeCCC-Cc
Confidence 456678888999998875566777776678899888766 356788888777655443 33444454432211110 00
Q ss_pred CCCCCCCcccccC--CCCHHHHHHHHHcCCCCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 017633 111 VPKGATYETLTAP--FNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180 (368)
Q Consensus 111 ~~~~~~~~~~~~~--~~d~~~le~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~D 180 (368)
+ +. .-.++ .-|+++++++++++++.. .+++++| +.+|.+.+ +++|+++|++||++|++|
T Consensus 279 ~----g~-~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livD 347 (755)
T 2vyc_A 279 Y----GI-IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFD 347 (755)
T ss_dssp T----SC-BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEE
T ss_pred c----cc-ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEE
Confidence 0 00 00000 017999999998642221 3455554 34788887 999999999999999999
Q ss_pred hhhhch-hcccCc-cccc-cC--CCc------chhhhhhhccCCcc-ceeeeehHH--HH--HHhcCCCCccccccCCCC
Q 017633 181 EVMTGF-RLAYGG-AQEY-FG--VTP------DLTTLGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 181 e~~~~~-~~g~~~-~~~~-~~--~~~------di~s~sK~~~~G~~-iG~v~~~~~--~~--~~~~~~~~~~~~~t~~~~ 244 (368)
|+|.+. ..+..+ .... .+ .+. -+.|++|+++ |++ .|+++++++ .+ ..+.. ......+.+++
T Consensus 348 eA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~--~~~~~~s~sp~ 424 (755)
T 2vyc_A 348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPL 424 (755)
T ss_dssp CTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHH--HHHHTSCSSCC
T ss_pred CcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHH--HHHHhCCCCHH
Confidence 999643 222110 0111 22 111 2347889876 444 566666433 11 11110 01122334677
Q ss_pred HHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHh--------cC--CceEEee------------------
Q 017633 245 PLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKK--------AG--HAICGGY------------------ 293 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~--------~~--~~~~~~~------------------ 293 (368)
.+.+++..++++.+..+ ++.++..++.++++++|+++... .. .+.....
T Consensus 425 ~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (755)
T 2vyc_A 425 YAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504 (755)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhcc
Confidence 88888888888877543 47888999999999999886431 00 0001100
Q ss_pred ---------------------cc------ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--
Q 017633 294 ---------------------IS------GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF-- 344 (368)
Q Consensus 294 ---------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~-- 344 (368)
.+ ..+.+.+....... .....+..+.++.++|.++||.+...+...++
T Consensus 505 ~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G---~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~ 581 (755)
T 2vyc_A 505 TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG---ELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFL 581 (755)
T ss_dssp HCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS---SBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEE
T ss_pred chhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC---CccccCCcHHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 00 11122221000000 00000223478889998999998765544443
Q ss_pred cccCCCHHHHHHHHHHHHHHHh
Q 017633 345 TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 345 ~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
++...+++++++++++|+++.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHH
Confidence 4667799999999999988753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=144.33 Aligned_cols=284 Identities=17% Similarity=0.157 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh---hcCCCccccCCCCC
Q 017633 33 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDS 108 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 108 (368)
+...+++++++++++ +.+++++++|++.+.+.++..++ ..++++|++..+.|+........ ..|..+..... .
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~--~ 184 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL--E 184 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC--B
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC--c
Confidence 456788999999887 55567888888855555543332 35678888877666544322211 13433322211 1
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehh-h-hch
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M-TGF 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~-~-~~~ 186 (368)
.+.. |+++ ++ +++++++++.. +++|.+.+ +++|+++|++||+++|+|-. + .+.
T Consensus 185 ~~~~-------------d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g~ 239 (438)
T 1wyu_A 185 GGRT-------------PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGV 239 (438)
T ss_dssp TTBC-------------CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGT
T ss_pred CCcc-------------CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhhccC
Confidence 1110 3332 33 46787777775 67888887 99999999999999996622 2 221
Q ss_pred hcccCccccccCCCcchhhh-hhhcc-----CCccceeeeehHHHHHHhcCCC----------C-c------------cc
Q 017633 187 RLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRDIMEMVAPAG----------P-M------------YQ 237 (368)
Q Consensus 187 ~~g~~~~~~~~~~~~di~s~-sK~~~-----~G~~iG~v~~~~~~~~~~~~~~----------~-~------------~~ 237 (368)
......++ +|++++ +|.|+ +|.++|++++++++++.+.... . + ..
T Consensus 240 ----~~~~~~~g--~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 240 ----LKPPGAYG--ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp ----BCCHHHHT--CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred ----cCCCccCC--CCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh
Confidence 11112233 465544 46532 4568999999988777653210 0 0 00
Q ss_pred cccCCC---CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchh
Q 017633 238 AGTLSG---NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 238 ~~t~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
..++.. +.+.+..+...+..+.+++ .+++.++...+++.+.+.+.+. ++.. ......+..+.+..
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~~~~~~--------- 382 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEG-LREVALKSVEMAHKLHALLLEVPGVRP-FTPKPFFNEFALAL--------- 382 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTCEE-CSCSSBCSEEEEEC---------
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEE-CCCCCeEEEEEEeC---------
Confidence 122222 2222222222244343222 2233333333444444433333 3321 11112222233321
Q ss_pred cccccHHHHHHHHHHHHcCeee--cCCC---CCccccc--cCCCHHHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTS--LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~--~~~~---~~~~~~~--~~~~~~~i~~~~~~l~~~l 365 (368)
+.+..++.+.|.++||.+ .++. ...+|++ ..++++|+++++++|++++
T Consensus 383 ----~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 383 ----PKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ----SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 112478999999999999 4442 3345554 4479999999999999875
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=148.42 Aligned_cols=313 Identities=8% Similarity=-0.039 Sum_probs=183.2
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
.+.....++.+.++++++....+++++|++.|+..++..+ ..++|.|++... .|.+...++...|......... ..
T Consensus 192 ~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al--~~pGD~VLv~r~-~H~S~~~~l~lsGa~pv~v~~~-~~ 267 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYS--APAGSTILIDRN-CHKSLTHLMMMSDVTPIYFRPT-RN 267 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESS-CCHHHHHHHHHSCCEEEEECCC-BC
T ss_pred CCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHh--CCCCCEEEECCC-ccHHHHHHHHHcCCEEEEEecc-cc
Confidence 3567788999999999975455555554468888887665 356777777655 4455555566666543321111 01
Q ss_pred CCCCCCCCcccccCCC------CHHHHHHHHHcCCCCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 017633 110 GVPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~------d~~~le~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~D 180 (368)
. +.++.+ |+++++++++++++.. .+++++| +.+|.+.+ +++|.++|++++ +++|
T Consensus 268 ~---------~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 268 A---------YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp T---------TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred c---------cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 1 111111 6999999998764322 3566666 56788888 999999998764 7999
Q ss_pred hhhhch-hcccCcc-ccc--cCCCcc-----hhhhhhhccCCccceeeeehHHH-HHHhcCCCCccccccCCCCHHHHHH
Q 017633 181 EVMTGF-RLAYGGA-QEY--FGVTPD-----LTTLGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTA 250 (368)
Q Consensus 181 e~~~~~-~~g~~~~-~~~--~~~~~d-----i~s~sK~~~~G~~iG~v~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a 250 (368)
|+|... ..+..+. ... .+..+| +.|++|++++--..|++++++++ .+.+.. ......+.+++++.+++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~As 408 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVAS 408 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHHH
Confidence 999532 2222111 111 121245 35789998642246777665432 111211 11223455788999999
Q ss_pred HHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhc-CCc-eE-----EeeccceE----------------EEEeec
Q 017633 251 GIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHA-IC-----GGYISGMF----------------GFFFTE 304 (368)
Q Consensus 251 ~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~-~~~-~~-----~~~~~~~~----------------~~~~~~ 304 (368)
..++++.+.. +++++++.++.++++++|+++.... ++. .. +.....+. .+.+.+
T Consensus 409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp 488 (715)
T 3n75_A 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (715)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence 9999988752 4578999999999999998874311 100 00 00000000 000111
Q ss_pred CC--Ccccchhccc----ccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHHHHHHHH
Q 017633 305 GP--VYNFEDAKKS----ETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 305 ~~--~~~~~~~~~~----~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
.+ +......... .+..+.++.++|.++||.+.-.....+. ++...+++++++++++|.++-
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 10 0000000000 0122467889999999999876544433 466779999999999988753
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=143.43 Aligned_cols=312 Identities=12% Similarity=0.006 Sum_probs=176.9
Q ss_pred CcHHHHHHHHHHHHcCCC---------C-C-CCChhHHHHHHHHHhhCC-C-CCeEEE-eCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGTS---------F-G-APCLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~---------~-~-~~~~~~~~l~~~l~~~~~-~-~~~v~~-~~~gt~a~~~al~~~~~~~~~ 75 (368)
-+|+|++++.+.+.+... + + ...+..++.++.++++++ + .++|+| ++|||++++.++.-. ..++
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l--~~~g 115 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL--LGDK 115 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc--cCCC
Confidence 578899999776643111 1 0 113456788889999887 3 357888 689999999999655 2456
Q ss_pred ceEEEEcCCCCCCchhhhhh-cCCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 76 ERIIKFEGCYHGHADPFLVK-AGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
+++++...+.+++....... .| .+.....+ ...+. .+ ++++++.+++ ++++++.+..+.+.+
T Consensus 116 d~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~---------~~---~~~~~~~~l~---~~t~lV~~~h~et~t 179 (386)
T 3qm2_A 116 TTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGK---------RA---VKPMREWQLS---DNAAYLHYCPNETID 179 (386)
T ss_dssp CEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTE---------EE---ECCGGGCCCC---TTCSCEEECSEETTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCC---------CC---CchHHHhhcC---CCCcEEEEECCcCCc
Confidence 77776655555542211111 12 11111110 00110 00 3455555554 467777777777777
Q ss_pred Ccc-cCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcC
Q 017633 154 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
|.+ .| +++|. +|+++++|-+++ .|. ...++.++ .++.+--|.+| ..++|++++++++.+.+..
T Consensus 180 G~~i~p----i~~i~-----~g~~~~vDa~qs---~g~~pidv~~~~--~~~~s~hK~lG-P~G~g~l~v~~~~~~~~~~ 244 (386)
T 3qm2_A 180 GIAIDE----TPDFG-----PEVVVTADFSST---ILSAPLDVSRYG--VIYAGAQKNIG-PAGLTLVIVREDLLGKAHE 244 (386)
T ss_dssp TEECCC----CCCCC-----TTCCEEEECTTT---TTSSCCCGGGCS--EEEEETTTTTC-CTTEEEEEEEGGGCSCCCT
T ss_pred CEecCc----hhhhc-----CCCEEEEEcccc---cCCCCCCccccC--EEEEecccccC-CCccEEEEECHHHHhhhcc
Confidence 885 66 66664 899999999996 332 34455554 24445559995 5578999888877544432
Q ss_pred CCCcc--------ccc-cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE---Ee-eccceE
Q 017633 232 AGPMY--------QAG-TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC---GG-YISGMF 298 (368)
Q Consensus 232 ~~~~~--------~~~-t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~-~~~~~~ 298 (368)
..+.. ... ..++|..+.+++.++++.+.+.+=.+.+.++.+.+.+.+.+.+.+.++... .. .....+
T Consensus 245 ~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv 324 (386)
T 3qm2_A 245 SCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNV 324 (386)
T ss_dssp TSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEE
T ss_pred cCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEE
Confidence 11111 011 114466677777788887755422344555555555555554444443111 11 112345
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+.+.. ...+ .++...|.++||.++.+.. ..+|+ ...++++|++++++.|+++.++
T Consensus 325 ~f~~~~------------~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 325 PFQLAD------------NTLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EEEESS------------GGGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCC------------cccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 555421 1223 5677778899999987632 23454 4566999999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=129.87 Aligned_cols=306 Identities=10% Similarity=-0.061 Sum_probs=177.0
Q ss_pred CcHHHHHHHHHHHHcCCC---------CCC--CChhHHHHHHHHHhhCC-C-CCeEEE-eCChHHHHHHHHHHHHHhcCC
Q 017633 10 SYLQVLAALGETMKKGTS---------FGA--PCLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGR 75 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~---------~~~--~~~~~~~l~~~l~~~~~-~-~~~v~~-~~~gt~a~~~al~~~~~~~~~ 75 (368)
-+|+|++++.+.+.+... +.. ..+..++.++.++++++ + .++|+| |+|||++++.++.-+. ++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 568899999887753111 111 12567788888999887 3 457888 9999999999997652 34
Q ss_pred ceEEEEcCCCCCCchhhh-hhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 76 ERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+++.....+.+++..... ...|..+.....+....+ .+ ++++ + ++ ++++++.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~---------~~---~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNF---------DH---IPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTS---------CS---CCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCC---------Cc---CChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 555333333444322211 111222222111111100 00 2222 2 44 3567777766666678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~ 231 (368)
.+.++ +++ +|+++++|.+++ .|. ...++. .|++++| |.+| ..++|++++++++.+.+..
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~---~g~~~id~~~----~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD---FFSRKVDFSN----IALFYGGVQKNAG-ISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG---TTSSCCCCTT----EEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHT
T ss_pred eeCCc---------ccc-cCCEEEEEcccc---cCCCCCCccc----CCEEEEechhccC-CCccEEEEEcHHHHhhhcC
Confidence 77652 333 499999999996 222 222222 4666655 9995 5578999999888776643
Q ss_pred -CCCcc--------cccc-CCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcC-CceEE--e--ecc
Q 017633 232 -AGPMY--------QAGT-LSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAG-HAICG--G--YIS 295 (368)
Q Consensus 232 -~~~~~--------~~~t-~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~--~--~~~ 295 (368)
..+.. ...+ .++|..+.+++.++++.+.+. ++ +.+.++.+.+.+.+.+.+.+.+ +.... . ...
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~-~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~ 295 (361)
T 3m5u_A 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGL-DKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSL 295 (361)
T ss_dssp CCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCS
T ss_pred CCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCC
Confidence 11111 0112 345677788888999988765 43 4455555555555555544444 21111 1 112
Q ss_pred ceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--Ccccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 296 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--~~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+.+.+... ...+ .++...|.++||.++.+.. ..+|+ ...++++|++++++.|+++.++
T Consensus 296 ~ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 296 MNVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp SEEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 3445554210 0122 4678889999999987632 23444 4566999999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-14 Score=126.49 Aligned_cols=290 Identities=12% Similarity=0.037 Sum_probs=165.3
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHhc--CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC
Q 017633 48 SIEMVRFVNSGTEACMGVLRLARAFT--GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 125 (368)
Q Consensus 48 ~~~~v~~~~~gt~a~~~al~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (368)
.....++++++|.++..++..+.... +++.||+ +.+-|.+...++.+.|....+..-. .+. +...+
T Consensus 133 ~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~-~d~-------~~~~i--- 200 (501)
T 3hl2_A 133 TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENV-LEG-------DELRT--- 200 (501)
T ss_dssp TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEE-EET-------TEEEE---
T ss_pred CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeee-ecc-------cccCC---
Confidence 45568888877777777776554431 3466666 8899999999998887754332110 000 00111
Q ss_pred CHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCC-cc
Q 017633 126 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT-PD 202 (368)
Q Consensus 126 d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~-~d 202 (368)
|++++|++|++++ +.+.+++..+.+.-++...+ +++|+++|++||+++++||||... .....+....+... .|
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 8999999999864 45556655554433334455 999999999999999999999433 21111111222232 67
Q ss_pred hhhhh--hhccCCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHH
Q 017633 203 LTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQ 276 (368)
Q Consensus 203 i~s~s--K~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~ 276 (368)
+++.| |.+-..++.+.++. ++++++.+...-+ ++-+.+ ..+..+.++..+.. .++.++..++.+++++
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP----Gr~S~S--psldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~ 350 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----GRASAS--PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSN 350 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----SCBCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHHHHhCC----CCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666 77653333333333 5666666542111 111112 22222223333322 4467888899999999
Q ss_pred HHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcC---eeecCCCC------------
Q 017633 277 GIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG---VYFAPSQF------------ 340 (368)
Q Consensus 277 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G---i~~~~~~~------------ 340 (368)
.|+++....+... ..+....-+++.+.... . .......++-..|..++ -.+.+.+.
T Consensus 351 ~L~~la~~~ge~ll~~~~n~is~a~tl~~~~--~------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~ 422 (501)
T 3hl2_A 351 QIKKLSEAYNERLLHTPHNPISLAMTLKTLD--E------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGF 422 (501)
T ss_dssp HHHHHHHTTTCCBCCCTTCSSEEEEECTTSC--T------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESST
T ss_pred HHHHHHHhcChhhcCCCCCceeEEEeccccc--c------cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCc
Confidence 9999876555321 22111122333332210 0 11223456777777773 33322211
Q ss_pred C-------cccc----ccCCCHHHHHHHHHHHHHHHhh
Q 017633 341 E-------AGFT----SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 341 ~-------~~~~----~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
. .-++ ...++++|++.++++|++.+.+
T Consensus 423 g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 423 MSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0011 3677999999999999999854
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-14 Score=125.97 Aligned_cols=231 Identities=15% Similarity=0.055 Sum_probs=136.1
Q ss_pred hHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHH-HHHHHhc-CCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCC
Q 017633 34 LENVLAEMVISAVP--SIEMVRFVNSGTEACMGVL-RLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDS 108 (368)
Q Consensus 34 ~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al-~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (368)
....+..++.+.++ .....++++++|.+...++ ..++... +++.||+. ..-|.+...++.+.|.+...... +..
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~~ 177 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLEG 177 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeecC
Confidence 44466666666555 4456688888875555554 5554322 24555554 67999999888888775433211 000
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
+ ...+ |+++|+++|++++ +.+.+++..|.+..+|..-+ +++|+++|++||++|++|++|...
T Consensus 178 ~---------~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 178 D---------ELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp T---------EEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred c---------cCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 0 0111 8999999998764 46777888777665566666 999999999999999999999543
Q ss_pred hcccCccccccCC-Ccchhhhh--hhccCCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC
Q 017633 187 RLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262 (368)
Q Consensus 187 ~~g~~~~~~~~~~-~~di~s~s--K~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~ 262 (368)
+.........+.. ..|++++| |.+......++++. +++..+.+.. .+.+ +-+.++ +.. ....+..+..+.
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g-~~s~Sp-sL~-l~~~l~~~G~~g 315 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG-RASASP-SLD-VLITLLSLGCSG 315 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS-CBCSHH-HHH-HHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhhc-CCcccH-HHH-HHHHHHHHHHHH
Confidence 2111111111211 34666555 88876667777765 5555555542 1111 111122 222 222222222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 017633 263 ---TYEYLNKITGELTQGIIDAGKKAGH 287 (368)
Q Consensus 263 ---~~~~~~~~~~~l~~~l~~~~~~~~~ 287 (368)
+.++..+..+++++.++++...++.
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~ 343 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNE 343 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 3444577788889999887655553
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=103.54 Aligned_cols=310 Identities=15% Similarity=0.086 Sum_probs=165.7
Q ss_pred CcHHHHHHHHHHHHcC-------CCCCCCCh----hHHHHHHHHHhhCC-CCC-e--EEEeCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKG-------TSFGAPCL----LENVLAEMVISAVP-SIE-M--VRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-------~~~~~~~~----~~~~l~~~l~~~~~-~~~-~--v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|.|++++...+.+- ..|+..++ .+.-..++..++|+ +.. + =+-..||++|+..+...+ ..+
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al--l~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CC-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH--cCC
Confidence 4566666666555441 11222233 22233344555666 333 2 244568999999998766 467
Q ss_pred CceEEEEcCCCCCCchhhhh-------hcCCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE
Q 017633 75 RERIIKFEGCYHGHADPFLV-------KAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 145 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~ 145 (368)
+|.|+..+....|+...... ..+......+| ....+. + |.+++++...++ ++++++
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~----------I---Dyd~~~~~A~~~--kPklIi 208 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGL----------I---DYNQLALTARLF--RPRLII 208 (490)
T ss_dssp CCCEECBC----------------------------CBCEETTTTE----------E---CHHHHHHHHHHH--CCSEEE
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCc----------c---cHHHHHHHHhhc--CCCeEE
Confidence 89999988776666443211 11111111001 001111 1 899999999876 677887
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeee
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 221 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~ 221 (368)
+-... .-...+ +++++++|++.|.+|++|-+| +|+ -.|..- +.+.. .|++|.| |+|. |.|.|.+++
T Consensus 209 ~G~Sa--Y~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p--sP~~~-ADvVTtTTHKTLr-GPrGG~Il~ 278 (490)
T 3ou5_A 209 AGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFKH-ADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC--CGGGT-CSEEEEESSSTTC-SCSCEEEEE
T ss_pred ECCcc--CccccC----HHHHHHHHhhcccEEEechhhhhhhhcccccC--Ccccc-ceEEecccccccc-CCCceEEEe
Confidence 75443 333455 999999999999999999999 777 433321 11222 4777666 8775 558888887
Q ss_pred hH---------------HHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHH
Q 017633 222 RR---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 222 ~~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 282 (368)
++ ++.+.+... -+..++ ++.....++...++....+ .++.+.+.++++.+.+.|.+.
T Consensus 279 ~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qg---gp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~- 354 (490)
T 3ou5_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQG---GPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER- 354 (490)
T ss_dssp ECSEEEECC--CCEEECCCHHHHHHHHTTTTCS---SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccccccccccccchhHHHHHHHHHhhcCccccc---cchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-
Confidence 65 233333310 011222 2223343333334443222 335666777777777777664
Q ss_pred HhcCCceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecC----CC-CC----cccc------c
Q 017633 283 KKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ-FE----AGFT------S 346 (368)
Q Consensus 283 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~~-~~----~~~~------~ 346 (368)
++..... ...+++.+++... ..+..+..+.|.+.||.+-- +. .+ .+|+ +
T Consensus 355 ---G~~vvsGgTdnHlvLvDl~~~------------g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~Tt 419 (490)
T 3ou5_A 355 ---GYSLVSGGTDNHLVLVDLRPK------------GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp ---TCEEGGGSCSSSEEEEECGGG------------TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred ---CCeeecCCCCceEEEEecccc------------CCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHh
Confidence 4322111 2234667776532 22346677777788998853 21 11 1232 3
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 017633 347 LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l~~~l 365 (368)
..+.++|++++.+.|.+++
T Consensus 420 RG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 420 RQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5678899988888887766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 368 | ||||
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 1e-103 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 8e-52 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 2e-45 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 5e-45 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-43 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 5e-25 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 5e-23 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 5e-13 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 5e-13 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-11 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 2e-08 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-06 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 3e-06 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 5e-06 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 6e-06 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 1e-05 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 309 bits (792), Expect = e-103
Identities = 258/355 (72%), Positives = 300/355 (84%)
Query: 14 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73
V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL RA+T
Sbjct: 73 VIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT 132
Query: 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 133
GR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ L
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKAL 192
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 193
F N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG
Sbjct: 193 FAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGV 252
Query: 194 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 253
QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 253 QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIK 312
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDA
Sbjct: 313 TLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDA 372
Query: 314 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
KKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 373 KKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 176 bits (446), Expect = 8e-52
Identities = 94/371 (25%), Positives = 144/371 (38%), Gaps = 24/371 (6%)
Query: 14 VLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRL 68
V+AA+ +KK + L E++ VP V +G+EA +++
Sbjct: 61 VVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI 120
Query: 69 ARAFTGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKGATYETLTA 122
ARA T R I F G YHG L G +G+ + + +
Sbjct: 121 ARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 180
Query: 123 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 182
+ +IAAI++EPV G GF A P F+ +R + E+G +LI DEV
Sbjct: 181 DAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEV 240
Query: 183 MTG-FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 241
+G R A E GV PDLTT K I GG P+ GR ++M+ VAP G GT
Sbjct: 241 QSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTY 297
Query: 242 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301
+GNP+A A + LK ++ + N + +L G++ +K + M
Sbjct: 298 AGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE 357
Query: 302 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAHSSDDIQHT 357
E +N DAK A ++G+ L I+
Sbjct: 358 LFEDGDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 412
Query: 358 ITAAEKVLRQI 368
+ + +
Sbjct: 413 LEIISQCFDEA 423
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (401), Expect = 2e-45
Identities = 77/358 (21%), Positives = 139/358 (38%), Gaps = 22/358 (6%)
Query: 14 VLAALGETMKKGTSFGAPCLLENV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
++ AL + K T + E I+ + + V +N+G EA +LAR +
Sbjct: 62 IVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKW 121
Query: 73 TGRERIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 131
+ I+ + A F + S +++ P S P+ND+ ALE
Sbjct: 122 GYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALE 181
Query: 132 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 190
++ +AA ++EP+ G +G + P P +L +R + + L I DE+ TG R
Sbjct: 182 RALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR 239
Query: 191 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 250
A +Y V PD+ LGK + GGL + D + + P T GNPL
Sbjct: 240 WLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRV 297
Query: 251 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 310
I L+ L+E E +K+ L ++ A+ G +
Sbjct: 298 AIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRG--KGLLNAIVI-------- 347
Query: 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 366
K+++ + + + G+ P+ + + L D+++ +I K +
Sbjct: 348 ---KETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 402
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 157 bits (398), Expect = 5e-45
Identities = 73/366 (19%), Positives = 130/366 (35%), Gaps = 33/366 (9%)
Query: 14 VLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+L A+ K T A + + E ++ + + V +N+G EA +L R +
Sbjct: 60 ILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKW 119
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDV 127
+ + SG + S + + P++D+
Sbjct: 120 GYE----VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL 175
Query: 128 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186
ALE ++ + A I+EP+ G +G I P ++L + I K+ L + DEV TG
Sbjct: 176 EALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLG 233
Query: 187 RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245
R ++ V PD+ LGK + GG P+ A DIM ++ P T GNP
Sbjct: 234 RTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNP 290
Query: 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFF 302
LA + + L L E K+ G + + K + + G + F
Sbjct: 291 LAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEF 347
Query: 303 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 362
V + K + R + ++ + P L + + +
Sbjct: 348 KNELVNVLDICLKLKENGL--ITRDVHDKTIRLTP--------PLCITKEQLDECTEIIV 397
Query: 363 KVLRQI 368
K ++
Sbjct: 398 KTVKFF 403
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 153 bits (387), Expect = 1e-43
Identities = 93/360 (25%), Positives = 145/360 (40%), Gaps = 39/360 (10%)
Query: 14 VLAALGETMKK--GTSFGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLAR 70
V+ A+ + P + + + +P F SGTEA L+ AR
Sbjct: 58 VVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFAR 117
Query: 71 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 130
A TGR++ + + G L + + P P V P+NDV AL
Sbjct: 118 AHTGRKKFVAAMRGFSGRTMGSL--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEAL 170
Query: 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189
+ + E AA+ILEPV G G P+FL A R IT+E GALLI DE+ TG R
Sbjct: 171 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 190 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
A E+FG+ PD+ TL K +GGG+P+G R ++ + G T GNPLAM
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMA 284
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AG+ ++ L+ +E ++ + + + G G+
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRG---MGLMVGLE------- 334
Query: 310 FEDAKKSETTKFARFYRGML----EEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 365
++ + + +R + + F P L +D++ + A VL
Sbjct: 335 LKEKAAPYIARLEKEHRVLALQAGPTVIRFLP--------PLVIEKEDLERVVEAVRAVL 386
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 103 bits (256), Expect = 5e-25
Identities = 82/377 (21%), Positives = 141/377 (37%), Gaps = 32/377 (8%)
Query: 14 VLAALGETMKKGTSFGAPCLLENV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 70
+++ +GE K + L V LA + + P ++ +++G E+ +R+A+
Sbjct: 62 IVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK 121
Query: 71 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS-- 128
TG+ I+ F +HG S P + G T F
Sbjct: 122 LVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAY 181
Query: 129 --------ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 180
A + + + G +AA I EP++ + G I ++ A++R + G LLI D
Sbjct: 182 DYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 241
Query: 181 EVMTG-FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 239
E TG R A + GVTPD+ TL K +G GLP+ A I E A
Sbjct: 242 EAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYT 300
Query: 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG--- 296
T +PL G+ L ++ G N + L +G++D ++ G + G
Sbjct: 301 THVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCI---GDVRGRGL 357
Query: 297 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT------SLAHS 350
+ G + K+ A+ R + G+ Q L S
Sbjct: 358 LLGVEIVKDR-----RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVS 412
Query: 351 SDDIQHTITAAEKVLRQ 367
D+I ++ + + +
Sbjct: 413 EDEIDLGLSLLGQAIER 429
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 97.4 bits (241), Expect = 5e-23
Identities = 85/377 (22%), Positives = 144/377 (38%), Gaps = 42/377 (11%)
Query: 14 VLAALGETMKKGT--SFGAPC--LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
+ AA+ + + FG + ++V +E V +SG+ A +++A
Sbjct: 64 LNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMA 123
Query: 70 RAFTG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGL-----PDSPGVPKGATYET 119
+ R+R + F YHG + + L P++ P +
Sbjct: 124 LQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMD 183
Query: 120 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF-IAPKPDFLNAIRRITKENGALLI 178
D+ L ++ EIAA+I+EP+V +G P++L IR+I G LLI
Sbjct: 184 GEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243
Query: 179 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGP 234
DE+ TGF R A E+ + PD+ LGK + GG + + A R++ E ++ AG
Sbjct: 244 ADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGC 303
Query: 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294
T GNPLA A +L L+ + + I +L + + A + +
Sbjct: 304 FMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRV 361
Query: 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAH 349
G G T PV A + +E+GV+ P G
Sbjct: 362 LGAIGVVETTHPV------------NMAALQKFFVEQGVWIRP----FGKLIYLMPPYII 405
Query: 350 SSDDIQHTITAAEKVLR 366
+Q A + ++
Sbjct: 406 LPQQLQRLTAAVNRAVQ 422
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 67.1 bits (162), Expect = 5e-13
Identities = 56/363 (15%), Positives = 91/363 (25%), Gaps = 42/363 (11%)
Query: 13 QVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ A+ + +G LE + AE E FV SGT +
Sbjct: 15 EMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSIMAH 69
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
+ + +A L VP +
Sbjct: 70 TQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKAI-- 119
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
+ + I +E SG + + I I KE+G + D
Sbjct: 120 --RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 177
Query: 190 --YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 247
+EY G + G RD +E A M G LA
Sbjct: 178 ASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLA 237
Query: 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307
I K K E + + K+ G+++ + T+
Sbjct: 238 AAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK 290
Query: 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVL 365
N F + GV T S +DI+ + EK+
Sbjct: 291 VNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLF 339
Query: 366 RQI 368
R+
Sbjct: 340 RKF 342
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 67.6 bits (164), Expect = 5e-13
Identities = 42/375 (11%), Positives = 90/375 (24%), Gaps = 51/375 (13%)
Query: 34 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG 87
L + + + + G A + + R +++ F +
Sbjct: 79 LAESVKNIF-----GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 88 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-ENNKGEIAAIIL 146
G V + + ++ ++ D+ LE E + I+
Sbjct: 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEVGPNNVPYIVA 189
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLAYGGAQEYFGV 199
++G L A+ I K+ ++ D R A +
Sbjct: 190 TITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249
Query: 200 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAGTLSGNPLAMT 249
T + ++ A ++ M + Q G + L
Sbjct: 250 TRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG 309
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG---FFFTEGP 306
A L + ++L Q ++D ++ G F P
Sbjct: 310 AMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIP 368
Query: 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG-------------FTSLAHSSDD 353
F + R + E G + + G ++
Sbjct: 369 ADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTH 427
Query: 354 IQHTITAAEKVLRQI 368
+ I A + V
Sbjct: 428 MDFIIEAFKHVKENA 442
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 43/369 (11%), Positives = 91/369 (24%), Gaps = 42/369 (11%)
Query: 34 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHAD 90
L++ E+ + + + + G A + + + G+ + F +H
Sbjct: 80 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTT 134
Query: 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150
V+ A + + + + + ++ I AI+
Sbjct: 135 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTC 192
Query: 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG--------------AQEY 196
++G L + I K++G ++ D + +
Sbjct: 193 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 252
Query: 197 FGVTPDLTTLGKIIGGGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGI 252
+ LT K G R + I + + G M A +
Sbjct: 253 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 312
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
L+ E Y L + +AG + G + + P F
Sbjct: 313 QGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPA 372
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTIT 359
R + E G + G A D + +
Sbjct: 373 QAVINALYLESGVRAV-EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIAD 431
Query: 360 AAEKVLRQI 368
A + +
Sbjct: 432 ALIGLKEKF 440
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (126), Expect = 2e-08
Identities = 55/342 (16%), Positives = 102/342 (29%), Gaps = 49/342 (14%)
Query: 51 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110
VRF+ ++ + + AF G E I + C+ + F G+ A + +
Sbjct: 81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHA 140
Query: 111 -------VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163
+ K Y ++ A I + V G I L
Sbjct: 141 SIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVI----ANL 196
Query: 164 NAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKIIGGGLPVGA 218
+ + + AL++ D+ + G EY V +T GG G
Sbjct: 197 KGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGY 256
Query: 219 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
R++++E + Y + + + L + + +
Sbjct: 257 TAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQM 316
Query: 279 IDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 335
AG A HAI I M G + +F R + +EG+Y
Sbjct: 317 SAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARELQKEGIYV 355
Query: 336 APSQFEAG---------FTSLAHSSDDIQHTITAAEKVLRQI 368
+ S AH+ + I + A ++ +Q+
Sbjct: 356 TGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 46.8 bits (110), Expect = 2e-06
Identities = 38/340 (11%), Positives = 88/340 (25%), Gaps = 24/340 (7%)
Query: 32 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 208
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 209 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 267
+ + G Y + ++ ++ + P + T N L + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVS---LLSMGSKNYLELVKNQ 335
Query: 268 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 327
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 328 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 364
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 46.5 bits (109), Expect = 3e-06
Identities = 36/331 (10%), Positives = 81/331 (24%), Gaps = 39/331 (11%)
Query: 51 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110
V+ + + + G R + F + + S
Sbjct: 74 GSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHA 133
Query: 111 VPKGATYET----LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166
A + NDV+ L L + ++ E V G AP +
Sbjct: 134 SLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEI---- 189
Query: 167 RRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRD 224
+++T+++ L+ D+ + G+ V P+L + G G+ A
Sbjct: 190 QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSST 249
Query: 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 284
+ + + T + + + + L +
Sbjct: 250 VADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307
Query: 285 AGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 342
+ I + V + A + + ++G + +
Sbjct: 308 LPFTLADSCSAIQPLI--------VGDNSRALQ--------LAEKLRQQGCWVTAIRPPT 351
Query: 343 G---------FTSLAHSSDDIQHTITAAEKV 364
+ AH DI +
Sbjct: 352 VPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 45.8 bits (107), Expect = 5e-06
Identities = 60/417 (14%), Positives = 104/417 (24%), Gaps = 95/417 (22%)
Query: 14 VLAALGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNSGTEACMGV 65
++ + + T P L L E ++S A + + + G+ +
Sbjct: 74 LVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 133
Query: 66 LRLARAF--------------------------TGRERIIKFEGCYHGHADPFLVKAGSG 99
+ + I+ F G +HG L S
Sbjct: 134 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 193
Query: 100 VATLGLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENNKGEIAAII 145
S P + +V L + K +A II
Sbjct: 194 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 253
Query: 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD 202
+EP+ G DF +R I++++G + DEV TG + D
Sbjct: 254 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 313
Query: 203 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 262
+ T K + G E P P T G+P + +K
Sbjct: 314 VMTFSKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 365
Query: 263 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETT 319
L G++D + I + G F + + N
Sbjct: 366 LLSNAAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN---------- 413
Query: 320 KFARFYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 366
+ +GV F P +L + +L
Sbjct: 414 ---KLISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIFSDILA 459
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 45.2 bits (105), Expect = 6e-06
Identities = 42/358 (11%), Positives = 71/358 (19%), Gaps = 39/358 (10%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V AL + L + V V +GT A L
Sbjct: 18 EVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPP 77
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
G + + +
Sbjct: 78 WGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVRLRERTR 126
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
+ + D + AI + K + L D L G
Sbjct: 127 EKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG 186
Query: 193 ---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
A+ + D + G G L A + S
Sbjct: 187 CSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSA 246
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
L N L QG+ G + GG + +
Sbjct: 247 QIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLDS----- 298
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTITAAEK 363
+L+ G F ++ TS A +++D+ H +
Sbjct: 299 -------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRL 343
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.4 bits (103), Expect = 1e-05
Identities = 39/341 (11%), Positives = 89/341 (26%), Gaps = 35/341 (10%)
Query: 33 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 92
+ N L + + ++ R N EA V+ + ++ + + H +
Sbjct: 51 FIHNQLPKFL-----GCDVARVTNGAREAKFAVM---HSLAKKDAWVVMDENCHYSSYV- 101
Query: 93 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVV 150
+ E K GE+ ++
Sbjct: 102 -----------AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPD 150
Query: 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII 210
GN G + ++ E L+ + R+ + K +
Sbjct: 151 GNYGNLPDVKKI----AKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGH--KSM 204
Query: 211 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
P+G G + + E+V Y+ + P E + +
Sbjct: 205 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRW 264
Query: 271 TGE--LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 328
E + +K G G FF + K YR +
Sbjct: 265 DEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFH---AEVLYEISKKAKGGRFFLYREL 321
Query: 329 LEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 367
++ F ++ S +++ + + A ++++ +
Sbjct: 322 KSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 368 | |||
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.97 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.97 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.97 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.97 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.97 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.96 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.96 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.96 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.96 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.95 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.94 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.93 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.93 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.92 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.92 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.92 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.91 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.9 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.9 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.89 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.88 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.87 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.87 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.86 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.86 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.85 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.84 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.83 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.8 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.8 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.78 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.78 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.78 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.77 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.77 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.76 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.75 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.74 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.74 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.73 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.73 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.73 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.72 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.71 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.7 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.7 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.68 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.67 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.65 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.64 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.64 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.62 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.61 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.57 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.55 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.53 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.49 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.46 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.45 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.41 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.26 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.21 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.08 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.08 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=2e-53 Score=388.88 Aligned_cols=365 Identities=71% Similarity=1.165 Sum_probs=323.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++++||++|+|.+++++++++......+......+++.+.+..+..+.++|++||++|++.|+++++.++++.+||.+.+
T Consensus 63 ~~~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~ 142 (427)
T d2gsaa_ 63 PAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEG 142 (427)
T ss_dssp TTTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETT
T ss_pred HHhccCCcHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 57899999999999999999876666777888899999999988889999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|||.+..++..++.+.....+|...++......+....+++|++++|+.+++++++++++++||+.+++|.+.+|++|+
T Consensus 143 ~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l 222 (427)
T d2gsaa_ 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHH
T ss_pred ccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHH
Confidence 99999998888877765554555555555555667777888999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCC
Q 017633 164 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 243 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~ 243 (368)
++|+++|++||++||+||+++||+.|..+..+++++.||+++++|++++|+++|.+++++++++.+...+...+++||++
T Consensus 223 ~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~g 302 (427)
T d2gsaa_ 223 EGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSG 302 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCC
Confidence 99999999999999999999999778889999999999999999999999999999999999998886666788899999
Q ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHH
Q 017633 244 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 323 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (368)
|++++++++++++.+.++++.+++.++.+++++.|+++..+.+....+.+.+.+.++.+...++.++...+..+......
