Citrus Sinensis ID: 017645

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQIEAADDSNSC
cccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHcHHHccccHHHHHHHHHHcccccccccccccHHcHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHccccEEEEEEccccccHHcccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccc
ccHHHccccHHHHccccccccHHHcccccccHHHcHHHHHcccccccccEEEEEccccccccccHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHHccEEEEcccHcHHHHHHHccccccEEEHccccHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHccccEEccccHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccc
mrlvqrlplMANSLAttglsktswqsrpllsfLRTQTLLNSLSLYPKINYLLLCscsqsqtspdfsnlileqsskrgplepglylvatpignleDITLRALRVLKSANVilsedtrhsgkllqyyniktpllsyhkfneSQREQTVLNRLKQGEIVALIsdagtpgisdpgtELAKLcvdekipvvpipgASAFVAALSasglatdeftfvgflpkharSRTERLMLSANEVKtqifyvpphkllqFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAkeafsshqpkgeitVLVEGKAicvvetpsedQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKqieaaddsnsc
mrlvqrlpLMANSLAttglsktswqsrpLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVilsedtrhsgkllQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISdagtpgisDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAlrkfgkqieaaddsnsc
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYlllcscsqsqTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQIEAADDSNSC
*****************GLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCS**********************EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAF*****KGEITVLVEGKAICVVETP******KELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFG************
*******PLMANSLATTGLSK*****R**LSFLRTQTLLNSLSLYPKINY*********************************YLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA***********LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSL******************
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQI*********
*RLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCS*****PDFSN*I*******GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF*************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQIEAADDSNSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
P74038279 Ribosomal RNA small subun N/A no 0.733 0.967 0.477 7e-67
Q9KGL2289 Ribosomal RNA small subun yes no 0.752 0.958 0.428 3e-54
Q9CN04281 Ribosomal RNA small subun yes no 0.730 0.957 0.415 3e-53
P45298283 Ribosomal RNA small subun yes no 0.744 0.968 0.418 2e-52
Q9HVZ3282 Ribosomal RNA small subun yes no 0.595 0.776 0.488 7e-51
Q9KUD9288 Ribosomal RNA small subun yes no 0.739 0.944 0.414 2e-50
P67087286 Ribosomal RNA small subun N/A no 0.625 0.804 0.439 6e-49
P67088286 Ribosomal RNA small subun N/A no 0.625 0.804 0.439 6e-49
Q87B70273 Ribosomal RNA small subun yes no 0.720 0.970 0.413 8e-49
Q9PFV5273 Ribosomal RNA small subun yes no 0.720 0.970 0.409 2e-48
>sp|P74038|RSMI_SYNY3 Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1 Back     alignment and function desciption
 Score =  254 bits (649), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 129/270 (47%), Positives = 174/270 (64%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLVATPIGNL D+T RA+  L++ ++I +EDTRH+GKLLQ++ I TP +SYH  N   R
Sbjct: 4   LYLVATPIGNLGDMTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISYHDHNRHGR 63

Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
            Q +L +L+ G+ +AL+SDAGTPGISDPG EL   C +  I V+PIPGA+A +AAL +SG
Sbjct: 64  TQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATALIAALISSG 123

Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           LATD F F GFL    R R + L   A E +T I Y  PH+LL  L +     G  R   
Sbjct: 124 LATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQERSLT 183

Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
           +ARE+TK HE+FWRGTL  A   F+ + PKGE  +++ G       + SE+ L  ELR L
Sbjct: 184 VARELTKYHEQFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEENLRDELRSL 243

Query: 323 ISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
           ++ G   S A + +A+ T + R+ +Y L+L
Sbjct: 244 MAKGLTRSQASRQLAEETKLPRRQLYQLSL 273
Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 8
>sp|Q9KGL2|RSMI_BACHD Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9CN04|RSMI_PASMU Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain Pm70) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|P45298|RSMI_HAEIN Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9HVZ3|RSMI_PSEAE Ribosomal RNA small subunit methyltransferase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9KUD9|RSMI_VIBCH Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|P67087|RSMI_ECOLI Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli (strain K12) GN=rsmI PE=1 SV=1 Back     alignment and function description
>sp|P67088|RSMI_ECO57 Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli O157:H7 GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q87B70|RSMI_XYLFT Ribosomal RNA small subunit methyltransferase I OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rsmI PE=3 SV=1 Back     alignment and function description
>sp|Q9PFV5|RSMI_XYLFA Ribosomal RNA small subunit methyltransferase I OS=Xylella fastidiosa (strain 9a5c) GN=rsmI PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
255538768363 uroporphyrin-III methyltransferase, puta 0.970 0.983 0.727 1e-148
302142558374 unnamed protein product [Vitis vinifera] 0.964 0.949 0.713 1e-142
225458161351 PREDICTED: ribosomal RNA small subunit m 0.945 0.991 0.719 1e-141
449469947365 PREDICTED: ribosomal RNA small subunit m 0.972 0.980 0.702 1e-135
30693914343 tetrapyrrole (corrin/porphyrin)methylase 0.899 0.965 0.684 1e-130
297846856342 tetrapyrrole methylase family protein [A 0.831 0.894 0.732 1e-129
363814508352 uncharacterized protein LOC100819709 [Gl 0.782 0.818 0.763 1e-123
7767663366 F27F5.18 [Arabidopsis thaliana] 0.883 0.887 0.616 1e-120
242034467336 hypothetical protein SORBIDRAFT_01g02206 0.885 0.970 0.651 1e-114
357146231334 PREDICTED: ribosomal RNA small subunit m 0.793 0.874 0.722 1e-113
>gi|255538768|ref|XP_002510449.1| uroporphyrin-III methyltransferase, putative [Ricinus communis] gi|223551150|gb|EEF52636.1| uroporphyrin-III methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/367 (72%), Positives = 305/367 (83%), Gaps = 10/367 (2%)