T Consensus 303 npla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~ 382 (427)
T d2gsaa_ 303 NPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSR 382 (427)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHH
T ss_pred CchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHH
Confidence 99999999999999998899999999999999999999988887777888888888888766666655544444455677
Q ss_pred HHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 324 FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 324 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+...|+++||++.|++....++++.+|++||++++++++++++++
T Consensus 383 ~~~~ll~~Gv~l~p~~~~~~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 383 FHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCEEECCCCCcceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 889999999999998765556789999999999999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-47 Score=349.18 Aligned_cols=351 Identities=26% Similarity=0.350 Sum_probs=289.6
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC---CCCCChhHHHHHHHHHhhCCC--CCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
++++||++|+|.+++.++++++.. ...+++...++++.+.+..++ .+.+++++||++|++.|+++++.++++.++
T Consensus 51 ~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~i 130 (425)
T d1sffa_ 51 VLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGT 130 (425)
T ss_dssp TCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccce
Confidence 568999999999999999988543 345578889999999999973 579999999999999999999999999999
Q ss_pred EEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC----------CHHHHHHHHH--cCCCCeEEEEE
Q 017633 79 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFE--NNKGEIAAIIL 146 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~~~--~~~~~~~~~~~ 146 (368)
|.+.++|||.+...+..++.............. .....+.. .....++.+. ...++++++++
T Consensus 131 i~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~ 204 (425)
T d1sffa_ 131 IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPG------HVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 204 (425)
T ss_dssp EEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCS------SEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred EeecCCCcCccccchhhcCCCCcccCCcccccC------CccccCCccccccccchhhHHHHHHHHHhcccccceEEEEe
Confidence 999999999999998887764322211111100 11111110 0112222222 23467999999
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHH
Q 017633 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 147 ~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~ 225 (368)
||+.+++|...++++|+++|.++|++||++||+||+++|| |+|..++++++++.||++++||++++|+|+|.+++++++
T Consensus 205 EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i 284 (425)
T d1sffa_ 205 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEV 284 (425)
T ss_dssp CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHH
T ss_pred cCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCCcceEEEEEcHHH
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecC
Q 017633 226 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305 (368)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (368)
++.+. ...+++||+++++++++++++++.++++++.++.....+++++.++++..+++.+..+.+.|.++++.+...
T Consensus 285 ~~~~~---~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~ 361 (425)
T d1sffa_ 285 MDAVA---PGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFED 361 (425)
T ss_dssp HTTSC---TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGG
T ss_pred HHhhC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEecc
Confidence 98887 445789999999999999999999999999999999999999999999999998889999999999998653
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--c--cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--A--GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~--~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
..... ++......+.+.|+++||++.+.+.. . +.|++.++++|+++++++++++++++
T Consensus 362 ~~~~~-----~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 362 GDHNK-----PDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp GCTTS-----BCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCC-----ccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 22111 23345678999999999999876532 2 34688999999999999999999763
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-47 Score=342.36 Aligned_cols=334 Identities=28% Similarity=0.353 Sum_probs=286.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
+++|||+||+|.+++.+++++.... .++++...++++.+.+..+ +.+++++++||++|++.|+++++.++++.+|+.
T Consensus 48 ~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~ 127 (387)
T d1vefa1 48 VANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVA 127 (387)
T ss_dssp TCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecc
Confidence 4679999999999999999985433 3467888899999998887 568899999999999999999999999999999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
+.++|||.+..+...++.+.....+.+ ...++..+|++|++.+++.+. ++++++++||+.+++|...+++
T Consensus 128 ~~~~yHG~t~~~~~~s~~~~~~~~~~p-------~~~~~~~~p~~d~~~l~~~~~---~~iAavi~EPi~g~~G~~~~~~ 197 (387)
T d1vefa1 128 AMRGFSGRTMGSLSVTWEPKYREPFLP-------LVEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATP 197 (387)
T ss_dssp ETTCCCCSSHHHHHTCCCHHHHGGGCS-------CSSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCH
T ss_pred cccCCCCCccceEeccCCccccCCCCC-------CCCCceEeCCCCHHHHHHhcC---CCeEEEEEECCCCCCCCccCCH
Confidence 999999999998888876543322211 122466788999999999886 5899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 239 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~ 239 (368)
+|+++++++|++||++||.||+++|| |.|..+..+++++.||++++||++++|++++.++..++.++.+. ...+++
T Consensus 198 ~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~---~~~~g~ 274 (387)
T d1vefa1 198 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMP---KGGHGT 274 (387)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSC---TTSSCC
T ss_pred HHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCCccccccccceeeeeccc---cCCccc
Confidence 99999999999999999999999999 99999999999999999999999999999999999998888776 456889
Q ss_pred cCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccH
Q 017633 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 319 (368)
Q Consensus 240 t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
||++||++++++.+.++.+.++++.+++.++.+++++.|+++. .+....+++.|.+.++++...
T Consensus 275 T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~--~~~v~~vrg~Gl~~~ie~~~~-------------- 338 (387)
T d1vefa1 275 TFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK-------------- 338 (387)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC--------------
T ss_pred cCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcC--CCceEEEeecceEEEEEEeCC--------------
Confidence 9999999999999999999888899999999999999998753 244567889999999988432
Q ss_pred HHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHh
Q 017633 320 KFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 320 ~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
....+.+.++++|+.+.+.+...+ .|++.+|++|+++++++++++|.
T Consensus 339 ~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 339 AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHhC
Confidence 135677778889988877654443 46899999999999999999873
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2.2e-46 Score=343.18 Aligned_cols=359 Identities=21% Similarity=0.254 Sum_probs=287.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCC--CCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 4 LIILFPSYLQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
++++||++|+|.+++.+++++..+ ..++++...+++++|.+..+ +.+.++|++|||+|++.|+++++.++++++|+.
T Consensus 52 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~ 131 (431)
T d1zoda1 52 SAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVG 131 (431)
T ss_dssp TCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceee
Confidence 568999999999999999998643 24567888999999999986 689999999999999999999999999999999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCccccc------CCC---CHHHHHHHHH-cCCCCeEEEEEcccC
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA------PFN---DVSALENLFE-NNKGEIAAIILEPVV 150 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---d~~~le~~~~-~~~~~~~~~~~~~~~ 150 (368)
+.++|||.+..++..++........+...+...........- ... +++.++..+. .++++++++++||+.
T Consensus 132 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~ 211 (431)
T d1zoda1 132 FAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPIL 211 (431)
T ss_dssp ETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEE
T ss_pred cccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeecccc
Confidence 999999999888877765432222222221111000000000 001 2333433333 355789999999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHh
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
+++|.+.++++|+++|+++|++||++||.||+++|| |+|..+..+++++.||+++++|++++|++++.+++.++..+..
T Consensus 212 g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~ 291 (431)
T d1zoda1 212 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERA 291 (431)
T ss_dssp TTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHH
T ss_pred ccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccccccceeeeeecchhhh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999998888776665
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.. ....+++|++.++++++++.++++.++++++.++..+..+++.+.+.++..+++.+..+++.|.++.+++.......
T Consensus 292 ~~-~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~ 370 (431)
T d1zoda1 292 HE-LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTK 370 (431)
T ss_dssp HH-TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTT
T ss_pred hc-ccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCccc
Confidence 42 23456789999999999999999999999999999999999999999999999988899999999999886422111
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeec----CCCCCc--cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFA----PSQFEA--GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~~--~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.+.......+.+.++++|+... ++.... +.|++++|++|+++++++|+++++++
T Consensus 371 -----~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 371 -----EPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp -----EECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1122346778999999997532 233333 35689999999999999999999874
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-46 Score=337.78 Aligned_cols=339 Identities=22% Similarity=0.286 Sum_probs=284.7
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc--------
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-------- 73 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-------- 73 (368)
.+++||++|+|++++.+++++.... .+.+....++++.+++.. +.+.+++++||++|++.|+++++.+.
T Consensus 52 ~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~ 130 (404)
T d2byla1 52 AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQK 130 (404)
T ss_dssp TCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-cccccccccCccccchhHHHHHHHHhhhcccccc
Confidence 4679999999999999999885433 234455666777776654 56799999999999999999998653
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.+..++.+.++|||.+...+...+.+.....+. .....+..+|++|++++++.+.. ++++++++||+.+++
T Consensus 131 ~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~-------p~~~~~~~~p~~d~~~l~~~l~~--~~iAaviiEPi~g~~ 201 (404)
T d2byla1 131 YKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG-------PFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201 (404)
T ss_dssp TCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSC-------SCCTTEEEECTTCHHHHHHHHTS--TTEEEEEECSSBTTT
T ss_pred ccccccccCCCccccccceeccCCCcccccCCC-------CCCCCeeEecccCHHHHHHhcCC--CCeEEEEECCccCCC
Confidence 456899999999999998888877654433221 11234667888999999999974 589999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~ 231 (368)
|.+.++++|+++|+++|++||++||+||+++|| |+|..++++++++.||++++||++++| +++|.+++++++.+.+.
T Consensus 202 G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~- 280 (404)
T d2byla1 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK- 280 (404)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC-
T ss_pred CCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccC-
Confidence 999999999999999999999999999999999 999999999999999999999999987 79999999999988876
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccc
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (368)
...+++||++|+++++++.++++.++++++.++..++.+++++.|.++. ......+++.|.+..+.+...
T Consensus 281 --~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~------ 350 (404)
T d2byla1 281 --PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKET------ 350 (404)
T ss_dssp --TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCC------
T ss_pred --CCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecC------
Confidence 4568899999999999999999999989999999999999999998863 245667889999989887542
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
......++...|+++|+++.+.+...+ .|++++|++|+++++++|+++|.++
T Consensus 351 -----~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~al~~f 404 (404)
T d2byla1 351 -----KDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 404 (404)
T ss_dssp -----SSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred -----CchhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHcC
Confidence 122346788999999999987654443 4678999999999999999999764
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-45 Score=334.92 Aligned_cols=351 Identities=23% Similarity=0.297 Sum_probs=287.2
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC---CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc-----C
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT-----G 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~-----~ 74 (368)
++++||++|+|.+++++++++..+. ..+.+...++.+++.+..+ +.+++++++||++|++.|+++++.+. +
T Consensus 54 ~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~ 133 (429)
T d1s0aa_ 54 AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA 133 (429)
T ss_dssp TCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeeccccc
Confidence 5789999999999999999886432 4556788899999999987 67899999999999999999998763 3
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCC----CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSP----GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
+.+|+.+.++|||.+..++..++........ +... ..+..........+..+++++++.+.+++++++++++||+
T Consensus 134 ~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi 213 (429)
T d1s0aa_ 134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPI 213 (429)
T ss_dssp CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSS
T ss_pred ccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecce
Confidence 5689999999999999888887653322211 1100 0011111111222233678888888877789999999999
Q ss_pred C-CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHH
Q 017633 150 V-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 226 (368)
Q Consensus 150 ~-~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~ 226 (368)
. +.+|...++++|+++|+++|++||++||+||+++|| |.|..+..+++++.||+++++|++++| +++|.+++++++.
T Consensus 214 ~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~ 293 (429)
T d1s0aa_ 214 VQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVA 293 (429)
T ss_dssp EECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHH
T ss_pred eccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHH
Confidence 7 557788899999999999999999999999999999 999999999999999999999999866 8999999999998
Q ss_pred HHhcCC--CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeec
Q 017633 227 EMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304 (368)
Q Consensus 227 ~~~~~~--~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (368)
+.+... +.+.+++||++|++++++++++++.++++++.++..+..++++++|+++ .+.+.+..+++.|.+..+++..
T Consensus 294 ~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l-~~~~~v~~vrg~Gl~~~~e~~~ 372 (429)
T d1s0aa_ 294 ETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPA-RDAEMVADVRVLGAIGVVETTH 372 (429)
T ss_dssp HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGG-GGCTTEEEEEEETTEEEEEESS
T ss_pred hccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHh-ccCCceEEEeecccEEEEEecC
Confidence 887542 3467889999999999999999999998999999999999999999875 4456666889999999998753
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-cccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-GFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+....++.+.|+++|+++.+.+... +.|++.+|++|+++++++|+++++++
T Consensus 373 -------------~~~~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 373 -------------PVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp -------------CBCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred -------------cccHHHHHHHHHHCCcEEEecCCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 2234678999999999999877432 34688999999999999999998753
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=4.2e-44 Score=324.78 Aligned_cols=341 Identities=21% Similarity=0.266 Sum_probs=268.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc--------C
Q 017633 4 LIILFPSYLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------G 74 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~--------~ 74 (368)
++++||++|+|++++.+++++.... ........++.+++....++.+.+.+++||++|++.++++++.+. .
T Consensus 50 ~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~ 129 (404)
T d1z7da1 50 SVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPEN 129 (404)
T ss_dssp TTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhccccccc
Confidence 4689999999999999999874332 222233334444444444466889999999999999999987652 2
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
...++.+..+||+.+.......+......... .....+...|.++.+.++..+. +++++++++||+++++|
T Consensus 130 ~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EPi~g~~G 200 (404)
T d1z7da1 130 MAKIVVCKNNFSGRTLGCISASTTKKCTSNFG-------PFAPQFSKVPYDDLEALEEELK--DPNVCAFIVEPIQGEAG 200 (404)
T ss_dssp CCEEEEETTC---------------------------------CEEEECTTCHHHHHHHHT--STTEEEEEECSSBSTTT
T ss_pred ccccccccccCCCCcccccccccccccccCCC-------CCCccccccccchHHHHHHHhc--CCCEEEEEEEEEcCCCC
Confidence 34689999999998877777665543222111 1123456677778888888876 35899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~ 232 (368)
.+.++++|+++|+++|++||++||+||+++|| |+|..+.++++++.||++++||++++| +++|.+++++++.+.+.
T Consensus 201 ~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~-- 278 (404)
T d1z7da1 201 VIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK-- 278 (404)
T ss_dssp SBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCC--
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCC--
Confidence 99999999999999999999999999999999 999999999999999999999999977 89999999999988887
Q ss_pred CCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccch
Q 017633 233 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312 (368)
Q Consensus 233 ~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (368)
...+++||++||++++++.++++.+.++++.++..+..+++.+.+.+.+.+++.+..+++.|.++++.+....
T Consensus 279 -~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~------ 351 (404)
T d1z7da1 279 -PGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL------ 351 (404)
T ss_dssp -TTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT------
T ss_pred -CCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCc------
Confidence 4568899999999999999999999889999999999999999999998888888899999999999886422
Q ss_pred hcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
....++...|+++|+++.+.+...+ .|++.++++++++++++|+++++++
T Consensus 352 ------~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 352 ------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp ------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------ccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 2235788999999999988765544 4678999999999999999999763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.5e-43 Score=321.52 Aligned_cols=344 Identities=17% Similarity=0.153 Sum_probs=269.4
Q ss_pred eeccCCCcHHHHHHHHHHHHcCC-----CC--CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHh---
Q 017633 4 LIILFPSYLQVLAALGETMKKGT-----SF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--- 72 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~~~~~~~~~-----~~--~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~--- 72 (368)
++++||++|+|.+++.++++... .+ ..+....++|++.+.+..+ +.+++++++||++|++.|+++++.+
T Consensus 64 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~ 143 (461)
T d1ohwa_ 64 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRS 143 (461)
T ss_dssp TCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhh
Confidence 57899999999999998876521 11 2233456677777777766 6789999999999999999998765
Q ss_pred -----------------------cCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCC----
Q 017633 73 -----------------------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPF---- 124 (368)
Q Consensus 73 -----------------------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 124 (368)
+++.+||.+.++|||.+..++..++.+.....+ +..................
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (461)
T d1ohwa_ 144 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKE 223 (461)
T ss_dssp HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHH
T ss_pred cccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccc
Confidence 234579999999999999999998876433222 2111111000000000000
Q ss_pred ------CCHHHHHHHHH---cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccc
Q 017633 125 ------NDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 194 (368)
Q Consensus 125 ------~d~~~le~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~ 194 (368)
.+.+++++.+. .++++++++++||+++++|...++++|+++|+++|++||++||+||+++|| |+|..+.+
T Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~ 303 (461)
T d1ohwa_ 224 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 303 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGG
T ss_pred cchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccc
Confidence 12455666554 466789999999999999999999999999999999999999999999999 99999999
Q ss_pred cccCC--CcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 017633 195 EYFGV--TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272 (368)
Q Consensus 195 ~~~~~--~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 272 (368)
+++++ .||++++||++++|...+. . .+.......+++|++++++++++++++++.+.++++.++..+..+
T Consensus 304 e~~gi~~~PDiv~~gK~l~~g~~~~~----~----~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~ 375 (461)
T d1ohwa_ 304 EHWGLDDPADVMTFSKKMMTGGFFHK----E----EFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGK 375 (461)
T ss_dssp GGGCCSSCCSEEEECGGGSSEEEEEC----G----GGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccccccCchhhhhhhcccccccccc----c----ccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHH
Confidence 99998 4999999999986532221 1 122233456789999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhcC-CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCcc--ccccCC
Q 017633 273 ELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAH 349 (368)
Q Consensus 273 ~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~--~~~~~~ 349 (368)
+++++|+++..+++ ....+++.|.++++++. +.....++.+.|+++|+.+.+.+...+ .|++++
T Consensus 376 ~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~-------------~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~i 442 (461)
T d1ohwa_ 376 VLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-------------DESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVF 442 (461)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-------------SHHHHHHHHHHHHHTTEECEEETTTEEECCCCTTC
T ss_pred HHHHHHHHHHhhCCCceEEeeeeeEEEEEEcC-------------CHHHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCC
Confidence 99999999988875 56688999999999873 445567899999999999988765554 468999
Q ss_pred CHHHHHHHHHHHHHHHhhC
Q 017633 350 SSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 350 ~~~~i~~~~~~l~~~l~~~ 368 (368)
|++|+++++++|+++|.++
T Consensus 443 t~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 443 RDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6e-33 Score=250.65 Aligned_cols=322 Identities=16% Similarity=0.143 Sum_probs=210.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|++++++.+++++....|.+.....+|++.+++++ + +++++++|+|+++++..++..+ ..++|.|++.+
T Consensus 45 ~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~vl~~~ 122 (382)
T d1b5pa_ 45 TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI--LDPGDEVIVLS 122 (382)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh--CCCCCEEEECC
Confidence 3568999999988875433334555566777766654 3 4789999999999999999766 34678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|.+....+ ...|..+.........+.. .|++++++.++ ++++++++...+|++|.+++ .+.
T Consensus 123 P~y~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~~~~i~~~~P~NPTG~~~s-~~~ 185 (382)
T d1b5pa_ 123 PYWVSYPEMV-RFAGGVVVEVETLPEEGFV------------PDPERVRRAIT---PRTKALVVNSPNNPTGAVYP-KEV 185 (382)
T ss_dssp SCCTHHHHHH-HHTTCEEEEEECCGGGTTC------------CCHHHHHTTCC---TTEEEEEEESSCTTTCCCCC-HHH
T ss_pred CCcHHHHHHH-HHhcCeEEEEecccccccC------------CCHHHHHHhCC---CCCeEEEECCCCCCcchhCC-HHH
Confidence 9998765443 3334433221111111111 17899988776 45665555444555666555 455
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccc--cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~--~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
+++|+++|++||+++|+||+|.++ +.+....... .+....+.|+||.|+ +|+|+||+++++++++.+.. ....
T Consensus 186 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~---~~~~ 262 (382)
T d1b5pa_ 186 LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMAS---VSRQ 262 (382)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH---HHHT
T ss_pred HHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHH---HHHh
Confidence 999999999999999999999988 5554322211 122233568999999 89999999999988877652 2233
Q ss_pred ccCCCCHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRL-KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
...+.+.+.+.++...+... ..+.+.+..++..+..++.+.+.+...+.....+..|.++|+++...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~------------ 330 (382)
T d1b5pa_ 263 STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPI------------ 330 (382)
T ss_dssp TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTT------------
T ss_pred cccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEeCCCC------------
Confidence 44455666666655544311 11223333333333333444444444555444456677888877431
Q ss_pred cHHHHHHHHHHHHcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 318 TTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 318 ~~~~~~~~~~l~~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
..+...+.+.|+++||.+.||. ..++|+++..+++++++++++|++++
T Consensus 331 ~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 331 APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred CCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 2235678889999999999974 33567888889999999999998764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-32 Score=247.98 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=215.6
Q ss_pred ceeccCC------CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHHHHHHHH
Q 017633 3 QLIILFP------SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEACMGVLRL 68 (368)
Q Consensus 3 ~~~~~g~------~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~~~al~~ 68 (368)
.++.|+. .++.+++++.+++++....|.+.....+|++++++++ + ..++|++|+|+++++..++..
T Consensus 26 dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~ 105 (388)
T d1gdea_ 26 DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSA 105 (388)
T ss_dssp TCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTT
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHH
Confidence 4455554 3678999999998875433445556677777777764 1 357899999999999999865
Q ss_pred HHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcc
Q 017633 69 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 148 (368)
Q Consensus 69 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~ 148 (368)
+ ..++|.|++..++|......+.. .|..+........+++. -|+++|++.++ ++++++++..
T Consensus 106 l--~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~~~~~~~~~~~------------~d~~~l~~~~~---~~~~~i~~~~ 167 (388)
T d1gdea_ 106 F--LKDGEEVLIPTPAFVSYAPAVIL-AGGKPVEVPTYEEDEFR------------LNVDELKKYVT---DKTRALIINS 167 (388)
T ss_dssp T--CCTTCEEEEEESCCTTHHHHHHH-HTCEEEEEECCGGGTTC------------CCHHHHHHHCC---TTEEEEEEES
T ss_pred h--cCCCCEEEECCCCcHHHHHHHHH-cCCEEEEeecccccCCC------------CCHHHHHHhCc---cCCeEEEECC
Confidence 5 35688999999999876554433 34433221111111110 18999999887 3566665555
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccCC----Ccchhhhhhhcc-CCccceeeee
Q 017633 149 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGV----TPDLTTLGKIIG-GGLPVGAYGG 221 (368)
Q Consensus 149 ~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~~----~~di~s~sK~~~-~G~~iG~v~~ 221 (368)
.+|++|.+++ .+.+++|+++|++||++||+||+|.++ ..+.. ........ ...+.||||.++ +|+|+||+++
T Consensus 168 P~NPtG~~~s-~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~ 246 (388)
T d1gdea_ 168 PCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 246 (388)
T ss_dssp SCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEe
Confidence 4555666555 455999999999999999999999887 44332 22222211 223568999999 8999999999
Q ss_pred hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 222 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
++++++.+.. .......+.+.+.+.++..+++........+...+..+..+..+.+.+...+.....+..+.++|++
T Consensus 247 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl~~~ 323 (388)
T d1gdea_ 247 PSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPR 323 (388)
T ss_dssp CHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCB
T ss_pred eccchhhhhh---ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEEEEE
Confidence 9887776652 2234555667777777666554111011122333333333344444444445444445556677776
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.. ...++.++++.|+ ++||.+.||. ..++|+++..+++++++++++|++++++.
T Consensus 324 l~~------------~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 324 IRD------------TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp CGG------------GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCC------------CCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 632 1223577888776 5699999873 23467888889999999999999999763
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=8.5e-32 Score=243.30 Aligned_cols=322 Identities=13% Similarity=0.099 Sum_probs=210.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|.+++++.++++.....|.+.....+|++++++++ + .++++++|+|+++++..+++.+ ..++|.|++..
T Consensus 44 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~--~~~gd~Vlv~~ 121 (388)
T d1j32a_ 44 TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM--IEPGDEVIIPA 121 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEES
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH--hCCCCEEEEcC
Confidence 3578999999988875444445555667777776654 2 4789999999999999999766 35688999999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|..+...+....+..+... .....++. -|++++++.++ ++++++++...+|++|.+++. +.
T Consensus 122 P~y~~~~~~~~~~~~~~v~~~-~~~~~~~~------------~d~~~l~~~~~---~~~~~~~~~~P~NPTG~~~~~-~~ 184 (388)
T d1j32a_ 122 PFWVSYPEMVKLAEGTPVILP-TTVETQFK------------VSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTP-DE 184 (388)
T ss_dssp SCCTHHHHHHHHTTCEEEEEC-CCGGGTTC------------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCH-HH
T ss_pred CCcHHHHHHHHHhcCeEEEEe-cccccccC------------CCHHHHHHhCC---CCCeEEEECCCCCCCCcccch-hh
Confidence 999876544433333322221 11111111 18999999887 355555444445556665554 44
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-----CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCC
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-----GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-----~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
+++|+++|++||+++|+||+|.++ ..+.. ...... +....+.||||.++ +|+|+||+++++++++.+..
T Consensus 185 ~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~--- 261 (388)
T d1j32a_ 185 VRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATK--- 261 (388)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHH---
T ss_pred hhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHH---
Confidence 999999999999999999999877 43322 111111 12223568999999 89999999999998877652
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEEEeecCCCcccchh
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.........+..++.++...+.. .+++.++.++..+..++.+.+.+.+. +.....+..+.++|+++...
T Consensus 262 ~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~-------- 331 (388)
T d1j32a_ 262 IQGHSTSNVCTFAQYGAIAAYEN--SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT-------- 331 (388)
T ss_dssp HHHTTTCSCCHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG--------
T ss_pred hhhhccccccHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCC--------
Confidence 22334556677888776665542 23344444333333334444444444 33333445566777665321
Q ss_pred cccccHHHHHHHHHHH-HcCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 314 KKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..++++.|+ ++||.+.||. ..++|+++..+++++++++++|+++++.
T Consensus 332 ----~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 332 ----GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp ----TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 123467877776 5699999873 3456788888999999999999999875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3e-30 Score=232.76 Aligned_cols=320 Identities=19% Similarity=0.209 Sum_probs=231.0
Q ss_pred CceeccCCC-cHHHHHHHHHHHHcC-CCCCC------CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFPS-YLQVLAALGETMKKG-TSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~~-~~~v~~a~~~~~~~~-~~~~~------~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||+. ||+|++++.+++++. ...+. ..+.+.+|.+.+++++ +.+.+++++||++|+..++... .
T Consensus 51 ~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~-g~e~al~~~SG~~An~~~i~~l---~ 126 (401)
T d1fc4a_ 51 CANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-GMEDAILYSSCFDANGGLFETL---L 126 (401)
T ss_dssp CCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHTTHHHH---C
T ss_pred EccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-cCCceEEecchhhhhHHHHHHh---c
Confidence 456788985 999999999999873 22222 3578889999999988 4567889999999999999766 2
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVV 150 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~ 150 (368)
+...+|+.+...|.+....+...+ .++..++++|.++++++++. +.....++++++++
T Consensus 127 ~~~d~i~~d~~~h~s~~~G~~~~~-------------------a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~ 187 (401)
T d1fc4a_ 127 GAEDAIISDALNHASIIDGVRLCK-------------------AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp CTTCEEEEETTCCHHHHHHHHTSC-------------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred CCCcEEEeCCcchHHHHccccccC-------------------ceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 344455556666655443333322 23455666687777777653 34567899999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc--cCccccccCCC--cch--hhhhhhccCCccceeeeehHH
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGAQEYFGVT--PDL--TTLGKIIGGGLPVGAYGGRRD 224 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g--~~~~~~~~~~~--~di--~s~sK~~~~G~~iG~v~~~~~ 224 (368)
++.|...+ ++++.++|++||++||+||+|+....| ..+...+++.. +|+ .|+||+++ |.+.|++.++++
T Consensus 188 s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~ 262 (401)
T d1fc4a_ 188 SMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG-GASGGYTAARKE 262 (401)
T ss_dssp TTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SSSCEEEEECHH
T ss_pred CCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc-cCCcccccCCHH
Confidence 99999998 999999999999999999999755222 12345556653 444 48999995 556788899999
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 225 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 225 ~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
+++.++...+.+.++ .+.++...+++..+++.+.. ++++++++++.+++++.+.+..... ....++++.+.+.
T Consensus 263 ~~~~l~~~~~~~~~s-~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~-----~~~~~pIv~v~~~ 336 (401)
T d1fc4a_ 263 VVEWLRQRSRPYLFS-NSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTL-----AGADHAIIPVMLG 336 (401)
T ss_dssp HHHHHHHHCHHHHHS-CCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCB-----CCSSSSEEEEEEE
T ss_pred HHHHHHcCChhhhhc-CCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCcc-----CCCCCCEEEEEEC
Confidence 998887443333333 36678888888888886654 4567888888888888877753221 2223455555553
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------c--ccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------G--FTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------~--~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+.....++++.|+++||++.+...|. + +++..+|++||++++++|+++.+++
T Consensus 337 -------------~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 337 -------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 44556789999999999998765443 2 3578889999999999999998764
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.97 E-value=6e-29 Score=226.88 Aligned_cols=340 Identities=13% Similarity=0.058 Sum_probs=220.9
Q ss_pred cHHHHHHHHHHHHcCC---CCCCCChhHHHHHHHHHhhC----C---C-CCeEEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 11 YLQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAV----P---S-IEMVRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~----~---~-~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
++.+++++.+++.... +.|.+.....+|++.+++++ + . .++|++|+|+++|+..++..+ ..+++.|+
T Consensus 41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l--~~~gd~vl 118 (418)
T d2r5ea1 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH--VDEGDEVI 118 (418)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH--CCTTCEEE
T ss_pred CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc--ccccccee
Confidence 4679999999886532 11334444556666555543 3 3 478999999999999999776 35788999
Q ss_pred EEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCccccc-CCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 80 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
+.++.|+..........+........+...... .... ...+.+++++... +.++++++.+.+|++|.+++
T Consensus 119 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s 189 (418)
T d2r5ea1 119 IIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGT------ISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMD 189 (418)
T ss_dssp EEESCCTTHHHHHHHTTCEEEEEECEESCCSSC------EEGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC
T ss_pred ccccccchhhHHHHHcCCeEEEEEecccccccc------hhhhhhhhhHHHHhhhhh---ccccceecCCcCcccccccc
Confidence 999998876544444333322211111111110 0000 0115777776665 46777777666666776665
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc-cccCC---Ccchhhhhhhcc-CCccceeeeehHHHHHHhcC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFGV---TPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~-~~~~~---~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~ 231 (368)
+++ +++|+++|++||+++|+||+|..+ ..+.. ... ...+. ...+.|+||.++ +|+|+||+++++++++.+..
T Consensus 190 ~e~-~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~ 268 (418)
T d2r5ea1 190 RAE-LEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQM 268 (418)
T ss_dssp HHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHH
T ss_pred HHH-HHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhh
Confidence 554 999999999999999999999877 43321 111 11111 223458999998 89999999999998887762
Q ss_pred CCCccccccCCCCHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 232 AGPMYQAGTLSGNPLAMTAGIHTLKRLK-----EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 232 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
.....+++.+.+.+.++...+.... .+.+++++++..+..++.+.+.+.+.+.....+..|.++|+++....
T Consensus 269 ---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~ 345 (418)
T d2r5ea1 269 ---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLD 345 (418)
T ss_dssp ---HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSBSSEEEEECGGGS
T ss_pred ---cccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcccCCCceeEEEEEccccc
Confidence 2233455667777776665554321 14466666666666666666666667766666777888888875421
Q ss_pred CcccchhcccccHHHHHHHHHHHHc-CeeecCCCC-----------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF-----------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. ...........+..++++.|+++ ||.+.||.. .++|+++..+++++++++++|++.+.
T Consensus 346 ~-~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 346 S-KVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp T-TCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred c-cccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence 1 11111112334567899888765 999999732 23677888899999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.5e-28 Score=220.35 Aligned_cols=315 Identities=16% Similarity=0.116 Sum_probs=228.5
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC-C------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG-T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||. .+|++++++.+++++. . ......+.+.+|++.++++++ .+.+++++||+.|+..++... .
T Consensus 44 ~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g-~e~al~~~SG~~an~~~i~al---~ 119 (383)
T d1bs0a_ 44 SSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-YSRALLFISGFAANQAVIAAM---M 119 (383)
T ss_dssp SCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH---C
T ss_pred EcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC-CCceEEecccchhhHHHHHhh---c
Confidence 46678898 6999999999999872 1 223356889999999999985 567888889999999999766 3
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
++..+++.+...|.+....... ...++..++++|++++++.+...+++..++++++++++.
T Consensus 120 ~~~d~v~~d~~~h~si~~g~~~-------------------~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~ 180 (383)
T d1bs0a_ 120 AKEDRIAADRLSHASLLEAASL-------------------SPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMD 180 (383)
T ss_dssp CTTCEEEEETTCCHHHHHHHHT-------------------SSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred CCCceEEeeccccHHHhhcccc-------------------CCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCC
Confidence 4555666677777665444333 233566778889999999999877788999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhch--hcccCccccccCCCcch--hhhhhhccCCccceeeeehHHHHHHh
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~--~~g~~~~~~~~~~~~di--~s~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
|.+.| +++|.++|++||++|++||+|+.. ........++++..+++ .++||+++. ..|++.++.+.++.+
T Consensus 181 G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~--~Gg~v~~~~~~~~~l 254 (383)
T d1bs0a_ 181 GDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYL 254 (383)
T ss_dssp CCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHH
T ss_pred Ccccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc--cccccccchhHHHHH
Confidence 99999 999999999999999999999533 22223445677776664 468888874 467888888888888
Q ss_pred cCCCCccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC
Q 017633 230 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 306 (368)
Q Consensus 230 ~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (368)
+..+..+. .+.+.++..++++.++++.+... .+..++.++..++++.+.+ .++. ......+++.+.+.
T Consensus 255 ~~~~~~~~-~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~----~g~~-~~~~~s~Ii~v~~g--- 325 (383)
T d1bs0a_ 255 LQFARHLI-YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD----LPFT-LADSCSAIQPLIVG--- 325 (383)
T ss_dssp HHHCHHHH-SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT----SSCE-ECSCCSSBCCEEEE---
T ss_pred Hhhchhhh-hcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh----cCCc-cCCCCCCEEEEEEC---
Confidence 75443333 33366777888888888877542 2344455555555555543 4432 22233444444442
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------cc--cccCCCHHHHHHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GF--TSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------~~--~~~~~~~~~i~~~~~~l~~~ 364 (368)
++..+.++++.|+++||++.+...|. +| ++..+|++||+++++.|..+
T Consensus 326 ----------~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 326 ----------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ----------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45557789999999999998765432 33 57888999999999999864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=9.1e-30 Score=228.66 Aligned_cols=315 Identities=18% Similarity=0.140 Sum_probs=214.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.+|.+++++.++++....| .+.....+|++.++++++ +.++|++|+|+++++..++..+ ..+++.|++.++.|+..
T Consensus 39 ~p~~i~~al~~~l~~~~~Y-~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l--~~~~d~v~~~~p~~~~~ 115 (368)
T d1v2da_ 39 PPPFLLEAVRRALGRQDQY-APPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VGPGDEVVVLEPFFDVY 115 (368)
T ss_dssp CCHHHHHHHHHHTTTSCSC-CCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEEEESCCTTH
T ss_pred CCHHHHHHHHHHhhcccCC-CCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhcc--ccccccccccCCcchhh
Confidence 3568999999988764333 344557899999999998 8899999999999999999766 34678888888887765
Q ss_pred chhhhhhcCCCccccCCCC--CCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
.. .....+.......++. ..... |++++++.+++ .++.+++...+|++|.+.+ .+.+++|
T Consensus 116 ~~-~~~~~g~~~~~~~~~~~~~~~~~-------------d~~~l~~~~~~---~~~~i~~~~p~NPtG~~~~-~~~l~~l 177 (368)
T d1v2da_ 116 LP-DAFLAGAKARLVRLDLTPEGFRL-------------DLSALEKALTP---RTRALLLNTPMNPTGLVFG-ERELEAI 177 (368)
T ss_dssp HH-HHHHTTCEEEEEECEEETTEEEC-------------CHHHHHTTCCT---TEEEEEEESSCTTTCCCCC-HHHHHHH
T ss_pred hh-HHHhcCCccceeccccccccccC-------------CHHHHHHhhcc---CceEEEEcCCCCcccccCC-HHHHHHH
Confidence 43 3333333322211110 11111 88999988873 4554444444455665555 4559999
Q ss_pred HHHHHHhCCEEEEehhhhch-hcccCccccc--cCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCC
Q 017633 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~-~~g~~~~~~~--~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~ 242 (368)
+++|++||+++|+||+|..+ .......... ......+.++||.++ +|+|+||+++++++++.+. ......+.+
T Consensus 178 ~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~---~~~~~~~~~ 254 (368)
T d1v2da_ 178 ARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLA---GMRQWTSFS 254 (368)
T ss_dssp HHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHH---HHHHHHTSS
T ss_pred HHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhh---hhhhccccc
Confidence 99999999999999999755 3222211111 112233568999888 7999999999988877766 233445667
Q ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 243 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
.+.+.+.++..+++......+.+++++..+..++.+.+.+.+.+.....+..+.++|+.+.. .
T Consensus 255 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~--------------~--- 317 (368)
T d1v2da_ 255 APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG--------------W--- 317 (368)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTT--------------C---
T ss_pred cccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCc--------------c---
Confidence 78888888777776555556666665555555556666666666655555557777877621 1
Q ss_pred HHHHHHHHcCeeecCCC--------CCccccccCCCHHHHHHHHHHHHHHH
Q 017633 323 RFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 323 ~~~~~l~~~Gi~~~~~~--------~~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+..+.|.++||.+.|+. ..++|+++..+++++++++++|++++
T Consensus 318 ~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 12345678899998863 23467777789999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.97 E-value=1.7e-29 Score=228.80 Aligned_cols=330 Identities=14% Similarity=0.048 Sum_probs=204.7
Q ss_pred ceeccCCC------cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHH
Q 017633 3 QLIILFPS------YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLA 69 (368)
Q Consensus 3 ~~~~~g~~------~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~ 69 (368)
.+++|+.+ +|++++++.++++... ++|+. ...+|++.+++++ + .+++|++|+|+++++..++...
T Consensus 32 ~vi~l~~g~pdf~~p~~v~~al~~~~~~~~-~~Y~~-g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~ 109 (394)
T d1c7na_ 32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYTG-PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF 109 (394)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSBC-CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCC-cCCCC-CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc
Confidence 35666654 6789999999988742 33332 2345666666654 3 5789999999999999999876
Q ss_pred HHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 70 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
..+++.|++.+++|+..........+..+........... ..|.+.++..+.. ++++++++.+.