Query: 3   LVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQT---LLNSLSLYPKINYLLLCSCSQS 59
           L++RLP ++ +L     +  SW+  P  +F RT+     L S+S +PKI  L  C  +Q 
Sbjct: 4   LLRRLPPVSITLT----AALSWRQLPS-NFFRTELDLLSLKSISAHPKIPTLSFCFTTQ- 57

Query: 60  QTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG 119
             SPDF+NLILE SSKRG L+PGLYLV TPIGNLEDITLRALRVLKSA VIL+EDTRHSG
Sbjct: 58  -VSPDFTNLILEDSSKRGALKPGLYLVGTPIGNLEDITLRALRVLKSAQVILAEDTRHSG 116

Query: 120 KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179
           KLL YYNI TPLLSYHKFNESQRE  VL RLKQGEIVALISDAG PGISDPG +LAKLCV
Sbjct: 117 KLLHYYNITTPLLSYHKFNESQRECLVLKRLKQGEIVALISDAGMPGISDPGAQLAKLCV 176

Query: 180 DEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239
           DE IPV+PIPG SA VAA+SASGL+TDEFTFVGFL KHARSR ERL+ SA+E +TQIFYV
Sbjct: 177 DENIPVIPIPGPSAVVAAISASGLSTDEFTFVGFLSKHARSRRERLIASADETRTQIFYV 236

Query: 240 PPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299
           PPHKL +FL+ETS LFG SRRCVIARE+TK+HEEFWRGTLGEAKEAF+ HQPKGEIT+L+
Sbjct: 237 PPHKLSRFLDETSTLFGDSRRCVIAREMTKIHEEFWRGTLGEAKEAFADHQPKGEITLLI 296

Query: 300 EGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQI 359
           EGK  C+VETPSE QLE +L  LIS GH+LSMAVKLVA+GTS++RKT+YSLALRKFGKQ+
Sbjct: 297 EGKINCLVETPSESQLEHDLGDLISNGHSLSMAVKLVAEGTSMKRKTLYSLALRKFGKQV 356

Query: 360 EAADDSN 366
           E  D S+
Sbjct: 357 EVEDKSD 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142558|emb|CBI19761.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458161|ref|XP_002281008.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449469947|ref|XP_004152680.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Cucumis sativus] gi|449515758|ref|XP_004164915.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30693914|ref|NP_175126.2| tetrapyrrole (corrin/porphyrin)methylase [Arabidopsis thaliana] gi|34365739|gb|AAQ65181.1| At1g45110 [Arabidopsis thaliana] gi|110738768|dbj|BAF01308.1| hypothetical protein [Arabidopsis thaliana] gi|332193960|gb|AEE32081.1| tetrapyrrole (corrin/porphyrin)methylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846856|ref|XP_002891309.1| tetrapyrrole methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337151|gb|EFH67568.1| tetrapyrrole methylase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363814508|ref|NP_001242889.1| uncharacterized protein LOC100819709 [Glycine max] gi|255635241|gb|ACU17975.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|7767663|gb|AAF69160.1|AC007915_12 F27F5.18 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242034467|ref|XP_002464628.1| hypothetical protein SORBIDRAFT_01g022060 [Sorghum bicolor] gi|241918482|gb|EER91626.1| hypothetical protein SORBIDRAFT_01g022060 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357146231|ref|XP_003573919.1| PREDICTED: ribosomal RNA small subunit methyltransferase I-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2028215343 AT1G45110 [Arabidopsis thalian 0.904 0.970 0.682 6.9e-118
UNIPROTKB|Q3AG07269 rsmI "Ribosomal RNA small subu 0.717 0.981 0.468 1.9e-58
TIGR_CMR|CHY_0055269 CHY_0055 "conserved hypothetic 0.717 0.981 0.468 1.9e-58
UNIPROTKB|Q820W0285 rsmI "Ribosomal RNA small subu 0.725 0.936 0.466 5.5e-54
TIGR_CMR|CBU_1739285 CBU_1739 "tetrapyrrole (Corrin 0.725 0.936 0.466 5.5e-54
UNIPROTKB|Q74FF6286 rsmI "Ribosomal RNA small subu 0.733 0.944 0.454 8.9e-54
TIGR_CMR|GSU_0653286 GSU_0653 "tetrapyrrole methyla 0.733 0.944 0.454 8.9e-54
UNIPROTKB|Q48EE8332 rsmI "Ribosomal RNA small subu 0.725 0.804 0.448 1.3e-52
TIGR_CMR|DET_0386274 DET_0386 "tetrapyrrole methyla 0.725 0.974 0.435 9.5e-50
UNIPROTKB|Q4K6I3290 yraL "Ribosomal RNA small subu 0.760 0.965 0.427 5.2e-49
TAIR|locus:2028215 AT1G45110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 230/337 (68%), Positives = 271/337 (80%)

Query:    31 SFLRTQTLLNSLSLYPKINYXXXXXXXXXXTSPDFSNLILEQSSKRGPLEPGLYLVATPI 90
             SFLRT TL    S+  +             +S +F++ + +  SKRGPL+PGLYLV TPI
Sbjct:     9 SFLRTSTL----SILFRSPILSTTAAISFCSSSEFADSVAKDDSKRGPLKPGLYLVGTPI 64