T Consensus 110 --~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~------------~~d~~~~~~~~~~--~~~~~i~l~~P 173 (394)
T d1c7na_ 110 --TKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYY------------TIDFQKLEKLSKD--KNNKALLFCSP 173 (394)
T ss_dssp --CCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEE------------ECCHHHHHHHHTC--TTEEEEEEESS
T ss_pred --cccccccccccCcccchhhHHhhhhhcccccccccccccc------------cchhhhhhhhhcc--ccceEEEeccc
Confidence 3578899999888877654444443333322111111110 0167777777753 35776666666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccc-cc-----cCCCcchhhhhhhcc-CCccceeeee
Q 017633 150 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EY-----FGVTPDLTTLGKIIG-GGLPVGAYGG 221 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~-~~-----~~~~~di~s~sK~~~-~G~~iG~v~~ 221 (368)
+|++|.+.+.++ +++|+++|++|+++||+||+|.++ ..+..... .. ......+.|+||.++ +|+|+||+++
T Consensus 174 ~NPTG~v~s~~~-l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~ 252 (394)
T d1c7na_ 174 HNPVGRVWKKDE-LQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIII 252 (394)
T ss_dssp BTTTTBCCCHHH-HHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred ccccceeccHHH-hhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccc
Confidence 666676665554 999999999999999999999887 44332111 11 112223458999999 8999999977
Q ss_pred h-HHHHHHhcCCCCccccccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc--CCceEEeeccce
Q 017633 222 R-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA--GHAICGGYISGM 297 (368)
Q Consensus 222 ~-~~~~~~~~~~~~~~~~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~ 297 (368)
+ +.+.+.+.. .....+. +.+...++++...... .+.+.+.+.+..+..++.+.+.+... ++....+..+.+
T Consensus 253 ~~~~i~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~ 327 (394)
T d1c7na_ 253 KNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYL 327 (394)
T ss_dssp CCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSE
T ss_pred cChhhhhhhhh---hhhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeE
Confidence 5 455555542 1111111 2223333333333221 12334444444444444444443332 222233344667
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
+|+++... ..+..++++.|+++ ||.+.||. ..++|+++..+++++++++++|+++++++
T Consensus 328 ~~~~~~~~------------~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 328 QWIDFRAL------------KMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDL 393 (394)
T ss_dssp EEEECGGG------------CCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC------------CCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 78776421 22357899998876 99998863 23467888889999999999999999763
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=8.5e-30 Score=230.63 Aligned_cols=325 Identities=14% Similarity=0.014 Sum_probs=203.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++.+++++.+++......|.+.....+|++++++++ + ..+++++++|+++++..++.+. ..+++.|++.++
T Consensus 48 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~--~~~Gd~vlv~~P 125 (395)
T d1xi9a_ 48 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL--LDPGDEILVPGP 125 (395)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEES
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh--cCCCCEEEEcCC
Confidence 457999999998775444445555667777776654 3 4789999999999999988766 356789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
+|+.+...+.. .|..+.........++. .|++++++.+. ++++++++...+|++|.+.+ .+.+
T Consensus 126 ~y~~~~~~~~~-~g~~~v~v~~~~~~~~~------------~d~~~~~~~~~---~~~~~v~l~~P~NPTG~~~s-~~~~ 188 (395)
T d1xi9a_ 126 SYPPYTGLVKF-YGGKPVEYRTIEEEDWQ------------PDIDDIRKKIT---DRTKAIAVINPNNPTGALYD-KKTL 188 (395)
T ss_dssp CCHHHHHHHHH-TTCEEEEEEEEGGGTSE------------ECHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-HHHH
T ss_pred ccccchhhhhh-cCCEEEEEecccccccc------------chHHHHHHhhc---ccccEEEecCCCCCccchhh-HHHH
Confidence 99865443333 33322211111111110 17889888876 35555555444555666555 4559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCcccc---ccCCCcchhhhhhhcc-CCccceeeeeh--HHHHHHhcCCCCcc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQE---YFGVTPDLTTLGKIIG-GGLPVGAYGGR--RDIMEMVAPAGPMY 236 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~---~~~~~~di~s~sK~~~-~G~~iG~v~~~--~~~~~~~~~~~~~~ 236 (368)
++|+++|++|++++|.||+|.++ +.+...... .......+.||||.++ +|+|+||+++. +.....+.......
T Consensus 189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~ 268 (395)
T d1xi9a_ 189 EEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRL 268 (395)
T ss_dssp HHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHH
T ss_pred HHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHh
Confidence 99999999999999999999877 433322211 1112233558999999 89999998542 22222221100111
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeccceEEEEeecCCCcccchhcc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
...++..+.+++.++..+++ ..+++.++.++..+..++.+.+.+.+.+.. ...+..+.++|+++....
T Consensus 269 ~~~~~~~~~~~q~a~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~--------- 337 (395)
T d1xi9a_ 269 ARIRLCPNTPAQFAAIAGLT--GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGP--------- 337 (395)
T ss_dssp HHHTCCSCSHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCS---------
T ss_pred hcCCCCcCHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCC---------
Confidence 22344567778877776665 123344444444444444455545445432 223445677787775321
Q ss_pred cccHHHHHHHHHHH-HcCeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 316 SETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 316 ~~~~~~~~~~~~l~-~~Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..+..+++..|+ ++||.+.||. ..++|+++..+++++++++++|++++++
T Consensus 338 --~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 338 --WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp --CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 122456776665 5699998873 2346788888999999999999999875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.96 E-value=6.3e-28 Score=215.06 Aligned_cols=318 Identities=20% Similarity=0.157 Sum_probs=229.9
Q ss_pred CceeccCC-CcHHHHHHHHHHHHcC-C------CCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc
Q 017633 2 PQLIILFP-SYLQVLAALGETMKKG-T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 73 (368)
Q Consensus 2 ~~~~~~g~-~~~~v~~a~~~~~~~~-~------~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~ 73 (368)
.++++||. .+|+++++..+++++. . ......+.+.+|+++++++++. +..++.+||..|+..++......
T Consensus 51 sSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~-e~all~~sG~~An~~~i~~l~~~- 128 (396)
T d2bwna1 51 CGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYNANDATLSTLRVL- 128 (396)
T ss_dssp SCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHHHHHHH-
T ss_pred EcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC-CceeeeecchHHHHHHHHHHhcc-
Confidence 46788888 9999999999999872 1 2234568899999999999965 56666778999999999765332
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc-CCCCeEEEEEcccCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGN 152 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~-~~~~~~~~~~~~~~~~ 152 (368)
+.+.+++.+...|.+..-.+.+.+. ++..++++|.+++++.++. .+.....++++.+++|
T Consensus 129 ~~~d~i~~D~~~Hasi~~g~~ls~a-------------------~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySm 189 (396)
T d2bwna1 129 FPGLIIYSDSLNHASMIEGIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSM 189 (396)
T ss_dssp STTCEEEEETTCCHHHHHHHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTT
T ss_pred cCCCceeehhhhhhccchhhhcccc-------------------CceEeecchHHHhhhHHhhhcccCceeEEEEeeccC
Confidence 4456777788888766555554433 4456677799999988875 3456789999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCc--c--hhhhhhhccCCccceeeeehHHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP--D--LTTLGKIIGGGLPVGAYGGRRDIM 226 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~--d--i~s~sK~~~~G~~iG~v~~~~~~~ 226 (368)
.|.+.| +++|.++|++||++|++||+| .|+ .....+...+++... | +.||||+||+ -.|++.++++++
T Consensus 190 dGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i 263 (396)
T d2bwna1 190 DGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV--FGGYIAASARMV 263 (396)
T ss_dssp TCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS--CCEEEEECHHHH
T ss_pred cccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc--cccccchhHHHH
Confidence 999999 999999999999999999999 444 222223445555532 3 3589999984 355778899999
Q ss_pred HHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 227 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
+.++.....+.+++ +.++..++++.++++.+..++ ++..+..+.+++++.+.++ +++. .....+++.+.+.
T Consensus 264 ~~l~~~~~~~ifSt-alpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~----g~~~-~~~~spIvpv~ig 337 (396)
T d2bwna1 264 DAVRSYAPGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL----GMPI-IDHGSHIVPVVIG 337 (396)
T ss_dssp HHHHHHCHHHHTSB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCSSSCEEEECC
T ss_pred HHHHhhcchhhhcc-cCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc----CCCc-CCCCCCEEEEEeC
Confidence 99875443333333 667788888888888876422 3455666777777777664 3322 1233556666652
Q ss_pred cCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCc-------cc--cccCCCHHHHHHHHHHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-------GF--TSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~-------~~--~~~~~~~~~i~~~~~~l~~~l 365 (368)
++....++++.|+ ++||++.+...|. +| ++..+|++||++++++|++++
T Consensus 338 -------------~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 338 -------------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp -------------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred -------------CHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 4455678888866 6799998865543 23 477889999999999999864
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.7e-29 Score=224.08 Aligned_cols=325 Identities=13% Similarity=0.029 Sum_probs=200.0
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHh----hCC---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVIS----AVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
.+|.+++++.+++......|.+... .++++++++ .++ ++++|++|+|+++++..++... ..++|.|++.+
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l--~~~gd~Vlv~~ 89 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHT 89 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc--ccccccccccc
Confidence 5678999999988764322222222 345555555 444 5789999999999999988766 35678999999
Q ss_pred CCCCCCchhhhhhcCCCccccCC-CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
++|..+. ......+........ ....+.. .|++.+++.+.. ++++++++.+.+|++|.+.+.++
T Consensus 90 P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~~------------~d~~~~~~~~~~--~~~~~i~l~~p~NPTG~~~s~~~ 154 (361)
T d1d2fa_ 90 PAYDAFY-KAIEGNQRTVMPVALEKQADGWF------------CDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDE 154 (361)
T ss_dssp SCCHHHH-HHHHHTTCEEEEEECEECSSSEE------------CCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTH
T ss_pred ccccchh-HHHHhhcceEEeecccccccccc------------cccccchhhccc--CCceeEEecccccccccccchhh
Confidence 9887653 333333433221111 1111110 189999998874 46777766665666776666555
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccccC--CCcchhhhhhhcc-CCccceeeeeh-HHHHHHhcCCCCc
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPM 235 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~~--~~~di~s~sK~~~-~G~~iG~v~~~-~~~~~~~~~~~~~ 235 (368)
+++|+++|++||+++|+||+|.++ +.+.. ....... ....+.++||.++ +|+|+||+... +...+..... ..
T Consensus 155 -~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~-~~ 232 (361)
T d1d2fa_ 155 -LEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA-LK 232 (361)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH-HH
T ss_pred -hhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhh-cc
Confidence 999999999999999999999887 44332 1111111 1223457899999 79999998553 3332222100 00
Q ss_pred cccccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
......+++...+.++..+.+.... +.....+.++++.+.+.+.+.+... ....+..+.++|+++..
T Consensus 233 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~p~gg~~~~~~l~~--------- 301 (361)
T d1d2fa_ 233 GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPEL--NWQIPQSTYLAWLDLRP--------- 301 (361)
T ss_dssp TTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CCCCCSBCSEEEEECGG---------
T ss_pred cccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccc--cccccCceeEEEEEccC---------
Confidence 0112223455555555545443211 2233444444455544444433222 22334446677777642
Q ss_pred cccccHHHHHHHHHHHHc-CeeecCCC------CCccccccCCCHHHHHHHHHHHHHHHhhC
Q 017633 314 KKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~-Gi~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
...+..++++.|+++ ||.+.||. ..++|+++..+++++++++++|+++++++
T Consensus 302 ---~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 302 ---LNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp ---GCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 223457899988765 99998863 23467788889999999999999998763
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.4e-28 Score=221.73 Aligned_cols=344 Identities=13% Similarity=0.053 Sum_probs=215.4
Q ss_pred cHHHHHHHHHHHHcCC--CCCCCChhHHHHHHHHHhhC----C-C---CCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 11 YLQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAV----P-S---IEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~----~-~---~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
++.+++++.+++.+.. +.|.+.....+|++++++++ + . .++|++|+|+++++..++..+ ..+++.|++
T Consensus 40 p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l--~~~g~~vlv 117 (418)
T d1w7la_ 40 PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL--VDEGDEVII 117 (418)
T ss_dssp CHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH--CCTTCEEEE
T ss_pred CHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh--ccCCceeec
Confidence 4568899999887632 22344455666776666654 3 2 257999999999999999777 356789999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
..+.|+.+...........+.....+....... ........ .|.+++..... +.++++++...+|++|.+.+ .
T Consensus 118 ~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~--~~~~~~~~-~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s-~ 190 (418)
T d1w7la_ 118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE--LGSSSNWQ-LDPMELAGKFT---SRTKALVLNTPNNPLGKVFS-R 190 (418)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECEECC---CC--SEEGGGEE-CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-H
T ss_pred cccccchhHHHHHHcCCEeeccccccccccccc--cccccCcc-cchhhhhcccc---ccccceeccCcCCccccccc-H
Confidence 988888765444443333222221111110000 00000000 14555554443 46666665555555665555 5
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC-cccccc-CC---Ccchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-GV---TPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~~-~~---~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
+.+++|+++|++|++++|+||+|.++ +.+.. .....+ +. ...+.|+||.++ +|+|+||+++++++++.+..
T Consensus 191 ~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~-- 268 (418)
T d1w7la_ 191 EELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT-- 268 (418)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhcc--
Confidence 55999999999999999999999888 54432 112111 22 223568999998 89999999999998887762
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHc---c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCc
Q 017633 234 PMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 308 (368)
Q Consensus 234 ~~~~~~t~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (368)
.....+++.+.+++.++..++.... + ..+....++..+..++.+.+.+.+.+.....+..|.++|+++......
T Consensus 269 -~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~ 347 (418)
T d1w7la_ 269 -VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRK 347 (418)
T ss_dssp -HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSBSSEEEEECHHHHHH
T ss_pred -ccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccCCCceeEEEEECcccccc
Confidence 3344566778888888777765332 1 345555555555556666666666676656666778888887531110
Q ss_pred ccchhcccccHHHHHHHHHHHH-cCeeecCCCC-----------CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 309 NFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-----------EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
........+.....++++.|++ +||.+.||.. .++|+++..+++++++++++|++...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 348 MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred cchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 0000011122345778877764 6999988732 24677878899999999999998754
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.1e-28 Score=218.37 Aligned_cols=314 Identities=16% Similarity=0.143 Sum_probs=201.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++.+++++.+.+.+....|.+.....+|++.+++++ + +.+++++|+|+++|+..++..+ ..+++.|++..+
T Consensus 43 p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~vlv~~P 120 (375)
T d1o4sa_ 43 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL--LDPGDEVIVFSP 120 (375)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEES
T ss_pred CHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH--hCCCCEEEEccC
Confidence 457899999988764433445555677777777764 2 4789999999999999999766 356789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.|..+........................ |.+.++.... ++++++++...+|++|.+.+ .+.+
T Consensus 121 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~l~nP~NPTG~~~s-~~~~ 183 (375)
T d1o4sa_ 121 VWVSYIPQIILAGGTVNVVETFMSKNFQP-------------SLEEVEGLLV---GKTKAVLINSPNNPTGVVYR-REFL 183 (375)
T ss_dssp CCTTHHHHHHHTTCEEEEEECCGGGTTCC-------------CHHHHHHTCC---TTEEEEEEESSCTTTCCCCC-HHHH
T ss_pred ccccchhhhhccccccccccccccccccc-------------hhHHHHHhhc---cCccEEEEeCCCCCccCCCC-HHHH
Confidence 88876444333332222221111111111 5666665544 45555555444555666555 5559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCcc----ccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGA----QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQ 237 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~----~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~ 237 (368)
++|+++|++|+++||+||+|..+ ..+.... .+..+....+.|+||.++ +|+|+||++++++.++.+.. ...
T Consensus 184 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~---~~~ 260 (375)
T d1o4sa_ 184 EGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSK---IQS 260 (375)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH---HHH
T ss_pred HHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhh---hhc
Confidence 99999999999999999999776 3322211 122233344679999999 89999999999888777652 223
Q ss_pred cccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccc
Q 017633 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 238 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
..+...+...+..+...++.. .....+.+.++++.+.+.|++ .+.....+..+.++|+.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~----~g~~~~~p~gg~f~~~~~~~------------- 322 (375)
T d1o4sa_ 261 HTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKK----MGVKFVEPEGAFYLFFKVRG------------- 322 (375)
T ss_dssp HHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHH----TTCCCCCCSBSSEEEEECSS-------------
T ss_pred cccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHh----cCceEecCCccEEEEEECCC-------------
Confidence 333344555544433322211 012344455555555555544 45444445556778887631
Q ss_pred cHHHHHHHHHHH-HcCeeecCCCC----CccccccCCCHHHHHHHHHHHHHHHh
Q 017633 318 TTKFARFYRGML-EEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 318 ~~~~~~~~~~l~-~~Gi~~~~~~~----~~~~~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. ..+++..|+ ++||.+.||.. .++|+++..+++++++++++|+++++
T Consensus 323 -~-~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 323 -D-DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp -C-HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred -C-HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 1 345566655 57999998742 34678888899999999999999885
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=1.1e-28 Score=224.21 Aligned_cols=325 Identities=12% Similarity=0.100 Sum_probs=200.7
Q ss_pred ceeccCCCcH--------HHHHHHHHHHHcC----CCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHH
Q 017633 3 QLIILFPSYL--------QVLAALGETMKKG----TSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACM 63 (368)
Q Consensus 3 ~~~~~g~~~~--------~v~~a~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~ 63 (368)
.+++|+.|.| .+++++.+.+... ..| .+.....+|++.+++++ + +.++|++|+|+++++.
T Consensus 30 ~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y-~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 30 DVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQY-GTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSC-CCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCC-CCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 4566766533 4566666665442 123 34555666666666654 3 5799999999999999
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCC----CH----HHHHHHHH
Q 017633 64 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DV----SALENLFE 135 (368)
Q Consensus 64 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~----~~le~~~~ 135 (368)
.++.+. ..+++.|++..++|..+....... +... +.++.+ +. +..+....
T Consensus 109 ~~~~~l--~~~gd~v~~~~P~y~~~~~~~~~~-g~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~~ 166 (403)
T d1wsta1 109 LIGRVF--LNPGDPIVVEAPTYLAAIQAFKYY-DPEF-------------------ISIPLDDKGMRVDLLEEKLEELRK 166 (403)
T ss_dssp HHHHHH--CCTTCEEEEEESCCHHHHHHHHTT-CCEE-------------------EEEEEETTEECHHHHHHHHHHHHH
T ss_pred HHHHHH--hhcCCccccCCCcchhhhHHHhhc-cccc-------------------eeEeecccCCccccccccchhhhh
Confidence 999876 356889999999888764433322 2211 111111 22 22223333
Q ss_pred cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-cc---cccCCCcchhhhhhhc
Q 017633 136 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ---EYFGVTPDLTTLGKII 210 (368)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~~---~~~~~~~di~s~sK~~ 210 (368)
...+.+.++++.+.+|++|.+. +.+.+++|+++|++||++||+||+|.++ +.+... .. +..+....+.|+||.+
T Consensus 167 ~~~~~~~~~~~~~p~NPtG~~~-s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 245 (403)
T d1wsta1 167 QGKRVKIVYTVSTFQNPAGVTM-SVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL 245 (403)
T ss_dssp TTCCCCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT
T ss_pred ccccccccccccccCCCCCccC-CHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee
Confidence 3323344444444444456545 4555999999999999999999999887 544322 11 2233344467999999
Q ss_pred cCCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc---CC
Q 017633 211 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA---GH 287 (368)
Q Consensus 211 ~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~ 287 (368)
++|+|+||+++++++++.+.. .....+...+...+.+..+.......+.+.+++++.....++.+.+.+.+. +.
T Consensus 246 ~~G~RiG~~i~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 322 (403)
T d1wsta1 246 APGFRIGWVAAHPHLIRKMEI---AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGV 322 (403)
T ss_dssp CGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred cCcccccccccchHHHHHHHH---HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCe
Confidence 889999999999988887652 223334455666665555444422222233333333333334443333322 23
Q ss_pred ceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--------CccccccC-CCHHHHHHHH
Q 017633 288 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--------EAGFTSLA-HSSDDIQHTI 358 (368)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--------~~~~~~~~-~~~~~i~~~~ 358 (368)
....+..+.++|+.+. ++.+...+++.|+++||.+.|+.. .++|+++. .+++++++++
T Consensus 323 ~~~~p~gg~~~~~~~~-------------~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al 389 (403)
T d1wsta1 323 EWTKPEGGMFVRVTLP-------------EGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGV 389 (403)
T ss_dssp EECCCSBSSEEEEECC-------------TTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHH
T ss_pred EEeCCCceeEEEEECC-------------CCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHH
Confidence 3344555778887763 223346788899999999988631 23567665 5899999999
Q ss_pred HHHHHHHhh
Q 017633 359 TAAEKVLRQ 367 (368)
Q Consensus 359 ~~l~~~l~~ 367 (368)
++|++++++
T Consensus 390 ~rl~~~l~~ 398 (403)
T d1wsta1 390 RRLAETIKE 398 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.96 E-value=2.5e-28 Score=218.04 Aligned_cols=312 Identities=17% Similarity=0.070 Sum_probs=195.7
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
|++| .+|.+++++.+.+..... ||+....+|++.++++++ +.++|++++|+++++...+... .++.+++..+
T Consensus 32 np~~-~p~~~~~a~~~~~~~~~~--Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~----~~~~~~v~~p 104 (355)
T d1lc5a_ 32 NPLG-MPVSVKRALIDNLDCIER--YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL----KPRRAMIVTP 104 (355)
T ss_dssp CTTC-CCHHHHHHHHHTGGGGGS--CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH----CCSEEEEEES
T ss_pred CCCC-CCHHHHHHHHHHHHHhcc--CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh----ccccccccCC
Confidence 6777 578899999988766433 355555789999999998 7889999988888777665543 3445556666
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.|..+... ....+.+....++...+++. ..+++++.+. ++++++++.+.+|++|.+.+ .+++
T Consensus 105 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~---~~~~~v~l~nP~NPtG~~~~-~e~l 166 (355)
T d1lc5a_ 105 GFAEYGRA-LAQSGCEIRRWSLREADGWQ-------------LTDAILEALT---PDLDCLFLCTPNNPTGLLPE-RPLL 166 (355)
T ss_dssp CCTHHHHH-HHHTTCEEEEEECCGGGTTC-------------CCTTHHHHCC---TTCCEEEEESSCTTTCCCCC-HHHH
T ss_pred ccceeccc-cccccccceeeeeeccCCcc-------------ceeeeeeccc---cccceeeeecccCcccccch-hhhh
Confidence 66544322 32333333222222222221 1233444444 35555555544556666554 5559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCcc--ccccCCCcchhhhhhhcc-CCccceeeeehHH-HHHHhcCCCCcccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGA--QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD-IMEMVAPAGPMYQA 238 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~--~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~-~~~~~~~~~~~~~~ 238 (368)
++|+++|++|++++|+||+|.+| ..+.... ....+....+.|+||.++ +|+|+||++++++ +.+.++. ..
T Consensus 167 ~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~-----~~ 241 (355)
T d1lc5a_ 167 QAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRR-----QQ 241 (355)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHH-----HS
T ss_pred hhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHh-----hc
Confidence 99999999999999999999887 4333211 111222334568999999 9999999988654 4454442 22
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.+++.+.+++.++.++++ +..+.....+..+.-++.+.+.+.+.+.....+..++++|+.+..
T Consensus 242 ~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~f~~~~~~~-------------- 304 (355)
T d1lc5a_ 242 MPWSVNALAALAGEVALQ---DSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCER-------------- 304 (355)
T ss_dssp CTTCSCHHHHHHHHHGGG---CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESC--------------
T ss_pred CCcccccccccccccccc---ccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCCCCEEEEEECCC--------------
Confidence 456778888888777665 222222222222222233333333444333455667777877632
Q ss_pred HHHHHHHHHHHHcCeeecCCCC------CccccccCCCHHHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+..++++.|+++||.++++.. .++|+++. +++|+++++++|+++|
T Consensus 305 -~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 305 -EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp -TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 235688999999999988642 23455543 7899999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.5e-27 Score=214.90 Aligned_cols=317 Identities=16% Similarity=0.116 Sum_probs=213.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCC-eEEEeCChHHHHHHHHHHHHHhcCCceEEEEc
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 82 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~-~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~ 82 (368)
++.+++++.+++.+....|.+.....+|++.+++++ + ..+ ++++|+|+++++..++.++ ..+++.|++.+
T Consensus 41 p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l--~~~gd~vl~~~ 118 (382)
T d1u08a_ 41 PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL--VRNGDEVICFD 118 (382)
T ss_dssp CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH--CCTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc--ccccceEEEec
Confidence 447899999988775433445555666777776654 3 344 5999999999999999776 35788899999
Q ss_pred CCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
++|+......... +............... |++++++.++ ++++++++.+.+|++|.+.+.+ .
T Consensus 119 p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~~~i~l~~P~NPtG~v~~~~-~ 180 (382)
T d1u08a_ 119 PSYDSYAPAIALS-GGIVKRMALQPPHFRV-------------DWQEFAALLS---ERTRLVILNTPHNPSATVWQQA-D 180 (382)
T ss_dssp SCCTTHHHHHHHT-TCEEEEEECCTTTCCC-------------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH-H
T ss_pred ccccchhhhhhhc-cccceecccccccccC-------------CHHHHhhhhc---cCccEEEECCCCcccccccccc-c
Confidence 9998765444333 3322222222222211 7888888777 4566666655555566655544 4
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccC-cccc----ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE----YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~----~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
+++|.++|++++++++.||.|..+ ..+.. .... ..+...-+.++||.++ +|+|+||+++++++++.+.. .
T Consensus 181 ~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~---~ 257 (382)
T d1u08a_ 181 FAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRK---V 257 (382)
T ss_dssp HHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH---H
T ss_pred chhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHh---h
Confidence 999999999999999999999665 32211 1110 1112233568999998 89999999999988887762 3
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
....+++.+.+.+.++..+++.- +++.+..++..+..++.+.+.+...+.....+..|.++|+++...
T Consensus 258 ~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~~~~~~---------- 325 (382)
T d1u08a_ 258 HQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAV---------- 325 (382)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTT----------
T ss_pred hcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEEecCCC----------
Confidence 34456678888888888777632 345555555555555666665555555555556677788876421
Q ss_pred cccHHHHHHHHHHH-HcCeeecCCCC--------CccccccCCCHHHHHHHHHHHHH
Q 017633 316 SETTKFARFYRGML-EEGVYFAPSQF--------EAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 316 ~~~~~~~~~~~~l~-~~Gi~~~~~~~--------~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
...+..++++.|+ ++||.+.||.. .++|+++..+++++++++++|++
T Consensus 326 -~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 326 -STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp -CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred -CCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 1233577888876 56999998732 23577888899999999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.96 E-value=4.1e-27 Score=215.11 Aligned_cols=307 Identities=11% Similarity=0.029 Sum_probs=184.2
Q ss_pred hHHHHHHHHHhh----CC-----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccC
Q 017633 34 LENVLAEMVISA----VP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 104 (368)
Q Consensus 34 ~~~~l~~~l~~~----~~-----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (368)
...+|+++++++ ++ ++++|++|+|+++++..++.+. ..++|.|++..++|...........|.++....
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l--~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 161 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIH 161 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEEC
T ss_pred chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHh--CCCCCEEEEccCCchHHHHHHHHhcCCeEEEee
Confidence 334555555554 33 3679999999999999999766 356789999998887654333223344333322
Q ss_pred CCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 105 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
.....++.. |+++++.++.. ..++++++++.+.+|++|.+.+. +.+++|+++|++||++||+||
T Consensus 162 ~~~~~~~~~------------d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~-~~~~~i~~~a~~~~~~vI~De 228 (428)
T d1iaya_ 162 CESSNNFKI------------TSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDK-DTLKSVLSFTNQHNIHLVCDE 228 (428)
T ss_dssp CCTTTTTCC------------CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCH-HHHHHHHHHHHTTTCEEEEEC
T ss_pred ccccccccc------------ccccccchhhhhhccCCCceEEEEccCCCcccccccc-cccchhheeeccCcEEEEecc
Confidence 222222211 67777665432 23456655554445556655554 449999999999999999999
Q ss_pred hhhch-hcccCc-cccc-c----------CCCcchhhhhhhcc-CCccceeeee-hHHHHHHhcCCCCccccccCCCCHH
Q 017633 182 VMTGF-RLAYGG-AQEY-F----------GVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPL 246 (368)
Q Consensus 182 ~~~~~-~~g~~~-~~~~-~----------~~~~di~s~sK~~~-~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~ 246 (368)
+|.++ +.+..+ .... . +...-+.||||.++ +|+|+||+++ ++.+.+.+... . .....+..
T Consensus 229 ~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~----~-~~~~~~~~ 303 (428)
T d1iaya_ 229 IYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM----S-SFGLVSTQ 303 (428)
T ss_dssp TTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH----H-TTSCCCHH
T ss_pred cccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhh----h-cccccccc
Confidence 99887 544321 1110 0 11122458999998 7999999987 56666665521 1 11123444
Q ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHH
Q 017633 247 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 325 (368)
Q Consensus 247 ~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (368)
.+.++.+.+..... +++.+..+++.+..++.+.+.+...+.....+..|.++|+++...... ....+..+++
T Consensus 304 ~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~-------~~~~~~~~l~ 376 (428)
T d1iaya_ 304 TQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRE-------STFDSEMSLW 376 (428)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSS-------SSHHHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECcccccc-------CCCCCHHHHH
Confidence 44443333220000 223333333333344445555555565545556677889887542211 1233456788
Q ss_pred HHHHH-cCeeecCCC------CCccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 326 RGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 326 ~~l~~-~Gi~~~~~~------~~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
+.|++ +||.+.||. ..++|+++. .+++++++++++|++++..
T Consensus 377 ~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 377 RVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 88876 599998863 233677765 4777899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.95 E-value=5.6e-27 Score=214.40 Aligned_cols=294 Identities=12% Similarity=0.063 Sum_probs=180.5
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCH
Q 017633 48 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 127 (368)
Q Consensus 48 ~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 127 (368)
++++|++|+|+++++..+++++ ..++|.|++..++|+..........|............++. -|.
T Consensus 108 ~pe~I~it~G~~~al~~~~~~l--~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~------------l~~ 173 (431)
T d1m7ya_ 108 DPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQ------------ITE 173 (431)
T ss_dssp CGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSC------------CCH
T ss_pred CcceEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhccc------------ccH
Confidence 3689999999999999999876 35678999999988765433332333332221111111111 177
Q ss_pred HHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccccc----c-
Q 017633 128 SALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----F- 197 (368)
Q Consensus 128 ~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~~~----~- 197 (368)
+++++.+.+ ...+++++++...+|++|.+.+ .+.+++|+++|++||+++|+||+|.++ +.+.. .+... .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s-~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~ 252 (431)
T d1m7ya_ 174 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT-RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRN 252 (431)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTT
T ss_pred HHhhhhhhhhhhccCcceEEEecCcccccccccc-ccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcc
Confidence 888877764 2235665555544555565555 455999999999999999999999877 44322 11100 0
Q ss_pred --------CCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc-CCHHHHH
Q 017633 198 --------GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYL 267 (368)
Q Consensus 198 --------~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~ 267 (368)
+....+.|+||.++ +|+|+||++++++++..... . .......+...+.++.+.+..... +++.+..
T Consensus 253 ~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~---~-~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~ 328 (431)
T d1m7ya_ 253 CDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---K-MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAEN 328 (431)
T ss_dssp CSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH---H-HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH---H-Hhccccccccccchhhhhhccchhhhhhhhhh
Confidence 01112458999999 89999999998766543321 1 112223444544444443321110 2234444
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC------
Q 017633 268 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF------ 340 (368)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~------ 340 (368)
+++.+..++.+.+.+.+.+.....+..|.++|+++...... ....+..++++.|++ +||.+.||..
T Consensus 329 ~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~-------~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~ 401 (431)
T d1m7ya_ 329 HKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYEVHLNISPGSSCHCTEP 401 (431)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSS-------SSHHHHHHHHHHHHHTSCEECEEGGGGTCSST
T ss_pred hhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECcccccc-------CcccCHHHHHHHHHHHCCEEEEeccccCCCCC
Confidence 44444444555555555665544455577888887542110 123445678888875 5999998632
Q ss_pred CccccccC-CCHHHHHHHHHHHHHHHhh
Q 017633 341 EAGFTSLA-HSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 341 ~~~~~~~~-~~~~~i~~~~~~l~~~l~~ 367 (368)
.++|+++. .+++++++++++|++++++
T Consensus 402 ~~~Ri~~a~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 402 GWFRVCFANLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp TEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence 23677765 4788899999999999876
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=6.8e-28 Score=220.09 Aligned_cols=331 Identities=12% Similarity=0.113 Sum_probs=209.3
Q ss_pred CceeccCCCcH--------HHHHHHHHHHHcCC---CCCCCChhHHHHHHHHHhhC----C----CCCeEEEeCChHHHH
Q 017633 2 PQLIILFPSYL--------QVLAALGETMKKGT---SFGAPCLLENVLAEMVISAV----P----SIEMVRFVNSGTEAC 62 (368)
Q Consensus 2 ~~~~~~g~~~~--------~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~----~----~~~~v~~~~~gt~a~ 62 (368)
+.+++||.|.| .+.+++.+.+.... ..|.+.+...+|++++++++ + ++++|++|+|+++++
T Consensus 38 ~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al 117 (420)
T d1vp4a_ 38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL 117 (420)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH
T ss_pred CCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhH
Confidence 45677777633 35566666555421 12334455666777776653 2 478999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc-----C
Q 017633 63 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-----N 137 (368)
Q Consensus 63 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~-----~ 137 (368)
..++.+. ..++|.|++.+++|...... ....|..+...... ..+. |++.++..+.+ .
T Consensus 118 ~~~~~~~--~~~Gd~Vlv~~P~y~~~~~~-~~~~g~~~~~~~~~-~~~~--------------~~~~l~~~~~~~~~~~~ 179 (420)
T d1vp4a_ 118 DLIGKLF--LDDESYCVLDDPAYLGAINA-FRQYLANFVVVPLE-DDGM--------------DLNVLERKLSEFDKNGK 179 (420)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEEEEEEEE-TTEE--------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHhh--hccccccccccccccchhHH-HHHHhhhccccccc-cccc--------------ccchhhhhhhhhHHHhh
Confidence 9998765 35688999999988765333 33333322111110 0111 56666655432 1
Q ss_pred CCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCcc-c---cccCCCcchhhhhhhcc
Q 017633 138 KGEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-Q---EYFGVTPDLTTLGKIIG 211 (368)
Q Consensus 138 ~~~~~~~~~~~~~~~-~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~-~---~~~~~~~di~s~sK~~~ 211 (368)
..+++.+++.++++| +|. ..+.+.+++|+++|++|++++|+||+|.++ +.+.... . ...+...-+.++||.+.
T Consensus 180 ~~~~~~~~~~~~p~NPtG~-~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~ 258 (420)
T d1vp4a_ 180 IKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA 258 (420)
T ss_dssp GGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC
T ss_pred ccccceeeEecCCCCccch-hhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc
Confidence 124455554455444 555 455555999999999999999999999887 4443211 1 11222223457889888
Q ss_pred CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHHHHhcC-
Q 017633 212 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG- 286 (368)
Q Consensus 212 ~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~- 286 (368)
+|+|+||+++++++++.+.. .....+.+.+.+.++++...++.... ....+.++++.+.+++.|.+.+...+
T Consensus 259 ~G~RiG~~~~~~~~i~~l~~---~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g 335 (420)
T d1vp4a_ 259 PGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPG 335 (420)
T ss_dssp GGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred cccccccccccchhhhhhhh---hhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCC
Confidence 99999999999999888763 22334445677777666555542211 22345666777777777777655543
Q ss_pred CceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC--------CccccccC-CCHHHHHHH
Q 017633 287 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--------EAGFTSLA-HSSDDIQHT 357 (368)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~--------~~~~~~~~-~~~~~i~~~ 357 (368)
.....+..+.++|+.+.. ..+..++++.|.++||.+.||.. ..+|++++ .++++++++
T Consensus 336 ~~~~~p~gg~f~~~~~~~-------------~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a 402 (420)
T d1vp4a_ 336 VKWVKSEGGLFIWLTLPE-------------GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEG 402 (420)
T ss_dssp CEECCCSBSSEEEEECCT-------------TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHH
T ss_pred cEEecCCceEEEEEECCC-------------CCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHH
Confidence 333334556688887632 22345678889999999988732 23567765 588999999
Q ss_pred HHHHHHHHhh
Q 017633 358 ITAAEKVLRQ 367 (368)
Q Consensus 358 ~~~l~~~l~~ 367 (368)
+++|++++++
T Consensus 403 ~~rL~~~l~~ 412 (420)
T d1vp4a_ 403 IKRLREVVLE 412 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=2.1e-27 Score=216.26 Aligned_cols=324 Identities=12% Similarity=0.039 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHcCCCCC-CCChhHHHHHHHHHhhC----------C---CCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 12 LQVLAALGETMKKGTSFG-APCLLENVLAEMVISAV----------P---SIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~----------~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
+.+++++.+.+.....++ .+.....+|++++++++ + .+++|++|+|+++|+..++.++ ..++|.
T Consensus 50 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l--~~~Gd~ 127 (412)
T d1bw0a_ 50 AAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI--CDAGDY 127 (412)
T ss_dssp HHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH--CCTTCE
T ss_pred HHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhh--hccccc
Confidence 357788877776543333 34445666777666653 1 3679999999999999999766 357889
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCccc
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 157 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (368)
|++.+++|+.+. ......|..+...+.....+.. .+++++++.+. +.++++++...+|++|.+.
T Consensus 128 Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~~~~~~~------------~~~~~l~~~~~---~~~~~~~l~np~NPtG~~~ 191 (412)
T d1bw0a_ 128 ALVPQPGFPHYE-TVCKAYGIGMHFYNCRPENDWE------------ADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF 191 (412)
T ss_dssp EEEEESCCTHHH-HHHHHTTCEEEEEEEEGGGTTE------------ECHHHHHHHCC---TTEEEEEEESSCTTTCCCC
T ss_pred eeeeeccchhhh-hhhhccCccccccccccccccc------------hhhHHHHhhhh---ccccccccccccccccccc
Confidence 999999997764 3344444443322221111111 17888888776 4566665555555556555
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC-ccc-ccc---CCC---cchhhhhhhcc-CCccceeeeehHH---
Q 017633 158 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYF---GVT---PDLTTLGKIIG-GGLPVGAYGGRRD--- 224 (368)
Q Consensus 158 ~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~-~~~-~~~---~~~---~di~s~sK~~~-~G~~iG~v~~~~~--- 224 (368)
+.+.+++|+++|++|+++||+||+|.++ +.+.. ... ... ... .-+.++||.++ +|+|+||+++++.
T Consensus 192 -~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~ 270 (412)
T d1bw0a_ 192 -SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGN 270 (412)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCS
T ss_pred -hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhc
Confidence 4555999999999999999999999888 54432 111 111 111 11347899999 8999999987532
Q ss_pred ---HHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeccceEEE
Q 017633 225 ---IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGF 300 (368)
Q Consensus 225 ---~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~ 300 (368)
++..... ....+.+.++..++.+...+.. ..+++.+.+++..+..++.+.+.+.+. +.....+..|.++|.
T Consensus 271 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~ 345 (412)
T d1bw0a_ 271 GPSFLEGLKR----VGMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMS 345 (412)
T ss_dssp CHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEE
T ss_pred chhhhhhhcc----ccccccCCchhhhhhccccccc-ccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEE
Confidence 2222221 1112234455555544433321 112244444444444455555544433 333334455667777
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCC----CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.+..... .+..+..++++.|++ +||.+.||. ..++|+++..+++++++++++|++++++
T Consensus 346 ~~~~~~~--------~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 346 RIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp EECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eCChhhc--------CCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 7642211 112235788888876 599999873 3356788888999999999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.5e-27 Score=212.52 Aligned_cols=316 Identities=15% Similarity=0.115 Sum_probs=195.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhC----C---CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAV----P---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
++.+++++.++......| .+.....+|++.+++++ + +++++++|+|+++++..++... ..+++.|++..+
T Consensus 43 p~~~~~al~~~~~~~~~Y-~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l--~~~gd~V~i~~P 119 (389)
T d2gb3a1 43 PEVFFERIYENKPEVVYY-SHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI--ANPGDEILVLEP 119 (389)
T ss_dssp CTHHHHHHHHTCCSSCCC-CCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEES
T ss_pred CHHHHHHHHhcCCCCCCC-CCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc--ccCCCeEEEeCC
Confidence 456888887754433333 34444566666666543 3 4789999999999999988766 346789999999
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.|................. ......... +.+.+...+. ++++++++...+|++|.+. +.+.+
T Consensus 120 ~y~~~~~~~~~~g~~~~~~-~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~l~nP~NPtG~~~-s~~~~ 181 (389)
T d2gb3a1 120 FYANYNAFAKIAGVKLIPV-TRRMEEGFA-------------IPQNLESFIN---ERTKGIVLSNPCNPTGVVY-GKDEM 181 (389)
T ss_dssp CCTHHHHHHHHHTCEEEEE-ECCGGGTSC-------------CCTTGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHH
T ss_pred CCccccccccccCcccccc-ccccccccc-------------hhhhhhhhcc---cCccEEEeCCCCccccccc-hHHHH
Confidence 8876544443333222111 111111110 2222222222 4666666655555566655 55559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCccccccC--CCcchhhhhhhcc-CCccceeeeehHH-HHHHhcCCCCcccc
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGRRD-IMEMVAPAGPMYQA 238 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~--~~~di~s~sK~~~-~G~~iG~v~~~~~-~~~~~~~~~~~~~~ 238 (368)
++|+++|++||+++|+||+|.++ ..+......... ...-+.++||.++ +|+|+||++++.+ +.+... ....
T Consensus 182 ~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~----~~~~ 257 (389)
T d2gb3a1 182 RYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAM----KLAQ 257 (389)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHH----HHHH
T ss_pred HHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHh----hhhh
Confidence 99999999999999999999887 444332221111 1122458899998 7999999988554 444433 1123
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeccceEEEEeecCCCcccchhcccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSE 317 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+.++.+.+.+.++...+.. .+.+.+.+++..+..++.+.+.+.+.+.. ...+..+.++|+++.
T Consensus 258 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp-------------- 321 (389)
T d2gb3a1 258 GRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-------------- 321 (389)
T ss_dssp HSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS--------------
T ss_pred ccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCC--------------
Confidence 4445666777666555431 23344444445455555555555555543 234456677888762
Q ss_pred cHHHHHHHHHHHHc------CeeecCCC---------CCccccccCCCHHHHHHHHHHHHHHHhh
Q 017633 318 TTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 318 ~~~~~~~~~~l~~~------Gi~~~~~~---------~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
..++.++++.|+++ ||.+.|+. ..++|+++..+++++++++++|++++++
T Consensus 322 ~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~ 386 (389)
T d2gb3a1 322 VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM 386 (389)
T ss_dssp SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 22357888888764 67777652 2246778888999999999999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.9e-26 Score=202.65 Aligned_cols=299 Identities=13% Similarity=0.087 Sum_probs=189.5
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC----CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
|+|+ .++.+++++.+.+......++|.....+|++++++++. ..++|++|+|+++++..+++ ..|.|++
T Consensus 29 np~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~------~~d~v~i 101 (334)
T d2f8ja1 29 NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML------MFDRSVF 101 (334)
T ss_dssp CSSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH------HSSEEEE
T ss_pred CCCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh------hcccccc
Confidence 5555 56789999988887654444566677889999999874 47889999988888877654 2478999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++|.++...... .|..+...++....... + .. .++++++++...+|++|.+.+
T Consensus 102 ~~P~y~~~~~~~~~-~g~~~v~v~~~~~~~~~-------------~------~~---~~~~~~l~l~nP~NPtG~~~s-- 156 (334)
T d2f8ja1 102 FPPTYSCYRIFAKA-VGAKFLEVPLTKDLRIP-------------E------VN---VGEGDVVFIPNPNNPTGHVFE-- 156 (334)
T ss_dssp CSSCCHHHHHHHHH-HTCCEEECCCCTTSCCC-------------C------CC---CCTTEEEEEESSCTTTCCCCC--
T ss_pred ccccccccccchhc-cCCcccccccccccccc-------------c------cc---cccceEEEecccccccceeec--
Confidence 99988876544443 34433322221111100 0 01 124454544444455666676
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCcccc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQA 238 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~ 238 (368)
.+++.+ +.++++++|+||+|.++ ...............-+.|+||.++ +|+|+||+++++++++.+....
T Consensus 157 --~~~l~~-~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~----- 228 (334)
T d2f8ja1 157 --REEIER-ILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR----- 228 (334)
T ss_dssp --HHHHHH-HHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHS-----
T ss_pred --HHHhhc-cccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhh-----
Confidence 444444 45689999999999765 2222222222222233568999999 8999999999999988886422
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccccc
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 318 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.+++.+..++.++.+.++. .++.+...+..+.-++.+.+.+.+.+.. ..++.|+++|+.+ ..
T Consensus 229 ~~~~~s~~~~~~a~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g~~-~~~~~g~f~~~~~--------------~~ 290 (334)
T d2f8ja1 229 LPFNVSYVSQMFAKVALDH---REIFEERTKFIVEERERMKSALREMGYR-ITDSRGNFVFVFM--------------EK 290 (334)
T ss_dssp CTTCSCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHTCE-ECCCCSSEEEEEC--------------CH
T ss_pred cccccchhhhhhccccccc---ccchhhHHHHHHHHHHHHHHHHHHCCCe-ECCCCceEEEEEC--------------CC
Confidence 3446677888777766652 2233333333333334444444445543 3345566777664 33
Q ss_pred HHHHHHHHHHHHcCeeecCCCCCccccccCCCHHHHHHHHHHHHH
Q 017633 319 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 319 ~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
.+..++++.|+++||.++++. .++|+++. +.+|+++++++|++
T Consensus 291 ~~~~~~~~~L~~~GI~vr~~~-~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 291 EEKERLLEHLRTKNVAVRSFR-EGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp HHHHHHHHHHHHTTEECEEET-TEEEEECC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEECCCC-CeEEEEcC-CHHHHHHHHHHHhc
Confidence 467889999999999997653 45677654 67788999888875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.6e-25 Score=199.47 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=181.4
Q ss_pred CCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCc-eEEEEcCCCCCCchhhhhhcCCCccccCCC
Q 017633 29 GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE-RIIKFEGCYHGHADPFLVKAGSGVATLGLP 106 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (368)
.||+....+|+++++++++ ++++|++|+|+++++..+++.. ..++| .|++.+++|..+ .......|..+.....
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~--~~pgd~~Vl~~~P~y~~~-~~~~~~~g~~v~~~~~- 127 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF--CEPGKDAILYCPPTYGMY-SVSAETIGVECRTVPT- 127 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH--CCTTTCEEEECSSSCTHH-HHHHHHHTCEEEECCC-
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHh--hccccccccccccccccc-hhhhhccCceeecccc-
Confidence 3566667899999999998 8899999999999999999866 23455 466666666554 3444444554433222
Q ss_pred CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch
Q 017633 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186 (368)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~ 186 (368)
.+++.. |+++++..+. +++++++.+.+|++|.+.+ ++.++.+.+.++ ++.++|+||+|.+|
T Consensus 128 -~~~~~~------------d~~~l~~~~~----~~~~v~~~~pnNPtG~~~~-~~~~~~~~~~~~-~~~~~iidd~~~~f 188 (354)
T d1fg7a_ 128 -LDNWQL------------DLQGISDKLD----GVKVVYVCSPNNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEF 188 (354)
T ss_dssp -CTTSCC------------CHHHHHTSCT----TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGG
T ss_pred -cccccc------------chhhhhhccc----ccceeeccCCCccceeEee-eccccccccccc-ccccccccccchhh
Confidence 122111 7888876553 6777777777777776665 444777777665 67888888888777
Q ss_pred -hcccCc-cccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCC-
Q 017633 187 -RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG- 262 (368)
Q Consensus 187 -~~g~~~-~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~- 262 (368)
...... .........-+.||||.++ +|+|+||+++++++++.+... ...+..+.+++..+.+++..-..+.
T Consensus 189 ~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~ 263 (354)
T d1fg7a_ 189 CPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKV-----IAPYPLSTPVADIAAQALSPQGIVAM 263 (354)
T ss_dssp SGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHH-----SCSSCSCHHHHHHHHHHTSHHHHHHH
T ss_pred ccccccchhhcccccceEEeCCccccCCCccccccccccchhhhhhhhh-----cCccchhhHHHHHHHHHHhhhccccc
Confidence 332221 1111111122458999999 999999999999998887632 2344556666655554432111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC
Q 017633 263 --TYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 339 (368)
Q Consensus 263 --~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~ 339 (368)
..+++.++++.+.+. +.+.+.. ...+..++++|+.+. ++.++++.|+++||.+++++
T Consensus 264 ~~~~~~~~~~r~~l~~~----l~~~~~~~~~~p~~~~f~~~~~~----------------~~~~~~~~L~~~gIlvr~~~ 323 (354)
T d1fg7a_ 264 RERVAQIIAEREYLIAA----LKEIPCVEQVFDSETNYILARFK----------------ASSAVFKSLWDQGIILRDQN 323 (354)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHSTTEEEECCCSSSEEEEEET----------------THHHHHHHHHHTTEECEECT
T ss_pred cccchhhhhHHHHHHHH----HHhCCCcceeCCCCceEEEEeCC----------------CHHHHHHHHHHCCcEEecCC
Confidence 122233333333333 3344433 234556777887752 24678999999999998764
Q ss_pred C-----CccccccCCCHHHHHHHHHHHHH
Q 017633 340 F-----EAGFTSLAHSSDDIQHTITAAEK 363 (368)
Q Consensus 340 ~-----~~~~~~~~~~~~~i~~~~~~l~~ 363 (368)
. .++|+++ .+++|+++++++|+.
T Consensus 324 ~~~~~~~~lRisi-gt~ee~~~~l~aLka 351 (354)
T d1fg7a_ 324 KQPSLSGCLRITV-GTREESQRVIDALRA 351 (354)
T ss_dssp TSTTCTTEEEEEC-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEe-CCHHHHHHHHHHHhh
Confidence 3 2345554 478899999999874
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.8e-25 Score=195.79 Aligned_cols=324 Identities=15% Similarity=0.065 Sum_probs=201.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCc
Q 017633 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 89 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 89 (368)
.+|++++||.++... ...+++.+...+|+++++++++ .+++++++|||+|+..+++.++ ..++.+++.+..++...
T Consensus 12 p~p~v~~A~~~a~~g-~~~yg~~p~~~~le~~lA~~~G-~~~~~~~~sGt~A~~~al~a~~--~~g~~~~~~~~~~~~~~ 87 (343)
T d1m6sa_ 12 PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETFG-KEAALFVPSGTMGNQVSIMAHT--QRGDEVILEADSHIFWY 87 (343)
T ss_dssp CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHHC--CTTCEEEEETTCHHHHS
T ss_pred CCHHHHHHHHhhhcC-CcccCCCHHHHHHHHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHh--ccCCceeccccccceee
Confidence 578999999765322 3334467888999999999996 4578888999999999998773 35677777766554332
Q ss_pred hhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC---CCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 017633 90 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAI 166 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~i 166 (368)
................+..... .|++.+++.+... ..++..+++....++.|....+.+.+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 154 (343)
T d1m6sa_ 88 EVGAMAVLSGVMPHPVPGKNGA-------------MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEI 154 (343)
T ss_dssp STTHHHHHTCCEEEEECEETTE-------------ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred ecccccccccceeeccccccCc-------------cCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHH
Confidence 2222221111111001111111 1788888888742 23566677777776766677777779999
Q ss_pred HHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCCCccccccCCCC
Q 017633 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244 (368)
Q Consensus 167 ~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~ 244 (368)
+++|++||+++++|+++.++ ...............+..+++|..+ +|.+.+++....+.+......+ ...+.+.+..
T Consensus 155 ~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (343)
T d1m6sa_ 155 CTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKAR-KMLGGGMRQA 233 (343)
T ss_dssp HHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHH-HHHTCCCSST
T ss_pred HHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhC-cccccccchh
Confidence 99999999999999999766 3222221111112223445566665 4567777777776655444211 1122222222
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHH
Q 017633 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 324 (368)
Q Consensus 245 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (368)
...++...........+.+...++...+.+.+..+..... ..+...+++++.+.. ....+.++
T Consensus 234 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~------------~~~~a~~l 296 (343)
T d1m6sa_ 234 --GVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVN---PEDVKTNMVILRTDN------------LKVNAHGF 296 (343)
T ss_dssp --HHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCC---GGGCCSSEEEEECTT------------SSSCHHHH
T ss_pred --HHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCcc---CCCCCceEEEEEeCC------------CcccHHHH
Confidence 2222222222222345566666777777777766532211 112234566666532 12235789
Q ss_pred HHHHHHcCeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 325 YRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 325 ~~~l~~~Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++.|+++||.+++.+.+.+|+ +..+|+|||++++++|+++++++
T Consensus 297 ~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 297 IEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp HHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999988777764 67789999999999999999874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.92 E-value=9.4e-25 Score=198.47 Aligned_cols=322 Identities=11% Similarity=-0.010 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHcC--CCCCCCChhHHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHH-----hcCC
Q 017633 12 LQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARA-----FTGR 75 (368)
Q Consensus 12 ~~v~~a~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~-----~~~~ 75 (368)
|.|+++......+. .+.|.+.....+|++++++++. +...++.+.+++.++..+...... ..++
T Consensus 51 ~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pG 130 (412)
T d1ajsa_ 51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD 130 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCC
T ss_pred HHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCC
Confidence 45666655544332 2235577778888888888752 233466777888888877744432 2578
Q ss_pred ceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 76 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 76 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
|.|++.+++|..+...+...++..+....+........ |.+.+++.+.+..++++++++.+.+|++|.
T Consensus 131 d~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~------------d~~~~~~~~~~~~~~~~~il~~~P~NPTG~ 198 (412)
T d1ajsa_ 131 TPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGL------------DLQGFLSDLENAPEFSIFVLHACAHNPTGT 198 (412)
T ss_dssp SCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEE------------CHHHHHHHHHHSCTTCEEEEESSSCTTTCC
T ss_pred CEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccc------------cHHHHHHHHHhccCCcEEEEecCCCCCcCC
Confidence 99999999997654444443334333332222222111 788887777765567777777666666666
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccC---ccc-ccc---CCCcchhhhhhhcc-CCccceeeeehHHHH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQ-EYF---GVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 226 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~---~~~-~~~---~~~~di~s~sK~~~-~G~~iG~v~~~~~~~ 226 (368)
+++ ++.+++|+++|++||+++|+||+|.++ +.+.. ... ... ....-+.++||.++ +|+|+||+++.....
T Consensus 199 v~s-~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~ 277 (412)
T d1ajsa_ 199 DPT-PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEP 277 (412)
T ss_dssp CCC-HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSH
T ss_pred CCC-HHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHH
Confidence 555 555999999999999999999999887 44321 111 111 11222457899999 799999998865433
Q ss_pred HHhcCC----CCccccccCCCCHHHHHHHHHHHHHHc-c-------CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeec
Q 017633 227 EMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLK-E-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 294 (368)
Q Consensus 227 ~~~~~~----~~~~~~~t~~~~~~~~~a~~~~l~~~~-~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 294 (368)
+.+... ...........+.+++.++...+..-. . +.+++++.++++.+.+.|++......+.......
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~ 357 (412)
T d1ajsa_ 278 DSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQI 357 (412)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCC
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCC
Confidence 222110 011122333445566655554443110 0 1123334444444444444432111111112233
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHH-HHcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHHhhC
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~ 368 (368)
|.|.|+.+ . .+++..| .++||++.|++ |++++ .+++++++++++|+++++++
T Consensus 358 G~F~~~~l--------------s----~~~v~~L~~e~gV~~vpg~----Ri~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 358 GMFSFTGL--------------N----PKQVEYLINQKHIYLLPSG----RINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp SSEEECCC--------------C----HHHHHHHHHTTCEECCTTS----EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred eEEEecCC--------------C----HHHHHHHHHhCCEEEeCCC----eEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 44444322 1 2444555 56799999986 66653 68899999999999999875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.92 E-value=3.2e-25 Score=200.89 Aligned_cols=318 Identities=13% Similarity=0.046 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC-------CCCeEEEeCC--hHHHHHHHHHHHHH-hcCCceEEE
Q 017633 12 LQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP-------SIEMVRFVNS--GTEACMGVLRLARA-FTGRERIIK 80 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~--gt~a~~~al~~~~~-~~~~~~vi~ 80 (368)
|.|+++..+.+.+...+ |.+.....+|++++++++. ..+.++.+.+ |+.++.....++.. ..++|.|++
T Consensus 49 ~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv 128 (401)
T d7aata_ 49 NCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYL 128 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEE
Confidence 56788877777665443 4566777888888888652 2455555432 22223222222221 357899999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++.|+.+...+. ..|.++...++....+.. .+++.+++.+....++++++++++.+|++|.+++ .
T Consensus 129 ~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s-~ 194 (401)
T d7aata_ 129 PKPSWGNHTPIFR-DAGLQLQAYRYYDPKTCS------------LDFTGAMEDISKIPEKSIILLHACAHNPTGVDPR-Q 194 (401)
T ss_dssp EESCCTTHHHHHH-HTTCEEEEEECEETTTTE------------ECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCC-H
T ss_pred ecCCCcchhhHHH-HcCCeEEEEecccccccc------------ccHHHHHHHHhcCCCceEEEEecCCCCCccccCC-H
Confidence 9999988754444 444433322221111111 1688888888765567777777666666776555 4
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-c---ccccCC---Ccchhhhhhhcc-CCccceeeeehHHHHHHhcC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A---QEYFGV---TPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~---~~~~~~---~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~ 231 (368)
+.+++|+++|++|++++|+||+|.++ +.+... . ...... ...+.++||.++ +|||+||++++..+.+....
T Consensus 195 e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~ 274 (401)
T d7aata_ 195 EQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKR 274 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHH
Confidence 55999999999999999999999888 443211 1 111111 222458999999 89999999887654443321
Q ss_pred CC----CccccccCCCCHHHHHHHHHHHHH--Hcc------CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEE
Q 017633 232 AG----PMYQAGTLSGNPLAMTAGIHTLKR--LKE------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 299 (368)
Q Consensus 232 ~~----~~~~~~t~~~~~~~~~a~~~~l~~--~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (368)
.. ..........+.+.+.++...++. +.+ +.+++++.++++.+.+.|++.+....+....+..|.|.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~ 354 (401)
T d7aata_ 275 VESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCF 354 (401)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEE
T ss_pred HHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEe
Confidence 00 011122334555666655444431 000 112233344444444444443211111112334455656
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCccccccC-CCHHHHHHHHHHHHHHH
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVL 365 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~~-~~~~~i~~~~~~l~~~l 365 (368)
+.+. .+++++|+ ++||++.||+ |++++ .++++|+.+.++|.+++
T Consensus 355 ~~ls------------------~e~~~~L~~e~gV~~~pg~----Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 355 TGLK------------------PEQVERLTKEFSIYMTKDG----RISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred cCCC------------------HHHHHHHHHhCCEEECCCc----EEEeccCCHHHHHHHHHHHHHHh
Confidence 4331 34566664 5699999984 66544 68889999999999876
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.92 E-value=3.5e-24 Score=194.43 Aligned_cols=320 Identities=13% Similarity=0.052 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHc-C-CCCCCCChhHHHHHHHHHhhCC-------CCCe--EEEeCChHHHHHHHHHHHHHhcCCceEEE
Q 017633 12 LQVLAALGETMKK-G-TSFGAPCLLENVLAEMVISAVP-------SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIK 80 (368)
Q Consensus 12 ~~v~~a~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~-------~~~~--v~~~~~gt~a~~~al~~~~~~~~~~~vi~ 80 (368)
|.|+++....... . .+.|.+.....+|++++++++. ..+. +..+.+|..++..++.......++|.|++
T Consensus 50 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vli 129 (412)
T d1yaaa_ 50 PSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYL 129 (412)
T ss_dssp HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEec
Confidence 4577665443332 2 2235566778888888888652 1222 33334455555555543333457899999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++|..+...+... |..+...++....+.. .+.+.++..+...++.++++++++.+|++|.+++ +
T Consensus 130 p~P~~~~y~~~~~~~-g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s-~ 195 (412)
T d1yaaa_ 130 SKPTWANHMAIFENQ-GLKTATYPYWANETKS------------LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPT-S 195 (412)
T ss_dssp EESCCTTHHHHHHTT-TCCEEEEECEETTTTE------------ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCC-H
T ss_pred ccccCchhHHHHHHc-CCceeccccccccccc------------ccchhhhcccccCCCceEEEEecCCCCCccccCC-H
Confidence 999887765444333 3332222111111110 1678888888766566777777666666676555 5
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccCc-c------ccccCCC---cchhhhhhhcc-CCccceeeeehHHHHHH
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A------QEYFGVT---PDLTTLGKIIG-GGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~-~------~~~~~~~---~di~s~sK~~~-~G~~iG~v~~~~~~~~~ 228 (368)
+++++|+++|++|++++|+||+|.++ +.+... . ....+.. .-+.++||.++ +|+|+||++++.++++.
T Consensus 196 ~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~ 275 (412)
T d1yaaa_ 196 EQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQ 275 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTT
T ss_pred HHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhh
Confidence 55999999999999999999999988 433210 0 0111221 22458999999 89999999876432211
Q ss_pred -------hcCC-CCccccccCCCCHHHHHHHHHHHHHHc-c-------CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 017633 229 -------VAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLK-E-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 292 (368)
Q Consensus 229 -------~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~-~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 292 (368)
+... .........+++.+++.++...++.-. . +.+.+.++++++.+.+.|++.+....+....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~ 355 (412)
T d1yaaa_ 276 NKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN 355 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCC
Confidence 1100 011223445667777777766554110 0 12334444555555555544422111221222
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHHHhh
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~l~~ 367 (368)
..|.+.|+.+ + .+++++|+ ++||++.+++ |+++ ..++++++.+.++|.++++.
T Consensus 356 ~gG~F~~~~l--------------s----~e~~~~L~~e~~V~~~~g~----Ris~~g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 356 QCGMFSFTGL--------------T----PQMVKRLEETHAVYLVASG----RASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp CCSSEEECCC--------------C----HHHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred CceEEEecCc--------------C----HHHHHHHHHhCCEEECCCC----EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 3344544322 1 34566664 5699998875 5554 36888899999999998864
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=9.3e-25 Score=197.52 Aligned_cols=318 Identities=14% Similarity=0.014 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC---------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEE
Q 017633 12 LQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP---------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 81 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~ 81 (368)
|.|++++.+.+++...+ |.+.....+|++++++++. ....+..+.+|+.+..+++.......+++.|++.
T Consensus 47 ~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp 126 (396)
T d2q7wa1 47 TSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS 126 (396)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEe
Confidence 67888888877765433 5566777888888887651 1234556777777777666544344678899999
Q ss_pred cCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHH
Q 017633 82 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (368)
+++|..+...+...++..+..+......... +...+++...+..++++++++.+.+|++|.++ +.+
T Consensus 127 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~-s~e 192 (396)
T d2q7wa1 127 NPSWPNHKSVFNSAGLEVREYAYYDAENHTL-------------DFDALINSLNEAQAGDVVLFHGCCHNPTGIDP-TLE 192 (396)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECEETTTTEE-------------CHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHH
T ss_pred cCCCccchHHHHHcCCeeEeccccccccccc-------------ccchHHHHHHHhccCcEEEEecCCcCCcCeec-CHH
Confidence 9988876544444433333222222211111 56666666665445666666665555566555 455
Q ss_pred HHHHHHHHHHHhCCEEEEehhhhch-hcccC--cccc----ccCCCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC
Q 017633 162 FLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQE----YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG 233 (368)
Q Consensus 162 ~l~~i~~l~~~~~~~li~De~~~~~-~~g~~--~~~~----~~~~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~ 233 (368)
.+++|+++|++|++++|+||+|.++ +.+.. .... .......+.++||.++ +|+|+||++++...++......
T Consensus 193 ~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~ 272 (396)
T d2q7wa1 193 QWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAF 272 (396)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhh
Confidence 5999999999999999999999988 43321 1111 1112233457899998 8999999988655443332100
Q ss_pred C----ccccccCCCCHHHHHHHHHHHHH------Hcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEE
Q 017633 234 P----MYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 301 (368)
Q Consensus 234 ~----~~~~~t~~~~~~~~~a~~~~l~~------~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (368)
. .......+.+...+.++...+.. ..+ +.++++++++++.+.+.|++......+.......|.|.|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ 352 (396)
T d2q7wa1 273 SQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSG 352 (396)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECC
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeC
Confidence 0 01112223455555554433320 000 12234455555555555555321111111233445565543
Q ss_pred eecCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHHH
Q 017633 302 FTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~l 365 (368)
+. .+++++|+ ++||++.+++ |+++ ..++++|++++++|.+++
T Consensus 353 l~------------------~e~~~~L~~e~gV~~~~g~----Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 353 LT------------------KEQVLRLREEFGVYAVASG----RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred CC------------------HHHHHHHHHhCCEEECCCC----EEEecCCCHHHHHHHHHHHHHhC
Confidence 31 34566665 5699998876 5544 358889999999998874
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3.8e-24 Score=193.45 Aligned_cols=318 Identities=13% Similarity=-0.002 Sum_probs=185.1
Q ss_pred cHHHHHHHHHHHHcCCCC-CCCChhHHHHHHHHHhhCC------CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 11 YLQVLAALGETMKKGTSF-GAPCLLENVLAEMVISAVP------SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
.|.|++++.+.+++...+ |.+.....+|++++++++. .....+++.+|+.+..+++.+.....+++.|++.++
T Consensus 46 ~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p 125 (394)
T d2ay1a_ 46 MRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDP 125 (394)
T ss_dssp CHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecc
Confidence 368999988877764433 5567778888888888752 245566666788777766655444567888999888
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 163 (368)
.|..+...+...+...+............ +.+++++.....+++++++++.+.+|++|.++ +.+.+
T Consensus 126 ~~~~y~~~~~~~g~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~-s~e~~ 191 (394)
T d2ay1a_ 126 TWPNHVSIMNFMGLPVQTYRYFDAETRGV-------------DFEGMKADLAAAKKGDMVLLHGCCHNPTGANL-TLDQW 191 (394)
T ss_dssp CCHHHHHHHHHHTCCEEEEECEETTTTEE-------------CHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC-CHHHH
T ss_pred cccchHHHHHHcCCEEEEecccchhcccc-------------cchhHHHHHhhcccCcEEEEeCCCCCCCCCCC-CHHHH
Confidence 87765444443333322222111111111 56777777766545666666655555566555 55559
Q ss_pred HHHHHHHHHhCCEEEEehhhhch-hcccCc--ccc---ccC-CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCCC--
Q 017633 164 NAIRRITKENGALLIFDEVMTGF-RLAYGG--AQE---YFG-VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAG-- 233 (368)
Q Consensus 164 ~~i~~l~~~~~~~li~De~~~~~-~~g~~~--~~~---~~~-~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~-- 233 (368)
++|+++|++|++++|+||+|.++ +.+... ... ..+ ....+.++||.++ +|+|+||+.+.....+......
T Consensus 192 ~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~ 271 (394)
T d2ay1a_ 192 AEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGA 271 (394)
T ss_dssp HHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhh
Confidence 99999999999999999999888 433211 000 011 1223457999998 7999999987654433222100
Q ss_pred --CccccccCCCCHHHHHHHHHHHH--HHc----c--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEee
Q 017633 234 --PMYQAGTLSGNPLAMTAGIHTLK--RLK----E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303 (368)
Q Consensus 234 --~~~~~~t~~~~~~~~~a~~~~l~--~~~----~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (368)
..........+...++.+...+. .+. + +.+.+++.++++.+.+.|++.+....+....+..|.|.|+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls 351 (394)
T d2ay1a_ 272 MAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT 351 (394)
T ss_dssp HHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC
T ss_pred hHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC
Confidence 00111122233344433332222 000 0 1234445555555555555543221122223344556565431
Q ss_pred cCCCcccchhcccccHHHHHHHHHHH-HcCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHH
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKV 364 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~ 364 (368)
.+++++|+ ++||++.+++ |+++ .+++++++++.++|.++
T Consensus 352 ------------------~~~~~~L~~~~~V~~~~g~----Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 352 ------------------PEQVKRIKEEFGIYMVGDS----RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp ------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHhCCEEecCCC----EEEecCCCHHHHHHHHHHHHHh
Confidence 34566775 5699999975 5543 46889999999888875
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-23 Score=189.48 Aligned_cols=318 Identities=12% Similarity=-0.005 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHc--CCCCCCCChhHHHHHHHHHhhCC-------CCCeEEEeCChHHHHHHHHHHHH--HhcCCceEEE
Q 017633 12 LQVLAALGETMKK--GTSFGAPCLLENVLAEMVISAVP-------SIEMVRFVNSGTEACMGVLRLAR--AFTGRERIIK 80 (368)
Q Consensus 12 ~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~-------~~~~v~~~~~gt~a~~~al~~~~--~~~~~~~vi~ 80 (368)
|.|++|....... ....|.+.....+|++++++++. ..++++.+.+++.+...++.+.. ...++|.|++
T Consensus 47 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv 126 (397)
T d3tata_ 47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWV 126 (397)
T ss_dssp HHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEE
T ss_pred HHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCccee
Confidence 4566665543332 23335677888899999998763 25778777766665554442221 2357889999
Q ss_pred EcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCH
Q 017633 81 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.+++|..+...+...++.....+......... |.+++.+.+...+++++++++.+.+|++|.++ ++
T Consensus 127 ~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~-s~ 192 (397)
T d3tata_ 127 SDPTWENHVAIFAGAGFEVSTYPWYDEATNGV-------------RFNDLLATLKTLPARSIVLLHPCCHNPTGADL-TN 192 (397)
T ss_dssp CSSCCTTHHHHHHTTTCCCEECCCCCTTTSSC-------------CHHHHHHHHTTCCSSCCCEECSSSCSSSCCCC-CH
T ss_pred cccCccccHHHHHHcCCEEEEEecchhhcccc-------------chHHHHHHhhhcccccEEEEecCCCCCCCeeC-CH
Confidence 99999887655544443322222112222211 67777777765545566666555555566555 55
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hcccC--ccc-cccC---CCcchhhhhhhcc-CCccceeeeehHHHHHHhcCC
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQ-EYFG---VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~--~~~-~~~~---~~~di~s~sK~~~-~G~~iG~v~~~~~~~~~~~~~ 232 (368)
+.+++|+++|++|++++|+||+|.++ +.+.. ... ...+ ....+.++||.++ +|||+||+++....++.....
T Consensus 193 ~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~ 272 (397)
T d3tata_ 193 DQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRV 272 (397)
T ss_dssp HHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHH
T ss_pred HHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHHHHHH
Confidence 55999999999999999999999888 43321 111 1111 2234568999999 799999997754332221100
Q ss_pred ----CCccccccCCCCHHHHHHHHHHHHHHc-cCCHHHHHH---HHHHHHHHHHHHHHHhcC----CceEEeeccceEEE
Q 017633 233 ----GPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLN---KITGELTQGIIDAGKKAG----HAICGGYISGMFGF 300 (368)
Q Consensus 233 ----~~~~~~~t~~~~~~~~~a~~~~l~~~~-~~~~~~~~~---~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~ 300 (368)
.........+.+...+.++...+..-. ..++.+.++ ++.+..++.+.+.+...+ +.......|.|.|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~ 352 (397)
T d3tata_ 273 LGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYT 352 (397)
T ss_dssp HHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCC
T ss_pred HHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEec
Confidence 001122333445555555544443110 012223333 333333333333333222 12223344555554
Q ss_pred EeecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCCCcccccc-CCCHHHHHHHHHHHHHHH
Q 017633 301 FFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~l 365 (368)
.+. .++++.|++ +||++.+++ |+++ ..+++++++++++|.+++
T Consensus 353 ~ls------------------~e~~~~L~~e~~V~l~~g~----Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 353 GLS------------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp CCC------------------HHHHHHHTTTTCEECCSSS----CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred CcC------------------HHHHHHHHHhCCEEeCCCC----EEEeccCCHHHHHHHHHHHHHhC
Confidence 331 455777765 599999985 5543 568899999999998764
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=3.6e-22 Score=176.34 Aligned_cols=320 Identities=12% Similarity=-0.003 Sum_probs=182.7
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 84 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~ 84 (368)
++.++.+|+|++||.++.......++.++...+++++++++++..+.++|++|||+|++.++..++. ..+.+++.. .
T Consensus 10 ~n~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~--~~~~~~~~~-~ 86 (345)
T d1v72a1 10 DNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP--PWGNIYCHP-A 86 (345)
T ss_dssp GGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC--TTEEEEECT-T
T ss_pred CCCCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh--cCCcccccc-c
Confidence 3444579999999988654422233577889999999999998667899999999999999976632 344444433 2
Q ss_pred CCCCch---hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCC---CCeEEEEEcccCCCCCcccC
Q 017633 85 YHGHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~---~~~~~~~~~~~~~~~g~~~~ 158 (368)
.|.+.. ......+...... .+...+ ..+++++++.+.... ..+...++.....+.+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
T d1v72a1 87 SHINNDECGAPEFFSNGAKLMT-VDGPAA-------------KLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 152 (345)
T ss_dssp SHHHHSSTTHHHHHTTSCEEEE-CCCGGG-------------CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCC
T ss_pred cceeeechhhHHHhcCcccccc-cccccc-------------cccHHHhhhhhcccccccccccceeeeeeccccccccc
Confidence 222211 1111122211110 011111 117899999987521 23455555555555555566
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC--CcchhhhhhhccCCccceeeee-hHHHHHHhcCCCC
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPDLTTLGKIIGGGLPVGAYGG-RRDIMEMVAPAGP 234 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~--~~di~s~sK~~~~G~~iG~v~~-~~~~~~~~~~~~~ 234 (368)
+.++++++.++|++||+++++|++|.+. ............. ..+..+++|..+++...+.... .......... ..
T Consensus 153 ~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 231 (345)
T d1v72a1 153 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSY-RR 231 (345)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHH-HH
T ss_pred cchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhccc-cc
Confidence 6666999999999999999999999765 3332222222222 2334456666654433444333 2222211110 00
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeccceEEEEeecCCCcccchh
Q 017633 235 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 235 ~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.....+ ......++.++...+. +...........++.+.+...+...+..... +..++++++.+.
T Consensus 232 ~~~~~~---~~~~~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~---------- 297 (345)
T d1v72a1 232 KRAGHL---SSKMRFLSAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD---------- 297 (345)
T ss_dssp HHTTCC---CSSTHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----------
T ss_pred cccccc---cchhhHHhhhhHHHHH-HhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC----------
Confidence 111122 2222222233333332 3344444555555555555555555433222 334556666552
Q ss_pred cccccHHHHHHHHHHHHcCeeecCCC--CCccc--cccCCCHHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~~~~--~~~~~~~~~i~~~~~~l~~~ 364 (368)
.++++.|+++|+.+.+.. ...+| ++..+|+|||+++++.|+++
T Consensus 298 --------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 298 --------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp --------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456788999999886543 33344 46788999999999999875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=4.4e-21 Score=171.23 Aligned_cols=328 Identities=13% Similarity=0.083 Sum_probs=186.3
Q ss_pred CCCcHHHHHHHHHHHHcCCC----------CCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCce
Q 017633 8 FPSYLQVLAALGETMKKGTS----------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 77 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~----------~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~ 77 (368)
|.-+|+.++++.++.+.... ....++.++.+++.++++++ .+++++|+||++|+..++... ..++|.
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g-~e~~~~t~g~t~a~~~~~~al--~~~gd~ 88 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG-CDVARVTNGAREAKFAVMHSL--AKKDAW 88 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT-SSEEEEESSHHHHHHHHHHHH--CCTTCE
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC-cCEEEEECcHHHHHHHHHHHH--hCCCcE
Confidence 45678888888775432110 01112467888999999985 578999999999999999766 357788
Q ss_pred EEEEcCCCCCCchhhhhhcCCCccccCCCCC-CCCCCCCCCcccccCCCCHHHHHHHHHcCC--CCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~~~~~~--~~~~~~~~~~~~~~~g 154 (368)
||+..+.|+.... .....|..+...+.... ++.. |++++++++++.. .++++++++.+++++|
T Consensus 89 Vi~~~~~h~s~~~-~~~~~g~~v~~v~~~~~~~~~i-------------~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG 154 (364)
T d2e7ja1 89 VVMDENCHYSSYV-AAERAGLNIALVPKTDYPDYAI-------------TPENFAQTIEETKKRGEVVLALITYPDGNYG 154 (364)
T ss_dssp EEEETTCCHHHHH-HHHHTTCEEEEECCCCTTTCCC-------------CHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred EEeecccccccch-HHHhccceEEEeeecccccccc-------------CHHHHHhhhhhhcccCCceEEEeecCCCCCc
Confidence 8887766654433 33444444332222111 1111 7999999997532 3467777777778889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCC
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 234 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~ 234 (368)
.+.+ +++|+++|++||+++++|++|+... .......++.+.-+.|++|.++++-++|++++++++.+.+.....