Query:    91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRL 150
             GNLEDITLRA+RVL+SA+VILSEDTRHSGKLLQYYNIK  LLSYHKFNE+QREQ VL RL
Sbjct:    65 GNLEDITLRAIRVLRSADVILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRL 124

Query:   151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTF 210
             KQGEIVALISDAGTPGISDPGT+LAK+C  E I V+PIPGA A VAALSASGL TDEFTF
Sbjct:   125 KQGEIVALISDAGTPGISDPGTQLAKMCAKENIDVIPIPGACAVVAALSASGLETDEFTF 184

Query:   211 VGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKM 270
             VGFLPKH+ +R ERL++S+NE +TQIFYVPPHKL QFLEET+  FG SR+CVIAREITK+
Sbjct:   185 VGFLPKHSGTRKERLIVSSNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIAREITKL 244

Query:   271 HEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLS 330
             HEEFWRG++ EAK+ F   QPKGEIT+L+EGK     E P+E QLE+ELRGLIS GH+LS
Sbjct:   245 HEEFWRGSIAEAKQEFLIRQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLS 304

Query:   331 MAVKLVAQGTSVRRKTIYSLALRKFGKQIEAADDSNS 367
              AVK VA+ TS+R+K +YSLAL+KFGKQI   ++  +
Sbjct:   305 TAVKTVAERTSMRKKEVYSLALKKFGKQIRVEEEDEA 341
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008168 "methyltransferase activity" evidence=IEA;ISS
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
UNIPROTKB|Q3AG07 rsmI "Ribosomal RNA small subunit methyltransferase I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0055 CHY_0055 "conserved hypothetical protein TIGR00096" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q820W0 rsmI "Ribosomal RNA small subunit methyltransferase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1739 CBU_1739 "tetrapyrrole (Corrin/Porphyrin) methylase domain protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FF6 rsmI "Ribosomal RNA small subunit methyltransferase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0653 GSU_0653 "tetrapyrrole methylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q48EE8 rsmI "Ribosomal RNA small subunit methyltransferase I" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0386 DET_0386 "tetrapyrrole methylase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K6I3 yraL "Ribosomal RNA small subunit methyltransferase I" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
cd11648218 cd11648, RsmI, Ribosomal RNA small subunit methylt 1e-126
COG0313275 COG0313, COG0313, Predicted methyltransferases [Ge 1e-113
PRK14994287 PRK14994, PRK14994, SAM-dependent 16S ribosomal RN 5e-67
TIGR00096276 TIGR00096, TIGR00096, probable S-adenosylmethionin 8e-50
cd11649229 cd11649, RsmI_like, Uncharacterized subfamily of t 1e-38
pfam00590202 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porp 2e-29
cd09815224 cd09815, TP_methylase, S-AdoMet dependent tetrapyr 1e-27
cd11724255 cd11724, TP_methylase_like, Uncharacterized subfam 2e-09
COG0007244 COG0007, CysG, Uroporphyrinogen-III methylase [Coe 2e-08
cd11647241 cd11647, Diphthine_synthase, Diphthine synthase, a 4e-08
COG1010249 COG1010, CobJ, Precorrin-3B methylase [Coenzyme me 2e-07
cd11646240 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-m 6e-07
cd11645226 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methy 2e-06
COG1798260 COG1798, DPH5, Diphthamide biosynthesis methyltran 4e-06
TIGR01466239 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltrans 7e-06
TIGR01469236 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-met 2e-05
PLN02625263 PLN02625, PLN02625, uroporphyrin-III C-methyltrans 3e-05
PRK04160258 PRK04160, PRK04160, diphthine synthase; Provisiona 5e-05
COG2241210 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme 7e-05
TIGR02467204 TIGR02467, CbiE, precorrin-6y C5,15-methyltransfer 1e-04
COG2243234 COG2243, CobF, Precorrin-2 methylase [Coenzyme met 2e-04
cd11642233 cd11642, SUMT, Uroporphyrin-III C-methyltransferas 6e-04
PTZ00175270 PTZ00175, PTZ00175, diphthine synthase; Provisiona 7e-04
cd11644201 cd11644, Precorrin-6Y-methylase, Precorrin-6Y meth 9e-04
PRK05787210 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methy 0.001
TIGR01465247 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransf 0.001
PRK05576229 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methy 0.002
TIGR01467230 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransf 0.004
>gnl|CDD|212507 cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI Back     alignment and domain information 
 Score =  362 bits (931), Expect = e-126
 Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLVATPIGNLEDITLRAL VLK  ++I  EDTRH+ KLL +Y IK PL+SYH+ NE +R
Sbjct: 1   LYLVATPIGNLEDITLRALEVLKEVDLIACEDTRHTKKLLNHYGIKKPLISYHEHNEEER 60

Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
            + ++ RLK+G+ VAL+SDAGTP ISDPG  L +  ++  IPVVPIPG SA + ALSASG
Sbjct: 61  AEEIIERLKEGKSVALVSDAGTPLISDPGYRLVRAAIEAGIPVVPIPGPSALITALSASG 120

Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           L TD FTF+GFLP+    R + L   ANE +T +FY  PH+LL+ LE+ + + G  R   
Sbjct: 121 LPTDRFTFLGFLPRKKGERRKLLEELANEPRTLVFYESPHRLLKTLEDLAEVGG-DREIA 179

Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301
           +ARE+TK+HEEF+RGTL E       ++PKGE  +++EG
Sbjct: 180 VARELTKLHEEFFRGTLSELLAHLEENEPKGEFVLVIEG 218

Proteins in this family catalyze the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA using S-adenosyl-L-methionine (SAM or Ado-Met) as the methyl donor. RsmI proteins employ the 30S subunit (not the 16S rRNA) as a substrate, suggesting that the methylation reaction occurs at a late step during 30S assembly in the cell. Length = 218
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function prediction only] Back     alignment and domain information
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|129204 TIGR00096, TIGR00096, probable S-adenosylmethionine-dependent methyltransferase, YraL family Back     alignment and domain information
>gnl|CDD|212508 cd11649, RsmI_like, Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI) Back     alignment and domain information
>gnl|CDD|216012 pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases Back     alignment and domain information
>gnl|CDD|212499 cd09815, TP_methylase, S-AdoMet dependent tetrapyrrole methylases Back     alignment and domain information
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet dependent tetrapyrrole methylases Back     alignment and domain information
>gnl|CDD|223086 COG0007, CysG, Uroporphyrinogen-III methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212506 cd11647, Diphthine_synthase, Diphthine synthase, also known as DPH5 Back     alignment and domain information
>gnl|CDD|223942 COG1010, CobJ, Precorrin-3B methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212505 cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (CobJ/CbiH) Back     alignment and domain information
>gnl|CDD|212504 cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL Back     alignment and domain information
>gnl|CDD|224711 COG1798, DPH5, Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase Back     alignment and domain information
>gnl|CDD|233426 TIGR01469, cobA_cysG_Cterm, uroporphyrin-III C-methyltransferase Back     alignment and domain information
>gnl|CDD|178232 PLN02625, PLN02625, uroporphyrin-III C-methyltransferase Back     alignment and domain information
>gnl|CDD|235231 PRK04160, PRK04160, diphthine synthase; Provisional Back     alignment and domain information
>gnl|CDD|225150 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233878 TIGR02467, CbiE, precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Back     alignment and domain information
>gnl|CDD|225152 COG2243, CobF, Precorrin-2 methylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212501 cd11642, SUMT, Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT) Back     alignment and domain information
>gnl|CDD|185500 PTZ00175, PTZ00175, diphthine synthase; Provisional Back     alignment and domain information
>gnl|CDD|212503 cd11644, Precorrin-6Y-methylase, Precorrin-6Y methyltransferase, the cobalamin biosynthesis enzyme CbiE Back     alignment and domain information
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase; Validated Back     alignment and domain information
>gnl|CDD|200107 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransferase Back     alignment and domain information
>gnl|CDD|235512 PRK05576, PRK05576, cobalt-precorrin-2 C(20)-methyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233425 TIGR01467, cobI_cbiL, precorrin-2 C20-methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
COG0313275 Predicted methyltransferases [General function pre 100.0
PRK14994287 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O- 100.0
TIGR00096276 probable S-adenosylmethionine-dependent methyltran 100.0
PRK06136249 uroporphyrin-III C-methyltransferase; Reviewed 100.0
PRK15473257 cbiF cobalt-precorrin-4 C(11)-methyltransferase; P 100.0
TIGR01469236 cobA_cysG_Cterm uroporphyrin-III C-methyltransfera 100.0
TIGR01465229 cobM_cbiF precorrin-4 C11-methyltransferase. This 100.0
PRK05765246 precorrin-3B C17-methyltransferase; Provisional 100.0
PLN02625263 uroporphyrin-III C-methyltransferase 100.0
PRK15478241 cbiH cobalt-precorrin-3B C(17)-methyltransferase; 100.0
COG2875254 CobM Precorrin-4 methylase [Coenzyme metabolism] 100.0
COG0007244 CysG Uroporphyrinogen-III methylase [Coenzyme meta 100.0
PF00590210 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Meth 100.0
TIGR01466239 cobJ_cbiH precorrin-3B C17-methyltransferase. This 100.0
TIGR01467230 cobI_cbiL precorrin-2 C20-methyltransferase. This 100.0
PRK07168 474 bifunctional uroporphyrinogen-III methyltransferas 100.0
COG1010249 CobJ Precorrin-3B methylase [Coenzyme metabolism] 100.0
PRK05991250 precorrin-3B C17-methyltransferase; Provisional 100.0
PRK10637457 cysG siroheme synthase; Provisional 100.0
PRK05576229 cobalt-precorrin-2 C(20)-methyltransferase; Valida 100.0
PRK05787210 cobalt-precorrin-6Y C(5)-methyltransferase; Valida 99.98
TIGR02467204 CbiE precorrin-6y C5,15-methyltransferase (decarbo 99.97
PRK05948238 precorrin-2 methyltransferase; Provisional 99.97
TIGR00522257 dph5 diphthine synthase. This protein participates 99.97
PTZ00175270 diphthine synthase; Provisional 99.97
PRK05990241 precorrin-2 C(20)-methyltransferase; Reviewed 99.96
PRK04160258 diphthine synthase; Provisional 99.96
COG2243234 CobF Precorrin-2 methylase [Coenzyme metabolism] 99.95
PRK08284253 precorrin 6A synthase; Provisional 99.95
COG2241210 CobL Precorrin-6B methylase 1 [Coenzyme metabolism 99.95
TIGR02434249 CobF precorrin-6A synthase (deacetylating). This m 99.95
KOG1527506 consensus Uroporphyrin III methyltransferase [Coen 99.93
COG1798260 DPH5 Diphthamide biosynthesis methyltransferase [T 99.88
KOG3123272 consensus Diphthine synthase [Translation, ribosom 99.68
COG3956 488 Protein containing tetrapyrrole methyltransferase 99.11
PF1330964 HTH_22: HTH domain 86.78
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 85.85
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 85.34
>COG0313 Predicted methyltransferases [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-70  Score=515.89  Aligned_cols=273  Identities=49%  Similarity=0.720  Sum_probs=253.8

Q ss_pred             CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEE
Q 017645           78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA  157 (368)
Q Consensus        78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Va  157 (368)
                      +++|+||+|+|||||++|||+||+++|++||+|+|||||++++||++|+|++++++||+||+++....+++.+++|++||
T Consensus         2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va   81 (275)
T COG0313           2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA   81 (275)
T ss_pred             CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEE
Q 017645          158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF  237 (368)
Q Consensus       158 lvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVl  237 (368)
                      +|||||+|+|||||+.||++|++.||+|+++||+||+++|+++||+|.++|.|.||||.+.++|.+.|+.+.+...|+||
T Consensus        82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If  161 (275)
T COG0313          82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF  161 (275)
T ss_pred             EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCcCccCCCChHHHHH
Q 017645          238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEK  317 (368)
Q Consensus       238 yesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~~~~~~~~~~~~~  317 (368)
                      ||+|||+.++|+++.+.+|.+++++|||||||.+|++++|++.++.+++.+...|||||+||.|+....    .+.....
T Consensus       162 yEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~~~----~~~~~~~  237 (275)
T COG0313         162 YESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEGKNKAE----AELSLDA  237 (275)
T ss_pred             EecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeCCcccc----cccchhH
Confidence            999999999999999999989999999999999999999999999999876437999999999965432    1112223


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645          318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK  354 (368)
Q Consensus       318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~  354 (368)
                      .+..++..++++|+|++.+|+.+|++||++|+.+++.
T Consensus       238 ~~~~~~~~~l~~k~A~~~~a~~~~~~k~~LY~~~l~~  274 (275)
T COG0313         238 EITLLLLQALPLKKAAKLAAKITGLNKKELYQLALES  274 (275)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHCcCHHHHHHHHHhc
Confidence            3444555679999999999999999999999999865

>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional Back     alignment and domain information
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family Back     alignment and domain information
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed Back     alignment and domain information
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional Back     alignment and domain information
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase Back     alignment and domain information
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase Back     alignment and domain information
>PRK05765 precorrin-3B C17-methyltransferase; Provisional Back     alignment and domain information
>PLN02625 uroporphyrin-III C-methyltransferase Back     alignment and domain information
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional Back     alignment and domain information
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] Back     alignment and domain information
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism] Back     alignment and domain information
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family Back     alignment and domain information
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase Back     alignment and domain information
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase Back     alignment and domain information
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed Back     alignment and domain information
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism] Back     alignment and domain information
>PRK05991 precorrin-3B C17-methyltransferase; Provisional Back     alignment and domain information
>PRK10637 cysG siroheme synthase; Provisional Back     alignment and domain information
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated Back     alignment and domain information
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated Back     alignment and domain information
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit Back     alignment and domain information
>PRK05948 precorrin-2 methyltransferase; Provisional Back     alignment and domain information
>TIGR00522 dph5 diphthine synthase Back     alignment and domain information
>PTZ00175 diphthine synthase; Provisional Back     alignment and domain information
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed Back     alignment and domain information
>PRK04160 diphthine synthase; Provisional Back     alignment and domain information
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism] Back     alignment and domain information
>PRK08284 precorrin 6A synthase; Provisional Back     alignment and domain information
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism] Back     alignment and domain information
>TIGR02434 CobF precorrin-6A synthase (deacetylating) Back     alignment and domain information
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only] Back     alignment and domain information
>PF13309 HTH_22: HTH domain Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3kwp_A296 Crystal Structure Of Putative Methyltransferase Fro 1e-52
3hh1_B117 The Structure Of A Tetrapyrrole Methylase Family Pr 7e-24
3fq6_A115 The Crystal Structure Of A Methyltransferase Domain 4e-21
3ffy_A115 Putative Tetrapyrrole (CorrinPORPHYRIN) METHYLTRANS 4e-20
1wyz_A242 X-Ray Structure Of The Putative Methyltransferase F 3e-11
1ve2_A235 Crystal Structure Of Uroporphyrin-Iii-C-Methyltrans 2e-06
>pdb|3KWP|A Chain A, Crystal Structure Of Putative Methyltransferase From Lactobacillus Brevis Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 162/270 (60%), Gaps = 4/270 (1%)
Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
           LYLV TPIGNL+D T RA++ L + ++I +EDTR++ KLL ++ I T  +S+H+ N  +R
Sbjct: 18  LYLVPTPIGNLDDXTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQER 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
              ++ +LKQG  +A +SDAG P ISDPG EL   C+D  IPVVP+PGA+A + AL ASG
Sbjct: 78  IPQLIAKLKQGXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
           LA   F F GFL +  + R   +   A   +T IFY  PH+L + L+  +  FG  R  V
Sbjct: 138 LAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKKTLQNLAAGFGDERPAV 197
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPS----EDQLEKE 318
           + RE+TK +EEF RG+L E     ++   +GE  VLV G         +     + ++ +
Sbjct: 198 LCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPTTAATTAVDLSEPIDVQ 257
Query: 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIY 348
           +  LI+AG   + A+K VA+    +++ IY
Sbjct: 258 VDRLIAAGEKPNDAIKEVAKLRGAKKQEIY 287
>pdb|3FQ6|A Chain A, The Crystal Structure Of A Methyltransferase Domain From Bacteroides Thetaiotaomicron Vpi Length = 115 Back     alignment and structure
>pdb|3FFY|A Chain A, Putative Tetrapyrrole (CorrinPORPHYRIN) METHYLTRANSFERASE FROM Bacteroides Fragilis Length = 115 Back     alignment and structure
>pdb|1WYZ|A Chain A, X-Ray Structure Of The Putative Methyltransferase From Bacteroides Thetaiotaomicron Vpi-5482 At The Resolution 2.5 A. Norteast Structural Genomics Consortium Target Btr28 Length = 242 Back     alignment and structure
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase From Thermus Thermophilus Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3kwp_A296 Predicted methyltransferase; putative methyltransf 1e-140
1wyz_A242 Putative S-adenosylmethionine-dependent methyltra; 1e-114
3hh1_A117 Tetrapyrrole methylase family protein; chlorobium 8e-69
3ffy_A115 Putative tetrapyrrole (corrin/porphyrin) methylas; 2e-48
1vhv_A268 Diphthine synthase; structural genomics, transfera 2e-34
1wde_A294 Probable diphthine synthase; structural genomics, 3e-23
3i4t_A292 Diphthine synthase; niaid, ssgcid, infectious dise 2e-18
2z6r_A265 Diphthine synthase; methyltransferase, S-adenosyl- 2e-17
2zvb_A295 Precorrin-3 C17-methyltransferase; plasmid, struct 7e-11
3nut_A251 Precorrin-3 methylase; vitamin B12 pathway, cobala 2e-10
4e16_A253 Precorrin-4 C(11)-methyltransferase; structural ge 3e-08
1cbf_A285 Cobalt-precorrin-4 transmethylase; precorrin-4 met 5e-08
3ndc_A264 Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH 1e-07
2e0n_A259 Precorrin-2 C20-methyltransferase; cobalt-factor I 1e-07
2npn_A251 Putative cobalamin synthesis related protein; COBF 4e-06
2qbu_A232 Precorrin-2 methyltransferase; HET: SAH; 2.10A {Me 4e-06
3nd1_A275 Precorrin-6A synthase/COBF protein; methyltransfer 5e-05
1pjq_A457 CYSG, siroheme synthase; rossman fold, nucleotide 3e-04
2bb3_A221 Cobalamin biosynthesis precorrin-6Y methylase (CB; 5e-04
2z67_A456 O-phosphoseryl-tRNA(SEC) selenium transferase; sel 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Length = 296 Back     alignment and structure
 Score =  400 bits (1030), Expect = e-140
 Identities = 112/290 (38%), Positives = 168/290 (57%), Gaps = 4/290 (1%)