T Consensus 155 ~~~~----l~~I~~ia~~~~i~livD~a~~~g~--~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~ 228 (364)
T d2e7ja1 155 NLPD----VKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSE 228 (364)
T ss_dssp CCCC----HHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCS
T ss_pred eeec----chhheeccccccchhhccccchhhh--hhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhcc
Confidence 8888 9999999999999999999995211 112233344433344677999965589999998887766543211
Q ss_pred ccc-----cccCCCCHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCceEE-eecc-ceEEEEeecC
Q 017633 235 MYQ-----AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYIS-GMFGFFFTEG 305 (368)
Q Consensus 235 ~~~-----~~t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 305 (368)
... ............++.++++.+.+ +.+. ...++.+++.+.+.++ +..... .... ....+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~----g~~~~~~~~~~~~~~~~~~~~~ 303 (364)
T d2e7ja1 229 KYKNKEVELLGCTARGATIITLMASFPHVRERIKRWD-EEVEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHAEVL 303 (364)
T ss_dssp SCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEECHHH
T ss_pred ccCcccccccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc----CCeecCCCCCCcceEEEeccch
Confidence 110 00111222333344444443322 2232 3334555566666553 221110 0111 1112211000
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCC-CCcccc-ccCCCHHHHHHHHHHHHHHHhhC
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFT-SLAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~~~~~-~~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
.... .. .......+...+.++|+.....+ ...+++ .+..+++|+++++++|+++++++
T Consensus 304 --~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 304 --YEIS-KK--AKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp --HHHH-HH--SSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --HHHH-HH--hhccchHHHHHHHhcCCceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 0000 00 00001234455667777654333 222333 45679999999999999999874
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=1.1e-21 Score=174.84 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEc-CCCCCC
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE-GCYHGH 88 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~-~~~~~~ 88 (368)
+++.++..+.++. ++.+....+++++..++.++ +.+++++++||++|+..++..+ .+++.|++.+ ...|..
T Consensus 32 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---~~~~~vi~~~~~~~~~~ 105 (366)
T d2aeua1 32 FLIDEKDKALLNT---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPS 105 (366)
T ss_dssp CCCCHHHHHHHTS---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTH
T ss_pred CCccHHHHHHHHH---hcCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh---CCCCEEEEecCCCcchh
Confidence 3444444444433 33344556777777777775 4678999999999999988755 3566666653 456666
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC-CcccCCHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS-GFIAPKPDFLNAIR 167 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~l~~i~ 167 (368)
+...+.+.|.+. ++++|++++++.++ +++++++++.+++++ +...+ +++|+
T Consensus 106 ~~~~~~l~g~~~---------------------v~~~d~e~l~~~i~---~~tk~i~~~~p~n~~~~~~~~----l~~i~ 157 (366)
T d2aeua1 106 IERSCKIVNAKY---------------------FESDKVGEILNKID---KDTLVIITGSTMDLKVIELEN----FKKVI 157 (366)
T ss_dssp HHHHHHHTTCEE---------------------EEESCHHHHHTTCC---TTEEEEEECBCTTSCBCCHHH----HHHHH
T ss_pred HHHHHHhcCCeE---------------------ECCCCHHHHHHhcC---CCceEEEEEecCCCCcCCHHH----HHHHH
Confidence 555555544321 22338999998887 578888887655443 22222 99999
Q ss_pred HHHHHhCCEEEEehhhhch-hccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCccccccCCCCH
Q 017633 168 RITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~-~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~ 245 (368)
++|++||+++++||+|... .... ......++.+..+.|+||++ +|+|+||+++++++++.+.. .....+++.++
T Consensus 158 ~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~-~g~~~G~i~~~~~~i~~~~~---~~~~~g~~~~~ 233 (366)
T d2aeua1 158 NTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM-EGPRGGLLAGKKELVDKIYI---EGTKFGLEAQP 233 (366)
T ss_dssp HHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS-SSCSCEEEEEEHHHHHHHHH---HHHTTTCBCCH
T ss_pred HHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccc-cccceeEEEecHHHHHHHHH---HHhcccccCCH
Confidence 9999999999999999543 2211 11122334433334566655 57999999999999988873 22334556788
Q ss_pred HHHHHHHHHHHHH
Q 017633 246 LAMTAGIHTLKRL 258 (368)
Q Consensus 246 ~~~~a~~~~l~~~ 258 (368)
..+.++.++++.+
T Consensus 234 ~~~~a~~~aL~tl 246 (366)
T d2aeua1 234 PLLAGIYRALKNF 246 (366)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888755
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.87 E-value=7.1e-21 Score=171.00 Aligned_cols=316 Identities=14% Similarity=0.109 Sum_probs=198.6
Q ss_pred ccCCCcHHHHHHHHHHHHcC---CCCC-----CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 6 ILFPSYLQVLAALGETMKKG---TSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~---~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
.+|..++.|++++.+.+... ..+. ...+...++++.+++.++ +++++++++|||++++.++..+ ...+++
T Consensus 15 ~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l-~~~~g~ 93 (381)
T d1elua_ 15 GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGL-DWHQGD 93 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHS-CCCTTC
T ss_pred cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhh-hhcCCc
Confidence 34556778999998877542 1111 112445678888999998 7889999999999999988654 235678
Q ss_pred eEEEEcCCCCCCchhhhhh---cCCCccccCCCCCCCCCCCCCCcccccCCCC-HHHHHHHHHcCCCCeEEEEEcccCCC
Q 017633 77 RIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGN 152 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~~~~~~~~~~~~~~~~~~~~ 152 (368)
.|++.+..|+......... .|..+...+...... ..+ .+.+++.++ ++++++++...+++
T Consensus 94 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~-------------~~~~~~~l~~~i~---~~t~~v~i~~~~n~ 157 (381)
T d1elua_ 94 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLN-------------QGDAAAVLANHLG---PKTRLVILSHLLWN 157 (381)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSS-------------SSCHHHHHHTTCC---TTEEEEEEESBCTT
T ss_pred eEEEeccccceeeeccccccccccccccccccccccc-------------cchHHHHHHhhhc---cccccccccccccc
Confidence 8888887776543332222 233222111110000 002 344444444 68899999888888
Q ss_pred CCcccCCHHHHHHHHHHHHHh----CCEEEEehhhhchhccc-CccccccCCCcchh--hhhhhccCCccceeeeehHHH
Q 017633 153 SGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI 225 (368)
Q Consensus 153 ~g~~~~~~~~l~~i~~l~~~~----~~~li~De~~~~~~~g~-~~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~~~~ 225 (368)
+|.+.+ +++|.++|++| ++++++|.+|+ .|. ....+.+ .+|++ ++.|.++++.++|++.++++.
T Consensus 158 tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~---~g~~~~~~~~~--~~D~~~~s~~K~~~~p~G~g~l~~~~~~ 228 (381)
T d1elua_ 158 TGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS---AGSLPLDFSRL--EVDYYAFTGHKWFAGPAGVGGLYIHGDC 228 (381)
T ss_dssp TCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT---BTTBCCCTTTS--CCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred ccccch----hhHHHHHHhhcccccccccccccccc---ccccccccccc--ccccccccccccccccchhhHHHhhHHH
Confidence 999999 99999999995 68999999995 222 2233333 45655 455999877788999888877
Q ss_pred HHHhcCCCCc-------------------cccccCCCCHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHH
Q 017633 226 MEMVAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEPGT----YEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 226 ~~~~~~~~~~-------------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~~~ 282 (368)
.+.+...... ......+.+.....++.++++.+...+. .++..++.+++.++|+++
T Consensus 229 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~- 307 (381)
T d1elua_ 229 LGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL- 307 (381)
T ss_dssp GGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC-
Confidence 7665421100 0011124566666777777776654332 345555566666666553
Q ss_pred HhcCCceE---EeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC-Ccccc--ccCCCHHHHHH
Q 017633 283 KKAGHAIC---GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT--SLAHSSDDIQH 356 (368)
Q Consensus 283 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-~~~~~--~~~~~~~~i~~ 356 (368)
+.... ....++++.|.+.. ....+++.+.|.++||.++..+. ..+|+ ...+|++|+++
T Consensus 308 ---~~~~~~~~~~~~~~~vsf~~~~-------------~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ 371 (381)
T d1elua_ 308 ---PHVHCLATSAPQAGLVSFTVDS-------------PLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINH 371 (381)
T ss_dssp ---TTEEESCSSCCSSSEEEEEECS-------------SSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHH
T ss_pred ---CCeEecCCCCccccEEEEEcCC-------------CCCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHH
Confidence 21111 12344566666532 12246788999999999876543 34554 46679999999
Q ss_pred HHHHHHHH
Q 017633 357 TITAAEKV 364 (368)
Q Consensus 357 ~~~~l~~~ 364 (368)
+++.|+++
T Consensus 372 ll~~l~e~ 379 (381)
T d1elua_ 372 LLARLADF 379 (381)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 99999864
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4.1e-21 Score=173.12 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=136.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCCCC-----------ChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHH--h
Q 017633 7 LFPSYLQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--F 72 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~--~ 72 (368)
.+..+|.|+++|.+++.+...++.+ .+..+++++.++++++ ++++|.+++|+|+++..++..... .
T Consensus 11 ~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~ 90 (391)
T d1p3wa_ 11 TTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQ 90 (391)
T ss_dssp CCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHG
T ss_pred ccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhc
Confidence 4567899999999987654333322 1334567888999988 788999999999999988865432 3
Q ss_pred cCCceEEEEcCCCCCCchhhhhh--cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccC
Q 017633 73 TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 150 (368)
Q Consensus 73 ~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~ 150 (368)
.++++|++.+..|+......... .|..+........ +.. |+++++++++ ++|++++++.++
T Consensus 91 ~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~~-------------d~~~~~~~i~---~~T~lv~is~~~ 153 (391)
T d1p3wa_ 91 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GII-------------DLKELEAAMR---DDTILVSIMHVN 153 (391)
T ss_dssp GGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCC-------------CHHHHHHHCC---TTEEEEECCSBC
T ss_pred CCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC-CeE-------------cHHHHHHhCC---CCcEEEEEECCC
Confidence 56789999888887654333322 2333322221111 111 7899999997 689999999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHh
Q 017633 151 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV 229 (368)
Q Consensus 151 ~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~ 229 (368)
+++|.+.+ +++|+++|++||+++++|.+|+ .|. ......++.+..+.+..|.+| +..+|++.++++.....
T Consensus 154 n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~---~g~~~~d~~~~~~D~~~~s~~k~~g-~~g~g~~~~~~~~~~~~ 225 (391)
T d1p3wa_ 154 NEIGVVQD----IAAIGEMCRARGIIYHVDATQS---VGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKPRVRI 225 (391)
T ss_dssp TTTCCBCC----HHHHHHHHHHHTCEEEEECTTT---BTTBCCCTTTSCCSEEEEESTTTTS-CSSCEEEEECBTTBCCC
T ss_pred CCCeeECC----HHHHHHHhccCCcEEEEeeccc---cCCccccchhccccccccccccccC-CCceEEEEEecchhccc
Confidence 99999999 9999999999999999999995 222 223333333222345568864 34678887776654443
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.86 E-value=6.6e-21 Score=175.60 Aligned_cols=335 Identities=13% Similarity=-0.019 Sum_probs=184.7
Q ss_pred HHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCCch
Q 017633 16 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHAD 90 (368)
Q Consensus 16 ~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~ 90 (368)
+++...+..+..++..++...+|++++++++ +.+.+++++||++|++.+++.++.+. .+..++. +.+|+...
T Consensus 58 ~~~~a~~~~gd~~y~~~~~~~~le~~~a~l~-g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~--~~~h~~t~ 134 (465)
T d1ax4a_ 58 DHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI--SNFHFDTT 134 (465)
T ss_dssp HHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEE--ESSCCHHH
T ss_pred HHHHHHHhhhhhhhccChHHHHHHHHHHHHH-CCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEe--ccchhhhh
Confidence 3333344444444456777889999999988 45789999999999999998887552 2223333 34555433
Q ss_pred hh-hhhcCCCccccCCCCCCCCCCCCCCcccccC-CCCHHHHHHHHHcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHH
Q 017633 91 PF-LVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIR 167 (368)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 167 (368)
.+ ....|........+...... ...... ..|++++++++++. ++.++++++++.++++|...++.+++++|+
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~ 209 (465)
T d1ax4a_ 135 AAHVELNGCKAINIVTEKAFDSE-----TYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209 (465)
T ss_dssp HHHHHHTTCEEEECBCGGGGCTT-----SCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred HHHHHHcCCeeecccccccCCCC-----CCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHH
Confidence 33 33333321110000000000 000000 11899999999863 346788888998888888888899999999
Q ss_pred HHHHHhCCEEEEehhhhch-------hcccCccccccCCCc------chhhhhhhccC-CccceeeeehHH--HHHHhcC
Q 017633 168 RITKENGALLIFDEVMTGF-------RLAYGGAQEYFGVTP------DLTTLGKIIGG-GLPVGAYGGRRD--IMEMVAP 231 (368)
Q Consensus 168 ~l~~~~~~~li~De~~~~~-------~~g~~~~~~~~~~~~------di~s~sK~~~~-G~~iG~v~~~~~--~~~~~~~ 231 (368)
++|++||++||+||+|... +.+..+.....++.+ |++++||+.++ +++.|+++.++. +......
T Consensus 210 ~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~ 289 (465)
T d1ax4a_ 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ 289 (465)
T ss_dssp HHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhc
Confidence 9999999999999999532 112222222222222 45677887774 567778776542 2222211
Q ss_pred CC-CccccccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcc
Q 017633 232 AG-PMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309 (368)
Q Consensus 232 ~~-~~~~~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
.. ......++ .....+..++...+.....+++.++..++.+++++.|++.. .+......+..+.++........
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g----~~~v~~~~~~~~~~~~~~~~~~~ 365 (465)
T d1ax4a_ 290 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCKKLVPQI 365 (465)
T ss_dssp HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEESTTTCTTS
T ss_pred cccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc----CccccCCCcceeeeehhhhcCCC
Confidence 00 01111222 22333333333333333334456666677777777777743 22222222222222222111110
Q ss_pred cchhcccccHHHHHHHHHHHHcCeeecCCCCC-----------------ccc---cccCCCHHHHHHHHHHHHHHHh
Q 017633 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-----------------AGF---TSLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----------------~~~---~~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ..-.......+.+.+.||.+...+.+ .++ ++...|++|+++++++|+++++
T Consensus 366 ~~----~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~ 438 (465)
T d1ax4a_ 366 PG----DQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 438 (465)
T ss_dssp CG----GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred cc----ccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 01122334556667788876432110 122 2345699999999999998865
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6e-19 Score=159.27 Aligned_cols=319 Identities=13% Similarity=0.106 Sum_probs=212.4
Q ss_pred CCCcHHHHHHHHHHHHcCCCC--CCC-------ChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHH--HhcC
Q 017633 8 FPSYLQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLAR--AFTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~--~~~-------~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~--~~~~ 74 (368)
+..++.+++++.+.+.+.... ... .+..++.++.+++.++ .++.+++++|+|+++...+.... ...+
T Consensus 32 ~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~ 111 (405)
T d1jf9a_ 32 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA 111 (405)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCT
T ss_pred cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCC
Confidence 346889999999988763211 111 1346677888999987 35799999999999998875422 3356
Q ss_pred CceEEEEcCCCCCCchhhhhhc---CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
++.|++.+..||.......... |..+...+... ++.. |++.++.+++ ++++++.+..+++
T Consensus 112 g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~-~g~~-------------~~~~~~~~i~---~~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 112 GDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DGTL-------------QLETLPTLFD---EKTRLLAITHVSN 174 (405)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TSCB-------------CGGGHHHHCC---TTEEEEEEESBCT
T ss_pred CCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC-CCcC-------------CHHHHHHhcc---CCcEEEEEecCCC
Confidence 7899999999988776665542 33333222111 1111 6788888776 6899999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhc
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~ 230 (368)
.+|.+.| +++|+++|+++|+++++|.+|+ .|. ....+.++.+--+.+.-|.+| +..+|++.+++++.+.+.
T Consensus 175 ~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~---~g~~~id~~~~~~D~~~~s~hK~~G-p~G~g~l~v~~~~~~~~~ 246 (405)
T d1jf9a_ 175 VLGTENP----LAEMITLAHQHGAKVLVDGAQA---VMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMP 246 (405)
T ss_dssp TTCCBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHHTCSEEEEEGGGTTS-CSSCEEEEECHHHHTTCC
T ss_pred cccccCc----hHHhhhHHHHcCCeeeccccee---ccccccchhhcCCceeecccccccc-CCCceeeeechhhhcccC
Confidence 9999999 9999999999999999999995 332 233444544322345559874 456899999988876654
Q ss_pred CCCCcc-------------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 017633 231 PAGPMY-------------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 291 (368)
Q Consensus 231 ~~~~~~-------------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 291 (368)
...... ..-.-+.+..+.+++.++++.+.+.+ .+.+.+....+.+.+.+.+...+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~L~~~~~~~l~~~~~~~~~ 325 (405)
T d1jf9a_ 247 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQNLMHYALSQLESVPDLTLY 325 (405)
T ss_dssp CSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred cccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhhhhcCCccccc
Confidence 211000 00112457778888888888775533 2455556666666666665555433222
Q ss_pred e--eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Cccc--cccCCCHHHHH
Q 017633 292 G--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGF--TSLAHSSDDIQ 355 (368)
Q Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~--~~~~~~~~~i~ 355 (368)
. ...+++.+.+. .....++...|.++||.++.+.. ..+| +..++|++|++
T Consensus 326 ~~~~r~~ivsf~~~--------------~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid 391 (405)
T d1jf9a_ 326 GPQNRLGVIAFNLG--------------KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD 391 (405)
T ss_dssp SCTTCCSEEEEEET--------------TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHH
T ss_pred CCcCcCcEEEEEcC--------------CCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 1 22345555542 12246778888899999975432 1234 46778999999
Q ss_pred HHHHHHHHHHh
Q 017633 356 HTITAAEKVLR 366 (368)
Q Consensus 356 ~~~~~l~~~l~ 366 (368)
++++.|+++++
T Consensus 392 ~l~~~l~~i~r 402 (405)
T d1jf9a_ 392 RLVTGLQRIHR 402 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.85 E-value=8.7e-21 Score=170.72 Aligned_cols=308 Identities=10% Similarity=-0.032 Sum_probs=183.7
Q ss_pred eeccCCCcHHHHHHH-HHHHHc------CC-C--CCCC---ChhHHHHHHHHHhhC---C----CCCeEEEeCChHHHHH
Q 017633 4 LIILFPSYLQVLAAL-GETMKK------GT-S--FGAP---CLLENVLAEMVISAV---P----SIEMVRFVNSGTEACM 63 (368)
Q Consensus 4 ~~~~g~~~~~v~~a~-~~~~~~------~~-~--~~~~---~~~~~~l~~~l~~~~---~----~~~~v~~~~~gt~a~~ 63 (368)
...+++++|.+.+.. .+..+. +. . |.+. .....+|++.+++++ + +..+|++++|++|+++
T Consensus 58 ~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~ 137 (425)
T d2hoxa1 58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH 137 (425)
T ss_dssp CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHH
T ss_pred eeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHH
Confidence 456788888766663 222222 11 1 1111 124568888888875 2 3457999999999999
Q ss_pred HHHHHHHH------hcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC
Q 017633 64 GVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 137 (368)
Q Consensus 64 ~al~~~~~------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~ 137 (368)
.++..+.. ..++++||+..|.|..+.... ...+.+. +.+.. |.+.+++.++
T Consensus 138 ~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~-~~~~~~~-------------------~~~~~-D~~~~~~~~~-- 194 (425)
T d2hoxa1 138 GLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT-KYFDKKG-------------------YVWAG-NAANYVNVSN-- 194 (425)
T ss_dssp HHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH-HHSCBTT-------------------EEEEE-EGGGGTTCSC--
T ss_pred HHHHHhccccccccCCCCCEEEEecCccccHHHHH-HHcCCCC-------------------CccCC-CHHHHHhhCC--
Confidence 99876521 135688999888776543322 2222111 11111 5666655554
Q ss_pred CCCeEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCCCcchhhhhhhcc-CCc
Q 017633 138 KGEIAA-IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGL 214 (368)
Q Consensus 138 ~~~~~~-~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~~~di~s~sK~~~-~G~ 214 (368)
+++++ ++++|+ |++|.+.. +..+++.+|.||+|.+- ...- ........-+.||||.++ +||
T Consensus 195 -~~~~ii~l~sPn-NPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~~---~~~~~~~Ivl~S~SK~fglaGl 258 (425)
T d2hoxa1 195 -PEQYIEMVTSPN-NPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTPI---KYKADEDILLFTMSKFTGHSGS 258 (425)
T ss_dssp -GGGEEEEEESSC-TTTCCCCC-----------CSSTTCEEEEECTTCSTTTSCC---CSCBCCSEEEEEHHHHTSCGGG
T ss_pred -CCceEEEEECCC-CCCcchhh-----------hhhhCCEEEEeccccCccccch---hhhcCCeEEEEeCHHhccCcch
Confidence 34555 455554 44555432 12368999999999543 1111 112223334569999999 999
Q ss_pred cceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHHHHHHh
Q 017633 215 PVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---------PGTYEYLNKITGELTQGIIDAGKK 284 (368)
Q Consensus 215 ~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~ 284 (368)
|+||+++ ++.+++.+. .....++++++.+++.++.++++.... .++.+..++..+..++++.+.+..
T Consensus 259 RiGw~i~~~~~i~~~~~---~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 335 (425)
T d2hoxa1 259 RFGWALIKDESVYNNLL---NYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (425)
T ss_dssp CCEEEEECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heeeEEeCCHHHHHHHH---HhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999755 566767665 234456778899999998888864311 234444444444444445554444
Q ss_pred cCCc---------------eEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC-----CCccc
Q 017633 285 AGHA---------------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGF 344 (368)
Q Consensus 285 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~~~~ 344 (368)
.+.. ......+.+.|+.+.. .......+.|.++||.+.||. ..++|
T Consensus 336 ~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~--------------~~~~~~~~lL~e~gI~v~pGs~FG~~~~yvR 401 (425)
T d2hoxa1 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVR 401 (425)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEE
T ss_pred cCCceeeccCCccceeeeeeccCCCcceeeeeCCC--------------ChHHHHHHHHHhCCEEEEechhcCCCCCEEE
Confidence 3321 1222333455555421 111334566788999999863 23578
Q ss_pred cccCCCHHHHHHHHHHHHHHHhh
Q 017633 345 TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 345 ~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+++..+++++++++++|++++++
T Consensus 402 isl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 402 LSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EECSSCHHHHHHHHHHHHHHHTC
T ss_pred EEecCCHHHHHHHHHHHHHHHhc
Confidence 88889999999999999999863
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.8e-20 Score=165.38 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=187.0
Q ss_pred ChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhh-cCCCccccCCCCC
Q 017633 32 CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 108 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 108 (368)
.+...+.++.++++++ +...++++.|||++++.++... ..+++++++...++++........ .+........+..
T Consensus 51 ~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1h0ca_ 51 YQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV--LEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPG 128 (388)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--CCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh--hccCCceeeecccceeeeeccccccccccccccccCCc
Confidence 3567888999999987 3457999999999999999765 356778888776666543332222 2222211111211
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
... |.+++++.+... +++++.+...++.+|.+.| +++|.++|++||+++++|.+++ .
T Consensus 129 ~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs---~ 185 (388)
T d1h0ca_ 129 GHY--------------TLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS---L 185 (388)
T ss_dssp CCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT---T
T ss_pred ccc--------------chHHHHHHhccC--CcceEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc---c
Confidence 121 677777777653 5678888888888999999 9999999999999999999996 2
Q ss_pred cc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCCCc--------------------cccccCCCCH
Q 017633 189 AY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNP 245 (368)
Q Consensus 189 g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~~~--------------------~~~~t~~~~~ 245 (368)
|. ....+.++. |++++| |++++...+|+++.++...+.+...... ......+++.
T Consensus 186 g~~~~d~~~~~~--D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 263 (388)
T d1h0ca_ 186 GGTPLYMDRQGI--DILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPV 263 (388)
T ss_dssp TTSCCCTTTTTC--SEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCH
T ss_pred cccccccccccc--ceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccH
Confidence 22 233444444 655544 8887655778888888777665432110 0011224566
Q ss_pred HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHH
Q 017633 246 LAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 322 (368)
Q Consensus 246 ~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (368)
....+..++++.+.+.+ ..++..+..+++++.+.......-..........++.+.+ |+..+..
T Consensus 264 ~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~-------------p~~~~~~ 330 (388)
T d1h0ca_ 264 ISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAV-------------PAGYDWR 330 (388)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEEC-------------CTTCCHH
T ss_pred HHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEEC-------------CCCCCHH
Confidence 67777777887765533 3334444455555555443211101101111223445544 2334467
Q ss_pred HHHHHHHHc-CeeecCCCC----Cccccc---cCCCHHHHHHHHHHHHHHHhhC
Q 017633 323 RFYRGMLEE-GVYFAPSQF----EAGFTS---LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 323 ~~~~~l~~~-Gi~~~~~~~----~~~~~~---~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
++.+.|+++ ||.++.|.. ..+|++ .+.+.+|+++++++|+++++++
T Consensus 331 ~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l 384 (388)
T d1h0ca_ 331 DIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC 384 (388)
T ss_dssp HHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 888888765 999887632 234553 5678999999999999999864
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=3.3e-20 Score=162.48 Aligned_cols=319 Identities=11% Similarity=-0.000 Sum_probs=169.4
Q ss_pred eccCCCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcC
Q 017633 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 83 (368)
Q Consensus 5 ~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~ 83 (368)
|+.| .+|+|++|+.++.......+.+++..+++++.++++++ +.+++++|+|||+|+..++... ..+++.++....
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~--~~~~~~~~~~~~ 84 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LRPWEAVIATQL 84 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CCTTEEEEEETT
T ss_pred CCCC-CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHH--hhhccccccccc
Confidence 4445 68999999998765532223467888899999999998 6789999999999999998766 345666666655
Q ss_pred CCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCH
Q 017633 84 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKP 160 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~ 160 (368)
.++...................+.... .+.+...+.... ....+..+++...++++|.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (340)
T d1svva_ 85 GHISTHETGAIEATGHKVVTAPCPDGK--------------LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 150 (340)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCTTSC--------------CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred cceeeeecccccccceeeeeccccccc--------------ccchhHHHHhhhhhcccCCcceeeeecccccccccccHH
Confidence 544432222222222111000000110 023333333332 112344455555555566555544
Q ss_pred HHHHHHHHHHHHhCCEEEEehhhhch-hccc--CccccccCCCcchhhhhhhccCC-ccceeeeehHHHHHHhcCCCCcc
Q 017633 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMY 236 (368)
Q Consensus 161 ~~l~~i~~l~~~~~~~li~De~~~~~-~~g~--~~~~~~~~~~~di~s~sK~~~~G-~~iG~v~~~~~~~~~~~~~~~~~ 236 (368)
+ +..+.+.|+++|.++++|+++.+. .... ............+.++++..+.+ .+.++.............. ...
T Consensus 151 ~-~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (340)
T d1svva_ 151 E-LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL-IKQ 228 (340)
T ss_dssp H-HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH-HHH
T ss_pred H-hhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh-ccc
Confidence 4 899999999999999999999654 2111 11111111111223344444422 2333333333222111100 011
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 316 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (368)
..++........++ ++..+. ........+.....+.++...+...+.....+..++++++.+.
T Consensus 229 ~~~~~~~~~~~~aa---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~------------- 291 (340)
T d1svva_ 229 RGALMAKGWLLGIQ---FEVLMK-DNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE------------- 291 (340)
T ss_dssp TTCCCTTTHHHHHH---HHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE-------------
T ss_pred ccCccchhhHHHHH---HHHHhh-hhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCC-------------
Confidence 11222222233322 333332 3333334444444555555555555554333444555555542
Q ss_pred ccHHHHHHHHHHHHc----CeeecCCCCCcccc--ccCCCHHHHHHHHHHHHHH
Q 017633 317 ETTKFARFYRGMLEE----GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 317 ~~~~~~~~~~~l~~~----Gi~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~~ 364 (368)
.+....|.++ |+...+.+...+|+ +..+|++||++++++|+++
T Consensus 292 -----~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 292 -----NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -----HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 2344555555 55555555555665 6788999999999999873
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.83 E-value=9.3e-18 Score=151.51 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=207.6
Q ss_pred CCCcHHHHHHHHHHHHcCCCC--CCC-------ChhHHHHHHHHHhhCC-C-CCeEEEeCChHHHHHHHHHHH--HHhcC
Q 017633 8 FPSYLQVLAALGETMKKGTSF--GAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA--RAFTG 74 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~--~~~-------~~~~~~l~~~l~~~~~-~-~~~v~~~~~gt~a~~~al~~~--~~~~~ 74 (368)
|..++.|++++.+.+.+.... ... .+..++.++.++++++ + .+.+++++++++++..++... ...++
T Consensus 32 ~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~ 111 (408)
T d1t3ia_ 32 SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKA 111 (408)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCC
Confidence 446788999999988763211 111 1355677888999987 3 578999999999998877442 23356
Q ss_pred CceEEEEcCCCCCCchhhhhhc---CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~ 151 (368)
+++|++.+..++.......... |..+.....+..... +.+.++++++ ++++++.+...++
T Consensus 112 g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~--------------~~~~l~~~~~---~~t~lv~i~~~~~ 174 (408)
T d1t3ia_ 112 GDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESF--------------DLEHFKTLLS---EKTKLVTVVHISN 174 (408)
T ss_dssp TCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSB--------------CHHHHHHHCC---TTEEEEEEESBCT
T ss_pred CCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccc--------------cHHHhhhccC---CCceEEEEecccc
Confidence 7888888887777655544332 333322221111111 6888888876 6899999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHH
Q 017633 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 152 ~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~ 228 (368)
++|...| +++|.++|+++|+++++|-+|+ .|. ...++.++. |++++| |.+ |+..+|+++.+++....
T Consensus 175 ~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~---~g~~~id~~~~~~--D~~~~s~hK~~-gp~G~g~l~v~~~~~~~ 244 (408)
T d1t3ia_ 175 TLGCVNP----AEEIAQLAHQAGAKVLVDACQS---APHYPLDVQLIDC--DWLVASGHKMC-APTGIGFLYGKEEILEA 244 (408)
T ss_dssp TTCBBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHHTC--SEEEEEGGGTT-SCTTCEEEEECHHHHHH
T ss_pred cccccCc----HHHHhhhhhccCceeeecccee---cccccccccccCC--ceEEecccccc-CCCCccccccchhhhhc
Confidence 9999999 9999999999999999999995 332 233344444 665544 975 44578999998887765
Q ss_pred hcCCCCc-c-----------------ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 017633 229 VAPAGPM-Y-----------------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 290 (368)
Q Consensus 229 ~~~~~~~-~-----------------~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 290 (368)
....... . ..-.-+.+..+.+++.++++.+.+-+ .++++++...+.+.+.+.+...+....
T Consensus 245 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~~~~~~~~~~ 323 (408)
T d1t3ia_ 245 MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLG-MENIHNYEVELTHYLWQGLGQIPQLRL 323 (408)
T ss_dssp SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHhHHhhhhccCccccc
Confidence 5421000 0 00122457777777778888775533 244555555555555555444443222
Q ss_pred E------eeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------------Cccc--cccCCC
Q 017633 291 G------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGF--TSLAHS 350 (368)
Q Consensus 291 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------------~~~~--~~~~~~ 350 (368)
. ....+++.+.+. ..+..++...|.++||.++.|.. ..+| +..++|
T Consensus 324 ~~~~~~~~~~~~iv~f~~~--------------~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt 389 (408)
T d1t3ia_ 324 YGPNPKHGDRAALASFNVA--------------GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 389 (408)
T ss_dssp ESCCGGGSCBCSEEEEEET--------------TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred cCCCccccCcceEEEEEeC--------------CCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCC
Confidence 1 122345555442 22356788889899999986532 1234 467789
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017633 351 SDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 351 ~~~i~~~~~~l~~~l~~ 367 (368)
++|++++++.|+++++.
T Consensus 390 ~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 390 KEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999864
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=1.4e-18 Score=154.65 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=193.9
Q ss_pred ccCCCcHHHHHHHHHHHHcC-CCCC--CCChhHHHHHHHHHhhCC-CCCe--EEEeCChHHHHHHHHHHHHHhcCCceEE
Q 017633 6 ILFPSYLQVLAALGETMKKG-TSFG--APCLLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERII 79 (368)
Q Consensus 6 ~~g~~~~~v~~a~~~~~~~~-~~~~--~~~~~~~~l~~~l~~~~~-~~~~--v~~~~~gt~a~~~al~~~~~~~~~~~vi 79 (368)
.||.+|-.+-+++.+++... .++. ...+..++.++.++++++ +.+. ++++.|||++++.++... ..+++.++
T Consensus 3 l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l--~~~~~~~~ 80 (361)
T d1m32a_ 3 LLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA--LGPQDKVL 80 (361)
T ss_dssp ECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS--CCTTCCEE
T ss_pred cccCCCCCCCHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh--hhhccccc
Confidence 46665544444444443331 1121 134667899999999987 4443 888899999999998655 23455566
Q ss_pred EEcCCCCCCch-hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccC
Q 017633 80 KFEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158 (368)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (368)
+....+++... ......+........+..... +.+..+..... .++++.+.+..+.+.+|...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~ 145 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARP--------------DVQAIDAILNA-DPTISHIAMVHSETTTGMLNP 145 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCC--------------CHHHHHHHHHH-CTTCCEEEEESEETTTTEECC
T ss_pred eeeehhhhhhHHHHhhhhhcccccccccccCCc--------------cchhhHHHHHh-ccCccceEEEeeecccccchh
Confidence 65555444322 222222222211111111110 22222222222 257888888889888999999
Q ss_pred CHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 159 KPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 159 ~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
+++|.++|++||+++++|.+|+ .|. .+..+.+ ..|+.++| |+++|...+|++.++++..+........
T Consensus 146 ----i~~i~~~~~~~g~~~~vDa~qs---~G~~~~d~~~~--~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~ 216 (361)
T d1m32a_ 146 ----IDEVGALAHRYGKTYIVDAMSS---FGGIPMDIAAL--HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRS 216 (361)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTTT---TTTSCCCTTTT--TCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSC
T ss_pred ----hhhhhhhhcccceeeEeecccc---cCccccccccc--ccceEEeeecccccCCCCceEEEechhhhhhhcccccc
Confidence 9999999999999999999996 232 2333334 45777665 8887656789999888877665532110
Q ss_pred ---------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe---eccce
Q 017633 236 ---------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGM 297 (368)
Q Consensus 236 ---------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~ 297 (368)
......+++.....+...++.....++..+...++.+...+.+.+.....+...... ....+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v 296 (361)
T d1m32a_ 217 LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPII 296 (361)
T ss_dssp STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSE
T ss_pred ccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcE
Confidence 011233567777777777777665555555555555555556655555444322111 11223
Q ss_pred EEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC---Cccccc--cCCCHHHHHHHHHHHHHHH
Q 017633 298 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~---~~~~~~--~~~~~~~i~~~~~~l~~~l 365 (368)
+.+.+... ...+..++.+.|.++||.+.+++. ..+|++ -+++++|+++++++|+++|
T Consensus 297 ~~~~~p~~-----------~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 297 TAFYSPED-----------PQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp EEEECCCC-----------TTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCC-----------CCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 34433110 112357899999999999987632 234554 2579999999999999886
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.7e-18 Score=159.35 Aligned_cols=323 Identities=12% Similarity=-0.028 Sum_probs=184.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc------CCceEEEEcCCCCCCchhhhhhcCCCccc
Q 017633 29 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVAT 102 (368)
Q Consensus 29 ~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 102 (368)
+..++...+|+++++++++ .+.+++++||++|+..+++.+.... +....++....||+.+.......|.....
T Consensus 70 Y~~~~~~~~le~~~a~l~G-~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~ 148 (467)
T d2v1pa1 70 FSGSRSYYALAESVKNIFG-YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRN 148 (467)
T ss_dssp SSSCHHHHHHHHHHHHHTC-CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEE
T ss_pred hcCCchHHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeee
Confidence 3346778899999999995 4678999999999999998776541 23345566667777666667766654322
Q ss_pred cCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 103 LGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
...+..... ..........|++++++.++. +++.++++++++.++++|....+.+++++|+++|++||++||+|+
T Consensus 149 ~~~~~~~~~----~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~ 224 (467)
T d2v1pa1 149 VYIKEAFDT----GVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS 224 (467)
T ss_dssp CBCTTTTCT----TSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccccccc----ccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 111111100 001111122389999999986 345688999999999888888888889999999999999999999
Q ss_pred hhhc-h---hcccCcccccc---------CCCcchhhhhhhccC-CccceeeeehHH-HHHHh---cCCC-CccccccCC
Q 017633 182 VMTG-F---RLAYGGAQEYF---------GVTPDLTTLGKIIGG-GLPVGAYGGRRD-IMEMV---APAG-PMYQAGTLS 242 (368)
Q Consensus 182 ~~~~-~---~~g~~~~~~~~---------~~~~di~s~sK~~~~-G~~iG~v~~~~~-~~~~~---~~~~-~~~~~~t~~ 242 (368)
++.. . ..+....+... ....|++|+|+..+. +...|+++.+++ +.... .... ......++.
T Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (467)
T d2v1pa1 225 ARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 (467)
T ss_dssp TTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred hhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchh
Confidence 9842 1 11111111111 123456667655553 334455555443 22221 1100 011122222
Q ss_pred CC-HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHH
Q 017633 243 GN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 321 (368)
Q Consensus 243 ~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
.. ...+.+....+.....+++.++..++.++++++|.+.. .. .....+....++.....+... ......
T Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~-v~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 374 (467)
T d2v1pa1 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG----VV-CQQAGGHAAFVDAGKLLPHIP-----ADQFPA 374 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT----CC-EEEECSSCEEEEHHHHSTTSC-----GGGCHH
T ss_pred hhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC----Cc-ccCCCccceeecchhhcCCcc-----hhhhhh
Confidence 33 33344443444444345577778888888888887742 22 122223322332221111110 011112
Q ss_pred HH-HHHHHHHcCeeecCCC-----------------CCcccc---ccCCCHHHHHHHHHHHHHHHh
Q 017633 322 AR-FYRGMLEEGVYFAPSQ-----------------FEAGFT---SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 322 ~~-~~~~l~~~Gi~~~~~~-----------------~~~~~~---~~~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ..+.+.+.||.....+ ...+++ ....|++||++++++|+++.+
T Consensus 375 ~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 375 QALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp HHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 33 3444566787553221 011232 345699999999999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=6.7e-18 Score=151.03 Aligned_cols=310 Identities=14% Similarity=0.040 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchh
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 91 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~ 91 (368)
++-++++.+.++.+... .-+...++++.++++++. +.+++++|||+|+.+++... ...++|.||+.+-++.....+
T Consensus 12 ~~~~~~~~~~~~~~~~~--~G~~v~~~E~~la~~~g~-~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~~~a 87 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWIT--TGPKNQELEAAFCRLTGN-QYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTLNM 87 (376)
T ss_dssp HHHHHHHHHHHHHTCCS--SSHHHHHHHHHHHHHHCC-SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc--CCHHHHHHHHHHHHHHCc-CeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEecccccccccc
Confidence 45567787877764222 235668899999999864 56778889999999999764 346788999988877776555
Q ss_pred hhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 017633 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171 (368)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~ 171 (368)
....+..++..+-.+....+ |+++|+++++ ++++++++.+. .|...+ +++|.++|+
T Consensus 88 i~~~g~~pv~~d~~~~~~~~--------------d~~~l~~~i~---~~tkaIi~~h~---~G~~~~----~~~i~~i~~ 143 (376)
T d1mdoa_ 88 IVLLGANPVMVDVDRDTLMV--------------TPEHIEAAIT---PQTKAIIPVHY---AGAPAD----LDAIYALGE 143 (376)
T ss_dssp HHHTTCEEEEECBCTTTCCB--------------CHHHHHHHCC---TTEEEECCBCG---GGCCCC----HHHHHHHHH
T ss_pred hhccccceeeecccccccCC--------------CHHHHHHhcC---CCCeEEEEeCC---CCCccc----hhHHHHHHH
Confidence 55555544433322222222 8999999998 57888887654 455566 999999999
Q ss_pred HhCCEEEEehhhhchhcccCccccccCC-Ccchhhh--hhhccCCccceeeee-hHHHHHHhc---CCCC----------
Q 017633 172 ENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVA---PAGP---------- 234 (368)
Q Consensus 172 ~~~~~li~De~~~~~~~g~~~~~~~~~~-~~di~s~--sK~~~~G~~iG~v~~-~~~~~~~~~---~~~~---------- 234 (368)
+||++||+|.+|+- |..+.-...+. ...+.|| +|.+++| ..|.++. ++++.+.++ ..+.
T Consensus 144 ~~~i~vIeD~a~a~---g~~~~~~~~g~~g~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~ 219 (376)
T d1mdoa_ 144 RYGIPVIEDAAHAT---GTSYKGRHIGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSG 219 (376)
T ss_dssp HHTCCBCEECTTCT---TCEETTEETTSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC-------
T ss_pred hcCceEEeccchhc---cCeeCCeecccccCccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCcccccccccc
Confidence 99999999999952 21111111111 1134454 3888754 3466655 455555442 1111
Q ss_pred --------ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHh-cCCc-eEEeeccceEEEEeec
Q 017633 235 --------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHA-ICGGYISGMFGFFFTE 304 (368)
Q Consensus 235 --------~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 304 (368)
...+..+..+.+.++.+...++.+ +++.++.+++.+++.+.|.+.... .... .........+.+.+..
T Consensus 220 ~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (376)
T d1mdoa_ 220 GRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE 297 (376)
T ss_dssp ----CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH
T ss_pred cccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccc
Confidence 001234456667777776666644 445666667777777776653211 0100 0111111111221110
Q ss_pred CCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------------------------ccc--ccCCCHHHHHHH
Q 017633 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------------------------GFT--SLAHSSDDIQHT 357 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------------------------~~~--~~~~~~~~i~~~ 357 (368)
. .......++.+.|.++||.++....+. +++ ...++++|++++
T Consensus 298 ~----------~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I 367 (376)
T d1mdoa_ 298 A----------RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRV 367 (376)
T ss_dssp H----------HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHH
T ss_pred c----------cchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHH
Confidence 0 000113578999999999887542211 122 245599999999
Q ss_pred HHHHHHHH
Q 017633 358 ITAAEKVL 365 (368)
Q Consensus 358 ~~~l~~~l 365 (368)
++.|++++
T Consensus 368 ~~~i~~i~ 375 (376)
T d1mdoa_ 368 ITALHQIA 375 (376)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.8e-17 Score=148.13 Aligned_cols=320 Identities=17% Similarity=0.152 Sum_probs=181.1
Q ss_pred CCCcHHHHHHHHHHHHcCCCC--CC------CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHH-HhcCCce
Q 017633 8 FPSYLQVLAALGETMKKGTSF--GA------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR-AFTGRER 77 (368)
Q Consensus 8 g~~~~~v~~a~~~~~~~~~~~--~~------~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~-~~~~~~~ 77 (368)
+..++.|++++.+++.+.... +. ..+..++.+++++++++ +++++++++|+|+++..++.... ....++.
T Consensus 11 ~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~ 90 (376)
T d1eg5a_ 11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKR 90 (376)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCC
T ss_pred ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCc
Confidence 456788999999988763211 11 11234466788999998 78899999999999999885432 2334445
Q ss_pred EEEEcCCCCCCchhhhhh---cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 78 IIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 78 vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+++....+|......... .|..+...++.. .+.. |+++++++++ ++++++++..+++.+|
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~-~~~i-------------d~~~l~~~i~---~~t~lv~is~v~~~tG 153 (376)
T d1eg5a_ 91 TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGVV-------------KLEELEKLVD---EDTFLVSIMAANNEVG 153 (376)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSCB-------------CHHHHHHHCC---TTEEEEEEESBCTTTC
T ss_pred ccccccccchhhHHHHHHHHhcCCEEEEEcCCC-CCeE-------------CHHHHHHhcC---CCceEEEEECCccccc
Confidence 555555666554443332 233333322211 1111 7999999997 5899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHh--CCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCccceeeeehHHH-HHHhc
Q 017633 155 FIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDI-MEMVA 230 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~--~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~-~~~~~ 230 (368)
...+ ++++.++++.+ ++++++|.+|. .|. ......++.+.-+.+..|+++ +.+.|++..+++. .+...
T Consensus 154 ~~~~----~~~i~~~~~~~~~~~~~~vD~~q~---~g~~~~d~~~~~~D~~~~s~~K~~g-p~G~~~l~~~~~~~~~p~~ 225 (376)
T d1eg5a_ 154 TIQP----VEDVTRIVKKKNKETLVHVDAVQT---IGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKGVPIRPLI 225 (376)
T ss_dssp BBCC----HHHHHHHHHHHCTTCEEEEECTTT---TTTSCCCCTTTCCSEEEEEGGGGTS-CTTCEEEEECTTSCCCCSB
T ss_pred eeee----ehhhhhhhhhcccCceeEEEeeec---cccccccccccCccceecccceeec-CCCceeEEeccCcccCCcc
Confidence 9999 99999998776 89999999995 222 223333443323446779976 2334554444331 11111
Q ss_pred -CCCCccccccCCCCHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCC
Q 017633 231 -PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307 (368)
Q Consensus 231 -~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (368)
..+..........+......+.......... ..........+++.+.|.......... ..........+.+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~----- 299 (376)
T d1eg5a_ 226 HGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP-LEISLPNTLSVSF----- 299 (376)
T ss_dssp CSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC-TTSBCTTEEEEEC-----
T ss_pred cCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccccccccc-ccccccceeeecc-----
Confidence 1111111122233445444444444333211 122233333333434333321111000 0011111222222
Q ss_pred cccchhcccccHHHHHHHHHHHHcCeeecCCCC-----------------------Cccc--cccCCCHHHHHHHHHHHH
Q 017633 308 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGF--TSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~-----------------------~~~~--~~~~~~~~~i~~~~~~l~ 362 (368)
....+..+...|.++||.++.+.. +.+| +..++|++|++++++.|+
T Consensus 300 ---------~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~ 370 (376)
T d1eg5a_ 300 ---------PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIE 370 (376)
T ss_dssp ---------TTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 122357788888899999876521 0134 356679999999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
++++-
T Consensus 371 ~iv~~ 375 (376)
T d1eg5a_ 371 EILSF 375 (376)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99864
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.78 E-value=5.3e-18 Score=151.68 Aligned_cols=316 Identities=11% Similarity=0.037 Sum_probs=189.5
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 017633 9 PSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 88 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 88 (368)
.-..+-.+++.+.++.+..+...-+...+++++++++++. ..++.++|||.|+.+|++.+ ..+++|+||+.+-+|...
T Consensus 10 ~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~-~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a~ 87 (384)
T d1b9ha_ 10 QYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGA-AHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISS 87 (384)
T ss_dssp CCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHH
T ss_pred CCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHHCc-CeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEeccccccc
Confidence 3345567788888887543233345678899999999854 46788889999999999865 346788999888777665
Q ss_pred chhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 017633 89 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 168 (368)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~ 168 (368)
..+....+..++..+-.+....+ |++.+++.++ ++++++++.+.. |...+ ++++.+
T Consensus 88 ~~ai~~~g~~p~~~d~~~~~~~~--------------d~~~~~~~i~---~~tk~i~~~~~~---g~~~d----~~~i~~ 143 (384)
T d1b9ha_ 88 SQAAQRLGAVTVPVDVDAATYNL--------------DPEAVAAAVT---PRTKVIMPVHMA---GLMAD----MDALAK 143 (384)
T ss_dssp HHHHHHTTCEEEEECBCTTTCCB--------------CHHHHHHHCC---TTEEEECCBCGG---GCCCC----HHHHHH
T ss_pred ccccccccccccccccccccccc--------------chhhhccccc---cccccccccccc---ccccc----cccchh
Confidence 44444444443332222222222 8999999887 578888765555 44455 999999
Q ss_pred HHHHhCCEEEEehhhhchhcccCccccccCCCcc--hhhh--hhhccCCccceeeee-hHHHHHHhcC---CC--C----
Q 017633 169 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD--LTTL--GKIIGGGLPVGAYGG-RRDIMEMVAP---AG--P---- 234 (368)
Q Consensus 169 l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~d--i~s~--sK~~~~G~~iG~v~~-~~~~~~~~~~---~~--~---- 234 (368)
+|++++++||+|.+|+-. ..+.-...|..-| +.|| +|.+++| ..|+++. ++++.+.++. .+ .
T Consensus 144 ~~~~~~i~lieD~a~a~g---a~~~g~~~g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~ 219 (384)
T d1b9ha_ 144 ISADTGVPLLQDAAHAHG---ARWQGKRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDD 219 (384)
T ss_dssp HHHHHTCCBCEECTTCTT---CEETTEEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTC
T ss_pred hhhhhhhhhhhhhceecc---cccCCEecCcccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCcccc
Confidence 999999999999999522 1111112222223 3444 5888755 3566655 4555444321 10 0
Q ss_pred -----ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCC--ce-EEeeccceEEEEeecCC
Q 017633 235 -----MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH--AI-CGGYISGMFGFFFTEGP 306 (368)
Q Consensus 235 -----~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 306 (368)
...+..+..+.+.++.++..++.+ +++.++.+++.+++.+.|++.-.-... .. .......+..+.+..
T Consensus 220 ~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-- 295 (384)
T d1b9ha_ 220 RRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG-- 295 (384)
T ss_dssp SSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT--
T ss_pred ccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecc--
Confidence 112345567788877777776644 344555666666666666543110000 00 011111122222210
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc---------------------------------cccc--cCCC-
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------------------------------GFTS--LAHS- 350 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~---------------------------------~~~~--~~~~- 350 (368)
.......++.+.|.++||.++....+. ++++ ..++
T Consensus 296 ---------~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~ 366 (384)
T d1b9ha_ 296 ---------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAG 366 (384)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSC
T ss_pred ---------cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCC
Confidence 122335679999999999876543211 1222 3445
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017633 351 SDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 351 ~~~i~~~~~~l~~~l~~ 367 (368)
++|+++.++.|++++.+
T Consensus 367 e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 367 EPELHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67999999999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.77 E-value=1.5e-17 Score=150.13 Aligned_cols=320 Identities=12% Similarity=0.039 Sum_probs=196.9
Q ss_pred cCCCcHHHHHHHHHHHHcCCCCC--------CCChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHH----Hhc
Q 017633 7 LFPSYLQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR----AFT 73 (368)
Q Consensus 7 ~g~~~~~v~~a~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~----~~~ 73 (368)
.|..+..+.+++.+++.+....+ ...+..+++++.+++.++ +++++++++++|+++..++.... ...
T Consensus 36 ~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~ 115 (404)
T d1qz9a_ 36 LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRS 115 (404)
T ss_dssp SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccC
Confidence 45567889999999886632211 112456789999999998 78899999999999988764321 224
Q ss_pred CCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCC
Q 017633 74 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153 (368)
Q Consensus 74 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~ 153 (368)
.++.+++.+..++.......... ........ ...+ ..+++.++++++ ++++++.+..+++.+
T Consensus 116 ~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-------------~~~~~~~~~~i~---~~T~lV~i~~v~~~t 177 (404)
T d1qz9a_ 116 PERRVIVTETSNFPTDLYIAEGL-ADMLQQGY-TLRL-------------VDSPEELPQAID---QDTAVVMLTHVNYKT 177 (404)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHH-HHHHCSSC-EEEE-------------ESSGGGHHHHCS---TTEEEEEEESBCTTT
T ss_pred CCcEEEEeccccchHHHHHHhhh-heeeeece-eccc-------------cccchhHHHhcC---CCceEEEEecccccc
Confidence 56677777766654433222211 11100000 0001 115778888887 689999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhhhhhhccCCc-cceeeeehHHHHHHhcC
Q 017633 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAP 231 (368)
Q Consensus 154 g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s~sK~~~~G~-~iG~v~~~~~~~~~~~~ 231 (368)
|.+.| +++|+++|+++|+++++|-+|+ .|. ....+.++.+..+++..|.+.+|. .+|++..++...+.+..
T Consensus 178 G~~~p----v~~i~~~~~~~~~~~~vD~~q~---~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~ 250 (404)
T d1qz9a_ 178 GYMHD----MQALTALSHECGALAIWDLAHS---AGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQ 250 (404)
T ss_dssp CBBCC----HHHHHHHHHHHTCEEEEECTTT---TTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCC
T ss_pred cceec----HHHHhccccccccceeEEeecc---ccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCc
Confidence 99999 9999999999999999999995 222 233444444333445558886543 46777777766554432
Q ss_pred CCCc--------------------cccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017633 232 AGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHA 288 (368)
Q Consensus 232 ~~~~--------------------~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~ 288 (368)
.... ......+.+..+......+++.+.... ..++.....+.+...+.++....++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (404)
T d1qz9a_ 251 PLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELT 330 (404)
T ss_dssp SCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred cccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEE
Confidence 1110 011122345666666667777665432 23333344444444444333322221
Q ss_pred e----EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccccc---cCCCHHHHHHHHHHH
Q 017633 289 I----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS---LAHSSDDIQHTITAA 361 (368)
Q Consensus 289 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~---~~~~~~~i~~~~~~l 361 (368)
. .....++++.+.. .++.++.+.|.++||.+.......+|++ +++|++|++++++.|
T Consensus 331 i~~p~~~~~r~~~vsf~~----------------~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L 394 (404)
T d1qz9a_ 331 LVTPREHAKRGSHVSFEH----------------PEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQIL 394 (404)
T ss_dssp ECSCSSGGGBCSEEEEEC----------------TTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHH
T ss_pred EECCCCccceeeEEEEec----------------CCHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHH
Confidence 1 1112234444433 1257789999999998754333345543 468999999999999
Q ss_pred HHHHhh
Q 017633 362 EKVLRQ 367 (368)
Q Consensus 362 ~~~l~~ 367 (368)
++++++
T Consensus 395 ~~vl~~ 400 (404)
T d1qz9a_ 395 GEILDR 400 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.77 E-value=4.7e-18 Score=154.94 Aligned_cols=291 Identities=11% Similarity=0.024 Sum_probs=166.5
Q ss_pred HHHHHHhhCCCCCeEEEeCChHH-HHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCC-CCCCCCCCCC
Q 017633 38 LAEMVISAVPSIEMVRFVNSGTE-ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGA 115 (368)
Q Consensus 38 l~~~l~~~~~~~~~v~~~~~gt~-a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 115 (368)
+...+++.++......++.+|+. ++..++.+.+...+++.|++ +..-|.+...++...|.+...... +....
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~-s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~----- 191 (434)
T d2z67a1 118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIY-PYASHKSPIKAVSFVGMNMRLVETVLDGDR----- 191 (434)
T ss_dssp HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHTTCEEEEECCEEETTE-----
T ss_pred HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEE-eccCCHHHHHHHHHhCCcceEEEeecCCCc-----
Confidence 33445666664445555555554 44455555544445555555 556777777766666554322111 11100
Q ss_pred CCcccccCCCCHHHHHHHHHcC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch--hcccC
Q 017633 116 TYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYG 191 (368)
Q Consensus 116 ~~~~~~~~~~d~~~le~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~--~~g~~ 191 (368)
.. .|+++|+++++++ ..++.++++...++.+|...+ +++|+++|++||+++++|++|..+ ....
T Consensus 192 ----~~---~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~- 259 (434)
T d2z67a1 192 ----VY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE- 259 (434)
T ss_dssp ----EE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH-
T ss_pred ----cC---CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc-
Confidence 00 1899999999863 236777777777677788777 999999999999999999999543 1111
Q ss_pred ccccccCCCcchh--hhhhhccCCccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHH
Q 017633 192 GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 268 (368)
Q Consensus 192 ~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 268 (368)
..........|++ +..|.++++...|++.. ++...+.+... ..+.+...+...+.+++..+....-.++.++..
T Consensus 260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~ 336 (434)
T d2z67a1 260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS---YPGRASATPVVNTLVSLLSMGSKNYLELVKNQK 336 (434)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTT---SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhh---cccccccchHHHHHHHHHHHHHhcchhHHHHHH
Confidence 1111122344655 45699987667777755 56667766632 122222222233333222222111134567778
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---------
Q 017633 269 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 339 (368)
Q Consensus 269 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------- 339 (368)
++.++++++|+++....+.......... .+.+.. ..+..++...|.++||......
T Consensus 337 ~~a~~l~~~L~~l~~~~g~~ll~~~~~~--~~~~~~-------------~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~ 401 (434)
T d2z67a1 337 NSKKLLDELLNDLSKKTGGKFLDVESPI--ASCISV-------------NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNC 401 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCBCCCCCSS--EEEEEC-------------SSCHHHHHHHHHHTTEESCEEECTTCHHHHT
T ss_pred HHHHHHHHHHHHhhhhcCceecCCCCCc--eeeeec-------------CCCHHHHHHHHHHcCCeeeehhhhccccCee
Confidence 8888888888887555443222111111 222221 1124678888999998543210
Q ss_pred ------CCccc--cccCCCHHHHHHHHHHHHHH
Q 017633 340 ------FEAGF--TSLAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 340 ------~~~~~--~~~~~~~~~i~~~~~~l~~~ 364 (368)
...++ .+..+|++||++++++|+++
T Consensus 402 ~~~~~~~~~l~~~~s~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 402 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp CSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred eecccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence 01122 24567999999999999863
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.76 E-value=1.3e-17 Score=149.26 Aligned_cols=324 Identities=16% Similarity=0.122 Sum_probs=187.8
Q ss_pred CceeccCCCcHHHHHHHHHHHHcC-CCCC--CCChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 2 PQLIILFPSYLQVLAALGETMKKG-TSFG--APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 2 ~~~~~~g~~~~~v~~a~~~~~~~~-~~~~--~~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
|+...|+.||-.+-+.+.+++... .++. ...+...+.++.++++++ +...++++.|||.+++.++..+ ..+++
T Consensus 17 p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~--~~~~~ 94 (377)
T d1vjoa_ 17 PSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA--VEPGD 94 (377)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTC
T ss_pred CcceeecCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc--ccccc
Confidence 445667765554444444444331 2222 123677888889999886 4568889999999999999765 34677
Q ss_pred eEEEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
.+++....+++............ ......+..... +.+..+..... ++++.+.+...++.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~--~~~~~v~~~~~~~~tg~ 158 (377)
T d1vjoa_ 95 VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVF--------------SLEELRTALET--HRPAILALVHAETSTGA 158 (377)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCC--------------CHHHHHHHHHH--HCCSEEEEESEETTTTE
T ss_pred ccceeeechhhhhhhhhhhhhcccccccccCCCCcc--------------cchhhhhhhhc--Ccceeeeeeeeecccee
Confidence 77777766655433333222221 111111111111 34554544443 35677777778888999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc-CccccccCCCcchhh--hhhhccCCccceeeeehHHHHHHhcCC
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPA 232 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~-~~~~~~~~~~~di~s--~sK~~~~G~~iG~v~~~~~~~~~~~~~ 232 (368)
..+ ++++.++|+++|.++++|.+++ .|. ...++.++. |+++ -.|+++|+-.+|+++.++..++.....
T Consensus 159 ~~~----i~~i~~~~~~~g~~~~vDa~~~---~g~~~~~~~~~~~--d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~ 229 (377)
T d1vjoa_ 159 RQP----LEGVGELCREFGTLLLVDTVTS---LGGVPIFLDAWGV--DLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRR 229 (377)
T ss_dssp ECC----CTTHHHHHHHHTCEEEEECTTT---TTTSCCCTTTTTC--SEEECCSSSTTCSCSSCEEEEECHHHHHHHHTC
T ss_pred eec----hhhhhhhhhhccceEEEecchh---hhhhhhccccccc--ceeeecccccccCCCEEEEecchhhHHhhhhcc
Confidence 999 9999999999999999999995 222 234444554 5544 447777666788888888777655432
Q ss_pred CCcc-----------------ccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 017633 233 GPMY-----------------QAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGG 292 (368)
Q Consensus 233 ~~~~-----------------~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 292 (368)
.... .....+.+......+..+...+...+ ..++.+++.+++++.+.+.......... .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~ 308 (377)
T d1vjoa_ 230 RTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKE-Y 308 (377)
T ss_dssp SSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-G
T ss_pred CCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChH-h
Confidence 2100 01111233334444444544443332 3344444455555555443211111101 1
Q ss_pred eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHH-cCeeecCCCC----Cccccc---cCCCHHHHHHHHHHHHHH
Q 017633 293 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF----EAGFTS---LAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~~----~~~~~~---~~~~~~~i~~~~~~l~~~ 364 (368)
.....+.+.+ |++.+..++.+.|++ +||.++.|.. ..+|++ ...+++|+++++++|+++
T Consensus 309 rs~~v~~~~~-------------p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~ 375 (377)
T d1vjoa_ 309 RLPTLTTVCI-------------PDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQV 375 (377)
T ss_dssp BCSSEEEEEC-------------CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEC-------------CCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 1122334443 233446888888865 4999877532 235553 456899999999999998
Q ss_pred Hh
Q 017633 365 LR 366 (368)
Q Consensus 365 l~ 366 (368)
++
T Consensus 376 l~ 377 (377)
T d1vjoa_ 376 LR 377 (377)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1.8e-17 Score=145.67 Aligned_cols=218 Identities=15% Similarity=0.115 Sum_probs=155.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|++.++++.++ +..++++||+.|+..++..+ .+++|.|++.+..|++.....-..
T Consensus 56 ~~nPT~~~LE~~la~LEg~-~~a~~~~SGmaAi~~~l~~l--~~~Gd~vl~~~~~Yg~t~~l~~~~-------------- 118 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEGG-EAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHG-------------- 118 (392)
T ss_dssp -CCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHT--------------
T ss_pred CCChHHHHHHHHHHHHhCC-cceeehhhHHHHHHHHHHhh--ccCCCeeecccccchhhhhhhhhh--------------
Confidence 3567788999999999865 45666778999999998765 357889999998888864332221
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++..|+++++++++ ++++++++|.+.|+...+.+ +++|+++|+++|+++++|.+++.
T Consensus 119 --~~~~Gi~~~~~d~~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at---- 185 (392)
T d1gc0a_ 119 --IGEFGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT---- 185 (392)
T ss_dssp --GGGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH----
T ss_pred --hccCCcccccCCccCHHHHHHhCC---CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC----
Confidence 112334455666668999999998 68999999999999999999 99999999999999999999952
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
......+....|+ .|.+|.++| + .-.|.++++++.+...+.. ..........++..+..+...++.+ +-..+
T Consensus 186 -P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-~~~~~~G~~~~p~da~ll~rgl~TL--~lRm~ 261 (392)
T d1gc0a_ 186 -PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 261 (392)
T ss_dssp -HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred -ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-HHHHccCCcCChhhHHHHHhccccH--HHHHH
Confidence 1122233334454 578899986 4 6677778888776554310 1111122356788888887777755 33566
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIIDA 281 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~~ 281 (368)
+..+++..+.+.|++.
T Consensus 262 ~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 262 RHCANAQVLAEFLARQ 277 (392)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777777777777653
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=3.3e-17 Score=149.83 Aligned_cols=301 Identities=12% Similarity=0.021 Sum_probs=174.5
Q ss_pred hHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHH-HHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCC-C-CC
Q 017633 34 LENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRL-ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P-DS 108 (368)
Q Consensus 34 ~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 108 (368)
...++.++++++++ .....+++++|+++...++.+ .+....+.++|+.+...|.+...++...|.+...... + ..
T Consensus 95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~ 174 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCc
Confidence 34456667777766 356778888888766655533 3333333344455666688777777776664322211 1 11
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhch-
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 186 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~- 186 (368)
.+.. |+++|++++++. .+++.++++...++.+|...+ +++|+++|++||++|++|++|...
T Consensus 175 ~~~i-------------d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~ 237 (445)
T d3bc8a1 175 ELRT-------------DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 237 (445)
T ss_dssp EEEC-------------CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred cccc-------------CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhh
Confidence 1111 899999999863 346888888877777888888 999999999999999999999643
Q ss_pred -hcccC--ccccccCCCcchh--hhhhhccCCccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc
Q 017633 187 -RLAYG--GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260 (368)
Q Consensus 187 -~~g~~--~~~~~~~~~~di~--s~sK~~~~G~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~ 260 (368)
..... .... .+ ..|++ +..|.++++...|+++.+ +...+.+.. ...+.....+.+.+. ..+..+..
T Consensus 238 ~~~~~~~~~~~~-~~-~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~g~ 309 (445)
T d3bc8a1 238 SKCMHLIQQGAR-VG-RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRASASPSLDVL---ITLLSLGC 309 (445)
T ss_dssp HHHHHHHHHHHH-HS-CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCBCSHHHHHHH---HHHHHHHH
T ss_pred hhccccchhccC-cC-CcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhhcccCcchHHHH---HHHHHHhh
Confidence 11111 1111 11 23554 455999877677777664 555555542 111111111222222 33332222
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeec
Q 017633 261 ---PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 336 (368)
Q Consensus 261 ---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 336 (368)
....+....+.++++++|.++....+... .........++.+..... ....+..++...|.+.||...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~--------~~~~~~~~l~~~L~~~gI~~~ 381 (445)
T d3bc8a1 310 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG--------HHDKAVTQLGSMLFTRQVSGA 381 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS--------SSSCHHHHHHHHHHHTTCCSC
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc--------cCCCCHHHHHHHHHHcCCCcc
Confidence 33456677788888888888765554321 222222233333321110 122345678888888887432
Q ss_pred CC-----------------CC-------Cccc--cccCCCHHHHHHHHHHHHHHHhh
Q 017633 337 PS-----------------QF-------EAGF--TSLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 337 ~~-----------------~~-------~~~~--~~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.. +. ..++ ++..++++|++++++.|++++++
T Consensus 382 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~ 438 (445)
T d3bc8a1 382 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438 (445)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence 11 00 0012 24567999999999999999865
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.74 E-value=3.1e-16 Score=139.89 Aligned_cols=321 Identities=15% Similarity=0.050 Sum_probs=184.4
Q ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh
Q 017633 15 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 94 (368)
Q Consensus 15 ~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 94 (368)
++++.+.++.+.. ...-+...++++.++++++. ..+++++|||.|+.+|++.+ ...++|+|++++-+|.....+...
T Consensus 4 ~~~~~~~l~~~~~-~~~G~~~~~fE~~~~~~~~~-~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 4 LKYIEEVFKSNYI-APLGEFVNRFEQSVKDYSKS-ENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp HHHHHHHHHHTTT-SCTTHHHHHHHHHHHHHHCC-SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHHHHH
T ss_pred HHHHHHHHhcCCc-CCCCHHHHHHHHHHHHHHCc-CeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHHHhh
Confidence 4667777776422 11135567888889888854 47888999999999999765 456788999988777666555555
Q ss_pred hcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 017633 95 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 174 (368)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~ 174 (368)
.+..++..+-.+.... ...+.+........+++++++.... |...+ ++++.++|+++|
T Consensus 81 ~g~~pv~~Di~~~~~~---------------~~~~~~~~~~~~~~~~~aii~~~~~---G~~~d----~~~i~~~~~~~~ 138 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNI---------------DVDLLKLAIKECEKKPKALILTHLY---GNAAK----MDEIVEICKEND 138 (374)
T ss_dssp TTCEEEEECBCTTSSB---------------CHHHHHHHHHHCSSCCCEEEEECGG---GCCCC----HHHHHHHHHHTT
T ss_pred ccceeEeccccccccc---------------ccccccccchhcccccccccccccc---cchhh----hHHHHHHhhccC
Confidence 5444433221111111 2233333333222467777776655 44455 999999999999
Q ss_pred CEEEEehhhhchhcccCccccccCCCcchhh--h--hhhccCCccceeeee-hHHHHHHhc---CCCC--------cccc
Q 017633 175 ALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--L--GKIIGGGLPVGAYGG-RRDIMEMVA---PAGP--------MYQA 238 (368)
Q Consensus 175 ~~li~De~~~~~~~g~~~~~~~~~~~~di~s--~--sK~~~~G~~iG~v~~-~~~~~~~~~---~~~~--------~~~~ 238 (368)
++||+|.+|+- |..+.-...|..-|+.+ | +|.+++|- .|.++. ++++++.++ ..+. ...+
T Consensus 139 i~vIED~a~a~---g~~~~~~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G 214 (374)
T d1o69a_ 139 IVLIEDAAEAL---GSFYKNKALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYG 214 (374)
T ss_dssp CEEEEECTTCT---TCEETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCC
T ss_pred cchhhhhhhhh---cceECCeecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhccccccccccccccccccCC
Confidence 99999999962 22111122333335543 3 38988542 466655 567765543 1111 1124
Q ss_pred ccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCC--Ccc------c
Q 017633 239 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP--VYN------F 310 (368)
Q Consensus 239 ~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~ 310 (368)
..+..+.+.++.+...++.+ +.+.++.+++.+++.+.|.+.......+........+..+.+.... ... .
T Consensus 215 ~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (374)
T d1o69a_ 215 YNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINI 292 (374)
T ss_dssp CBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEEC
T ss_pred ccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccccccc
Confidence 55678888888888777655 3345555666666666665432111111111111111112111110 000 0
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCCCc------------------------cccc--cCCCHHHHHHHHHHHHHH
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------------------GFTS--LAHSSDDIQHTITAAEKV 364 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~------------------------~~~~--~~~~~~~i~~~~~~l~~~ 364 (368)
............++.+.|.++||.+++...+. ++++ ..++++|+++.++.|.++
T Consensus 293 ~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~ 372 (374)
T d1o69a_ 293 SQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKS 372 (374)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHH
Confidence 00001123456789999999999987653221 1222 456999999999999988
Q ss_pred Hh
Q 017633 365 LR 366 (368)
Q Consensus 365 l~ 366 (368)
++
T Consensus 373 lk 374 (374)
T d1o69a_ 373 IK 374 (374)
T ss_dssp HC
T ss_pred HC
Confidence 73
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=9.2e-17 Score=141.21 Aligned_cols=312 Identities=18% Similarity=0.088 Sum_probs=192.7
Q ss_pred CcHHHHHHHHHHHHcCCCCCC--CChhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 10 SYLQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
-+|+|+++|.+.. ..+.. ..+...+.++.++++++ +.+.++++.|||.+++.++..+ ..+++++++...+.+
T Consensus 11 v~~~V~~am~~~~---~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl--~~~g~~vlv~~~G~f 85 (348)
T d1iuga_ 11 LHPKALEALARPQ---LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKF 85 (348)
T ss_dssp CCHHHHHHHHSCC---CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHH
T ss_pred CCHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhc--ccccccceeecchHH
Confidence 3567777665422 22221 12456777888888877 5578999999999999999655 346778888877766
Q ss_pred CCchhhhhh-cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+........ .+..+.....+....+ ++++ .. ..+++.+++.++.+.+|...+ +++
T Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~g~~~--------------~~~~----~~--~~~~~~v~~~h~eTstG~~~~----i~~ 141 (348)
T d1iuga_ 86 SERFYEIALEAGLVVERLDYPYGDTP--------------RPED----VA--KEGYAGLLLVHSETSTGALAD----LPA 141 (348)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTCCC--------------CTTT----SC--CSSCSEEEEESEETTTTEECC----HHH
T ss_pred HHHHHHHHHhcCcccccccccCCCcc--------------cccc----cc--ccCCCeeEEEecchhhhhhcc----HHH
Confidence 644333222 2222221111111111 1211 11 135566777777777889999 999
Q ss_pred HHHHHHHhC--CEEEEehhhhchhcc-cCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCcc------
Q 017633 166 IRRITKENG--ALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 236 (368)
Q Consensus 166 i~~l~~~~~--~~li~De~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~~------ 236 (368)
|.++|++|+ .++++|.+++ .| ....++.++++.-+.+-.|+++|.-++|++++++++++.+.....+.
T Consensus 142 i~~~~~~~~~~~l~~vDavss---~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~ 218 (348)
T d1iuga_ 142 LARAFKEKNPEGLVGADMVTS---LLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAREL 218 (348)
T ss_dssp HHHHHHHHCTTCEEEEECTTT---BTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHH
T ss_pred HHHHHHhhhccceeechhhhc---ccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhh
Confidence 999999985 7889998885 22 23556667663333344599975557899999999888766422111
Q ss_pred -----ccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEee-ccceEEEEeecCCCccc
Q 017633 237 -----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNF 310 (368)
Q Consensus 237 -----~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 310 (368)
....++++....++..++++.+.++ ..++ .++.+..+..++......++...... ...+..+.+
T Consensus 219 ~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~-------- 288 (348)
T d1iuga_ 219 KAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEH-LALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL-------- 288 (348)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHH-HHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC--------
T ss_pred hhhccCcccccccchHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC--------
Confidence 1234466677888888899877543 3333 33444444555555444443221111 122344443
Q ss_pred chhcccccHHHHHHHHHHHHcCeeecCCCCC----ccccc--cCCCHHHHHHHHHHHHHHHhhC
Q 017633 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFE----AGFTS--LAHSSDDIQHTITAAEKVLRQI 368 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~----~~~~~--~~~~~~~i~~~~~~l~~~l~~~ 368 (368)
|++.+..++.+.|.++|+.+.+|..+ .+|+. -..+++|+++++++|+++++++
T Consensus 289 -----P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 289 -----PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp -----CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34445678999999999999887432 24542 3578999999999999999864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.73 E-value=2.8e-16 Score=142.94 Aligned_cols=333 Identities=13% Similarity=-0.021 Sum_probs=177.1
Q ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhh
Q 017633 15 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 94 (368)
Q Consensus 15 ~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 94 (368)
.+++..++..+...+.-++...+|.+.++++++ .+.+++++||+.|+.+++++. ..+++.|+. +..|+.+... ..
T Consensus 57 ~~~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~G-~e~al~~~SGt~An~~a~~~l--~~~Gd~Vi~-~~~f~~~~~~-i~ 131 (456)
T d1c7ga_ 57 SDKQWAGMMIGDEAYAGSENFYHLEKTVKELFG-FKHIVPTHQGRGAENLLSQLA--IKPGQYVAG-NMYFTTTRFH-QE 131 (456)
T ss_dssp EHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHC-CSEEEEESSHHHHHHHHHHHH--CCTTEEEEE-SSCCHHHHHH-HH
T ss_pred hHHHHHHHhccchhccCCchHHHHHHHHHHHhC-CCeEEECCCHHHHHHHHHHHh--cCCCCeEec-CcchHHHHHH-HH
Confidence 344434433333333457788999999999985 457788999999999999876 345555554 4444433222 22
Q ss_pred hcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 017633 95 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 173 (368)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~ 173 (368)
..|.......... .. .... ....-...|+++|++.++.+ +++++.++++..++..|....+.+.+++|.++|++|
T Consensus 132 ~~g~~~~~~~~~~--~~-~~~~-~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~ 207 (456)
T d1c7ga_ 132 KNGATFVDIVRDE--AH-DASL-NLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTY 207 (456)
T ss_dssp HTTEEEEECBCGG--GG-CTTC-CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HcCceeeeccccc--cc-cccc-cCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHc
Confidence 2222111000000 00 0000 00000011899999999864 346777778777777777777777799999999999
Q ss_pred CCEEEEehhhhc----h-hc-ccCcc-ccc------cCCCcchhh--hhhhccCCccceeeeeh-HHHHHHhcCCCCccc
Q 017633 174 GALLIFDEVMTG----F-RL-AYGGA-QEY------FGVTPDLTT--LGKIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQ 237 (368)
Q Consensus 174 ~~~li~De~~~~----~-~~-g~~~~-~~~------~~~~~di~s--~sK~~~~G~~iG~v~~~-~~~~~~~~~~~~~~~ 237 (368)
|+.+++|+++.. + .. ...+. ..- ..-..|+++ ++|.++++ ..|+++.+ +++++..+.......
T Consensus 208 ~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~-~GG~i~~~~~~l~~~~r~~~~~~~ 286 (456)
T d1c7ga_ 208 GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDEEMFSAAKELVVVYE 286 (456)
T ss_dssp TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEecccccccc-ceeEEEcCCHHHHHHHHHhccccC
Confidence 999999999831 1 10 01000 000 001135544 45776642 23566554 556655542111111
Q ss_pred -cccC-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchhcc
Q 017633 238 -AGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 315 (368)
Q Consensus 238 -~~t~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
..++ ..+...+.++...+......++.++..++.+++.++|.+. +.+...+..++.+.++........ +
T Consensus 287 g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~----g~~vv~p~g~~~v~vda~~~~~~i-----~ 357 (456)
T d1c7ga_ 287 GMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA----GVPIVEPTGGHAVFLDARRFCPHL-----T 357 (456)
T ss_dssp CCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT----TCCBCSSCCSSEEEEEHHHHCTTS-----C
T ss_pred CCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----cCCcccCCCCcceeEechhhccCC-----C
Confidence 1112 2233344444444444433445666677777887877764 333333344444444432211000 0
Q ss_pred cccHHHHHHHHH-HHHcCeeecCCCC------C-----------cccc--c-cCCCHHHHHHHHHHHHHHHh
Q 017633 316 SETTKFARFYRG-MLEEGVYFAPSQF------E-----------AGFT--S-LAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 316 ~~~~~~~~~~~~-l~~~Gi~~~~~~~------~-----------~~~~--~-~~~~~~~i~~~~~~l~~~l~ 366 (368)
...-.+.++... +.+.||...+.+. + .+|+ + ...|++++++++++|+++.+
T Consensus 358 ~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 358 QDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence 011123444444 4567887644211 0 1233 2 23499999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.73 E-value=7.9e-17 Score=144.57 Aligned_cols=314 Identities=13% Similarity=0.110 Sum_probs=184.2
Q ss_pred cHHHHHHHHHHHHcCCCCCC--CChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 017633 11 YLQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 86 (368)
Q Consensus 11 ~~~v~~a~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~ 86 (368)
+|+|+++|.+.. .++.. ..+...++++.++++++ +.+.++++.|||.+++.++..+ ..+++.+++...+.+
T Consensus 29 ~~~V~~Am~~~~---~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l--~~~~~~vl~~~~g~~ 103 (388)
T d2ch1a1 29 SKRVLTAMTNTV---LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 103 (388)
T ss_dssp CHHHHHHTTSCC---CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CHHHHHHhCcCC---CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh--ccccccccccccccc
Confidence 566776653321 12221 23567788888999887 4456778889999999999766 345677777765555
Q ss_pred CCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 017633 87 GHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 165 (368)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 165 (368)
+......... +........+..... +.+..+...... +++++.+..+++.+|...+ +++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~----~~~ 163 (388)
T d2ch1a1 104 AERAVEMSERYGADVRTIEGPPDRPF--------------SLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 163 (388)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cccchhhhhhhccccccccccccccc--------------chhhhhhhhccC--Ccceeeeeecccccccccc----hhh
Confidence 5433322222 221111111111111 566666666543 5777878788888899888 899
Q ss_pred HHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCCC--c------
Q 017633 166 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGP--M------ 235 (368)
Q Consensus 166 i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~~--~------ 235 (368)
+.++|+++|.++++|.+++- .+.....+.++. |++++| |+++|.-.+|++..++...+.....+. .
T Consensus 164 i~~~~~~~~~~~~vD~~ss~--g~~pid~~~~~~--d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
T d2ch1a1 164 VGQICHQHDCLLIVDAVASL--CGVPFYMDKWEI--DAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 239 (388)
T ss_dssp HHHHHHHTTCEEEEECTTTB--TTBCCCTTTTTC--CEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred hcchhccccceeeeeeeecc--cccccchhccCc--eEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccc
Confidence 99999999999999999962 122334444444 666666 767655678888888877665432111 0
Q ss_pred ------------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE----EeeccceEE
Q 017633 236 ------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC----GGYISGMFG 299 (368)
Q Consensus 236 ------------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~ 299 (368)
......+.+.....++..+++.+..+.......+... ....+.......+.... ......+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~ 318 (388)
T d2ch1a1 240 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIE-CAQILYEGLGKMGLDIFVKDPRHRLPTVTG 318 (388)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred hhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHhhhhhcccccccCCHHHhCCeEEE
Confidence 0012234556666676677776644443222222222 22222222222221111 111223445
Q ss_pred EEeecCCCcccchhcccccHHHHHHHHHHHHc-CeeecCCCCC----ccccc---cCCCHHHHHHHHHHHHHHHhh
Q 017633 300 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFE----AGFTS---LAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~~----~~~~~---~~~~~~~i~~~~~~l~~~l~~ 367 (368)
+.+ |++.+..++.+.|+++ ||.+++|... .+|++ ...+.|||++++++|+++|+.
T Consensus 319 ~~~-------------p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 319 IMI-------------PKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp EEC-------------CTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEC-------------CCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 544 2344467888888765 9999886432 34554 345789999999999999864
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.73 E-value=4.9e-17 Score=142.98 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=154.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|++.++++.++ +..++++||+.|+..++..+ .+++|+||+....|.+.....-..
T Consensus 60 ~~nPT~~~LE~~la~LEgg-~~a~~~sSGmaAi~~~l~~l--l~~Gd~vi~~~~~Yg~t~~~~~~~-------------- 122 (397)
T d1y4ia1 60 LGNPTTDALEKKLAVLERG-EAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHS-------------- 122 (397)
T ss_dssp TSCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTH--------------
T ss_pred CCCHHHHHHHHHHHHHhCC-ccceeehHHHHHHHHHHhhc--cCCCCeeeeecccccccchhhhcc--------------
Confidence 4567888999999998865 45666778999999888655 367889999998887754332211
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+.++..++..|.++++++++ ++++++++|++.|+...+.+ +++|+++|+++|+++++|.+.+
T Consensus 123 --l~~~Gi~~~~vd~~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~a----- 188 (397)
T d1y4ia1 123 --MPKFGINVRFVDAGKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFM----- 188 (397)
T ss_dssp --HHHTTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----
T ss_pred --cCCCceEeeccCCCCHHHHHHhcC---CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCccc-----
Confidence 111233455666668999999997 68999999999988888888 9999999999999999999985
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~ 265 (368)
+.+..+.+....|+ .|.+|.++| + .-.|.++++++.+...+.. ..........++..+..++..++.+ .-..+
T Consensus 189 tP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-~~~~~~G~~l~p~~a~l~~rgl~TL--~lRm~ 265 (397)
T d1y4ia1 189 SPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-GLKDITGGCMSPFNAWLTLRGVKTL--GIRME 265 (397)
T ss_dssp CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-HHHHTTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred CcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH-HHHhCcCCcCCHHHHHHHHcCcCcH--HHHHH
Confidence 22233334344454 578899996 3 5677778887766543210 1111122356788888888777755 33456
Q ss_pred HHHHHHHHHHHHHHH
Q 017633 266 YLNKITGELTQGIID 280 (368)
Q Consensus 266 ~~~~~~~~l~~~l~~ 280 (368)
+..+++..+.+.|++
T Consensus 266 ~~~~nA~~lA~~L~~ 280 (397)
T d1y4ia1 266 RHCENALKIARFLEG 280 (397)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 777778788777765
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.72 E-value=1.2e-16 Score=140.76 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=151.0
Q ss_pred CChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCC
Q 017633 31 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 110 (368)
Q Consensus 31 ~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (368)
.++....|+++++++.++ +..++++||+.|+..++... .+.++.|++....|++.........
T Consensus 65 ~nPt~~~LE~~la~LEgg-~~a~~~sSGMaAi~~~l~~l--~~~Gd~iv~~~~~Yg~t~~l~~~~~-------------- 127 (398)
T d1qgna_ 65 GNPTTVVLEEKISALEGA-ESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 127 (398)
T ss_dssp CCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhCC-ceEEEecCcchHHHHHHhhc--ccccccccccccccchhhhhhcccc--------------
Confidence 467788999999998754 56778889999999998755 3578899998888877543322211
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhccc
Q 017633 111 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~ 190 (368)
...+..+..++..+.++.++.+.. ++++++++|.+.|++..+.+ +++|+++|+++|+++|+|.+.+ +
T Consensus 128 --~~~gi~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~a-----t 194 (398)
T d1qgna_ 128 --PKMGITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFA-----T 194 (398)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----C
T ss_pred --cccccccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceee-----c
Confidence 112223334443355555544432 58999999999999888888 9999999999999999999985 2
Q ss_pred CccccccCCCcchh--hhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHH
Q 017633 191 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 266 (368)
Q Consensus 191 ~~~~~~~~~~~di~--s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~ 266 (368)
...++.+....|++ |.+|.++| + .-.|.+..++++++.++. .........++..+..++..++.+ +-..++
T Consensus 195 P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~---~~~~~G~~l~p~~a~ll~rgl~TL--~lRm~~ 269 (398)
T d1qgna_ 195 PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN---LHHILGGALNPNAAYLIIRGMKTL--HLRVQQ 269 (398)
T ss_dssp TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh---hcccCCCcCCHHHHHHHHhcchHH--HHHHHH
Confidence 33344455555654 78899996 3 566777778877776652 222223356788888877777655 334677
Q ss_pred HHHHHHHHHHHHHH
Q 017633 267 LNKITGELTQGIID 280 (368)
Q Consensus 267 ~~~~~~~l~~~l~~ 280 (368)
..+++..+.+.|++
T Consensus 270 ~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 270 QNSTALRMAEILEA 283 (398)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77888888888766
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=7.4e-17 Score=144.47 Aligned_cols=292 Identities=11% Similarity=0.077 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHhhCC-----CCCeEEEeCChHHHHHHHHHHHH-HhcCCceEEEEcCCCCCCchhhhhh-cCCCccccC-
Q 017633 33 LLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLG- 104 (368)
Q Consensus 33 ~~~~~l~~~l~~~~~-----~~~~v~~~~~gt~a~~~al~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~- 104 (368)
+...++.+.+.+.+. +.+.++||+|||++++.++..+. ...+++++++...+.++........ .+.......
T Consensus 36 ~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (382)
T d2bkwa1 36 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP 115 (382)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccc
Confidence 345566667777664 35789999999999999996552 2346788999887777654433332 222221111
Q ss_pred CCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEehh
Q 017633 105 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 182 (368)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~--~~li~De~ 182 (368)
.+..... +.+.+++.+... +++.+++..+.+++|...+ ++++.++|++|+ +++++|.+
T Consensus 116 ~~~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~ 175 (382)
T d2bkwa1 116 LKIGESV--------------PLELITEKLSQN--SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAV 175 (382)
T ss_dssp SSTTSCC--------------CHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECT
T ss_pred cCCCCcc--------------chhHHHHHhhhc--cchheeeeecccccccccc----chhhhhhccccccceeeeeecc
Confidence 1111111 678888877753 6678888888888898899 999999998875 99999999
Q ss_pred hhchhccc-CccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhcCCC------Cc-----------------c
Q 017633 183 MTGFRLAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAG------PM-----------------Y 236 (368)
Q Consensus 183 ~~~~~~g~-~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~~~~------~~-----------------~ 236 (368)
++ .|. ...++.+++ |++++| |+++|..++|+++.++++.+.+.... .+ .
T Consensus 176 qs---~g~~pid~~~~gi--D~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (382)
T d2bkwa1 176 CS---IGCEEFEFDEWGV--DFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGK 250 (382)
T ss_dssp TT---TTTSCCCTTTTTC--SEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTC
T ss_pred cc---cccccccccccCe--eEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccc
Confidence 96 332 344445555 666555 99976678999999988876654210 00 0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCHH---HHHHHHHHHHHHHHHHHHHhcCCceEEe--eccceEEEEeecCCCcccc
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGTY---EYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFE 311 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (368)
.....+++....+++.++++.+.+++.. ++.+++.+++++.+.+............ ....+..+..
T Consensus 251 ~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~--------- 321 (382)
T d2bkwa1 251 GAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV--------- 321 (382)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC---------
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC---------
Confidence 0123356777888888999988665542 2333344444444433211111100000 1112233332
Q ss_pred hhcccccHHHHHHHHHHHHcCeeecCCCCC-----ccccc---cCCCHHHHHHHHHHHHHHH
Q 017633 312 DAKKSETTKFARFYRGMLEEGVYFAPSQFE-----AGFTS---LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~~~~~---~~~~~~~i~~~~~~l~~~l 365 (368)
+ +..++.+.|.++||.++.|... .+|+. +..++++++++++.|+.+.
T Consensus 322 ----~---~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 322 ----A---DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp ----S---CHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred ----C---CHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 1 2367888899999999987432 24543 3445666666666665443
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=1.3e-16 Score=140.02 Aligned_cols=214 Identities=12% Similarity=0.141 Sum_probs=147.8
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|+++++++.++ +..++++||+.|+. ++..+ ...++.|++....|.+.. ..+...
T Consensus 46 ~~nPt~~~le~~la~LE~~-~~a~~fsSGMaAis-all~l--l~~Gd~vv~~~~~Yg~t~-~l~~~~------------- 107 (380)
T d1ibja_ 46 SGNPTRDALESLLAKLDKA-DRAFCFTSGMAALS-AVTHL--IKNGEEIVAGDDVYGGSD-RLLSQV------------- 107 (380)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHH-HHHTT--SCTTCEEEEESSCCHHHH-HHHHHT-------------
T ss_pred CCChHHHHHHHHHHHHcCC-ceEEehhhHHHHHH-HHHHh--hCCCCEEEEEeccccccc-chhhhh-------------
Confidence 3467788999999998754 56777889999986 44222 357888888877666543 222221
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
....+..+..++..|.++++++++ ++++++++|.+.|+...+.+ +++|+++|+++|+++|+|++.+.
T Consensus 108 --~~~~gi~~~~~d~~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at---- 174 (380)
T d1ibja_ 108 --VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS---- 174 (380)
T ss_dssp --SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC----
T ss_pred --hccccccccccCcchHHHHHHHhc---cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccc----
Confidence 112233455566668999999886 58999999999999988898 99999999999999999999852
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
.+....+....|+ .|.+|.++| + .-.|.++.+ +++.+.+.. .........++..+..+...++.+ +-..
T Consensus 175 -P~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~---~~~~~G~~l~p~~a~ll~rgl~Tl--~lRm 248 (380)
T d1ibja_ 175 -PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTM--ALRI 248 (380)
T ss_dssp -TTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HHHHTTCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred -cccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHh---hccccCCcCCHHHHHHHHhcchhh--hhhH
Confidence 2233333444454 578899996 3 556666554 556665542 112222256788888877777655 3356
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIID 280 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~ 280 (368)
++..+++..+.+.|++
T Consensus 249 ~~~~~nA~~lA~~L~~ 264 (380)
T d1ibja_ 249 EKQQENARKIAMYLSS 264 (380)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777888888877765
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=7.3e-16 Score=135.17 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=150.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|+++++++.++ +..++++||+.|+..++..+ ..+++.|++.+..|.+..........
T Consensus 47 ~~nPt~~~le~~la~LEgg-~~a~~~sSGMaAi~~~l~~l--~~~gd~vv~~~~~yg~t~~~~~~~~~------------ 111 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEGG-AGAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAK------------ 111 (384)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHT------------
T ss_pred CCCHHHHHHHHHHHHHhCC-CceEEecChHHHHHHHHhhc--ccccceecccccccchhhhhhhhhhc------------
Confidence 3467788999999998854 56777779999999998655 35788888888777665433322211
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g 189 (368)
..+..+..++..|.+++++.+. ++++++++|++.|++..+.+ +++|+++|+++|+++|+|++.+
T Consensus 112 ----~~g~~~~~~d~~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~a----- 175 (384)
T d1cs1a_ 112 ----RGCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFL----- 175 (384)
T ss_dssp ----TTSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-----
T ss_pred ----ccccccccccCCCHHHHHhhcc---ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEecccc-----
Confidence 1122344555558999999998 58899999999999888888 9999999999999999999984
Q ss_pred cCccccccCCCcch--hhhhhhccC-C-ccceeeee-hHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 190 YGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 190 ~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
+......+....|+ .|.+|.++| | .-.|.++. ++.+.+.+.. .........++..+..+...++.+ .-..
T Consensus 176 tP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~---~~~~~G~~~~p~~a~ll~rgL~TL--~lRm 250 (384)
T d1cs1a_ 176 SPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRM 250 (384)
T ss_dssp CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred CcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhh---hhhhhhhccccccHHHHhhccchh--HHHH
Confidence 12223333334454 588899996 4 56676766 4555554441 112223356788888877777655 3345
Q ss_pred HHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIID 280 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~ 280 (368)
++..+++..+.+.|++
T Consensus 251 ~~~~~nA~~lA~~L~~ 266 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQT 266 (384)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 6677777777777754
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.68 E-value=8.3e-16 Score=136.85 Aligned_cols=307 Identities=14% Similarity=0.082 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhc-CCceEEEEcCCCCCCch
Q 017633 12 LQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-GRERIIKFEGCYHGHAD 90 (368)
Q Consensus 12 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~-~~~~vi~~~~~~~~~~~ 90 (368)
++-++++.+.+..+. +. .-+...+++++++++++. +.+++++|||.|+.++++...... +++.||+.+-++.....
T Consensus 12 ~~~~~~v~~~l~~~~-~~-~G~~v~~fE~~~~~~~g~-k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ 88 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQ-LT-QGKRSLLFEEALCEFLGV-KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATAN 88 (371)
T ss_dssp HHHHHHHHHHHTSSC-CS-SSHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHH
T ss_pred HHHHHHHHHHHcCCC-cc-CCHHHHHHHHHHHHHHCc-CeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccce
Confidence 445667777776532 22 345678888999998854 467888899999999998653222 23468886655554433
Q ss_pred hhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 017633 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 170 (368)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~ 170 (368)
+.+..+..++..+ ....... +.+++++.++ ++++++++.+.. |...+ ++++.++|
T Consensus 89 ai~~~G~~pv~vD-i~~~~~~--------------~~~~~~~~~~---~~t~avi~vh~~---G~~~~----~~~i~~~~ 143 (371)
T d2fnua1 89 MLLESGYTPVFAG-IKNDGNI--------------DELALEKLIN---ERTKAIVSVDYA---GKSVE----VESVQKLC 143 (371)
T ss_dssp HHHHTTCEEEECC-BCTTSSB--------------CGGGSGGGCC---TTEEEEEEECGG---GCCCC----HHHHHHHH
T ss_pred eeeccCccccccc-ccccccc--------------cchhhhhhcc---chhhcccccccc---ccccc----cccccccc
Confidence 3333333333322 2111111 3455566555 578888876655 55556 99999999
Q ss_pred HHhCCEEEEehhhhchhcccCccccccCCCcchh--hh--hhhccCCccceeeee-hHHHHHHhcC---CCC--------
Q 017633 171 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TL--GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP-------- 234 (368)
Q Consensus 171 ~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~--s~--sK~~~~G~~iG~v~~-~~~~~~~~~~---~~~-------- 234 (368)
+++|++||+|.+|+ .|..+.-...|..-|+. || +|.+++|- .|+++. ++++.+.++. .+.
T Consensus 144 ~~~~i~lIEDaaqa---~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (371)
T d2fnua1 144 KKHSLSFLSDSSHA---LGSEYQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEG 219 (371)
T ss_dssp HHHTCEEEEECTTC---TTCEETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred cccchhhccchhhc---cCceeccccCCcccccccccccccccccccc-ceEEEeechhhhhhccccccccccccccccc
Confidence 99999999999996 22222222233333443 33 49988553 566655 4566655442 221
Q ss_pred --ccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCceE------EeeccceEEEEeecCC
Q 017633 235 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC------GGYISGMFGFFFTEGP 306 (368)
Q Consensus 235 --~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 306 (368)
...+..+..+.+.++.++..++.+ +.+.++.+++.+++.+.|.+ .+.... .......+.+.+...
T Consensus 220 ~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~- 292 (371)
T d2fnua1 220 EVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKD----NPYFTPLHPLLKDKSSNHLYPILMHQK- 292 (371)
T ss_dssp EESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----CSSEEESGGGCSSCCCCSCEEEEECGG-
T ss_pred ccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhcccccc----ccccccccccccccccccccccccccc-
Confidence 011455667888888877777644 33444555555555554443 322111 111222233333211
Q ss_pred CcccchhcccccHHHHHHHHHHHHcCeeecCCCCCc-------------------------ccc--ccCCCHHHHHHHHH
Q 017633 307 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------------------------GFT--SLAHSSDDIQHTIT 359 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~-------------------------~~~--~~~~~~~~i~~~~~ 359 (368)
......++.+.|.++||.+++...+. +++ ...++++|+++.++
T Consensus 293 ----------~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~ 362 (371)
T d2fnua1 293 ----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH 362 (371)
T ss_dssp ----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHH
Confidence 11224678999999999987653221 122 24569999999999
Q ss_pred HHHHHHhh
Q 017633 360 AAEKVLRQ 367 (368)
Q Consensus 360 ~l~~~l~~ 367 (368)
.|.++++.
T Consensus 363 ~i~~~~~~ 370 (371)
T d2fnua1 363 SVLKTFES 370 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.67 E-value=7.4e-16 Score=141.34 Aligned_cols=325 Identities=10% Similarity=-0.027 Sum_probs=170.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCch-hhhhhcCCCccccCCCC-
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPD- 107 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 107 (368)
.+.....++++.+++.++ .++++|++|||++.+.++..+. ..++|.||+ +...|.+.. ....+.+.+........
T Consensus 63 ~~~~~i~eae~~~A~~~g-a~~a~f~~~Gtt~~n~a~i~a~-~~~gd~Vi~-~~~~H~Sv~~~~~~l~~~~~~~~~~~~~ 139 (462)
T d1c4ka2 63 IHEGPAVAAEKHAARVYN-ADKTYFVLGGSSNANNTVTSAL-VSNGDLVLF-DRNNHKSVYNSALAMAGGRPVYLQTNRN 139 (462)
T ss_dssp TTBTHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHHH-CCTTCEEEE-ETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred CCCHHHHHHHHHHHHHhC-CCeEEEECCchHHHHHHHHHHh-cCCCCeEEe-cccchHHHHHHHHHHhcCCceeeecccc
Confidence 345677889999999996 4678888889887777764332 346666666 445666544 33333333222111100
Q ss_pred CCCCCCCCCCcccccCCCCHHHHHHHHHc------CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeh
Q 017633 108 SPGVPKGATYETLTAPFNDVSALENLFEN------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~le~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De 181 (368)
..+.. .+.....+ +.+.+++.+.. ...++..+++...++..|.+.+ +++|+++|++||++|++|+
T Consensus 140 ~~g~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~ 210 (462)
T d1c4ka2 140 PYGFI--GGIYDSDF---DEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDS 210 (462)
T ss_dssp TTCCE--EEECGGGS---CHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEEC
T ss_pred ccccc--CCCChHHh---hHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEec
Confidence 01110 00000011 22333322211 1134555556666677899999 9999999999999999999
Q ss_pred hhh-ch-hccc-CccccccC------CCcchh--hhhhhccCCccceeeeehHHHHHHhcCCC-------CccccccCCC
Q 017633 182 VMT-GF-RLAY-GGAQEYFG------VTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG-------PMYQAGTLSG 243 (368)
Q Consensus 182 ~~~-~~-~~g~-~~~~~~~~------~~~di~--s~sK~~~~G~~iG~v~~~~~~~~~~~~~~-------~~~~~~t~~~ 243 (368)
+|. ++ ..+. .......+ ...|++ |+.|.+++.-..+++..++..+....... ......+.++
T Consensus 211 A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp 290 (462)
T d1c4ka2 211 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP 290 (462)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSC
T ss_pred hhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCc
Confidence 994 33 1111 01111111 123655 56698874323334444443322111000 0112345567
Q ss_pred CHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcC--CceEEeec------------------------
Q 017633 244 NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI------------------------ 294 (368)
Q Consensus 244 ~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~------------------------ 294 (368)
+...+++..++...+.. +++.++..++.+++++++.++..... ....+.+.
T Consensus 291 ~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (462)
T d1c4ka2 291 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAK 370 (462)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCT
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcch
Confidence 77777777777766643 34566777888888888887532110 00000000
Q ss_pred --------cceEE-----EEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCCccc--cccCCCHHHHHHHHH
Q 017633 295 --------SGMFG-----FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTIT 359 (368)
Q Consensus 295 --------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~--~~~~~~~~~i~~~~~ 359 (368)
..... +.+..+.+..........+..+.++.+.|.++||.+...+...++ ++...|++|++++++
T Consensus 371 ~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~ 450 (462)
T d1c4ka2 371 WHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLIT 450 (462)
T ss_dssp TTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHH
T ss_pred hccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHH
Confidence 00000 111110000000000000112467889999999987655544444 466789999999999
Q ss_pred HHHHHHh
Q 017633 360 AAEKVLR 366 (368)
Q Consensus 360 ~l~~~l~ 366 (368)
+|+++.+
T Consensus 451 aL~ei~r 457 (462)
T d1c4ka2 451 QLLQLQR 457 (462)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=9.6e-16 Score=135.05 Aligned_cols=215 Identities=10% Similarity=-0.001 Sum_probs=147.9
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|.+.++++.++ +..++++||+.|+..++... ..+++.|++...-|.+.... +...
T Consensus 55 ~~nPt~~~le~~la~LEg~-~~a~~~~SGMaAi~~~l~~l--~~~Gd~iv~~~~~Yg~T~~l-~~~~------------- 117 (391)
T d1cl1a_ 55 RGTLTHFSLQQAMCELEGG-AGCVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDF-CSKI------------- 117 (391)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTSCHHHHHH-HHHT-------------
T ss_pred CCChhHHHHHHHHHHHhCC-ccEEEeccccceeeehhhcc--cCCCCeEEEecccccchhhh-hhhc-------------
Confidence 4567888999999998754 67778889999999998655 35788888887777664322 2211
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCEEEEehhhhchh
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFR 187 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~--~~~li~De~~~~~~ 187 (368)
....+.++..++..|.++++++++ ++++++++|...|+...+.+ +++++++|+++ |+++++|++.+
T Consensus 118 --l~~~Gi~~~~~d~~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~a--- 185 (391)
T d1cl1a_ 118 --LSKLGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA--- 185 (391)
T ss_dssp --GGGGTCEEEEECTTCGGGGGGTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT---
T ss_pred --ccccccccccccCccccccccccc---cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEecccc---
Confidence 112233455555557888887776 68999999999988888888 99999999875 99999999995
Q ss_pred cccCccccccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCH
Q 017633 188 LAYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 263 (368)
Q Consensus 188 ~g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~ 263 (368)
+....+.+....|+ .|.+|.++| + .-.|.++.+++..+.+... .....-..++..+..+...++.+ .-.
T Consensus 186 --tP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~---~~~~G~~~~p~~a~ll~rgl~TL--~lR 258 (391)
T d1cl1a_ 186 --AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN---AYLMGQMVDADTAYITSRGLRTL--GVR 258 (391)
T ss_dssp --TTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH---HHHTTCCCCHHHHHHHHHHHTTH--HHH
T ss_pred --chhhhcccccccceEEeecchhccccccccccceeccccccccchhh---hhcccccCCchhhhhhhccchhH--HHH
Confidence 22233334444454 578899996 3 5667777777666555421 11122245777777776666644 334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 264 YEYLNKITGELTQGIID 280 (368)
Q Consensus 264 ~~~~~~~~~~l~~~l~~ 280 (368)
.++..+++..+.+.|++
T Consensus 259 ~~~~~~nA~~vA~~L~~ 275 (391)
T d1cl1a_ 259 LRQHHESSLKVAEWLAE 275 (391)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777777777777765
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1e-14 Score=132.07 Aligned_cols=323 Identities=11% Similarity=-0.022 Sum_probs=187.2
Q ss_pred CcHHHHHHHHHHHHcCCC----CCCCChhHHHHHHHHHhhCCC------CCeEEEeCChHHHHHHHHHHHHHh-------
Q 017633 10 SYLQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPS------IEMVRFVNSGTEACMGVLRLARAF------- 72 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~------~~~v~~~~~gt~a~~~al~~~~~~------- 72 (368)
-+|++.+.+.+.+.++.. |....+.+.++.++++++++- ...-.+|+|||+|+..++.+++..
T Consensus 66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~ 145 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 145 (450)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence 567888888877766322 112246788899999998861 123688999999999999776532
Q ss_pred ---cCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEccc
Q 017633 73 ---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 149 (368)
Q Consensus 73 ---~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~ 149 (368)
.....+++ ....|.+...+....|.+..........+.. |+++|++++. +++.++++...
T Consensus 146 ~g~~~~~~~~~-~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~-------------d~~~L~~~i~---~~t~~Vv~t~g 208 (450)
T d1pmma_ 146 AGKPTDKPNLV-CGPVQICWHKFARYWDVELREIPMRPGQLFM-------------DPKRMIEACD---ENTIGVVPTFG 208 (450)
T ss_dssp HTCCCSCCEEE-ESSCCHHHHHHHHHTTCEEEECCCBTTBCSC-------------CHHHHHHHCC---TTEEEEECBBS
T ss_pred cCCCCCCceEE-ecccHHHHHHHHHHcCCCceEeeecCCCCcC-------------cHHHHHHHhh---hCceEEEeeee
Confidence 12233444 4566877777777777765443322222222 8999999998 46777777776
Q ss_pred CCCCCcccCCHHHHHHHHHHH------HHhCCEEEEehhhhch-h--cccCccccccCC-Ccchhhhh--hhccCCccce
Q 017633 150 VGNSGFIAPKPDFLNAIRRIT------KENGALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVG 217 (368)
Q Consensus 150 ~~~~g~~~~~~~~l~~i~~l~------~~~~~~li~De~~~~~-~--~g~~~~~~~~~~-~~di~s~s--K~~~~G~~iG 217 (368)
.+.+|.+-+ +++|.++| +++|+++++|.++.|+ . ....... ..++ ..|.+++| |.+.+...+|
T Consensus 209 tt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~-~~~~~~aDSi~~s~HK~~~~p~g~g 283 (450)
T d1pmma_ 209 VTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW-DFRLPRVKSISASGHKFGLAPLGCG 283 (450)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSCE
T ss_pred eccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhh-hhcccceeEeecChhhccCCCCCee
Confidence 666787777 66666664 5589999999999765 1 1111000 0121 24666655 8877778899
Q ss_pred eeeehHH-HHHH-hcCC----CCccccccC--CCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcC
Q 017633 218 AYGGRRD-IMEM-VAPA----GPMYQAGTL--SGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAG 286 (368)
Q Consensus 218 ~v~~~~~-~~~~-~~~~----~~~~~~~t~--~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~ 286 (368)
+++.++. .... +... +......+. +-+..........+..+..++ ..++..++++++.++|++ .+
T Consensus 284 ~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~----~~ 359 (450)
T d1pmma_ 284 WVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK----LG 359 (450)
T ss_dssp EEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TS
T ss_pred EEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh----CC
Confidence 9987543 2221 1100 000111122 122233334445555554433 334444555555555544 44
Q ss_pred CceEE-e----eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCC-----CCC--ccc--cccCCCHH
Q 017633 287 HAICG-G----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-----QFE--AGF--TSLAHSSD 352 (368)
Q Consensus 287 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~--~~~--~~~~~~~~ 352 (368)
..... . ..-+.+.|.+..... ...+..++.+.|.++|..+... ... ..+ +.-..|++
T Consensus 360 ~~el~~~~~p~~~l~~V~Fr~~~~~~---------~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e 430 (450)
T d1pmma_ 360 PYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD 430 (450)
T ss_dssp CEEEEEECCTTTBSSEEEEEECTTCC---------CSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred CeEEEeCCCCCCceEEEEEecCCccc---------CCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHH
Confidence 22122 1 112345555543211 1123467899999999776422 111 122 34556999
Q ss_pred HHHHHHHHHHHHHhh
Q 017633 353 DIQHTITAAEKVLRQ 367 (368)
Q Consensus 353 ~i~~~~~~l~~~l~~ 367 (368)
+++++++.|++++++
T Consensus 431 ~~d~lv~dl~~~v~~ 445 (450)
T d1pmma_ 431 FAELLLEDYKASLKY 445 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.64 E-value=5.6e-16 Score=133.88 Aligned_cols=211 Identities=12% Similarity=0.065 Sum_probs=144.5
Q ss_pred HHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCC
Q 017633 37 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 116 (368)
Q Consensus 37 ~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (368)
.|+++++++.+ .+..++++||+.|+..++..+ .+++|+|++...-|++....+-.. .+..+
T Consensus 2 aLE~~la~Leg-~~~a~~~sSGMaAi~~~l~~l--l~~Gd~iv~~~~~Yg~t~~~~~~~----------------l~~~g 62 (331)
T d1pffa_ 2 ALEGKIAKLEH-AEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQ----------------LRKFG 62 (331)
T ss_dssp HHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTH----------------HHHTT
T ss_pred HHHHHHHHHhC-CCeEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHH----------------HHhcC
Confidence 46777877764 456777789999998888655 357889999888887754322211 11223
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCEEEEehhhhchhcccCcccc
Q 017633 117 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGFRLAYGGAQE 195 (368)
Q Consensus 117 ~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~-~~~~~~li~De~~~~~~~g~~~~~~ 195 (368)
.++..++..|.+.++++++ ++++.+++|.+.|++..+.+ ++++++++ +++|+++|+|.+.+.. ...+
T Consensus 63 i~~~~~d~~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-----~~~~ 130 (331)
T d1pffa_ 63 VEVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-----ILTN 130 (331)
T ss_dssp CEEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-----HHCC
T ss_pred eEEEEecccchhhHhhhcc---cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-----cccc
Confidence 4556666668899988887 68999999999988888888 89899885 5689999999998522 1222
Q ss_pred ccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHH
Q 017633 196 YFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 271 (368)
Q Consensus 196 ~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 271 (368)
.+....|+ .|.+|.++| + .-.|.++.+++........ ..........++..+......++.+ .-..++..+++
T Consensus 131 pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-~~~~~~G~~l~p~~a~ll~rgl~Tl--~~Rm~~~~~nA 207 (331)
T d1pffa_ 131 PLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-GIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENA 207 (331)
T ss_dssp GGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ccccCCCEEEecchhhcCCCCccccccccccccchhhhhhh-hhhhccCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33333454 588899996 4 5677777776554443211 1111122256788888888888876 34567788888
Q ss_pred HHHHHHHHHH
Q 017633 272 GELTQGIIDA 281 (368)
Q Consensus 272 ~~l~~~l~~~ 281 (368)
..+.+.|++.
T Consensus 208 ~~lA~~L~~h 217 (331)
T d1pffa_ 208 QKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhhhC
Confidence 8888888763
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.62 E-value=3.7e-14 Score=129.18 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=177.9
Q ss_pred ChhHHHHHHHHHhhCCC----------CCeEEEeCChHHHHHHHHHHHHHhc----------------CCceEEEEcCCC
Q 017633 32 CLLENVLAEMVISAVPS----------IEMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGCY 85 (368)
Q Consensus 32 ~~~~~~l~~~l~~~~~~----------~~~v~~~~~gt~a~~~al~~~~~~~----------------~~~~vi~~~~~~ 85 (368)
++.+.++.+++++.++- ....++++|||+|+..++.++|... ..+.++..+...
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 35677888889998862 1357899999999999998876421 013466667777
Q ss_pred CCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHc---CCCCeEEEEEcccCCCCCcccCCHHH
Q 017633 86 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDF 162 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (368)
|.+...++...|.++..........+ |+++|++.+.+ ....+.+++..-....+|.+-|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~m--------------d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---- 253 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAM--------------RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---- 253 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCc--------------CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----
Confidence 87777777777776544333222222 89999999975 2223556666666666788777
Q ss_pred HHHHHHHHHHhCCEEEEehhhhch-hcccCccccccCC-Ccchhh--hhhhccCCccceeeeehH-HH-HHHhcCCCCcc
Q 017633 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DI-MEMVAPAGPMY 236 (368)
Q Consensus 163 l~~i~~l~~~~~~~li~De~~~~~-~~g~~~~~~~~~~-~~di~s--~sK~~~~G~~iG~v~~~~-~~-~~~~~~~~~~~ 236 (368)
+++|+++|++||+++++|.+|.|+ ...........++ ..|-++ ..|.+...+.+|.++.++ .. ...+.....+.
T Consensus 254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------
T ss_pred HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhh
Confidence 999999999999999999999776 2211111111122 235444 459988777899887754 22 22222111000
Q ss_pred -------------ccccCCCC-HHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcC-CceEEeeccceE
Q 017633 237 -------------QAGTLSGN-PLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMF 298 (368)
Q Consensus 237 -------------~~~t~~~~-~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~ 298 (368)
...+...+ .........+++.+..+++ .++..+.++++.+.+++ .+ +....+..-+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~----~~~fel~~~p~l~iV 409 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ----DPRFEVCAEVTLGLV 409 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECSCCCSSEE
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEECCCceEEE
Confidence 00111111 1222334445555544443 44445555555555544 33 222222333445
Q ss_pred EEEeecCCCcccchhcccccHHHHHHHHHHHHcC-eeecCC---CCCcccc---ccCCCHHHHHHHHHHHHHHHhh
Q 017633 299 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~~~~~---~~~~~~~---~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.|.+.. ......++.+.|.+.| +++.+. +...+|+ +..++++|++.+++.|+++.++
T Consensus 410 ~Fr~~~------------~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ 473 (476)
T d1js3a_ 410 CFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (476)
T ss_dssp EEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEccC------------ChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 555421 2223467888888887 445443 2223343 3567899999999999998765
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.61 E-value=5.7e-15 Score=130.17 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=150.0
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|++.++++.++ +..++++||+.|+..++... ..+++.|++.+..|.+........
T Consensus 56 ~~nPT~~~le~~la~LEg~-~~a~~~sSGmaAi~~~~l~l--~~~gd~vv~~~~~yg~t~~~~~~~-------------- 118 (394)
T d1e5ea_ 56 LGNPTVSNLEGKIAFLEKT-EACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHA-------------- 118 (394)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTH--------------
T ss_pred CCCHHHHHHHHHHHHHhCC-cceeeeccchHHHHHHHHhh--cccccccccccceeehhhHhHHHH--------------
Confidence 4567788999999998754 45667778999999887555 357788888777676643222211
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEehhhhchhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~-~~~~li~De~~~~~~~ 188 (368)
....+..+..++..|.++++++++ ++++++++|+..|++..+.+ ++++++++++ +|+++|+|...+
T Consensus 119 --~~~~gi~~~~~d~~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~a---- 185 (394)
T d1e5ea_ 119 --LTKFGIQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFC---- 185 (394)
T ss_dssp --HHHTTCEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTT----
T ss_pred --hhccceeeeccCCCCHHHHHHhhc---ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCccc----
Confidence 112233456666668899999997 68999999999988888888 9989887765 689999999985
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccceeeeehHHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHccCCHH
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 264 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~ 264 (368)
+....+.+....|+ .|.+|.++| + .-.|.++++++.+...+.. ..........++..+..+...++.+ .-..
T Consensus 186 -tP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~-~~~~~~G~~lsp~~a~ll~rgl~TL--~lRm 261 (394)
T d1e5ea_ 186 -SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV-GIKDITGSVISPHDAWLITRGLSTL--NIRM 261 (394)
T ss_dssp -CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred -CcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH-HHHHhhCCCCChHHHHHHHhhchhH--HHHH
Confidence 22234444444455 578899996 4 5677777777765543311 1111122256788888877777755 3356
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017633 265 EYLNKITGELTQGIIDA 281 (368)
Q Consensus 265 ~~~~~~~~~l~~~l~~~ 281 (368)
++..+++..+.+.|++.
T Consensus 262 ~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 262 KAESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 77778888888888763
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=4.8e-15 Score=130.45 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=143.4
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|+++++++.++ +..++++||+.|+..++.+ ...++.|++....|++........
T Consensus 52 ~gnPT~~~lE~~la~LE~~-~~a~~~sSGmaAi~~~l~~---l~~gd~iv~~~~~yg~t~~~~~~~-------------- 113 (393)
T d1n8pa_ 52 SQNPNRENLERAVAALENA-QYGLAFSSGSATTATILQS---LPQGSHAVSIGDVYGGTHRYFTKV-------------- 113 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHHT---SCSSCEEEEESSCCHHHHHHHHHT--------------
T ss_pred CCChHHHHHHHHHHHHhCC-ceEEEecCchhHHHhhhhc---ccCCCeeeeeeeecccchhhhhhh--------------
Confidence 3467788999999998854 5566777899888644432 356789999888887654332221
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCEEEEehhhhc
Q 017633 110 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK----ENGALLIFDEVMTG 185 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~----~~~~~li~De~~~~ 185 (368)
....+.++..++. +.++++++++ ++++++++|.+.|+...+.+ +++|+++|+ ++|+++|+|.....
T Consensus 114 --l~~~gi~~~~~~~-~~~~~~~~i~---~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~at 183 (393)
T d1n8pa_ 114 --ANAHGVETSFTND-LLNDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp --STTTCSCCEEESS-HHHHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred --hhcccceeEEeec-chHHHHHHhh---hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccC
Confidence 1112223333432 4678888887 68999999999999888888 999999999 67899999999852
Q ss_pred hhcccCccccccCCCcch--hhhhhhccC-C-ccceeeeeh-HHHHHHhcCCCCccccccCCCCHHHHHHHHHHHHHHcc
Q 017633 186 FRLAYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260 (368)
Q Consensus 186 ~~~g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~ 260 (368)
- ...+.+....|+ .|.+|.++| + .-.|.++.+ +.+.+.++. .........++..+..++..++.+
T Consensus 184 P-----~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~---~~~~~G~~~~p~~a~ll~rgl~Tl-- 253 (393)
T d1n8pa_ 184 P-----YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF---LQNAIGAIPSPFDAWLTHRGLKTL-- 253 (393)
T ss_dssp H-----HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred c-----ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHH---HHhhcCCCCChHHHHHHHhCCcch--
Confidence 1 122223333454 578899996 4 667776554 556666652 112222256788888877777655
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 017633 261 PGTYEYLNKITGELTQGIID 280 (368)
Q Consensus 261 ~~~~~~~~~~~~~l~~~l~~ 280 (368)
+-..++..+++..+.+.|+.
T Consensus 254 ~lR~~~~~~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 254 HLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 33567777778888888754
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.55 E-value=1.5e-14 Score=128.18 Aligned_cols=319 Identities=12% Similarity=-0.020 Sum_probs=169.3
Q ss_pred ccCCCc----HHHHHHHHHHHHcCCC---------CCC--CChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHH
Q 017633 6 ILFPSY----LQVLAALGETMKKGTS---------FGA--PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRL 68 (368)
Q Consensus 6 ~~g~~~----~~v~~a~~~~~~~~~~---------~~~--~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~ 68 (368)
+||.+| ++|+++|.+.+.+..+ |.. ..+...+.++.+++.++ +.+.+++++|++++...++..
T Consensus 6 ~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~ 85 (361)
T d2c0ra1 6 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM 85 (361)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH
T ss_pred ccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHh
Confidence 466654 6888888887654211 111 13677889999999997 344788877777666555533
Q ss_pred HHHhcCCceEEEEcCCCCCCchhhhhh-cCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEc
Q 017633 69 ARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 147 (368)
Q Consensus 69 ~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~ 147 (368)
. ...+++.+++...+.++.....+.. .+..+.....+..... +++++++.+... .. .+++
T Consensus 86 ~-l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~--~~v~ 146 (361)
T d2c0ra1 86 N-FLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYM--------------TLPKLQEIQLQD--NA--AYLH 146 (361)
T ss_dssp H-HCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTC--------------SCCCGGGCCCCT--TE--EEEE
T ss_pred c-cccCCCceEEEeechhhhhhhhhhhhcCceeeeecccccccc--------------chhhhhhhcccC--cc--eEEE
Confidence 3 1345667776665555443332222 2332222111111111 444455444421 22 2222
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHH
Q 017633 148 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIME 227 (368)
Q Consensus 148 ~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~ 227 (368)
+++|...+ ++++.++|++||+++++|.+++- .+..... ...+.|+.+.+|.++++-..++++..+.+.+
T Consensus 147 ---~~tg~~~~----~~~i~~~~~~~~al~~vDavss~--g~~~id~--~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~ 215 (361)
T d2c0ra1 147 ---LTSNETIE----GAQFKAFPDTGSVPLIGDMSSDI--LSRPFDL--NQFGLVYAGAQKNLGPSGVTVVIVREDLVAE 215 (361)
T ss_dssp ---EESEETTT----TEECSSCCCCTTSCEEEECTTTT--TSSCCCG--GGCSEEEEETTTTTCCSSCEEEEEEGGGSSS
T ss_pred ---Eeccccee----cceEEEeeccCCceEEEEeeccc--ccccccc--ccceeEEEecccccccccCcEEEEEhHHhhh
Confidence 23455666 67888999999999999999951 1223333 3445678888999983223333344443322
Q ss_pred HhcCCCCc--------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceEE---e-ec
Q 017633 228 MVAPAGPM--------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICG---G-YI 294 (368)
Q Consensus 228 ~~~~~~~~--------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~---~-~~ 294 (368)
.-...... ........++........+.......+......++.+..+..+........ ..... . ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS 295 (361)
T d2c0ra1 216 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRS 295 (361)
T ss_dssp CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBC
T ss_pred CccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhcc
Confidence 21111100 011122233333333333333333333333344444444444444332221 11111 1 11
Q ss_pred cceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 295 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
.....+.+ ++..+..++.+.|.++||.+..|... .+|+ ..+++.||++++++.|++..++
T Consensus 296 ~~~~~~~~-------------~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 296 DMNITFRL-------------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SSEEEEEC-------------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEC-------------CCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 22334433 34556789999999999999887322 2454 4556999999999999987643
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=5.7e-14 Score=124.25 Aligned_cols=220 Identities=18% Similarity=0.130 Sum_probs=142.1
Q ss_pred CCChhHHHHHHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhhhhcCCCccccCCCCCC
Q 017633 30 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 109 (368)
Q Consensus 30 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
..++....|+++++++.++ +..++++||+.|+..++..+ ..+++.||+....|++.........
T Consensus 55 ~~nPT~~~LE~~la~LE~~-~~a~~~~SGmaAi~~~~~~l--~~~gd~il~~~~~Yg~t~~l~~~~~------------- 118 (421)
T d2ctza1 55 IMNPTVDVLEKRLAALEGG-KAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTL------------- 118 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHH-------------
T ss_pred CCCHHHHHHHHHHHHHhCC-CeEEEecChHHHHHHHHHhh--cccccceeecCCcCCchhHHHHHHH-------------
Confidence 4567788999999998854 56777778999998888655 3578899999988887543322221
Q ss_pred CCCCCCCCcccccCCCC-HHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 110 GVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 110 ~~~~~~~~~~~~~~~~d-~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
...+..+..++..| .+..++.++ ++++++++|++.|+...+.+ +++|+++|+++|+++++|+..+.
T Consensus 119 ---~~~gi~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~--- 185 (421)
T d2ctza1 119 ---KRLGIEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM--- 185 (421)
T ss_dssp ---HHTTCEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG---
T ss_pred ---hhccccceecccccCcchhccccC---CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc---
Confidence 11122233333223 345555555 68999999999999888888 99999999999999999999841
Q ss_pred ccCccccccCCCcch--hhhhhhccC-C-ccceeeeehHHH----------------------HHHhcCC-------CCc
Q 017633 189 AYGGAQEYFGVTPDL--TTLGKIIGG-G-LPVGAYGGRRDI----------------------MEMVAPA-------GPM 235 (368)
Q Consensus 189 g~~~~~~~~~~~~di--~s~sK~~~~-G-~~iG~v~~~~~~----------------------~~~~~~~-------~~~ 235 (368)
.......+....|+ .|.+|.++| + .-.|.++.+.+. .+.+... ...
T Consensus 186 -tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
T d2ctza1 186 -GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG 264 (421)
T ss_dssp -GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTH
T ss_pred -cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHH
Confidence 11223333444454 578899996 4 556666654321 0111000 000
Q ss_pred cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 017633 236 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 281 (368)
Q Consensus 236 ~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 281 (368)
........+|..+..++..++.+ .-..++..+++..+.+.|++.
T Consensus 265 ~~~~G~~~sP~~a~l~~rgl~TL--~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 265 LRDQGQALGPFEAWVVLLGMETL--SLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HHHHCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhccCCCCHHHHHHHhcCCcch--hhHHHHHHHHHHHHHhhhccC
Confidence 01122256788888877777655 334567777777777777653
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.49 E-value=8.9e-14 Score=123.01 Aligned_cols=323 Identities=11% Similarity=-0.020 Sum_probs=171.8
Q ss_pred CceeccCCC----cHHHHHHHHHHHHcCCC---------CCC--CChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHH
Q 017633 2 PQLIILFPS----YLQVLAALGETMKKGTS---------FGA--PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMG 64 (368)
Q Consensus 2 ~~~~~~g~~----~~~v~~a~~~~~~~~~~---------~~~--~~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~ 64 (368)
..+-+|+.+ |++|+++|.+.+.+... |.. ..+...+.++.++++++ +.+.+++++|++++...
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~ 81 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT 81 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence 344556653 67899999887654211 111 12467788899999887 34467777766666665
Q ss_pred HHHHHHHhcCCceEEEEcCCCCCCchhhhhhc-CCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEE
Q 017633 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 143 (368)
Q Consensus 65 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~ 143 (368)
+.... ...+++.+++...+.++......... +............ ..++++++.... ....
T Consensus 82 ~~~~~-~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~----~~~~ 142 (360)
T d1w23a_ 82 MLPMN-LLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--------------YQSIPDFSEFQL----NEND 142 (360)
T ss_dssp HHHHH-HCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--------------SCSCCCGGGCCC----CTTE
T ss_pred HHHhh-hcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--------------ccchhhhhhccc----cccc
Confidence 55433 23566777776655554433322222 1111110000000 002233332222 2223
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehH
Q 017633 144 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRR 223 (368)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~ 223 (368)
..++. .+|...+ +++|.++|+++|+++|+|.+++- .+....++.+ ..|+.+++|.++++-..|+++.++
T Consensus 143 ~~~~~---~tg~~~~----~~~i~~~~~~~g~l~ivDavqs~--g~~~id~~~~--~vd~~~~~~~k~~~~~~~~~~~~~ 211 (360)
T d1w23a_ 143 AYLHI---TSNNTIY----GTQYQNFPEINHAPLIADMSSDI--LSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKD 211 (360)
T ss_dssp EEEEE---ESEETTT----TEECSSCCCCCSSCEEEECTTTT--TSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHH
T ss_pred ceeEe---cCCcccc----ceeeeeccccceeeEEeeccccc--cccccccccc--cceEEeeccccccCCcceeeEech
Confidence 33333 2466677 88999999999999999999961 2223444444 458889999888443455555555
Q ss_pred HHHHHhcCCCCc--------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcC-CceE---E
Q 017633 224 DIMEMVAPAGPM--------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAIC---G 291 (368)
Q Consensus 224 ~~~~~~~~~~~~--------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~---~ 291 (368)
...+........ ...................+....+........++.+.............. .... .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
T d1w23a_ 212 LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEK 291 (360)
T ss_dssp HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCG
T ss_pred hhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCCh
Confidence 443222211110 011222334444444444444343444333344444433333333322221 1111 1
Q ss_pred ee-ccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cccccc--CCCHHHHHHHHHHHHHHHh
Q 017633 292 GY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGFTSL--AHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 292 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~~~~~--~~~~~~i~~~~~~l~~~l~ 366 (368)
.. ....+.|.+ ++..+..++...|.++||.+..|... .+|++. +++.||++++++.+++..+
T Consensus 292 ~~rS~~vvsf~i-------------~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 292 GSRSLMNVTFNL-------------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp GGBCSSEEEEEC-------------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred hhcceeEEEEEc-------------CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 11 112344443 34566788999999999999876322 356554 4499999999999998875
Q ss_pred h
Q 017633 367 Q 367 (368)
Q Consensus 367 ~ 367 (368)
.
T Consensus 359 ~ 359 (360)
T d1w23a_ 359 N 359 (360)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.46 E-value=1.1e-11 Score=107.25 Aligned_cols=311 Identities=13% Similarity=0.081 Sum_probs=184.8
Q ss_pred CcHHHHHHHHHHHHc-C------CCCCCCChhHHHH----HHHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKK-G------TSFGAPCLLENVL----AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~------~~~~~~~~~~~~l----~~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
-+|.|++++...+.+ . ..|+...+...++ .++..++|+-...-+-..||+.|+..++..+ ..++|.|
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~al--l~pGD~i 112 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTV--LEHGDTV 112 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHh--cCCCCEE
Confidence 467788888776654 1 1133333333333 2444455653333344558999999888666 4688999
Q ss_pred EEEcCCCCCCchhhhhh--cCCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 79 IKFEGCYHGHADPFLVK--AGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
+..+....|+....... .+.......+ ....... |.+++++.+.++ +++++++-... ..
T Consensus 113 m~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~I-------------D~d~l~~~a~~~--kPklIi~G~S~--y~ 175 (405)
T d1kl1a_ 113 LGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVI-------------DYDDVREKARLH--RPKLIVAAASA--YP 175 (405)
T ss_dssp EEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSB-------------CHHHHHHHHHHH--CCSEEEECCSS--CC
T ss_pred EEeecccccccccCccccccceEEEEEEeccchhcccc-------------cHHHHHHHHHhh--CcceEEecccc--cc
Confidence 99987777765432111 1111111111 1111111 899999999975 67777775544 22
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeeehHHHHHHhc
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVA 230 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~~~~~~~~~~ 230 (368)
...+ +++++++|++.|.+|+.|-+| +|+ -.|.. -+.+.. .|++|.| |+|. |.|.|.++.++++.+.+.
T Consensus 176 r~~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~~--~~P~~~-aDvvt~tThKtlr-GPrgg~I~~~~~~~~~i~ 247 (405)
T d1kl1a_ 176 RIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPVPY-AHFVTTTTHKTLR-GPRGGMILCQEQFAKQID 247 (405)
T ss_dssp SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCSTTT-CSEEEEESSSTTC-CCSCEEEEECHHHHHHHH
T ss_pred cccC----hHHHHHHHhhhCCEEecchhhHhhhhhhhhc--CChhhh-hhheecccccccc-CCCCceEEecchhHHHHH
Confidence 3345 999999999999999999999 777 43322 122232 4777666 8886 558999999988877776
Q ss_pred CCC-CccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEeecC
Q 017633 231 PAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEG 305 (368)
Q Consensus 231 ~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 305 (368)
..- +..++ ++.....++...++....+ ..+.+.+.++++.+.+.|.+. ++..... ...+++++++...
T Consensus 248 ~avfPg~qg---gp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~----G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 248 KAIFPGIQG---GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHTTTTCS---SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGG
T ss_pred hhhCccccc---CcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC----CceeecCCCccceeecccccc
Confidence 311 12222 2233344444444443322 345667777777777777663 4322111 2345778877532
Q ss_pred CCcccchhcccccHHHHHHHHHHHHcCeeecCCC------CC----cccc------ccCCCHHHHHHHHHHHHHHHh
Q 017633 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FE----AGFT------SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~----~~~~------~~~~~~~~i~~~~~~l~~~l~ 366 (368)
. ....+..+.|.+.||.+.-.. .+ .+|+ ...+.++|+.++.+.|.+++.
T Consensus 321 ~------------~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 321 Q------------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp T------------CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred C------------CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 1 223555666777799886321 11 1232 356789999999999988874
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=5.2e-12 Score=109.85 Aligned_cols=311 Identities=14% Similarity=0.087 Sum_probs=182.2
Q ss_pred CcHHHHHHHHHHHHc-C------CCCCCCChh---HHHHH-HHHHhhCCCCCeEEEeCChHHHHHHHHHHHHHhcCCceE
Q 017633 10 SYLQVLAALGETMKK-G------TSFGAPCLL---ENVLA-EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 78 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~-~------~~~~~~~~~---~~~l~-~~l~~~~~~~~~v~~~~~gt~a~~~al~~~~~~~~~~~v 78 (368)
-+|.|++++...+.+ . ..|+..++. .+.|+ ++..++|+-...-+-..||+.|+..++... ..++|.|
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~Al--l~pGD~I 115 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LEPGDTV 115 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHh--cCCCCee
Confidence 467777777766654 1 113333333 33333 333445553223333568999999998766 4688999
Q ss_pred EEEcCCCCCCchhhhhhc--CCCccccCCC-CCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 79 IKFEGCYHGHADPFLVKA--GSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 79 i~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
+..+....|+........ +.......++ ..++.. |.+++++.+.+. +++++++-. +....
T Consensus 116 l~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~I-------------Dyd~l~~~a~~~--kPklIi~G~--S~y~r 178 (416)
T d1dfoa_ 116 LGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHI-------------DYADLEKQAKEH--KPKMIIGGF--SAYSG 178 (416)
T ss_dssp EEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSB-------------CHHHHHHHHHHH--CCSEEEEEC--SSCCS
T ss_pred eeccccccccccccccccccCceEEEEecccCCccCc-------------cHHHHHHHHHHh--ccceEEecc--ccccc
Confidence 999887777654332211 1111111111 011112 899999999875 677777643 33444
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhh--hhhccCCccceeeeeh---HHHHHH
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR---RDIMEM 228 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~--sK~~~~G~~iG~v~~~---~~~~~~ 228 (368)
..+ +++++++|++.|.+|++|.+| +|+ ..|.. -+.+.. .|+++. .|+|. |.|.|.++.+ +++.+.
T Consensus 179 ~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~~--~sP~~~-aDvvt~tThKtlr-GPrggiI~~~~~~~~~~~~ 250 (416)
T d1dfoa_ 179 VVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGVY--PNPVPH-AHVVTTTTHKTLA-GPRGGLILAKGGSEELYKK 250 (416)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCCTTT-SSEEEEESSSTTC-CCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHhcCceEEcchhhhhcceecccc--CCcccc-cceeeeehhhccc-CCCceEEEeccchHhHHHH
Confidence 566 999999999999999999999 777 33322 122333 377654 48886 4588888875 566666
Q ss_pred hcCC-CCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eccceEEEEee
Q 017633 229 VAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFT 303 (368)
Q Consensus 229 ~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (368)
+... -+..+++ +.....++...++....+ .++.+.+.++++.+.+.|.+. ++..... ...+++++++.
T Consensus 251 i~~avfPg~qgg---p~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~----G~~iv~ggTdnHlvlvdl~ 323 (416)
T d1dfoa_ 251 LNSAVFPGGQGG---PLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER----GYKVVSGGTDNHLFLVDLV 323 (416)
T ss_dssp HHHHHTTTTCSS---CCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG
T ss_pred HHhhhCcccccC---ccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC----CcccccCCCCCceeEEEec
Confidence 6521 1222222 223344444445554333 345667777777777777664 4322211 23357777775
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCC------C----cccc------ccCCCHHHHHHHHHHHHHHHh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------E----AGFT------SLAHSSDDIQHTITAAEKVLR 366 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~------~----~~~~------~~~~~~~~i~~~~~~l~~~l~ 366 (368)
+. ...+.+..+.|.+.||.+--..- + .+|+ ...+.++|++++.+.|.+++.
T Consensus 324 ~~------------~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~ 390 (416)
T d1dfoa_ 324 DK------------NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD 390 (416)
T ss_dssp GG------------TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cc------------CCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 32 22246677777788998753211 1 1232 356788999999888888874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.5e-13 Score=121.42 Aligned_cols=317 Identities=9% Similarity=-0.072 Sum_probs=165.4
Q ss_pred CcHHHHHHHHHHHHcCC---------CCCCC--ChhHHHHHHHHHhhCC--CCCeEEEeCChHHHHHHHHHHHHHhcCCc
Q 017633 10 SYLQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE 76 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~~---------~~~~~--~~~~~~l~~~l~~~~~--~~~~v~~~~~gt~a~~~al~~~~~~~~~~ 76 (368)
-+|+|+++|.+.+.+.. .+..+ .+...+.++.+++.++ +.+.+++++|++++...++... ...+++
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~-~~~~~~ 90 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN-ILGDKT 90 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCTTCC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc-cccccc
Confidence 35789999988775421 11111 2467788999999987 3457888877777777665433 234666
Q ss_pred eEEEEcCCCCCCchhhhhhcCCC-ccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCc
Q 017633 77 RIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 155 (368)
Q Consensus 77 ~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~ 155 (368)
.+++....+.+.....+...... ......+ .... .+.+.++..+. .+++++++...++.+|.
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~---~~~~~v~v~~~~~~t~~ 153 (360)
T d1bjna_ 91 TADYVDAGYWAASAIKEAKKYCTPNVFDAKV-TVDG-------------LRAVKPMREWQ---LSDNAAYMHYCPNETID 153 (360)
T ss_dssp EEEEEESSHHHHHHHHHHTTTSEEEEEECEE-EETT-------------EEEECCGGGCC---CCSSCSCEEECSEETTT
T ss_pred ccceecccchhhhhHHHHhhcCccceeeccc-cCCC-------------cchhhhhhhhc---cCCceeEEEeccccccc
Confidence 67776655544332222221111 1000000 0000 02223333333 23333333333333444
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcchhhhhhhccCCccceeeeehHHHHHHhcCCCCc
Q 017633 156 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 235 (368)
Q Consensus 156 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~G~~iG~v~~~~~~~~~~~~~~~~ 235 (368)
..+ ++++ .++.+++++++|.+++ .+ ...++.++.+.++.+.+|.++++...+.++.++...+........
T Consensus 154 ~~~----~~~i--~~~~~~~~v~vDa~~~---~~-~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T d1bjna_ 154 GIA----IDET--PDFGADVVVAADFSST---IL-SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSI 223 (360)
T ss_dssp TEE----CCCC--CCCCTTCCEEEECTTT---TT-SSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGG
T ss_pred Ccc----ccce--ecccccceeeeeeecc---cc-ceeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcc
Confidence 444 3333 4577899999997775 11 223455666777888999998655566666655433222211110
Q ss_pred --------cccccCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCce----EEeeccceEEEEee
Q 017633 236 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI----CGGYISGMFGFFFT 303 (368)
Q Consensus 236 --------~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ 303 (368)
...............+.........+...+...++.+.....+.+.....+... ........+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~- 302 (360)
T d1bjna_ 224 LDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQL- 302 (360)
T ss_dssp GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEE-
T ss_pred hhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEc-
Confidence 011222334444444443333332344444444444444444444333322111 1111223444544
Q ss_pred cCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC--cccc--ccCCCHHHHHHHHHHHHHHHhh
Q 017633 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE--AGFT--SLAHSSDDIQHTITAAEKVLRQ 367 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~--~~~~--~~~~~~~~i~~~~~~l~~~l~~ 367 (368)
++..+.+++.+.|.++||.+..|... .+|+ ..++++||++++++.|++..++
T Consensus 303 ------------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 303 ------------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp ------------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 34455688999999999999876322 2554 4567999999999999987643
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.26 E-value=1.1e-09 Score=96.55 Aligned_cols=310 Identities=17% Similarity=0.115 Sum_probs=176.7
Q ss_pred CcHHHHHHHHHHHHcC-------CCCCCCChhHHHH----HHHHHhhCC-CC---CeEEEeCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKG-------TSFGAPCLLENVL----AEMVISAVP-SI---EMVRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~l----~~~l~~~~~-~~---~~v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|.|++++...+.+- ..|+...+...++ .++..++|+ +. ..-+-..||+.|+..++..+ ..+
T Consensus 43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~al--l~p 120 (470)
T d1rv3a_ 43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL--VEP 120 (470)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--TCT
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHh--cCC
Confidence 4667777776665441 1233334433333 344456665 21 23455668999999998765 467
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCc-------cccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGV-------ATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 145 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~ 145 (368)
+|.|+..+..-.|+..........++ ....+ ....+.. |.+++++...+. ++++++
T Consensus 121 gD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~I-------------Dyd~l~~~a~~~--kPklIi 185 (470)
T d1rv3a_ 121 HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI-------------DYDRLEENARLF--HPKLII 185 (470)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB-------------CHHHHHHHHHHH--CCSEEE
T ss_pred CCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcc-------------cHHHHHHHHHhh--CcceEe
Confidence 89999987766666443322111111 00011 1111111 899999999865 677777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeee
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 221 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~ 221 (368)
+-... .-...+ +++++++|++.|.+|+.|-+| +|+ -.|.. -+.+.. .|++|.| |+|. |.|.|.++.
T Consensus 186 ~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~~--~sPl~~-aDvvt~tTHKtlr-GPrgGiI~~ 255 (470)
T d1rv3a_ 186 AGTSC--YSRNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPFEH-CHVVTTTTHKTLR-GCRAGMIFY 255 (470)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGGGT-CSEEEEESSGGGC-CCSCEEEEE
T ss_pred echhh--ccccCC----HHHHHHHHhccCCeEEecchhhhhhcccccc--CChhhe-eeeeeeehhhhcc-CCcceEEEE
Confidence 75443 223455 999999999999999999999 777 44332 112222 2777655 8885 558888877
Q ss_pred hHH---------------HHHHhcCCC-CccccccCCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHHHHH
Q 017633 222 RRD---------------IMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 222 ~~~---------------~~~~~~~~~-~~~~~~t~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~ 282 (368)
+++ +.+.+...- +..++ ++.....++...++....++ .+.+.+.++++.+.+.|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qg---gph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~-- 330 (470)
T d1rv3a_ 256 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQG---GPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-- 330 (470)
T ss_dssp ECSBCC-------CCBCCHHHHHHHHHTTTTCC---SCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccccccccccccchhHHHHHHHHhhhcCccccc---cchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--
Confidence 642 444444200 11121 22334444444455544332 3455566666666666655
Q ss_pred HhcCCceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCC---CC-c-----ccc------c
Q 017633 283 KKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FE-A-----GFT------S 346 (368)
Q Consensus 283 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~-~-----~~~------~ 346 (368)
.++..... ...+++++++... ..+..+..+.|.+.||.+--.. ++ . +|+ +
T Consensus 331 --~G~~v~~ggTdnHlvlvdl~~~------------g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTt 396 (470)
T d1rv3a_ 331 --LGYKIVTGGSDNHLILVDLRSK------------GTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTS 396 (470)
T ss_dssp --TTCEEGGGSCSSSEEEEEGGGG------------TCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHH
T ss_pred --CCceeccCCCCCceEEEeeccc------------CCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHh
Confidence 44332211 2234667776432 1224566777778899885321 11 1 232 3
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 017633 347 LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l~~~l 365 (368)
..+.++|+.++.+.|.+++
T Consensus 397 rG~~e~dm~~iA~~I~~~l 415 (470)
T d1rv3a_ 397 RGLLEKDFQKVAHFIHRGI 415 (470)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 6778899988888888776
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.21 E-value=1.6e-09 Score=95.24 Aligned_cols=310 Identities=16% Similarity=0.084 Sum_probs=167.8
Q ss_pred CcHHHHHHHHHHHHcC-------CCCC----CCChhHHHHHHHHHhhCC-CCC-e--EEEeCChHHHHHHHHHHHHHhcC
Q 017633 10 SYLQVLAALGETMKKG-------TSFG----APCLLENVLAEMVISAVP-SIE-M--VRFVNSGTEACMGVLRLARAFTG 74 (368)
Q Consensus 10 ~~~~v~~a~~~~~~~~-------~~~~----~~~~~~~~l~~~l~~~~~-~~~-~--v~~~~~gt~a~~~al~~~~~~~~ 74 (368)
.+|.|++++...+.+- ..|+ +.++.+.-..++..++|+ ... + -+-..||+.|+..++..+ ..+
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al--l~p 116 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 116 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH--cCC
Confidence 4667777776665441 1121 123444444555666676 333 1 345568999998888666 467
Q ss_pred CceEEEEcCCCCCCchhhhhhc-------CCCccccCC--CCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEE
Q 017633 75 RERIIKFEGCYHGHADPFLVKA-------GSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 145 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~ 145 (368)
+|.|+..+....|+........ +.-.....| ...++.. |.+++++.+.+. ++++++
T Consensus 117 gD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~I-------------Dyd~~~~~a~~~--kPklIi 181 (463)
T d2a7va1 117 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI-------------DYNQLALTARLF--RPRLII 181 (463)
T ss_dssp CEECCC-------------------------------CCBCTTTCSB-------------CHHHHHHHHHHH--CCSEEE
T ss_pred CceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcC-------------cHHHHHHHHhhc--CCceEE
Confidence 8899988766656543321111 110011111 0011111 899999999875 677777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhh-hch-hcccCccccccCCCcchhhhh--hhccCCccceeeee
Q 017633 146 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 221 (368)
Q Consensus 146 ~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~-~~~-~~g~~~~~~~~~~~~di~s~s--K~~~~G~~iG~v~~ 221 (368)
+-... .-...+ +++++++|++.|.+|+.|-+| +|+ -.|.. -+.+.. .|+++.| |+|. |.|.|.++.
T Consensus 182 ~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~~--~sP~~~-aDvvt~tTHKTlr-GPrgGiIl~ 251 (463)
T d2a7va1 182 AGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVI--PSPFKH-ADIVTTTTHKTLR-GARSGLIFY 251 (463)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSS--CCGGGT-CSEEEEESSGGGC-SCSCEEEEE
T ss_pred ecccc--cccccC----HHHHHHHhhcccceEEechhhhhHHhhhhhh--cChhhh-hhhhhchhhhhhc-CCCceEEEE
Confidence 75443 223455 999999999999999999999 777 43322 112233 3777655 8886 558888887
Q ss_pred hH---------------HHHHHhcCC-CCccccccCCCCHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHH
Q 017633 222 RR---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 282 (368)
Q Consensus 222 ~~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 282 (368)
++ ++.+.+... =+..++ ++.....++...++....+ .++.+.+.++++.+.+.|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qg---gph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~- 327 (463)
T d2a7va1 252 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQG---GPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER- 327 (463)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCC---SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccccccccccCccchhHHHHHhhhhcCcccch---hhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-
Confidence 65 333333310 012222 2233334443344443333 345666777777777776663
Q ss_pred HhcCCceEEe-eccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC----c-----ccc------c
Q 017633 283 KKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE----A-----GFT------S 346 (368)
Q Consensus 283 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~----~-----~~~------~ 346 (368)
++..... ...+++++++.+.. .+..+..+.|.+.||.+.-..-| . +|+ .
T Consensus 328 ---G~~vv~ggTdnHlvlvdl~~~~------------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~Tt 392 (463)
T d2a7va1 328 ---GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTS 392 (463)
T ss_dssp ---TCEEGGGSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred ---CCeeecCCCCCceeeeeccccC------------CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHh
Confidence 4332211 22346677765321 23466777888889888643211 1 232 3
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 017633 347 LAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 347 ~~~~~~~i~~~~~~l~~~l 365 (368)
..+.++|+.++.+.|.+++
T Consensus 393 rG~~e~dm~~iA~~I~~~l 411 (463)
T d2a7va1 393 RQFREDDFRRVVDFIDEGV 411 (463)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5678899988888887766
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=3.7e-08 Score=88.21 Aligned_cols=318 Identities=17% Similarity=0.162 Sum_probs=168.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCC---C----hhHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhc------C
Q 017633 9 PSYLQVLAALGETMKKGTSFGAP---C----LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------G 74 (368)
Q Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~---~----~~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~------~ 74 (368)
|-+|.+.+.+.+.+..++-|. | + +..-++...++++.+ +-...- ...|.+|...|+.+++.+. .
T Consensus 76 hy~P~v~~~~~~~~TaYTPYQ-PaEiSQG~LQalfEfQtmi~eLTGMdvaNaS-~yDGatA~aeA~~ma~r~~~~~~~~~ 153 (471)
T d1wyub1 76 KYNPKLHEEAARLFADLHPYQ-DPRTAQGALRLMWELGEYLKALTGMDAITLE-PAAGAHGELTGILIIRAYHEDRGEGR 153 (471)
T ss_dssp CCCCHHHHHHHHTTSSCCTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCcchhhhHHHHHhccCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCccccc-cchHHHHHHHHHHHHHHHhhhccccc
Confidence 567888888876433322232 2 1 234466777788775 322222 2457677666665554431 1
Q ss_pred CceEEEEcCCCCCCchhhhhhcCCCccccCCCCCCCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCC
Q 017633 75 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 154 (368)
Q Consensus 75 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g 154 (368)
...+++..+.++..........+.......... .+. .+.+.++.... ++++++++..+++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~---~~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 154 TRRVVLVPDSAHGSNPATASMAGYQVREIPSGP-EGE-------------VDLEALKRELG---PHVAALMLTNPNTLGL 216 (471)
T ss_dssp TCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-TSS-------------BCHHHHHHHCS---TTEEEEEECSSCTTSC
T ss_pred ccccccCCcccccceeeeeecccceeecccccc-ccc-------------ccchhhhhhhh---ccccceeeccCCCccc
Confidence 233455565566544443333333222111111 111 16677666554 5677777765555443
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEehhhhchhcccCccccccCCCcch-hhhhhhc----c-CCccceeeeehHHHHHH
Q 017633 155 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL-TTLGKII----G-GGLPVGAYGGRRDIMEM 228 (368)
Q Consensus 155 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~di-~s~sK~~----~-~G~~iG~v~~~~~~~~~ 228 (368)
.... .+++.+++++++..+++|-+......+ .......+. .++ +-.++.| + ||..+|++.+++++.+.
T Consensus 217 ~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~-l~~p~~~g~-div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~ 290 (471)
T d1wyub1 217 FERR----ILEISRLCKEAGVQLYYDGANLNAIMG-WARPGDMGF-DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPY 290 (471)
T ss_dssp CCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTT-TCCHHHHTC-SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGG
T ss_pred ccch----hhhhHHHHHhccccccccccchhhhhh-ccccCcccc-cccccccccccccccccccccccceeehhhhhcc
Confidence 3333 789999999999988888554211000 111111111 122 2233444 4 55778999999988887
Q ss_pred hcCCC-------------C---ccccccCCCCHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHhcCCce
Q 017633 229 VAPAG-------------P---MYQAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHAI 289 (368)
Q Consensus 229 ~~~~~-------------~---~~~~~t~~~~~~~~~a~~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~ 289 (368)
+..+- + .......+.+.+.+.++...+..+..++ +.+....++.+++++|+.. ++..
T Consensus 291 ~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~----G~~~ 366 (471)
T d1wyub1 291 LPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK----GYRV 366 (471)
T ss_dssp CCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBC
T ss_pred CCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhc----Ccee
Confidence 75210 0 0111122333444444444555555544 4566778888888887552 2221
Q ss_pred EEeeccceEEEEeecCCCcccchhcccccHHHHHHHHHHHHcCeeecCCCCC-----c--cccccCCCHHHHHHHHHHHH
Q 017633 290 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-----A--GFTSLAHSSDDIQHTITAAE 362 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~--~~~~~~~~~~~i~~~~~~l~ 362 (368)
. ....++.-|.+.. +.+....++.+.|+++|++-.....+ . +++.-..|++|||+++++|+
T Consensus 367 ~-~~~~ff~EFvv~~-----------~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~ 434 (471)
T d1wyub1 367 P-YDGPSMHEFVAQP-----------PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMG 434 (471)
T ss_dssp S-SCSSCCSCEEEBC-----------STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHH
T ss_pred c-cCcceeeEEeecC-----------CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 1 1112222222221 12233578999999999865322222 1 23344569999999999999
Q ss_pred HHHhh
Q 017633 363 KVLRQ 367 (368)
Q Consensus 363 ~~l~~ 367 (368)
+++++
T Consensus 435 ~i~~e 439 (471)
T d1wyub1 435 ALLKK 439 (471)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 99875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=1.2e-09 Score=96.87 Aligned_cols=282 Identities=16% Similarity=0.136 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhhCC-CCCeEEEeCChHHHHHHHHHHHHHhcCCceEEEEcCCCCCCchhhh----hhcCCCccccCCCCC
Q 017633 34 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL----VKAGSGVATLGLPDS 108 (368)
Q Consensus 34 ~~~~l~~~l~~~~~-~~~~v~~~~~gt~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 108 (368)
...++.+.++++.+ +.. -.-..+|.+|...++.+++.+.+++++++... .|....... ...|.++.
T Consensus 109 ~l~e~q~~l~eltGmd~~-n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~-~~p~~~~v~~t~a~~~g~~vv------- 179 (437)
T d1wyua1 109 ATFEYQTMIAELAGLEIA-NASMYDGATALAEGVLLALRETGRMGVLVSQG-VHPEYRAVLRAYLEAVGAKLL------- 179 (437)
T ss_dssp HHHHHHHHHHHHHTSSEE-CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETT-SCHHHHHHHHHHHHHTTCEEE-------
T ss_pred HHHHHHHHHHHhhCCCcc-ccCchHHHHHHHHHHHHHHhhhcccccccccc-cChHHhhhhhhhcccceeeEE-------
Confidence 45588888888876 321 22234677887778877777778888877543 443332221 12233222
Q ss_pred CCCCCCCCCcccccCCCCHHHHHHHHHcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEehhhhchhc
Q 017633 109 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 188 (368)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~le~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~ 188 (368)
.++.++... ...+..++++++++..+ ++.|.+.+ ++++.+++++.|.++++|-.-..+
T Consensus 180 ------------~v~~~~~~~---~~~~~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al-- 237 (437)
T d1wyua1 180 ------------TLPLEGGRT---PLPEVGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSL-- 237 (437)
T ss_dssp ------------EECCBTTBC---CCCCCCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGG--
T ss_pred ------------eeecccccc---hhhhhccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhh--
Confidence 222111000 00011257777766444 44576655 899999999999988877433211
Q ss_pred ccCccccccCCCcchh-----hhhhhcc-CCccceeeeehHHHHHHhcCCCCc--------------------------c
Q 017633 189 AYGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPM--------------------------Y 236 (368)
Q Consensus 189 g~~~~~~~~~~~~di~-----s~sK~~~-~G~~iG~v~~~~~~~~~~~~~~~~--------------------------~ 236 (368)
+.......+|. |++ +|+=.++ ||-..|++.+++++.+.+..+-.. .
T Consensus 238 ~~l~~Pg~~Ga--Di~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrReka 315 (437)
T d1wyua1 238 GVLKPPGAYGA--DIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKA 315 (437)
T ss_dssp GTBCCHHHHTC--SEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGS
T ss_pred hcccccccccc--ceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccccccccccccc
Confidence 11112223444 543 3333333 456788999998887776531100 0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHhcCCceEEeeccceEEEEeecCCCcccchh
Q 017633 237 QAGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313 (368)
Q Consensus 237 ~~~t~~~~~~~~~a~~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
.++..+...+.+..+...+..+..+++ .++...++.++.++|.+ .+..........+--+.+..
T Consensus 316 tsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~----~~g~~~~~~~~~f~ef~v~~--------- 382 (437)
T d1wyua1 316 KSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLE----VPGVRPFTPKPFFNEFALAL--------- 382 (437)
T ss_dssp SCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STTCEECSCSSBCSEEEEEC---------
T ss_pred ccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhh----cCCeeccCCCCeeeEEEEEC---------
Confidence 011122333333333334444544443 33444555555555544 32211121222232333321
Q ss_pred cccccHHHHHHHHHHHHcCeeecCCCCC-----c--cccccCCCHHHHHHHHHHHHHHH
Q 017633 314 KKSETTKFARFYRGMLEEGVYFAPSQFE-----A--GFTSLAHSSDDIQHTITAAEKVL 365 (368)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~Gi~~~~~~~~-----~--~~~~~~~~~~~i~~~~~~l~~~l 365 (368)
+.+..+++++|+++|+.......+ . +.+.-..|++||++++++|++++
T Consensus 383 ----~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 383 ----PKDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp ----SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 123578999999999975432111 1 23344568999999999999874
|