Query: 67  NLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
             + +Q S +      LYLV TPIGNL+D+T RA++ L + ++I +EDTR++ KLL ++ 
Sbjct: 2   GHMEQQRSFQTETGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFE 61

Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
           I T  +S+H+ N  +R   ++ +LKQG  +A +SDAG P ISDPG EL   C+D  IPVV
Sbjct: 62  ITTKQISFHEHNTQERIPQLIAKLKQGMQIAQVSDAGMPSISDPGHELVNACIDAHIPVV 121

Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQ 246
           P+PGA+A + AL ASGLA   F F GFL +  + R   +   A   +T IFY  PH+L +
Sbjct: 122 PLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKK 181

Query: 247 FLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICV 306
            L+  +  FG  R  V+ RE+TK +EEF RG+L E     ++   +GE  VLV G     
Sbjct: 182 TLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPT 241

Query: 307 VETPSE----DQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
               +     + ++ ++  LI+AG   + A+K VA+    +++ IY    
Sbjct: 242 TAATTAVDLSEPIDVQVDRLIAAGEKPNDAIKEVAKLRGAKKQEIYRQYH 291
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1 Length = 242 Back     alignment and structure
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A Length = 115 Back     alignment and structure
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Length = 268 Back     alignment and structure
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Length = 294 Back     alignment and structure
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Length = 292 Back     alignment and structure
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Length = 265 Back     alignment and structure
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* Length = 295 Back     alignment and structure
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus} Length = 251 Back     alignment and structure
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile} Length = 253 Back     alignment and structure
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Length = 285 Back     alignment and structure
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A Length = 264 Back     alignment and structure
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Length = 259 Back     alignment and structure
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} Length = 251 Back     alignment and structure
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 232 Back     alignment and structure
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus} Length = 275 Back     alignment and structure
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Length = 457 Back     alignment and structure
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Length = 221 Back     alignment and structure
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
3kwp_A296 Predicted methyltransferase; putative methyltransf 100.0
1wyz_A242 Putative S-adenosylmethionine-dependent methyltra; 100.0
4e16_A253 Precorrin-4 C(11)-methyltransferase; structural ge 100.0
3ndc_A264 Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH 100.0
1cbf_A285 Cobalt-precorrin-4 transmethylase; precorrin-4 met 100.0
2ybo_A294 Methyltransferase; SUMT, NIRE, heme D1 biosynthesi 100.0
1s4d_A280 Uroporphyrin-III C-methyltransferase; tetrapyrrole 100.0
3nut_A251 Precorrin-3 methylase; vitamin B12 pathway, cobala 100.0
1ve2_A235 Uroporphyrin-III C-methyltransferase; heme, biosyn 100.0
1va0_A239 Uroporphyrin-III C-methyltransferase; structural g 100.0
1pjq_A457 CYSG, siroheme synthase; rossman fold, nucleotide 100.0
2e0n_A259 Precorrin-2 C20-methyltransferase; cobalt-factor I 100.0
2zvb_A295 Precorrin-3 C17-methyltransferase; plasmid, struct 100.0
2qbu_A232 Precorrin-2 methyltransferase; HET: SAH; 2.10A {Me 100.0
3i4t_A292 Diphthine synthase; niaid, ssgcid, infectious dise 100.0
3nd1_A275 Precorrin-6A synthase/COBF protein; methyltransfer 100.0
2z6r_A265 Diphthine synthase; methyltransferase, S-adenosyl- 100.0
1vhv_A268 Diphthine synthase; structural genomics, transfera 100.0
2npn_A251 Putative cobalamin synthesis related protein; COBF 100.0
1wde_A294 Probable diphthine synthase; structural genomics, 100.0
2bb3_A221 Cobalamin biosynthesis precorrin-6Y methylase (CB; 99.97
3ffy_A115 Putative tetrapyrrole (corrin/porphyrin) methylas; 99.96
3hh1_A117 Tetrapyrrole methylase family protein; chlorobium 99.95
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Back     alignment and structure
Probab=100.00  E-value=1.4e-62  Score=475.81  Aligned_cols=278  Identities=40%  Similarity=0.626  Sum_probs=216.0

Q ss_pred             CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645           79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL  158 (368)
Q Consensus        79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val  158 (368)
                      |+|+||+||+||||+++||+||+++|++||+|+|+|||++.++|++++++++++++|+||+.+..+.+++.+++|++||+
T Consensus        14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va~   93 (296)
T 3kwp_A           14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIAQ   93 (296)
T ss_dssp             CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEe
Q 017645          159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY  238 (368)
Q Consensus       159 vSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVly  238 (368)
                      +||+|||+|||||.++++.+.+.|++|++||||||+++|++++|+|+++|.|+||+|++..++...|+.++..+.|+|||
T Consensus        94 lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~y  173 (296)
T 3kwp_A           94 VSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFY  173 (296)
T ss_dssp             ECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEEE
T ss_pred             eccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEee
Confidence            99999999999999999999999999999999999999999999999999999999998777778899999999999999


Q ss_pred             cCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCcCccCCCCh----HH
Q 017645          239 VPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSE----DQ  314 (368)
Q Consensus       239 esp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~~~~~~~~----~~  314 (368)
                      ++|||+.++++.|.+.++++++++|++++|+++|++++|+++++.+++.+..++||+||||.|..........+    .+
T Consensus       174 ~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~~~~~~~~~~~~~~~~~  253 (296)
T 3kwp_A          174 EAPHRLKKTLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPTTAATTAVDLSEP  253 (296)
T ss_dssp             ECGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCCSSCC------------
T ss_pred             eCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCCCCCCcccchhcccccc
Confidence            99999999999999888888999999999999999999999999999877778999999998765422111111    22


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645          315 LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFG  356 (368)
Q Consensus       315 ~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~  356 (368)
                      +.+.+..++++|+++|+|+|.+|+.+|++||++|+.++++.+
T Consensus       254 ~~~~~~~~~~~~~~~k~a~~~~a~~~g~~~~~~y~~~~~~~~  295 (296)
T 3kwp_A          254 IDVQVDRLIAAGEKPNDAIKEVAKLRGAKKQEIYRQYHHLDE  295 (296)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHhccchHHHHHHHhhcccc
Confidence            445566777779999999999999999999999999987643
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1 Back     alignment and structure
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile} Back     alignment and structure
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A Back     alignment and structure
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A* Back     alignment and structure
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A* Back     alignment and structure
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1 Back     alignment and structure
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus} Back     alignment and structure
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1 Back     alignment and structure
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A Back     alignment and structure
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Back     alignment and structure
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Back     alignment and structure
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A* Back     alignment and structure
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Back     alignment and structure
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus} Back     alignment and structure
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... Back     alignment and structure
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Back     alignment and structure
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae} Back     alignment and structure
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1 Back     alignment and structure
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1 Back     alignment and structure
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d1wdea_289 c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum 2e-43
d1wyza1233 c.90.1.1 (A:2-234) Putative methytransferase BT419 6e-43
d1cbfa_239 c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase 3e-36
d1vhva_251 c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon A 2e-35
d2deka1265 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyroc 4e-34
d1ve2a1235 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransf 1e-31
d1s4da_265 c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase 1e-31
d1va0a1225 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 { 6e-30
d1pjqa2242 c.90.1.1 (A:216-457) Siroheme synthase CysG, domai 5e-29
d2bb3a1195 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Ar 2e-19
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Length = 289 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tetrapyrrole methylase
superfamily: Tetrapyrrole methylase
family: Tetrapyrrole methylase
domain: Diphthine synthase, DphB
species: Aeropyrum pernix [TaxId: 56636]

 Score =  150 bits (379), Expect = 2e-43
 Identities = 49/297 (16%), Positives = 89/297 (29%), Gaps = 47/297 (15%)

Query: 83  LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY-----YNIKTPLLSYHKF 137
           L LV          TL AL  ++ A+V+  E     G    Y        +  ++   + 
Sbjct: 5   LLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 63

Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
           +  +R + +++R     +  +   AG P ++   + LA   ++  + V  IPG S   AA
Sbjct: 64  DLEERSREIVSRALDAVVAVVT--AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAA 121

Query: 198 LSASGLATDEFTFVGFLPKHARSRT------ERLMLSANEVKTQIFY---------VPPH 242
             A+ L+   F     LP   R  T         +     + T              P  
Sbjct: 122 RGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQ 181

Query: 243 KLLQFLE---------ETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKG 293
            +   LE             L       ++       H   +  +L            +G
Sbjct: 182 GVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLST----ADVEG 237

Query: 294 EITVLVEGKAICVVETPSE-DQLEKELRGLISAG-HNLSMAVKLVAQGTSVRRKTIY 348
            +  +V          P+    +E+ L    S     L     +        +K +Y
Sbjct: 238 GVYSIV---------IPARLSGVEEWLLAAASGQRRPLEYDRSVYETVEENCKKGVY 285
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 233 Back     information, alignment and structure
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]} Length = 239 Back     information, alignment and structure
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 251 Back     information, alignment and structure
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Length = 265 Back     information, alignment and structure
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]} Length = 235 Back     information, alignment and structure
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]} Length = 265 Back     information, alignment and structure
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus thermophilus [TaxId: 274]} Length = 225 Back     information, alignment and structure
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]} Length = 242 Back     information, alignment and structure
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d1wyza1233 Putative methytransferase BT4190 {Bacteroides thet 100.0
d1s4da_265 Uroporphyrin-III C-methyltransferase (SUMT, UROM, 100.0
d1wdea_289 Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 100.0
d1cbfa_239 Cobalt precorrin-4 methyltransferase CbiF {Bacillu 100.0
d1ve2a1235 Uroporphyrin-III C-methyltransferase (SUMT, UROM, 100.0
d1pjqa2242 Siroheme synthase CysG, domains 4 and 5 {Salmonell 100.0
d1vhva_251 Diphthine synthase, DphB {Archaeon Archaeoglobus f 100.0
d2deka1265 Diphthine synthase, DphB {Pyrococcus horikoshii [T 99.97
d2bb3a1195 Precorrin-6y methylase CbiE {Archaeoglobus fulgidu 99.96
d1va0a1225 Hypothetical protein TTHA0667 {Thermus thermophilu 99.95
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 90.87
d2ezla_99 Ibeta subdomain of the mu end DNA-binding domain o 84.97
d1gdta143 gamma,delta resolvase (C-terminal domain) {Escheri 80.4
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tetrapyrrole methylase
superfamily: Tetrapyrrole methylase
family: Tetrapyrrole methylase
domain: Putative methytransferase BT4190
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=7.2e-50  Score=371.45  Aligned_cols=218  Identities=23%  Similarity=0.384  Sum_probs=190.7

Q ss_pred             CeEEEEecCCCCc---cchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-----EEEcCCCcHHHHHHHHHHHHhC
Q 017645           81 PGLYLVATPIGNL---EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRLKQ  152 (368)
Q Consensus        81 g~LyiVGtGpGn~---~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~-----~is~~~~ne~~~~~~Ii~~l~~  152 (368)
                      +.||+|||||||+   +|||+||+++|++||+|+|||||++++||++++++.+     ...+|+|++.+..+.+++.+.+
T Consensus         2 ~~Lylv~tpiGnl~~~~~it~ra~~~l~~~d~i~~Edtr~~~~lL~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~   81 (233)
T d1wyza1           2 TALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAG   81 (233)
T ss_dssp             CSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCCchhhhcCHHHHHHHHhCCEEEEEeCHHHHHHHHHcCCccccchhhhhhhhhhhhHHHhHHHHHHHhc
Confidence            5799999999997   7999999999999999999999999999999998654     5788999999999999999999


Q ss_pred             CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHh----h
Q 017645          153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLML----S  228 (368)
Q Consensus       153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~----l  228 (368)
                      |++|+++||+|||+|||||+++|++|+++|++|+++|||||+++|++.+|+|.++|.|.||+|...+.+...+..    +
T Consensus        82 g~~v~lvsDaG~P~IsDPG~~lV~~~~~~gi~v~iiPG~SA~~aA~s~sG~~~~~~~f~gfl~~~~~~~~~~~~~l~~~~  161 (233)
T d1wyza1          82 GASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRV  161 (233)
T ss_dssp             TCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEeccccccccchhhhhhhhhhcccccccccccCcchheeeeeccccccccccceeeeeecCcccchhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999887766554443    3


Q ss_pred             hcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEE
Q 017645          229 ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV  299 (368)
Q Consensus       229 ~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi  299 (368)
                      .....|+|||++|||+.++++.|.+.++++++++|++++|++||++++|+++++.+.+.+. .|+++++||
T Consensus       162 ~~~~~t~v~~e~~~r~~~~l~~l~~~~~~~t~v~I~~elTk~~E~i~~gtl~~i~~~~~~~-~k~p~viii  231 (233)
T d1wyza1         162 YAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPEL-SKIPCIFLL  231 (233)
T ss_dssp             HHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSSSCEEEEEEHHHHSSCCC----CCCEEEEE
T ss_pred             hccCceeEEEecchhHHHHHHHHHHhcCCCCEEEEEEeCCccceEEEEeEHHHHHHhhhhc-CCCCEEEEE
Confidence            5567899999999999999999999998899999999999999999999999997765432 378977666
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]} Back     information, alignment and structure
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]} Back     information, alignment and structure
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure