Citrus Sinensis ID: 017647

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccEEEEEEEEHHHHccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEccccccccEEEccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEEcccccEEEcccEEEEEEccHHHHccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccEEEEccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccccEccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEccccccccccEEEEEEEEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEccccEEEccccEEEEEEEcHHHHHcccEEEEc
Coil and Loop (DISEMBL)
mvstattltllphpslsfshsssssflaggthlrshKNFAALtlsadscpfggsklnssnarsstyrfgrsvvcasgdyyatlgvpksasgKEIKAAYRKLARqyhpdvnkepgateKFKEISAAYEVLSDDKKRAMYDqygeagvkstvgggssayttnpfdlfetffgpsmggfpgmnqtgfrtrrrstvtkgedLRYDIVLEFSESIFGAekefelshletcevctgtgakmgskmricstcggrgqvmrtdqtpfglfsqvsvcpscggegevISEYCRKCsgegrirlkknikvkvppgvstgSILRVvgegdagprggppgdlyvyldveeipgiqrdgidLFSTISISYLDAIMGTVVKVT
Flexible Loop (DISEMBL)
mvstattltllphpslsfsHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKlnssnarsstyrFGRSVVCASGDYYAtlgvpksasgkEIKAAYRKLArqyhpdvnkepgatekfkEISAAYEVLSDDKKRAMYDQYGEagvkstvgggsSAYTTNPFDLFETFFGPSMGGfpgmnqtgfrtrrrstvtkgedlryDIVLEFSESIFGAEKEFELSHLETCEVCTgtgakmgskMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSgegrirlkknikvkvppgvstGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Low Complexity Region (SEG)
MVstattltllphpslsfshsssssflaggtHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETffgpsmggfpgmNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVgegdagprggppgDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Disordered region (IsUnstruct)
*************************************NFAALTL********************TYRFGRSVVCASGDYYATLGVPK******IKAAYRKL***********************AYEVL*******MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRT***STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG********PGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV***
Disordered Region (DISOPRED)
*********L******************************************************************GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS*******AYTTNPFDLFETFFGPSMG************************RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR**********GGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV*
Disordered Region (DISEMBL)
MVSTATTLTLLPHPSL**********LAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Disordered Region (DISPRO)
*****TTLTLLPHP*********SSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG**M*SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.758	0.747	0.545	3e-87
B7KEJ8	375	Chaperone protein DnaJ OS	yes	no	0.779	0.765	0.563	4e-86
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.769	0.756	0.534	3e-85
Q114R3	374	Chaperone protein DnaJ OS	yes	no	0.774	0.762	0.532	1e-84
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.774	0.762	0.523	2e-83
Q2JW78	394	Chaperone protein DnaJ OS	yes	no	0.755	0.705	0.533	2e-82
B0JW23	374	Chaperone protein DnaJ OS	yes	no	0.777	0.764	0.529	8e-82
Q7VEJ6	378	Chaperone protein DnaJ OS	yes	no	0.774	0.753	0.513	3e-81
Q2JH49	394	Chaperone protein DnaJ OS	yes	no	0.758	0.708	0.515	1e-80
Q5N0G1	376	Chaperone protein DnaJ OS	yes	no	0.758	0.742	0.503	8e-78

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score =  322 bits (825), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/297 (54%), Positives = 205/297 (69%), Gaps = 18/297 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y  LGV +SA  +E+K AYR+LAR+YHPDVNKEPGA EKFKEI+ AYEVLSD + RA 
Sbjct: 4   DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARAN 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRT--RRRST 191
           YD++GEAGV      G S +         D+FETFFG            GF T  RR+  
Sbjct: 64  YDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFFG------------GFTTSSRRQQG 111

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+GEDLRYD+ LEF E++FG EKE  ++HLETC+ C GTGAK G++   CSTCGG GQV
Sbjct: 112 PTRGEDLRYDLKLEFREAVFGGEKEIRINHLETCKTCQGTGAKPGTRPVTCSTCGGVGQV 171

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R+ +TPFG F+Q++ CP+CGG G VI + C  C G+G I++ K +K+ +P GV  G+ L
Sbjct: 172 RRSARTPFGSFTQLTTCPTCGGSGVVIEDRCESCGGQGHIQVSKKLKITIPAGVDNGTRL 231

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           RV GEGDAG RGGPPGDLYVYL V+  P  QR+G ++ S I ISYL AI+G  + V+
Sbjct: 232 RVSGEGDAGLRGGPPGDLYVYLFVQPDPEFQREGNNILSRIKISYLQAILGCRISVS 288

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/293 (56%), Positives = 199/293 (67%), Gaps = 6/293 (2%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
           GDYY  LGV + A+  EIK AYR+LAR+YHPDVNKE GA E+FKEI+ AYE+LS+ + RA
Sbjct: 3   GDYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
            YD++GEAGV S  G G          D+FET F     GF GM  TG  +RRR+   +G
Sbjct: 63  RYDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFS----GFGGMG-TGTSSRRRTGPVRG 117

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           +DLR D  L F E++FG EKE  + HLETC+VC G+GAK G+  R CSTC G GQV R  
Sbjct: 118 DDLRLDFKLNFREAVFGGEKEIRIRHLETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRAT 177

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TPFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G+ LRV  
Sbjct: 178 RTPFGTFAQVSVCPTCNGSGEVIEEKCEACGGSGRKQETKKLKITIPAGVDNGTRLRVSR 237

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           EGDAG RGGPPGDLYVYL VE     QR+GID+ S ISISYL AI+G  + V 
Sbjct: 238 EGDAGQRGGPPGDLYVYLSVETDEEFQREGIDIKSEISISYLQAILGCRLSVN 290

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score =  315 bits (807), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 156/292 (53%), Positives = 204/292 (69%), Gaps = 9/292 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA   E+K +YR+LAR+YHPDVNKEPGA +KFKEI+ AYE LSD + R  
Sbjct: 4   DYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTT--NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
           YDQ+GEAGV S  G G   +       D+FETFF     GF G  Q+G   RRRS   +G
Sbjct: 64  YDQFGEAGVSSAAGAGYQDFGDFGGFADIFETFFS----GFGGSPQSG---RRRSGPARG 116

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           EDLR+D+ L+F E++FG E++  +SHLE+C+ C GTGAK G++ + CSTC G GQV R  
Sbjct: 117 EDLRFDLKLKFREAVFGGEQQIRISHLESCKTCEGTGAKPGTRPQTCSTCQGSGQVRRMT 176

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TP G F+QVSVCP+C G+G+V++E C  C G G+ ++ K +++K+P GV TG+ LRV  
Sbjct: 177 RTPLGNFTQVSVCPTCNGQGQVVTEKCDSCGGRGQNQVSKKLQIKIPAGVDTGTRLRVSN 236

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           EGDAG +GGPPGDLYVYL V+E    +RDG ++ S   ISYL AI+G  + V
Sbjct: 237 EGDAGQKGGPPGDLYVYLFVQEDSEFRRDGTNVLSEFKISYLQAILGAQLPV 288

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|Q114R3|DNAJ_TRIEI Chaperone protein DnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/291 (53%), Positives = 199/291 (68%), Gaps = 6/291 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA  +E+K AYR+LAR+YHPDVNKEPG+ E+FKEI+ AYE+LSD + +A 
Sbjct: 4   DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           +D++GEAGV    GG +S ++T+  D F   F     GF G    G   RRR+   +G+D
Sbjct: 64  FDRFGEAGVS---GGAASGFSTDFSDSFADIFESFFSGFGGAGTQG---RRRTGPVRGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D+ LEF E+IFG +KE  + HLETC  C G+GAK G+K + CSTCGG GQV R  +T
Sbjct: 118 LRLDLNLEFIEAIFGGDKELTIKHLETCGTCNGSGAKPGTKPQTCSTCGGTGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PF  F+QVSVCPSC G G++I E C  C G G+    K IK+ +P GV  G+ LRV  EG
Sbjct: 178 PFSSFTQVSVCPSCNGSGQIIEEKCVDCGGRGQKEATKKIKITIPGGVDNGTRLRVSNEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           DAG  GGPPGDLYV+L V+  P  QRDGI++ S I ISYL AI+G  +++ 
Sbjct: 238 DAGRMGGPPGDLYVFLSVKNHPEFQRDGINIISQIKISYLQAILGCCLEIN 288

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score =  309 bits (792), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/292 (52%), Positives = 203/292 (69%), Gaps = 7/292 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  +++K AYR+LAR+YHPDVNKE GA E+FKEI+ AYEVLSD + RA 
Sbjct: 4   DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++GEAGV     G         F D+FE+ F     GF G+      +RRR+  ++G+
Sbjct: 64  YDRFGEAGVSGAAAGYGDMGDMGGFADIFESIFS----GFGGVGAG--TSRRRTGPSRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLR+D+ LEF E+IFG EK+  ++HLETC  C G+GAK G+K R C TCGG GQV R  +
Sbjct: 118 DLRFDLKLEFREAIFGGEKQIRITHLETCTTCNGSGAKPGTKPRTCGTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVSVCP+C G+G+VI + C  C G G+ ++ K +K+ +P GV TG+ LRV  E
Sbjct: 178 TPFGSFTQVSVCPTCNGKGQVIEDKCETCGGNGQAQVTKKLKITIPAGVDTGTRLRVSNE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           GDAG +GGP GDLYVYL V+E P  +R+GI++ S + ISYL AI+G+ + V 
Sbjct: 238 GDAGQQGGPAGDLYVYLFVQEDPEFRREGINILSEVKISYLQAILGSRLMVN 289

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q2JW78|DNAJ_SYNJA Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/300 (53%), Positives = 204/300 (68%), Gaps = 22/300 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + +S +EIK AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSDD+ RA 
Sbjct: 4   DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRAR 63

Query: 138 YDQYGEAG----------VKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           YD++GEAG           +   G G  A      DLFE+FF    GG  G       +R
Sbjct: 64  YDRFGEAGLSGAAAAASGFQDFAGIGGFA------DLFESFFTNFAGGGVGY------SR 111

Query: 188 RRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGG 247
            R    +G+DLR+D+ LEF E+IFG EK+  +SHLE C VC G+GAK G+ +++C TCGG
Sbjct: 112 SRQGPVRGDDLRFDLKLEFLEAIFGGEKQIRISHLEVCPVCGGSGAKPGTDVKVCPTCGG 171

Query: 248 RGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
            GQV R  +TPFG F+QVS+CP+CGG G V+ E C  C+GEG  +  K +++ +P GV +
Sbjct: 172 AGQVRRATRTPFGNFTQVSICPTCGGAGRVLEEPCYNCNGEGLAQTTKKLRINIPAGVDS 231

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+ LRV GEGDAG RGGPPGDLYVYL VE  P  QRDG+ +FS + +SYL AI+G  V V
Sbjct: 232 GTRLRVSGEGDAGRRGGPPGDLYVYLFVEPDPDFQRDGLTIFSQVRVSYLQAILGAKVLV 291

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1

 Score =  304 bits (778), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 154/291 (52%), Positives = 192/291 (65%), Gaps = 5/291 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  ++IK AYR+LAR+YHPDVNKEPGA E FKEI+ AYE+LS+ + R  
Sbjct: 4   DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD++GEAGV     G          D+FET F     GF GM       RRR+  T+GED
Sbjct: 64  YDRFGEAGVSGGAAGFDPDNMGGFADIFETIFS----GFGGMGGQAT-ARRRTGPTRGED 118

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D  L+F E++FG EKE  + HLETC+ C G+GA+ G+  R C+TC G GQV R  +T
Sbjct: 119 LRLDFRLKFREAVFGGEKEIRIRHLETCQTCKGSGARPGTSSRTCTTCSGTGQVRRATRT 178

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G  LRV  EG
Sbjct: 179 PFGTFAQVSVCPTCDGAGEVIEEKCDVCGGSGRRQETKKLKITIPAGVDNGMKLRVAREG 238

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           DAG +GGPPGDL+VYL VE     QR+G D+ S I+ISY+ AI+G  +KV 
Sbjct: 239 DAGLKGGPPGDLFVYLTVETDAEFQREGNDIKSDITISYIQAILGCTIKVN 289

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1

 Score =  302 bits (773), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/290 (51%), Positives = 206/290 (71%), Gaps = 5/290 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y TLGV ++A    +K AYR+LARQYHPD+NKE GA E+FKEI  AYEVL D +KRA 
Sbjct: 3   DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRAR 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+GEAG+  + G           D+FETFF    G       +G RT+RR    +G+D
Sbjct: 63  YDQFGEAGLGGSAGMPDMGDMGGFADIFETFFSGFGG----PGSSGARTQRRGP-QQGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYD+ ++F++++FG E+E ++ HLETC+VC GTGAK G+    CSTCGG GQV R  +T
Sbjct: 118 LRYDLTIDFNQAVFGQEREIKIPHLETCDVCRGTGAKPGTGPTTCSTCGGAGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVS CP+C G G+VIS+ C+ C G+G  +++K +++ +P GV TG+ LRV GEG
Sbjct: 178 PFGSFTQVSDCPTCSGSGQVISDSCQSCGGQGVKQVRKKLRINIPAGVDTGTRLRVSGEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           +AGPRGGP GDLYV+L V+    ++RDG+++ S +++SYL AI+G  ++V
Sbjct: 238 NAGPRGGPSGDLYVFLKVKSHARLKRDGLNIHSEVNVSYLQAILGDTIEV 287

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|Q2JH49|DNAJ_SYNJB Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=dnaJ PE=3 SV=1

 Score =  300 bits (769), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 20/299 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + +S +EIK AYR+LAR+YHPDVNKEPGA E+FKEI+ AYEVLSD++ +A 
Sbjct: 4   DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRT---------RR 188
           YD++GEA           +        F+ F G  MGGF  + ++ F           R 
Sbjct: 64  YDRFGEA---------GLSGAAAAASGFQDFAG--MGGFADIFESFFTNFAGAGASYARS 112

Query: 189 RSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGR 248
           R    +G+DLR+D+ LEF E+IFG EK+  +SHLE C VC G+GAK G++++ C TCGG 
Sbjct: 113 RQGPVRGDDLRFDLKLEFLEAIFGGEKQIRISHLEVCNVCGGSGAKPGTEVKTCPTCGGS 172

Query: 249 GQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308
           GQV R  +TPFG F+QVSVCP+CGG G+V+ E C  C+GEG  +  K +++ +P GV +G
Sbjct: 173 GQVRRATRTPFGNFTQVSVCPTCGGSGQVLEEPCYNCNGEGLAQTTKKLRINIPAGVDSG 232

Query: 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           + LRV GEGDAG RGGPPGDLYVYL VE  P  QRDG+ + S + +SYL AI+G  V V
Sbjct: 233 TRLRVSGEGDAGRRGGPPGDLYVYLFVEPDPDFQRDGLTILSEVRVSYLQAILGAKVSV 291

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|Q5N0G1|DNAJ_SYNP6 Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1

 Score =  290 bits (743), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 152/302 (50%), Positives = 199/302 (65%), Gaps = 23/302 (7%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           + DYY  LGV + A   EIK AYR+LAR+YHPDVNKEPGA +KFKEI+ AYEVLS+ + R
Sbjct: 2   AADYYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPETR 61

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFR---------- 185
           A YDQ+G            +  +      F+ F    MGGF  + +T F           
Sbjct: 62  ARYDQFG-----------EAGVSGAGAAGFQDF--GDMGGFADIFETFFSGFGGMGGQQA 108

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
           + RR   T+GEDLR D+ L+F ++IFG EKE  ++H ETC  C G+GAK G++ + C+TC
Sbjct: 109 SARRRGPTRGEDLRLDLKLDFRDAIFGGEKEIRVTHEETCGTCQGSGAKAGTRPQTCTTC 168

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
           GG GQV R  +TPFG F+QVSVCP+C G G++I + C  C G GR+R  K +K+ +P GV
Sbjct: 169 GGAGQVRRATRTPFGSFTQVSVCPTCEGSGQMIVDKCDDCGGAGRLRRPKKLKINIPAGV 228

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV 365
            +G+ LRV  EGDAG RGGPPGDLYVYL V E    +R+GI+LFST++ISYL AI+G  +
Sbjct: 229 DSGTRLRVANEGDAGLRGGPPGDLYVYLFVSEDTQFRREGINLFSTVTISYLQAILGCSL 288

Query: 366 KV 367
           +V
Sbjct: 289 EV 290

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
449468934	505	PREDICTED: chaperone protein DnaJ-like [	0.915	0.667	0.820	1e-158
255553237	511	chaperone protein DNAj, putative [Ricinu	0.904	0.651	0.830	1e-158
356554947	489	PREDICTED: chaperone protein DnaJ-like i	0.961	0.723	0.771	1e-157
356554945	493	PREDICTED: chaperone protein DnaJ-like i	0.961	0.718	0.771	1e-157
357455281	496	Chaperone protein dnaJ [Medicago truncat	0.923	0.685	0.794	1e-156
224134931	492	predicted protein [Populus trichocarpa]	0.801	0.599	0.901	1e-155
1707657	498	DnaJ homologue [Pisum sativum]	0.942	0.696	0.772	1e-154
359482375	489	PREDICTED: chaperone protein DnaJ-like [	0.796	0.599	0.866	1e-151
297839937	492	hypothetical protein ARALYDRAFT_895995 [	0.902	0.674	0.751	1e-146
18412605	500	molecular chaperone Hsp40/DnaJ-like prot	0.907	0.668	0.742	1e-146

>gi|449468934|ref|XP_004152176.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] gi|449522377|ref|XP_004168203.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/339 (82%), Positives = 303/339 (89%), Gaps = 2/339 (0%)

Query: 29  GGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKS 88
           GGT LR HKNF ++   + +          +   SS  R G  VVCASGDYYATLG+PKS
Sbjct: 33  GGTQLRFHKNFLSVHSYSFNSSPSSPNSRFNKRVSSRRRLGL-VVCASGDYYATLGIPKS 91

Query: 89  ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148
           A+ KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA+YDQYGEAGVKS
Sbjct: 92  ANSKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKS 151

Query: 149 TVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 208
           TVGG SSAYTTNPFDLFETFFGPSMGGF GM+ TGFRTRR ST+TKGED+RYDI L  SE
Sbjct: 152 TVGG-SSAYTTNPFDLFETFFGPSMGGFGGMDPTGFRTRRSSTLTKGEDIRYDINLGSSE 210

Query: 209 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVC 268
           +IFG+EKEFELSHLETCEVCTGTG+K+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVC
Sbjct: 211 AIFGSEKEFELSHLETCEVCTGTGSKVGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVC 270

Query: 269 PSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGD 328
           P+CGG GEVIS++CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGPRGGPPGD
Sbjct: 271 PNCGGNGEVISDFCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVAGEGDAGPRGGPPGD 330

Query: 329 LYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           L+VYLDVEEIPGIQRDGI+L+STI+ISYLDAIMG+VVKV
Sbjct: 331 LFVYLDVEEIPGIQRDGINLYSTIAISYLDAIMGSVVKV 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553237|ref|XP_002517661.1| chaperone protein DNAj, putative [Ricinus communis] gi|223543293|gb|EEF44825.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/336 (83%), Positives = 305/336 (90%), Gaps = 3/336 (0%)

Query: 32  HLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASG 91
           HL SHK F++L L++    F     +SS++ SS  R+G  +  ASGDYYATLGVPKSA+ 
Sbjct: 48  HLWSHKKFSSLALTS-PLKFKTKTASSSSSSSSNNRYGPEI-NASGDYYATLGVPKSATS 105

Query: 92  KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
           KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD KR+MYD+YGEAGVKS VG
Sbjct: 106 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDNKRSMYDRYGEAGVKSAVG 165

Query: 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
           G SSAYTTNPFDLFETFFG SMGGFPG+ +TGF TRRRSTVTKGEDLRYDI LEFSE+IF
Sbjct: 166 GASSAYTTNPFDLFETFFGSSMGGFPGV-ETGFGTRRRSTVTKGEDLRYDITLEFSEAIF 224

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           GAEKEF+LSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVCP+C
Sbjct: 225 GAEKEFDLSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPTC 284

Query: 272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYV 331
           GGEGEVISEYCRKCSGEGRIR++KNIKVKVPPGVSTGSILRV GEGDAGPRGGPPGDL+V
Sbjct: 285 GGEGEVISEYCRKCSGEGRIRVRKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPPGDLFV 344

Query: 332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           YLDV+EI GIQRDGI+L STI+ISYLDAI+G VVKV
Sbjct: 345 YLDVQEISGIQRDGINLNSTITISYLDAILGAVVKV 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554947|ref|XP_003545802.1| PREDICTED: chaperone protein DnaJ-like isoform 2 [Glycine max]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/363 (77%), Positives = 311/363 (85%), Gaps = 9/363 (2%)

Query: 5   ATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSS 64
            TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S 
Sbjct: 3   VTTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSP 53

Query: 65  TYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA 124
           T R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISA
Sbjct: 54  TRRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISA 113

Query: 125 AYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF 184
           AYEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF
Sbjct: 114 AYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGF 173

Query: 185 RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICST 244
            TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CST
Sbjct: 174 GTRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCST 233

Query: 245 CGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG 304
           CGGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPG
Sbjct: 234 CGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPG 293

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           VS+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G V
Sbjct: 294 VSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAV 353

Query: 365 VKV 367
           VKV
Sbjct: 354 VKV 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554945|ref|XP_003545801.1| PREDICTED: chaperone protein DnaJ-like isoform 1 [Glycine max]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/363 (77%), Positives = 311/363 (85%), Gaps = 9/363 (2%)

Query: 5   ATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSS 64
            TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S 
Sbjct: 3   VTTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSP 53

Query: 65  TYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISA 124
           T R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISA
Sbjct: 54  TRRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISA 113

Query: 125 AYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF 184
           AYEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF
Sbjct: 114 AYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGF 173

Query: 185 RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICST 244
            TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CST
Sbjct: 174 GTRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCST 233

Query: 245 CGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG 304
           CGGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPG
Sbjct: 234 CGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPG 293

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           VS+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G V
Sbjct: 294 VSSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAV 353

Query: 365 VKV 367
           VKV
Sbjct: 354 VKV 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455281|ref|XP_003597921.1| Chaperone protein dnaJ [Medicago truncatula] gi|355486969|gb|AES68172.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/346 (79%), Positives = 302/346 (87%), Gaps = 6/346 (1%)

Query: 24  SSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGR--SVVCASGDYYA 81
           S F AGG HLRSH NF    LS  S PF  +  NS+   SS  R  R  +V  AS DYY+
Sbjct: 18  SCFCAGGIHLRSHNNF----LSIHSSPFPSTFSNSNTKFSSGTRPKRFHTVFAASSDYYS 73

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQY
Sbjct: 74  TLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQY 133

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKS+VGGGSSAY TNPFDLFETFFGP+MGGF  M+ +GF TRRRSTVTKGED+RYD
Sbjct: 134 GEAGVKSSVGGGSSAYATNPFDLFETFFGPNMGGFSTMDPSGFGTRRRSTVTKGEDIRYD 193

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
             LEFSE+IFG EKEFEL HLETC+ CTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFGL
Sbjct: 194 FSLEFSEAIFGTEKEFELFHLETCDACTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGL 253

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVSVCP+CGG+GEVISE CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGP
Sbjct: 254 FSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVTGEGDAGP 313

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           RGGPPGDLYVYL+V EIPGIQRD ++L STISISYL+AI+G+VVKV
Sbjct: 314 RGGPPGDLYVYLNVLEIPGIQRDDVNLRSTISISYLEAILGSVVKV 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134931|ref|XP_002327525.1| predicted protein [Populus trichocarpa] gi|222836079|gb|EEE74500.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/295 (90%), Positives = 280/295 (94%)

Query: 73  VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132
           V ASGDYYATLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEIS+AYEVLSDD
Sbjct: 65  VYASGDYYATLGVPKSATSKEIKAAYRRLARQYHPDVNKEPGATEKFKEISSAYEVLSDD 124

Query: 133 KKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           KKR++YDQYGEAGVKSTVGG SSAYTTNPFDLFETFFG SMGGFPGM QTGF+TRRRSTV
Sbjct: 125 KKRSLYDQYGEAGVKSTVGGPSSAYTTNPFDLFETFFGASMGGFPGMEQTGFKTRRRSTV 184

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
           TKGED+RYDI LEFSE+IFGAEKEFELSHLETCEVC GTGAKMGSKMRICSTCGGRGQVM
Sbjct: 185 TKGEDIRYDISLEFSEAIFGAEKEFELSHLETCEVCAGTGAKMGSKMRICSTCGGRGQVM 244

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           RT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KKNIKVKVPPGV  GSILR
Sbjct: 245 RTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRIRVKKNIKVKVPPGVGAGSILR 304

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           V  EGDAGPRGGP GDLYVYLDVEEI GIQRDGI+L STISISY DAI+GTVVKV
Sbjct: 305 VAREGDAGPRGGPLGDLYVYLDVEEIRGIQRDGINLTSTISISYADAILGTVVKV 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1707657|emb|CAA96305.1| DnaJ homologue [Pisum sativum]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/347 (77%), Positives = 298/347 (85%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYY 80
           ++ S F A G H RSH             PF  +  NS++  S+  +   +V  AS DYY
Sbjct: 14  TTHSCFCASGIHFRSHTTTNNFLSIHSPSPFPSTFSNSNSKFSARRKRFHTVFAASSDYY 73

Query: 81  ATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           ATLGVPKSA+ K+IKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQ
Sbjct: 74  ATLGVPKSATVKDIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQ 133

Query: 141 YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRY 200
           YGEAGVKS+VGGGSSAY TNPFDLFETFFG +MGGF GM+ TGF TRRRSTVTKGED+RY
Sbjct: 134 YGEAGVKSSVGGGSSAYATNPFDLFETFFGSNMGGFGGMDPTGFGTRRRSTVTKGEDIRY 193

Query: 201 DIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFG 260
           D  LEFSE+IFGAEKEFEL HLETCEVCTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFG
Sbjct: 194 DFSLEFSEAIFGAEKEFELFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFG 253

Query: 261 LFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG 320
           LFSQVSVCP+CGG+GEVISE CRKCSG GRIR+KKN+KVKVPPGVS+GSILRV GEGDAG
Sbjct: 254 LFSQVSVCPNCGGDGEVISENCRKCSGAGRIRVKKNMKVKVPPGVSSGSILRVTGEGDAG 313

Query: 321 PRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           PRGGPPGDLYVYLDV EIPGIQRD I+L STISI+YLDAI+G+VVKV
Sbjct: 314 PRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISITYLDAILGSVVKV 360

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482375|ref|XP_002265060.2| PREDICTED: chaperone protein DnaJ-like [Vitis vinifera] gi|297743480|emb|CBI36347.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/293 (86%), Positives = 279/293 (95%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           AS DYY+TLGVPKSA+ KEIKAAYRKLARQYHPDVNK+PGATEKFKEISAAYEVLSDDKK
Sbjct: 67  ASSDYYSTLGVPKSANSKEIKAAYRKLARQYHPDVNKQPGATEKFKEISAAYEVLSDDKK 126

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           RA+YDQ+GEAGVKS VGG + AYTTNPFDLFETFFGPSMGGF GM+Q GFRTRRR+TV+K
Sbjct: 127 RALYDQFGEAGVKSGVGGQAGAYTTNPFDLFETFFGPSMGGFSGMDQAGFRTRRRTTVSK 186

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GED+RYD+ L+FSE+IFGAEKEFELSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT
Sbjct: 187 GEDIRYDMTLKFSEAIFGAEKEFELSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRT 246

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
           +QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KK+IKVKVPPGVS GSILRV 
Sbjct: 247 EQTPFGLFSQVSVCPTCGGDGEVISEYCRKCSGEGRIRVKKDIKVKVPPGVSKGSILRVA 306

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GEGDAG RGGPPGDL+VYLDVEEIP IQRDGI+L ST+++SYLDAI+G VVKV
Sbjct: 307 GEGDAGLRGGPPGDLFVYLDVEEIPEIQRDGINLCSTVTVSYLDAILGAVVKV 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839937|ref|XP_002887850.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata] gi|297333691|gb|EFH64109.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/346 (75%), Positives = 293/346 (84%), Gaps = 14/346 (4%)

Query: 22  SSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYA 81
           S SS   GGT+LR HK+F +L+ S+   P+   +  S             V  ASGDYYA
Sbjct: 26  SLSSNFDGGTNLRYHKSFLSLSSSS---PYRNRRCRS-----------LVVFAASGDYYA 71

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGAT+KFKEISAAYEVLSD++KRA+YDQY
Sbjct: 72  TLGVPKSANNKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDEQKRALYDQY 131

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKSTVGG S  YTTNPFDLFETFFG SMGGFPG++Q  F   RRS VTKGEDLRYD
Sbjct: 132 GEAGVKSTVGGASGTYTTNPFDLFETFFGASMGGFPGVDQADFGRTRRSRVTKGEDLRYD 191

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
           I LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+
Sbjct: 192 ITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGM 251

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVS+CP+CGG+GEVISE CRKCSGEGR+R KK+IKVK+PPGVS GSILRV GEGD+GP
Sbjct: 252 FSQVSICPNCGGDGEVISENCRKCSGEGRVRTKKSIKVKIPPGVSAGSILRVAGEGDSGP 311

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           RGGPPGDLYVYLDVE++ GIQRDGI+L ST+SISYLDAI+G VVKV
Sbjct: 312 RGGPPGDLYVYLDVEDVRGIQRDGINLLSTLSISYLDAILGAVVKV 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412605|ref|NP_565227.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699481|ref|NP_849910.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699483|ref|NP_849911.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|110739057|dbj|BAF01446.1| hypothetical protein [Arabidopsis thaliana] gi|332198224|gb|AEE36345.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198225|gb|AEE36346.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198226|gb|AEE36347.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/350 (74%), Positives = 297/350 (84%), Gaps = 16/350 (4%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADS-CPFGGSKLNSSNARSSTYRFGRSVV--CASG 77
           S+ S+F  GG++ R HK+F +L+ S+ S  P+               R GRS+V    SG
Sbjct: 28  SNFSAFSDGGSNFRYHKSFLSLSSSSSSSTPY-------------RNRRGRSLVVFATSG 74

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYATLGV KSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+
Sbjct: 75  DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRAL 134

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQYGEAGVKSTVGG S  YT+NPFDLFETFFG SMGGFPGM+Q  F   RRS VTKGED
Sbjct: 135 YDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGED 194

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYDI LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QT
Sbjct: 195 LRYDITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQT 254

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG+FSQVS+CP+CGG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV GEG
Sbjct: 255 PFGMFSQVSICPNCGGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEG 314

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           D+GPRGGPPGDLYVYLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKV
Sbjct: 315 DSGPRGGPPGDLYVYLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKV 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.896	0.66	0.693	6.7e-120
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.855	0.704	0.478	1.2e-72
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.847	0.705	0.479	3.2e-72
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.820	0.584	0.445	1.3e-70
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.769	0.762	0.395	2.1e-52
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.779	0.753	0.404	4.4e-52
TIGR_CMR|DET_1398	356	DET_1398 "co-chaperone protein	0.760	0.786	0.375	1.9e-51
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.75	0.739	0.427	8.3e-51
UNIPROTKB|P95830	378	dnaJ "Chaperone protein DnaJ"	0.769	0.748	0.375	2.2e-50
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.758	0.742	0.386	3.2e-49

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 233/336 (69%), Positives = 268/336 (79%)

Query:    38 NFAALTLSADSCPFGGS--KLNSSNARSSTYRF--GRSVV--CASGDYYATLGVPKSASG 91
             NF+A +    +  +  S   L+SS++ S+ YR   GRS+V    SGDYYATLGV KSA+ 
Sbjct:    29 NFSAFSDGGSNFRYHKSFLSLSSSSSSSTPYRNRRGRSLVVFATSGDYYATLGVSKSANN 88

Query:    92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
             KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+YDQYGEAGVKSTVG
Sbjct:    89 KEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRALYDQYGEAGVKSTVG 148

Query:   152 GGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
             G S  YT+NPFDLFET            +Q  F   RRS VTKGEDLRYDI LE SE+IF
Sbjct:   149 GASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGEDLRYDITLELSEAIF 208

Query:   212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
             G+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+FSQVS+CP+C
Sbjct:   209 GSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSICPNC 268

Query:   272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYV 331
             GG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV              DLYV
Sbjct:   269 GGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEGDSGPRGGPPGDLYV 328

Query:   332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
             YLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKV
Sbjct:   329 YLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKV 364

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 153/320 (47%), Positives = 198/320 (61%)

Query:    48 SCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHP 107
             S PF    L   +  + + R  R  V A  D+Y+ LGV K+A+  EIK+AYRKLAR YHP
Sbjct:    57 SLPF--LSLTGVSPNTHSRRGARFTVRADTDFYSVLGVSKNATKAEIKSAYRKLARSYHP 114

Query:   108 DVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFET 167
             DVNK+ GA +KFKEIS AYE+LSDD+KR++YD+YGEAGVK    GG   Y+ NPFDLFE+
Sbjct:   115 DVNKDAGAEDKFKEISNAYEILSDDEKRSLYDRYGEAGVKGAGMGGMGDYS-NPFDLFES 173

Query:   168 XXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227
                            G R  R S    GED  Y ++L F E++FG EKE E+S LE+C  
Sbjct:   174 LFEGMGGMGGMGGGMGSRGSR-SRAIDGEDEYYSLILNFKEAVFGIEKEIEISRLESCGT 232

Query:   228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287
             C G+GAK G+K   C TCGG+GQV+ + +TP G+F QV  C  C G GE IS+ C  CSG
Sbjct:   233 CNGSGAKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE-ISKPCGACSG 291

Query:   288 EGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGID 347
             +GR+R  K I +KVP GV +GS LRV              DL+  ++V   P ++RD  +
Sbjct:   292 DGRVRRTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFAVIEVIPDPVLKRDDTN 351

Query:   348 LFSTISISYLDAIMGTVVKV 367
             +  T  ISY+DAI+GT +KV
Sbjct:   352 ILYTCKISYVDAILGTTLKV 371

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 155/323 (47%), Positives = 199/323 (61%)

Query:    45 SADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQ 104
             S  S PF      S N      R  R  V A  DYY+ LGV K+A+  EIK+AYRKLAR 
Sbjct:    54 SHGSLPFLSMTGMSRNMHPPR-RGSRFTVRADADYYSVLGVSKNATKAEIKSAYRKLARN 112

Query:   105 YHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
             YHPDVNK+PGA EKFKEIS AYEVLSDD+K+++YD+YGEAG+K   G G+  ++ NPFDL
Sbjct:   113 YHPDVNKDPGAEEKFKEISNAYEVLSDDEKKSLYDRYGEAGLKGAAGFGNGDFS-NPFDL 171

Query:   165 FETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLET 224
             F++               G     RS    G+D  Y ++L F E++FG EKE E+S LE+
Sbjct:   172 FDSLFEGFGG--------GMGRGSRSRAVDGQDEYYTLILNFKEAVFGMEKEIEISRLES 223

Query:   225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
             C  C G+GAK G+K   C+TCGG+GQV+   +TP G+F QV  C SC G GE IS  C  
Sbjct:   224 CGTCEGSGAKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVMTCSSCNGTGE-ISTPCGT 282

Query:   285 CSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRD 344
             CSG+GR+R  K I +KVP GV +GS LRV              DL+V ++V   P ++RD
Sbjct:   283 CSGDGRVRKTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFVVIEVIPDPILKRD 342

Query:   345 GIDLFSTISISYLDAIMGTVVKV 367
               ++  T  ISY+DAI+GT +KV
Sbjct:   343 DTNILYTCKISYIDAILGTTLKV 365

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 138/310 (44%), Positives = 204/310 (65%)

Query:    63 SSTYRFGRSVVCASG-DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121
             S  YR  R +  A+G D+Y+TL V ++A+ +EIK++YRKLAR+YHPD+NK PGA +KFK+
Sbjct:    48 SGGYR-RRVITMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQ 106

Query:   122 ISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYT-TNPFDLFETXXXXXXXXXXXXN 180
             ISAAYEVLSD++KR+ YD++GEAG++    G        +PFDL+               
Sbjct:   107 ISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGGMG 166

Query:   181 QTG---FRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237
             ++G   F    + ++    D+RYD+ L F E++FG ++E E+S+LETC+ C GTGAK  +
Sbjct:   167 ESGGMGFDFMNKRSLDL--DIRYDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSN 224

Query:   238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297
              ++ CS+C G+G+VM + +TPFG+ SQVS C  CGGEG+ I++ CRKC G GR+R +K +
Sbjct:   225 SIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGNGRLRARKKM 284

Query:   298 KVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYL 357
              V VPPGVS  + +R+              DL++ L V+E  GI+R+G++L+S I+I + 
Sbjct:   285 DVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFT 344

Query:   358 DAIMGTVVKV 367
             DAI+G   KV
Sbjct:   345 DAILGATTKV 354

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 115/291 (39%), Positives = 151/291 (51%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ K AS  EIK AYR+LA++YHPDV+KE  A EKFKE+  AYEVLSDD+KRA 
Sbjct:     5 DYYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQ 64

Query:   138 YDQYGEAGVKSTVGG-GSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGE 196
             YDQ+G AG     GG G        F  FE                G R R  +   +G 
Sbjct:    65 YDQFGHAGANQGFGGFGGGGDFGGGFG-FEDIFSSFFGGG------GGRRRDPNAPRQGA 117

Query:   197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
             DL+Y + LEF E+IFG E   E+   + C+ C G+GAK G+    C  C G GQV     
Sbjct:   118 DLQYQVTLEFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQN 177

Query:   257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXX 316
             TPFG       C  C G G++I E C  C G G++R +K I VK+P G+  G  +RV   
Sbjct:   178 TPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSGKVRKRKKINVKIPAGIDNGQQIRVSGK 237

Query:   317 XXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
                        DLYV + V      +R+G  +   + +++    +G  V+V
Sbjct:   238 GEAGVNGGPAGDLYVVVHVRSHEFFEREGDHIICEMPLTFAQMALGAEVEV 288

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 119/294 (40%), Positives = 165/294 (56%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV ++A+ +EIK AYRKLAR+YHPDVNK+ P A EKFKEI+ AYEVLSD +KRA
Sbjct:     4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query:   137 MYDQYGEAGVKSTV---GGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVT 193
              YDQ+G AGV       GG       N  D+F                +G R  R+  V 
Sbjct:    64 RYDQFGHAGVDGNFAGQGGFGGGAGINFEDIFSGFGGFGDLFDMVFG-SG-RKARQGPVP 121

Query:   194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
              G+D+   + L   E++FG EKE  ++  ETC  C G GA+ G+ +  C TC GRGQ+ +
Sbjct:   122 -GDDIEAVLELTLEEAVFGGEKELRVTRTETCGHCHGNGAEPGTPIITCPTCQGRGQIHQ 180

Query:   254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
               +T FG   +  VC +C GEG++    CR+C G G +R  ++I VK+PPG+  G  LR+
Sbjct:   181 EVKTLFGRMVRSQVCSTCRGEGKIPKTPCRECGGSGLVRKTRSITVKIPPGIDHGHRLRI 240

Query:   314 VXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
                           DLYVY+ ++     +R+ I L     IS++ A +G  V++
Sbjct:   241 AGGGEAGRFGGPPGDLYVYIKIKPHKLFKREDIHLKLEKEISFVQAALGAKVEI 294

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|DET_1398 DET_1398 "co-chaperone protein DnaJ" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 109/290 (37%), Positives = 162/290 (55%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ +SAS ++IK A+RK+A ++HPD N E GA EKFKEI+ AYEVLS+ +KRA 
Sbjct:     6 DYYEVLGIERSASDEDIKKAFRKMAMKHHPDRNHEDGAAEKFKEINEAYEVLSNPEKRAA 65

Query:   138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGED 197
             YD++G          GS A+    F+ F+               T  ++ +R    +G D
Sbjct:    66 YDRFG-------FSAGSDAFGQGGFENFDFGGLGSIFETFFGGAT--QSAKRGP-RRGPD 115

Query:   198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
             + YDI +   E+  G EKE     LE C  C+GTGAK G+ +  C+ C G GQV +  ++
Sbjct:   116 MSYDIRITLEEAATGVEKEITTERLEYCSECSGTGAKAGTSLVKCTNCNGTGQVYQVQKS 175

Query:   258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXX 317
              FG F+ V+ CP C GEG +I E C KC G G+  +K+ ++VK+P GV+ G+ +R+    
Sbjct:   176 VFGRFTSVTPCPKCRGEGTIIGEPCAKCRGTGKEYVKRTVQVKIPAGVADGNQIRLNGYG 235

Query:   318 XXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
                       D+Y+ + +      +RDG D+   + I++  A +GT V V
Sbjct:   236 GVGDKGASAGDVYINVSIASHADFKRDGDDVIYELEINFAQAALGTEVNV 285

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 126/295 (42%), Positives = 163/295 (55%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV K+AS  EIK A+RKLA QYHPD N +   A EKFKEI+ AYEVLSD +KRA
Sbjct:     7 DYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRA 66

Query:   137 MYDQYGEAGVKST--VGGGSSAYTTN-PF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
              YDQ+G AGV +    GGG   +    PF D+F                 G R RR    
Sbjct:    67 QYDQFGHAGVGAGGFSGGGFGGFGAGTPFGDIF----GDIFGDIFGGRPRGSRGRR---- 118

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
               G+DL+Y++ L F E+ FGAEKE ++ + + C  C G+GAK G++ ++C TC G GQV 
Sbjct:   119 --GDDLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQV- 175

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
             R  Q   G FS    C  C GEG V+   C  C G G IR  K + VKVP GV TG+ L+
Sbjct:   176 RFQQ---GFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLK 232

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
             +              DLYV + V E P   R+  D+   I +S++ A +G  ++V
Sbjct:   233 LSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEV 287

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P95830 dnaJ "Chaperone protein DnaJ" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 110/293 (37%), Positives = 154/293 (52%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             ++Y  LGV K+AS  EIK AYRKL+++YHPD+NKEPGA +K+KE+  AYE LSDD+KRA 
Sbjct:     5 EFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAA 64

Query:   138 YDQYGEAGVKSTVGG--GSSAYT-TNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTK 194
             YDQYG AG     GG  G   +     F  FE                G  +R  +   +
Sbjct:    65 YDQYGAAGANGGFGGAGGFGGFNGAGGFGGFEDIFSSFFGG-------GGSSRNPNAPRQ 117

Query:   195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
             G+DL+Y + L F E+IFG EKE +      C  C G+GAK G+    C  C G G +   
Sbjct:   118 GDDLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVD 177

Query:   255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
              QTP G+  +   C  C G G+ I   C  C G G  +   ++ VK+P GV TG  +R+ 
Sbjct:   178 TQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLA 237

Query:   315 XXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
                          DLYV + VE     +R+G  +F  ++++++ A +G  V +
Sbjct:   238 GQGEAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDI 290

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 114/295 (38%), Positives = 162/295 (54%)

Query:    75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
             A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct:     2 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 61

Query:   134 KRAMYDQYGEAGVKST-VGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
             KRA YDQYG A  +   +GGG      +  D+F                 G R R+R+  
Sbjct:    62 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG--------GGRGRQRAA- 112

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
              +G DLRY++ L   E++ G  KE  +  LE C+VC G+GAK G++ + C TC G GQV 
Sbjct:   113 -RGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV- 170

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                Q   G F+    CP C G G +I + C KC G GR+   K + VK+P GV TG  +R
Sbjct:   171 ---QMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIR 227

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
             +              DLYV + V++ P  +R+G +L+  + I++  A +G  ++V
Sbjct:   228 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEV 282

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0JW23	DNAJ_MICAN	No assigned EC number	0.5292	0.7771	0.7647	yes	no
B1WVR2	DNAJ_CYAA5	No assigned EC number	0.5238	0.7744	0.7579	yes	no
Q2JH49	DNAJ_SYNJB	No assigned EC number	0.5150	0.7581	0.7081	yes	no
Q7VEJ6	DNAJ_PROMA	No assigned EC number	0.5137	0.7744	0.7539	yes	no
B7KEJ8	DNAJ_CYAP7	No assigned EC number	0.5631	0.7798	0.7653	yes	no
Q7NDG8	DNAJ_GLOVI	No assigned EC number	0.5326	0.7880	0.7571	yes	no
B7JY68	DNAJ_CYAP8	No assigned EC number	0.5238	0.7826	0.768	yes	no
B0CAZ0	DNAJ_ACAM1	No assigned EC number	0.5342	0.7690	0.7566	yes	no
Q2JW78	DNAJ_SYNJA	No assigned EC number	0.5333	0.7554	0.7055	yes	no
Q8DKR7	DNAJ_THEEB	No assigned EC number	0.5454	0.7581	0.7479	yes	no
Q7V9C8	DNAJ_PROMM	No assigned EC number	0.5172	0.7771	0.7566	yes	no
Q8YUA5	DNAJ_NOSS1	No assigned EC number	0.5205	0.7826	0.7659	yes	no
Q114R3	DNAJ_TRIEI	No assigned EC number	0.5326	0.7744	0.7620	yes	no
B8HLD2	DNAJ_CYAP4	No assigned EC number	0.5239	0.7744	0.7620	yes	no
B1XQF6	DNAJ_SYNP2	No assigned EC number	0.5255	0.7853	0.7645	yes	no
Q5N0G1	DNAJ_SYNP6	No assigned EC number	0.5033	0.7581	0.7420	yes	no
B2J3J3	DNAJ_NOSP7	No assigned EC number	0.5189	0.7771	0.7626	yes	no
Q3MG81	DNAJ_ANAVT	No assigned EC number	0.5205	0.7826	0.7659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-143
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-140
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-119
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-113
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	3e-97
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-96
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-91
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-90
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-89
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-88
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	3e-88
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-87
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-83
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-82
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	7e-81
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-80
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-79
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-78
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-76
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-74
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	6e-73
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-72
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	9e-70
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-66
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-65
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	7e-59
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-57
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	6e-47
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-44
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-35
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-34
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	7e-33
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	7e-29
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-27
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	8e-27
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	2e-25
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-25
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-22
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	1e-19
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	4e-12
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-11
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	4e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	8e-11
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	6e-07
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	3e-06
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	1e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	1e-05
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	7e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	3e-04
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	3e-04
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	6e-04
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	0.001
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.003

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  410 bits (1056), Expect = e-143
 Identities = 152/293 (51%), Positives = 187/293 (63%), Gaps = 8/293 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV K AS +EIK AYRKLA++YHPD NK+  A EKFKEI+ AYEVLSD +KRA 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 138 YDQYGEAGVKSTVGGGSSAY---TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           YDQ+G AG     GGG   +       F  F   FG   GG  G        RRRS   +
Sbjct: 61  YDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGG-----SGRRRRSGPRR 115

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GEDLRYD+ L F E++FG EKE E+   E+CE C GTGAK G+  + C TCGG GQV R 
Sbjct: 116 GEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ 175

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
             TPFG F Q   CP+CGGEG++I E C  C G+GR++ +K I VK+P GV TG  LRV 
Sbjct: 176 QGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+G+AG  GGP GDLYV + V+     +RDG DL+  + IS+  AI+G  ++V
Sbjct: 236 GKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEV 288

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  403 bits (1038), Expect = e-140
 Identities = 162/291 (55%), Positives = 199/291 (68%), Gaps = 5/291 (1%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
            DYY  LGV + A   E+K AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSD + RA
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQ+GEAGV    G           D+FETFF     GF G    G R RRR    +G+
Sbjct: 63  RYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFS----GFGGAGGQGGRRRRRGP-QRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRYD+ L+F E+IFG EKE  + HLETCE C G+GAK G+    CSTCGG GQV R  +
Sbjct: 118 DLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVS CP+C G G+VI + C  C G+G  ++ K +K+ +P GV TG+ LRV GE
Sbjct: 178 TPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GDAG RGGPPGDLYVYL V+  P  +RDGI++ S I ISYL AI+G  ++V
Sbjct: 238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEV 288

Length = 374

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  349 bits (898), Expect = e-119
 Identities = 136/294 (46%), Positives = 184/294 (62%), Gaps = 15/294 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K AS +EIK AYRKLA++YHPD N  +  A EKFKEI+ AYEVLSD +KRA
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGS--SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            YDQ+G AG K+   GG     +  +  D+FE FFG   GG       G   RR +   +
Sbjct: 65  AYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFG---GG-------GGGRRRPNRPRR 114

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G DLRY++ +   E++FG +KE  ++   TC  C G+GAK G+  + C TC G GQV   
Sbjct: 115 GADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTV 174

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            +T F  FS    CP+C G G++I + C KC G+GR++ KK+I V +P GV  G  +R+ 
Sbjct: 175 QRTGF--FSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLS 232

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           GEG+AGP GGP GDLYV++ V+  P  +RDG DL+  + IS+ +A +G  ++V 
Sbjct: 233 GEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVP 286

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  334 bits (858), Expect = e-113
 Identities = 133/291 (45%), Positives = 174/291 (59%), Gaps = 13/291 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV ++AS  EIK AYRKLA +YHPD N  +  A EKFKEI  AYEVLSD +KRA
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQYG A  +   GGG         D+F   FG   GG  G          R    +G 
Sbjct: 65  AYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRG--------GGRQRARRGA 116

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRY++ +   E++ G  KE  +  L TC+ C G+GAK G+  + C TC G GQV R  Q
Sbjct: 117 DLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV-RMQQ 175

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G F+    CP+C G G++I + C+KC G+GR+  +K + VK+P GV TG  +R+ GE
Sbjct: 176 ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGE 232

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+AG RGGP GDLYV + V+E P  +RDG DL+  + IS+  A +G  ++V
Sbjct: 233 GEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEV 283

Length = 371

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  293 bits (751), Expect = 3e-97
 Identities = 139/297 (46%), Positives = 176/297 (59%), Gaps = 20/297 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV KSAS  EIK AYRKL+++YHPD+NKE GA EKFKEIS AYEVLSDD+KRA 
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRRRS 190
           YDQ+G AG     GGG   +    F       D+F +FFG            G R R  +
Sbjct: 65  YDQFGHAGPNQGFGGG--GFGGGDFGGGFGFEDIFSSFFG-----------GGGRRRDPN 111

Query: 191 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250
              +G DL+Y + L F E++FG EKE E+   ETC+ C G+GAK G+    CS CGG GQ
Sbjct: 112 APRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ 171

Query: 251 VMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310
           V     TPFG       CP C G G+ I E C  C G+G++R +K I VK+P GV  G  
Sbjct: 172 VSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ 231

Query: 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           +RV GEG+ G  GGP GDLYV   V      +RDG D++  + +++  A +G  ++V
Sbjct: 232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEV 288

Length = 376

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  291 bits (747), Expect = 1e-96
 Identities = 143/296 (48%), Positives = 182/296 (61%), Gaps = 21/296 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV + AS +EIK +YRKLA +YHPD N  PG   A E FKE + AYEVLSD KK
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PGDKEAEELFKEAAEAYEVLSDPKK 62

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           R +YDQYG  G+  T   G S +    + F D+FE FFG   G          R R R+ 
Sbjct: 63  RGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGR---------RGRSRTA 113

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
           V  G DLRYD+ L F E+ FG EKE  +  LETCE C G+G + G+    C  CGG GQV
Sbjct: 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQV 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            ++     G FS  + CP C G G+VI   C+ C G+GR+R+ K ++VK+P GV TGS L
Sbjct: 174 TQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           R+ GEG+AG RGGPPGDLYV+L VE     +RDG D+   + IS++ A +G  ++V
Sbjct: 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEV 285

Length = 366

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  277 bits (710), Expect = 7e-91
 Identities = 131/308 (42%), Positives = 181/308 (58%), Gaps = 31/308 (10%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV ++A+ +EIK AYR+LA++YHPD+N  PG   A +KFKEI+ AYE+LSD +K
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PGDKEAEQKFKEINEAYEILSDPQK 63

Query: 135 RAMYDQYGEA----GVKSTVGGGSSAYTTNPFD--------LFETFFGPSMGGFPGMNQT 182
           RA YDQ+G A    G     G G   +    FD        +FE  FG            
Sbjct: 64  RAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFG-----------D 112

Query: 183 GFRTRRRSTVT---KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
            F T RR   T   KG D+RYD+ L F E+ FG EKE E+   E C+VC G+GAK GSK 
Sbjct: 113 FFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKP 172

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C  C G GQV     TPFG    +  C  C GEG++I++ C KC G GRIR ++ IKV
Sbjct: 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKV 232

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDA 359
            +P G+  G ++ + GEG+ G +GGP GDLY+ + V+  P  +R+G +++  + I++ DA
Sbjct: 233 NIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDA 292

Query: 360 IMGTVVKV 367
            +G  +++
Sbjct: 293 ALGGEIEI 300

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  274 bits (703), Expect = 7e-90
 Identities = 128/294 (43%), Positives = 169/294 (57%), Gaps = 11/294 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           +YY  LGV K AS  EIK AYRKL+++YHPD+NKEPGA EK+KE+  AYE LSD +KRA 
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 138 YDQYGEAGVKSTVGGGSSAY----TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YDQYG AG     GGG+  +     +  F  FE  F    GG       G   R  +   
Sbjct: 65  YDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGG-------GGARRNPNAPR 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G+DL+Y + L+F E+IFG EKE   +   TC  C G+GAK G+    C  C G G +  
Sbjct: 118 QGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITV 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
             QTP G+  +   C  C G G+ I E C+ C G G  +    + VK+P GV TG  +R+
Sbjct: 178 DTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRL 237

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            G+G+AG  GGP GDLYV   VE     +RDG  ++ T+ IS++ A +G  V+V
Sbjct: 238 QGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEV 291

Length = 380

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  272 bits (697), Expect = 6e-89
 Identities = 131/294 (44%), Positives = 169/294 (57%), Gaps = 17/294 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ K AS ++IK AYRKLA +YHPD NKEP A EKFKEIS AY VLSD +KRA 
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YD++G AG+ +        +    F    D+FE FFG            G   R R    
Sbjct: 66  YDRFGHAGIDNQYSA-EDIFRGADFGGFGDIFEMFFG------------GGGRRGRMGPR 112

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G DLRYD+ +   E+ FG  K+ ++   E C  C+GTGAK G+  + C TCGG GQV  
Sbjct: 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTT 172

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
           T  TP G F   + C +C G G+VI   C  CSG G++R  + I V VP G  +G  L++
Sbjct: 173 TRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL 232

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            GEG+AG  G P GDLY+ L V+E    +R G D+ S I IS+  A +G  + V
Sbjct: 233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMV 286

Length = 377

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  271 bits (695), Expect = 1e-88
 Identities = 135/301 (44%), Positives = 179/301 (59%), Gaps = 17/301 (5%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           AS DYY  LG+ K AS  EIK A+RKLA +YHPD NK    A EKFKEI+ AY+VLSD +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 134 KRAMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRT 186
           K+A YDQ+G A      G GS  +    F       D+F++FFG   GGF      G  +
Sbjct: 62  KKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFG---GGF------GSSS 112

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           RRR+   +G D+ Y I L F E++FG EKE  ++  E CE C GTGAK G+  + C  CG
Sbjct: 113 RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCG 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ+     TP G F   + C  CGG G+VI + C KC G+G++R  + IKV VP GV 
Sbjct: 173 GTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
           TG+++ + G+G+ G  GGP GDLY+ + V      +R G D++    IS+  A +GT +K
Sbjct: 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIK 292

Query: 367 V 367
           V
Sbjct: 293 V 293

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  270 bits (692), Expect = 3e-88
 Identities = 130/291 (44%), Positives = 175/291 (60%), Gaps = 6/291 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A  KEIK AYRKLAR+YHPDV++E GA EKFKEIS AY VLSDD+KR  
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGM-NQTGFRTRRRSTVTKGE 196
           YDQ+G AG+     G S     N  + FE  F     G   + +  GF    R    +G 
Sbjct: 66  YDQFGHAGMD----GFSQEDIFNNIN-FEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGA 120

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           D+  ++ +   E+  G EK+ ++ H + C VC G+ A+ GS+++ C TCGG GQV +   
Sbjct: 121 DIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRN 180

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           T  G    V+ CP C GEG+++ + C  C G+G +R  K I VK+P GV TGS LRV GE
Sbjct: 181 TILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGE 240

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+ G RGG PGDLYV + V+     +R+G +L+    IS++ A +G  V V
Sbjct: 241 GEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDV 291

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  268 bits (686), Expect = 3e-87
 Identities = 124/300 (41%), Positives = 173/300 (57%), Gaps = 17/300 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A+ +EIK AYR+LAR+YHPD NK P A EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 138 YDQYGEAGVKS--TVGGGSSAYTTNPF----DLFETF---FGPSMGGFPGMNQTGFRTRR 188
           YDQ+G A          G   ++        D+ E     FG     F     T  R + 
Sbjct: 64  YDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFG-DIFGRRRATRERRKT 122

Query: 189 RSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGR 248
                KGED+   + +   E+  G     E+     CE C GTG   GS  ++C TCGG 
Sbjct: 123 YQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGS 182

Query: 249 GQVMRTDQTPFGLFSQVS-VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
           G++ +      G F ++S  CP+CGGEG V+ E C KC+G G +  K+ IKV++PPGV  
Sbjct: 183 GEIYQR-----GGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGVDN 236

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GS LRV G+G AG  GGPPGDLY+ + V+  P  +R G +L+  ++I+  +A++GT ++V
Sbjct: 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEV 296

Length = 382

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  258 bits (660), Expect = 2e-83
 Identities = 124/306 (40%), Positives = 170/306 (55%), Gaps = 23/306 (7%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDD 132
              DYY  LGV ++A+ +EIK AY++L +++HPD + E    A +KFKEI  AYEVLSD 
Sbjct: 2   EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 133 KKRAMYDQYG---EAGVKSTVGGGSSAYT------TNPF--DLFETFFGPSMGGFPGMNQ 181
           +KRAMYD++G   E         G   +        N F  D+F+ FFG          +
Sbjct: 62  QKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFG----------E 111

Query: 182 TGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRI 241
              +  +R    +GED+RY+I +  S+ I GAE   E    ETC  C GTG + GS    
Sbjct: 112 RRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVT 171

Query: 242 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301
           C  C G G++    ++ FG+F     C  CGG G++  EYC +C G GRIR +    VK+
Sbjct: 172 CPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKI 231

Query: 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIM 361
           P GV  G++LR+ G G+AG  GGP GDLYV + V   P  +R G DL   ++I YL AI+
Sbjct: 232 PAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAIL 291

Query: 362 GTVVKV 367
           GT V+V
Sbjct: 292 GTTVEV 297

Length = 369

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  255 bits (653), Expect = 2e-82
 Identities = 129/295 (43%), Positives = 166/295 (56%), Gaps = 19/295 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV + AS  EIK AYRKLA QYHPD N   P A +KFKE + AYEVL D +KRA
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
            YD++G AGV    G G  +   + F    D+F   FG S GG          +RR    
Sbjct: 65  RYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGG----------SRRGPRP 114

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
             G DLRY++ + F ++  G E    +    TC+ C G+GA  G+    C  CGG GQV 
Sbjct: 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVR 174

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           ++     G F     CP C GEG VI+  C KC G G ++  + +KV++P GV TGS LR
Sbjct: 175 QSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           + GEG+ G  GGPPGDLYV + VE+    QR G DL  T  IS++ A +G  ++V
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEV 285

Length = 373

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  251 bits (643), Expect = 7e-81
 Identities = 123/293 (41%), Positives = 158/293 (53%), Gaps = 15/293 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK AYRKLAR+ HPDVN +  A EKFKEIS AYEVLSD +KR +
Sbjct: 4   DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 138 YDQYG---EAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            D  G   E+      GGG         D+FE FFG            G R R    V  
Sbjct: 64  VDLGGDPLESAGGG--GGGFGGGFGGLGDVFEAFFGGGAA------SRGPRGR----VRP 111

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G D    + L+  E   G  K+  +     C+ C G G    SK   C TCGGRG+V   
Sbjct: 112 GSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV 171

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            ++  G       CP+C G GEVI + C +C+G+GR+R ++ I VK+P GV  G  +R+ 
Sbjct: 172 QRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLA 231

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            +G+ GP GGP GDLYV +  +      RDG DL  T+S+  +DA +GT V V
Sbjct: 232 AQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTV 284

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  250 bits (640), Expect = 1e-80
 Identities = 127/290 (43%), Positives = 172/290 (59%), Gaps = 11/290 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  E+K AYRKLAR+YHPDVNK P A +KFKE+  AY+ LSD +K+A 
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+G        GGG +       D+F+ FFG   G            R  +   +G D
Sbjct: 65  YDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGG-----------RRNPNAPRQGAD 113

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           L+Y + LEF E++FG E E E+   ETC  C G+GAK G+K   CS CGG GQ+     T
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT 173

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG      VC  C G G++I + C  C G+G++R +K I VKVP G+  G  LRV G+G
Sbjct: 174 PFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQG 233

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           +AG  GGPPGDLYV  +V+     +RDG D++  + +++    +G  ++V
Sbjct: 234 EAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEV 283

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  247 bits (633), Expect = 3e-79
 Identities = 129/300 (43%), Positives = 172/300 (57%), Gaps = 20/300 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+AS +EIK AYRKLA +YHPD  K PG   A ++FKE+S AYEVLSD +K
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQK 59

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETF---FGPSMGG-------FPGMNQTGF 184
           R  YD+YG+ G  +  GG   A   N  D   TF   FG   GG         G     F
Sbjct: 60  RESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAF 119

Query: 185 RTRRRS-TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
             R       +G   +  I L F E+  G EKE  +S  ++C+ C+G+GA     +++C 
Sbjct: 120 GMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCD 179

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
            C G GQV+++     G FS  S CP CGGEG VI++ C  C G+GRI+ K+++ V +P 
Sbjct: 180 RCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPA 235

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GV +G  L++ G GDAG  G P GDLYV++DVE  P  +R G DL   + I ++DA +G 
Sbjct: 236 GVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGM 295

Length = 391

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  245 bits (628), Expect = 2e-78
 Identities = 131/310 (42%), Positives = 169/310 (54%), Gaps = 26/310 (8%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV +SA   EIK AYRKLA +YHPD  K P    A E FKE++ AYEVLS+D K
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 135 RAMYDQYGEAGVKSTVG-GGSSAYTTNPFDL------FETFFGPSMGGFPGMNQTGF--- 184
           R  YDQ+G AGV S+   GG   Y     D       F   FG       G +  GF   
Sbjct: 62  RRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGG-ARRGGGSPFGFEDV 120

Query: 185 -----RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
                R RR S    G DL+  + L   E   G EK  ++     C+ C GTG+K G   
Sbjct: 121 FGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-AT 179

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C TC G G+V +  +T FG F  ++ CP+CGGEG V+ + C  C GEG  + +  +KV
Sbjct: 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV 239

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLFSTISISYL 357
            VP GV  G+ L + G+G+AGPRGG PGDL V   +EE P     R+G D+   +++SY 
Sbjct: 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVV--IEEKPHELFVRNGDDVIYNLAVSYP 297

Query: 358 DAIMGTVVKV 367
           D ++GT V+V
Sbjct: 298 DLVLGTKVEV 307

Length = 397

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  240 bits (613), Expect = 1e-76
 Identities = 135/293 (46%), Positives = 176/293 (60%), Gaps = 11/293 (3%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  LGV KSA+ +EIK+AYRKLA +YHPD NK    + EKFKE + AYE+L D KKR  
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 138 YDQYGEAGVKSTVGG-GSSAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           YDQ+G+AGV +  GG G  AYT  ++ F  F   FG   GG  G    G    RRS   +
Sbjct: 66  YDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRG---GGSGGGRRSGPQR 122

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G DLRY++ +   ++  G E + E+  LE+C  C G+GA  GS    C  CGG GQ+ RT
Sbjct: 123 GSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT 182

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
                G FS  + CP+C G+G VIS  C+ C G+G    ++ I +K+PPGV TGS L+V 
Sbjct: 183 Q----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS 238

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GEG+AGP GGP GDLYV   +++    +R G DL     IS   AI+G  ++V
Sbjct: 239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEV 291

Length = 372

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  234 bits (598), Expect = 3e-74
 Identities = 117/292 (40%), Positives = 160/292 (54%), Gaps = 13/292 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK+AYRKLA +YHPD NKE GA EKF +I+ AY VLSD +KRA 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 138 YDQYGEAGVKSTVGGGS-SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++G A      GG        +P D+FE  FG       G    G R RR     +G+
Sbjct: 63  YDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFG-------GAGFGGGRGRRGP--ARGD 113

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMR-ICSTCGGRGQVMRTD 255
           DL  +  +   ++  G E E E+  L  CE C G+  + G K    C TC G G V    
Sbjct: 114 DLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQA 173

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +T FG+      CP+C GEG++I++ C  C G GR    + +KVK+P G+  G  +RV G
Sbjct: 174 RTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAG 233

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            G+ GP G   GDLYV++++E  P ++R+   L     I +  A +G  + V
Sbjct: 234 MGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITV 283

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  231 bits (591), Expect = 6e-73
 Identities = 129/298 (43%), Positives = 167/298 (56%), Gaps = 12/298 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+A+  EIK AYRK A QYHPD  K PG   A EKFKE + AY+VLSD  K
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPD--KNPGDKEAEEKFKEAAEAYDVLSDPDK 63

Query: 135 RAMYDQYGEAGVKSTVGGGS-SAYTTNPFDLFETF---FGPSMGGFPGMNQ-TGFRTRRR 189
           R+ YDQ+G AGV    GGG  S    +  D+F  F   FG   GGF G     G  +++R
Sbjct: 64  RSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQR 123

Query: 190 STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRG 249
             V +G DLR  + L   E   G EK+F++     C  C GTGA+  +    C TC G G
Sbjct: 124 --VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSG 181

Query: 250 QVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309
            V R   T  G     S CP+C GEG++I + C+KC GEG +  ++ I VK+P GV+ G 
Sbjct: 182 SVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241

Query: 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            L + G+G+AG  GG  GDL V ++ E  P + RD  DL   + +S   A +G  V+V
Sbjct: 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEV 299

Length = 386

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  228 bits (583), Expect = 8e-72
 Identities = 127/304 (41%), Positives = 170/304 (55%), Gaps = 20/304 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVPK A+  EIK AYRKLAR+YHPD NK +  A E+FKEIS AY+VLSD+KKR 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 137 MYDQ----YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF-------- 184
            YD+    +G  G +   GGG        FDL + F G + GG       G         
Sbjct: 70  EYDEARSLFGNGGFRPGPGGGGGG--GFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127

Query: 185 -RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
            R  RR+   +G D+  ++ L F+E+I GA     L+    C  C+GTGAK G+  R+C 
Sbjct: 128 NRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
           TC G GQV R      G FS    CP C G G +  + C  C G GR +  + ++V++P 
Sbjct: 188 TCSGTGQVSRN----SGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GVS G  +R+ G+G  G RGGP GDLYV + V+  P   R G +L  T+ +++ +A +G 
Sbjct: 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303

Query: 364 VVKV 367
            V+V
Sbjct: 304 EVRV 307

Length = 389

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  222 bits (568), Expect = 9e-70
 Identities = 115/305 (37%), Positives = 161/305 (52%), Gaps = 27/305 (8%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
              DYY  LGV K+AS +EI+ AYRKLA+QYHPD+NK P A +K  EI+ A +VL D  K
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQT---------GFR 185
           R  YDQ+G A        GSS +++N F  FE  F  +MG     + T            
Sbjct: 62  RKQYDQFGHAAFD-----GSSGFSSN-FGDFEDLFS-NMGSSGFSSFTNIFSDFFGSNKS 114

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
             +RST  KG+ +  DI L F E +FG +K  EL  L  C  C G+GA+  S + IC+ C
Sbjct: 115 DYQRST--KGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNC 172

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
            G G+V+      F  F Q + C  C G G++I   C+ C G+G+   +K I+V +P G+
Sbjct: 173 HGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGI 232

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYL-----DVEEIPGIQRDGIDLFSTISISYLDAI 360
                +++  +G A    G  GDL + +      V EI     +  D+  T +ISYLDAI
Sbjct: 233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII----NNNDILMTYNISYLDAI 288

Query: 361 MGTVV 365
           +G  +
Sbjct: 289 LGNEI 293

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  214 bits (545), Expect = 2e-66
 Identities = 112/296 (37%), Positives = 164/296 (55%), Gaps = 15/296 (5%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           S DYY  LGV K+AS  ++K AY KLA+QYHPD      A +KFKEI+AAY+VL D++KR
Sbjct: 2   SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 136 AMYDQYGEAGVKSTV----GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           A YD++G    ++      GG    +  +  D+F  FF   MGG         R+R  S+
Sbjct: 62  AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGG-------SRRSRPTSS 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G DL+Y++ +   E+  G EK    S    C+ C G+G++ G  +  C  C G G  
Sbjct: 115 KVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG-A 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R  Q   G F+    C  C G G++I   C+KC G GR   ++N+ V +P GV  G+ +
Sbjct: 174 TRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           R  GEG+AG RGG  GDLYV + ++     + DG +L   + IS+++A +G  ++V
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEV 286

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  210 bits (537), Expect = 8e-65
 Identities = 112/309 (36%), Positives = 157/309 (50%), Gaps = 23/309 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           D+Y  LGV   AS +EIK AYRKLAR+ HPD N  +P A E+FK +S A++VLSD  KR 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 137 MYDQY-----------GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGG-------FPG 178
            YD+                     GG  +      F+L + F     GG       F G
Sbjct: 70  EYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGG 129

Query: 179 MNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSK 238
           +   G  + R S   +G DL  +  L+F E+  G      L+    C  C G+GA+ G+ 
Sbjct: 130 LFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTS 189

Query: 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIK 298
            ++C TC G G + R +Q  FG FS+   C  C G G +I + C +C G G     + I 
Sbjct: 190 PKVCPTCNGSGVISR-NQGAFG-FSEP--CTDCRGTGSIIEDPCEECKGTGVTTRTRTIN 245

Query: 299 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358
           V++PPGV  G  +R+ G+G+AG RG P GDLYV + V       RDG DL  T+ +S+ +
Sbjct: 246 VRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTE 305

Query: 359 AIMGTVVKV 367
             +G+ + V
Sbjct: 306 LALGSTLSV 314

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  194 bits (494), Expect = 7e-59
 Identities = 115/301 (38%), Positives = 160/301 (53%), Gaps = 24/301 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  LGV ++AS ++IK A+R+LA+++HPD++      A EKFKEIS AYEVLSD +KR
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRR 188
             YDQ G        G G S +  + F       D+F   FG   G F     +GF   +
Sbjct: 64  RQYDQTG----TVDFGAGGSNFNWDNFTHFSDINDIFNQIFG---GNFGSDFFSGF-GNQ 115

Query: 189 RSTVTKGEDL--RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +ST     D+    DI LE  ++ +G EK  +      C  C+GTGAK G K+  C TC 
Sbjct: 116 QSTRNIDLDIYTNLDISLE--DAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCH 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ        F     V+ C +CGG G +  E C +C+G G + + ++I VK+P G +
Sbjct: 173 GTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGAT 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
               LRV G+G +   GG  GDLYV L V   P IQR   DL+    I++  A +G  ++
Sbjct: 233 DNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290

Query: 367 V 367
           +
Sbjct: 291 I 291

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  191 bits (486), Expect = 1e-57
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 14/294 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEK-FKEISAAYEVLSDDKKRA 136
           DYY  LG+ K AS  EIK AYRK+A +YHPD NK     E  FKE + AYEVL DD KRA
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
            YD++G    +   GGG   ++   + F D+FE F G     F   N+   + R+     
Sbjct: 64  QYDRFGHTAFEG--GGGFEGFSGGFSGFSDIFEDF-GDIFDSFFTGNRGQDKNRKHE--- 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           KG+DL Y I +   ++  G +    ++    CE C G  ++ G+   IC+ C G G+VM+
Sbjct: 118 KGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
                 G F   + CP C G G++IS  C+ C G+G ++ K+ I++K+P G+     +++
Sbjct: 178 GG----GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKM 233

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
            G+G   P     GDLY+ + ++     +R+G DL++T+ IS+  A +G  +K+
Sbjct: 234 RGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKI 287

Length = 365

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  164 bits (417), Expect = 6e-47
 Identities = 96/292 (32%), Positives = 144/292 (49%), Gaps = 27/292 (9%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
            Y  L + K  +  EIK AYRKLA ++HPD   +P   EKFKEIS AYEVLSD +KR +Y
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP---EKFKEISRAYEVLSDPEKRKIY 86

Query: 139 DQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDL 198
           D+YGE G++            +  DLF+  FG   GG           R+     +GED+
Sbjct: 87  DEYGEEGLEGGEQPA------DASDLFDLIFG---GG-----------RKPGGKKRGEDI 126

Query: 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTP 258
              + +   +   GA ++  ++    C  C G G    + +  C  C G+G  ++  Q  
Sbjct: 127 VSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVD-CKLCNGQGIRVQIRQMG 185

Query: 259 FGLFSQVSVCPSCGGEGEVISE--YCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
             +    S C SC G+G++I E   C+ CSG+G  + +K ++V +  GV     +   GE
Sbjct: 186 SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE 245

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
            D  P    PG++   L+ +     +R+G DLF T  IS  +A+ G V  +T
Sbjct: 246 ADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT 296

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  157 bits (398), Expect = 1e-44
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 18/291 (6%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  L V K ++ + IK +YRKLA +YHPD N  +  A EKFK I+ AY VLSD+KKRA+
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD+YG+ G+     G S +  ++ F+   +FF  + G        G R  +R   +   D
Sbjct: 65  YDRYGKKGLNQ--AGASQSDFSDFFEDLGSFFEDAFG-------FGARGSKRQKSSIAPD 115

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV-MRTDQ 256
               I L F E++FG +K  ++ +   CE C GTGAK    +  C  C G+GQV MR   
Sbjct: 116 YLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQ-- 172

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G  S    C +C G+G++I   C+ C G+  I   + I   +P G+   + + +  +
Sbjct: 173 ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNK 229

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+   + G  GDLY+   V+E    +R+G DLF    + +    +G  +KV
Sbjct: 230 GNEYEK-GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKV 279

Length = 369

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  131 bits (331), Expect = 1e-35
 Identities = 97/296 (32%), Positives = 131/296 (44%), Gaps = 78/296 (26%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           A  DYYA LGVPK+AS  EIK A++KLAR+YHPDVNK PGA EKFKEI+ AY VLSD +K
Sbjct: 2   AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           R +YD YG           S+ +   P         P  G F G N   F          
Sbjct: 62  RRIYDTYGTTA-------ASAGWQGPPPG------PPGGGDFSGFNVGDFS--------- 99

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
                     +F + +FG    F            G G   GS         GR      
Sbjct: 100 ----------DFFQQLFGGRGGF-----------GGFGDLFGSV--------GRRARKGR 130

Query: 255 D---QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           D   + P  L          GGE +V+     + S            V++PPGV  G ++
Sbjct: 131 DLEAELPLTLEEAYR-----GGE-KVVEVAGERLS------------VRIPPGVREGQVI 172

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           R+ G+G  G      GDLY+ + +   P  + +G DL++T+ +    A++G  V+V
Sbjct: 173 RLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRV 222

Length = 291

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  119 bits (300), Expect = 7e-34
 Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA-TEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP+ AS +EIK AYRKLA +YHPD N    A  EKFKEI+ AYEVLSD +KRA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 137 MYD 139
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  124 bits (313), Expect = 7e-33
 Identities = 82/296 (27%), Positives = 127/296 (42%), Gaps = 76/296 (25%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 138 YDQYGEAGVKSTVG-----GGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           YDQ  +             G   ++    F D+F + FG          Q   ++R+R  
Sbjct: 65  YDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFG----------QHARQSRQRPA 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G D+  ++ +   E++   E +  +S+     V    G                   
Sbjct: 115 -ARGHDIEIEVAVFLEETL--TEHKRTISY--NLPVYNAFG------------------- 150

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           M   + P  L  ++   P+  G G+             RIRLK                 
Sbjct: 151 MIEQEIPKTLNVKI---PAGVGNGQ-------------RIRLK----------------- 177

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
              G+G  G  GGP GDL++ + +   P     G DL   + ++  +A +G  V V
Sbjct: 178 ---GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTV 230

Length = 306

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  109 bits (275), Expect = 7e-29
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349
           R+R KK + VK+P GV  G  LR+ GEGDAGP GGPPGDLYV + V+  P  +RDG DL+
Sbjct: 30  RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89

Query: 350 STISISYLDAIMGTVVKVT 368
             + IS  +A++G  ++V 
Sbjct: 90  CEVPISLTEALLGGEIEVP 108

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score =  101 bits (255), Expect = 2e-27
 Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 2/59 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134
           DYY  LGVP+ AS  EIK AYRKLA +YHPD N   +  A EKFKEI+ AYEVLSD +K
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score =  100 bits (251), Expect = 8e-27
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSD 131
           DYY  LGVP  AS +EIK AYRKLA +YHPD N  +P A EKFKEI+ AYEVLSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C G+GAK G+K + C TCGG GQV +   T FG F   + CP+CGG G++I + C K
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (252), Expect = 4e-25
 Identities = 66/274 (24%), Positives = 89/274 (32%), Gaps = 54/274 (19%)

Query: 74  CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSD 131
               DYY  LGVP +AS +EIK AYRKLA +YHPD N      A EKFKEI+ AYE+LSD
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62

Query: 132 DKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
            ++RA YD+ G            SA    P +      G                R +  
Sbjct: 63  PERRAEYDKIGADNYFPGKSYRESAAF--PIEGSLQLTGLYE-----------EWRGKRN 109

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+ +    D++      +  A   F                + GS  R           
Sbjct: 110 KTERKASLADLLSRGLSGLAAALSLFA----------DEAALRSGSLRRRDLA------- 152

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
                  F                                 L K +K  +  G   G  L
Sbjct: 153 -ANLADNFEEALAGVK-------------------KAVARLLGKALKSTIKAGALEGKAL 192

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDG 345
           R+ G   +    G  G   +    +  P    +G
Sbjct: 193 RLKGLLKSAR--GALGKARLKELSKRHPPFALEG 224

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 98.3 bits (244), Expect = 3e-22
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ + A  +EIK A+RKLA++YHPD NK P A   F EI+ A +VLS+ KKRA 
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFF 169
           YD+YG  GV          +     D+F +FF
Sbjct: 63  YDKYGHDGVD-----REDDFDFQA-DVFNSFF 88

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C GTGAK G K + C  C G GQV++  +TP G+F     CP CGG G++I + C+ 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 63.2 bits (155), Expect = 4e-12
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 47/173 (27%)

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT-------GAKMGSKMRICSTCGGR 248
            DLRYD+ L   E+ FG EKE ++    T      T       G   G ++R+     G 
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRL----RGE 56

Query: 249 GQVMRTDQTPFGLFSQVSVCPS----------------------CGGEGEVISEYCRKCS 286
           G        P  L+  + V P                        GGE EV +       
Sbjct: 57  GDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT------- 109

Query: 287 GEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339
                 L   +K+K+PPG   G++LR+ G+G    RGG  GDLYV + V E P
Sbjct: 110 ------LGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKV-EFP 155

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 14/70 (20%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD--VNKEPG--------ATEKFKEISAAYE 127
           D Y  LGV +S   +EIK AYRKL  ++HPD  V K  G        A EK +EI AAYE
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK--GLPPEMMEMAKEKAQEIQAAYE 258

Query: 128 VLSDDKKRAM 137
           ++   K++  
Sbjct: 259 LIK--KQKGF 266

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           +Y  LGV  +A  KEI   Y KLA  Y+P          KFK+I+ AY++L D  K+ MY
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Query: 139 DQYGEAGVK 147
           +++G  G+K
Sbjct: 635 NKFGYDGIK 643

Length = 1136

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 63.1 bits (153), Expect = 8e-11
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGAT--------EKFKEISAAYEVL 129
           D Y  LG+ +  S ++IK  YR L+ ++HPD  K P           EK+K I+ AY +L
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPD--KAPPMVNELRSEYEEKYKTITKAYGLL 156

Query: 130 SDDKKRAMYDQYGEAGVKSTVGGG 153
           +D K+R  Y  YG          G
Sbjct: 157 TDKKRRENYLNYGTPDSPQHTSEG 180

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 78  DYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNKEPGAT---EKFKEISAAYEVLSD 131
           D YA LG+ K    A   +I  A++K   +YHPD     G     E FK I  A EVL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 132 DKKRAMYD 139
            K R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEG-DAGPRGGPPGDLYVYLDVEEIP 339
           + +K+K+P G   G  LR+ G+G      G   GDL V L+V +IP
Sbjct: 27  RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNV-KIP 71

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVL 129
           D +   G+P++       +K  YR+L R YHPD   +        A ++  E++ AY+ L
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61

Query: 130 SDDKKRAMY 138
            D   RA Y
Sbjct: 62  KDPLLRAEY 70

Length = 174

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 92  KEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDKKRAMY 138
             ++  YR+L  QYHPD +     +  A+++   ++ AY  L D  +RA Y
Sbjct: 6   SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 297 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVE 336
           +K+K+P G  TG + R+ G+G    R G  GDLY  + VE
Sbjct: 290 VKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVE 329

Length = 371

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD-----------VNKEPGATEKFKEISAAY 126
           D    LGV   A    IK AYRKL  + HPD           + K     EK +EI  AY
Sbjct: 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEK---LKEKLQEIQEAY 170

Query: 127 E 127
           E
Sbjct: 171 E 171

Length = 174

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           LG+P+SA G    ++ AY +   ++HPD   + G  EK KE++  Y+   +  K      
Sbjct: 11  LGLPRSAWGNLPLMRKAYLRKCLEFHPD---KGGDEEKMKELNTLYKKFRESVKSLRDLD 67

Query: 141 YGE 143
             E
Sbjct: 68  GEE 70

Length = 153

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           LG+P +A G    ++ AY +  ++YHPD   + G  EK K +++ Y+ L +  K A 
Sbjct: 17  LGLPMAAWGNLPLMRKAYLRKCKEYHPD---KGGDEEKMKRLNSLYKKLQEGVKSAR 70

Length = 647

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354
           K  KVK+PPG   G  +RV G+G    +G   GDL V + + ++P              I
Sbjct: 302 KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHI-DVP-------------KI 347

Query: 355 SYLDAIMGTVVKV 367
           S L  +MG   K 
Sbjct: 348 SMLSKLMGDGKKA 360

Length = 382

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 17/75 (22%)

Query: 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE-GE 276
             S    C  C G G         C  CGG G+V+               C  CG     
Sbjct: 49  FASFEIPCPKCRGKGTVTV--YDTCPECGGTGKVLT--------------CDICGDIIVP 92

Query: 277 VISEYCRKCSGEGRI 291
                C +C  + +I
Sbjct: 93  WEEGLCPECRRKPKI 107

Length = 715

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.97
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.8
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.77
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.75
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.73
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.71
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.69
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PHA03102	153	Small T antigen; Reviewed	99.67
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.64
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.64
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.64
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.62
PRK14282	369	chaperone protein DnaJ; Provisional	99.58
PRK14290	365	chaperone protein DnaJ; Provisional	99.57
PRK14298	377	chaperone protein DnaJ; Provisional	99.57
PRK14294	366	chaperone protein DnaJ; Provisional	99.56
PRK10767	371	chaperone protein DnaJ; Provisional	99.55
PRK14301	373	chaperone protein DnaJ; Provisional	99.55
PRK14285	365	chaperone protein DnaJ; Provisional	99.54
PRK14284	391	chaperone protein DnaJ; Provisional	99.53
PRK14278	378	chaperone protein DnaJ; Provisional	99.53
PRK14300	372	chaperone protein DnaJ; Provisional	99.52
PRK14288	369	chaperone protein DnaJ; Provisional	99.51
PRK14287	371	chaperone protein DnaJ; Provisional	99.51
PRK14276	380	chaperone protein DnaJ; Provisional	99.5
PRK14281	397	chaperone protein DnaJ; Provisional	99.5
PRK14286	372	chaperone protein DnaJ; Provisional	99.5
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.5
PRK14279	392	chaperone protein DnaJ; Provisional	99.5
PRK14280	376	chaperone protein DnaJ; Provisional	99.49
PRK14277	386	chaperone protein DnaJ; Provisional	99.49
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.47
PRK14296	372	chaperone protein DnaJ; Provisional	99.47
PRK14297	380	chaperone protein DnaJ; Provisional	99.47
PRK14289	386	chaperone protein DnaJ; Provisional	99.46
PRK14295	389	chaperone protein DnaJ; Provisional	99.46
PRK14293	374	chaperone protein DnaJ; Provisional	99.45
PRK14283	378	chaperone protein DnaJ; Provisional	99.44
PRK05014	171	hscB co-chaperone HscB; Provisional	99.44
PRK01356	166	hscB co-chaperone HscB; Provisional	99.44
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.44
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.44
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.42
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PRK14292	371	chaperone protein DnaJ; Provisional	99.4
PRK14291	382	chaperone protein DnaJ; Provisional	99.4
PRK00294	173	hscB co-chaperone HscB; Provisional	99.38
PRK03578	176	hscB co-chaperone HscB; Provisional	99.37
PTZ00100	116	DnaJ chaperone protein; Provisional	99.35
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.25
PHA02624	647	large T antigen; Provisional	99.23
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.16
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.13
PRK01773	173	hscB co-chaperone HscB; Provisional	99.01
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.95
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.89
PRK14299	291	chaperone protein DnaJ; Provisional	98.87
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.86
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.83
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.66
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.62
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.43
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.23
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.16
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.12
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.04
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.87
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.46
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.12
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.78
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.54
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.46
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.45
KOG2813	406	consensus Predicted molecular chaperone, contains	96.28
KOG0431	453	consensus Auxilin-like protein and related protein	95.91
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.47
KOG2813	406	consensus Predicted molecular chaperone, contains	94.97
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.26
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	94.13
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	87.16
COG5552	88	Uncharacterized conserved protein [Function unknow	85.6
PF13446	62	RPT: A repeated domain in UCH-protein	85.52
PF10041	78	DUF2277: Uncharacterized conserved protein (DUF227	81.0
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	80.99

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-77  Score=570.17  Aligned_cols=283  Identities=48%  Similarity=0.888  Sum_probs=257.2

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG  152 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~  152 (368)
                      ++.+|||+||||+++||++|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++.+..+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            46789999999999999999999999999999999999 78999999999999999999999999999999998733222


Q ss_pred             C--CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647          153 G--SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (368)
Q Consensus       153 ~--~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G  230 (368)
                      +  .+.|..++.|||++|||++.+          +++++..+.++.||.+.|+|+|+||++|+++++.+.+...|..|+|
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~----------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G  150 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGG----------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG  150 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCc----------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence            2  222333578899999973211          1223334678999999999999999999999999999999999999


Q ss_pred             CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~  310 (368)
                      +|++.+..+.+|++|+|+|.+...+++  |+|+++++|+.|+|+|.+++++|.+|+|.|++.+.++|+|+||+|+.+|++
T Consensus       151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~  228 (371)
T COG0484         151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR  228 (371)
T ss_pred             CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence            999999999999999999999887777  889999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++.|+|+++.+++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++|+|+
T Consensus       229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vp  286 (371)
T COG0484         229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVP  286 (371)
T ss_pred             EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEE
Confidence            9999999999988899999999999999999999999999999999999999999885

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-66  Score=507.78  Aligned_cols=280  Identities=38%  Similarity=0.699  Sum_probs=241.9

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--CC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--~~  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||+||++||+||+++++.+.+  ++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~   82 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence            4699999999999999999999999999999999988889999999999999999999999999999987753211  11


Q ss_pred             CCCCc-----------CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647          154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (368)
Q Consensus       154 ~~~~~-----------~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~  222 (368)
                      .+.+.           .++.|+|+.|||++           .+  ......++.|+++.|.|+|+|+|+|+++++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-----------~~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~  149 (372)
T PRK14296         83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-----------KS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL  149 (372)
T ss_pred             CCccccccccccccccccchhhhhhhcCCC-----------cc--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence            01110           01113444444310           00  11123568999999999999999999999999999


Q ss_pred             eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip  302 (368)
                      +.|..|+|+|...+....+|+.|+|+|.++..+++++.+++++.+|+.|+|+|+++.+.|..|+|.+.+.+.++++|.||
T Consensus       150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  229 (372)
T PRK14296        150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP  229 (372)
T ss_pred             eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence            99999999999988889999999999999888777775566678999999999999999999999999999999999999


Q ss_pred             CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccc-cCceEEEeccCHhhhccCCeEEeC
Q 017647          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~-g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+++|++|+|+|+|++...++.+|||||+|+|++|+.|+|+ |+|||++++|+|+|||||+++.|+
T Consensus       230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~  296 (372)
T PRK14296        230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK  296 (372)
T ss_pred             CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee
Confidence            999999999999999997667789999999999999999995 899999999999999999999885

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-65  Score=503.03  Aligned_cols=280  Identities=46%  Similarity=0.839  Sum_probs=248.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC--
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG--  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~--  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+++++.+.++.  
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            469999999999999999999999999999999998778899999999999999999999999999998776321110  


Q ss_pred             --CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647          154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (368)
Q Consensus       154 --~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~  231 (368)
                        .+.+ .++.|+|++|||++  +  +     . .  .....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+
T Consensus        84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~-~--~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~  150 (377)
T PRK14298         84 FRGADF-GGFGDIFEMFFGGG--G--R-----R-G--RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT  150 (377)
T ss_pred             cccCCc-CcchhhhHhhhcCC--C--c-----c-C--CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence              0011 12346778787631  0  0     0 0  1123578999999999999999999999999999999999999


Q ss_pred             ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i  311 (368)
                      |...+....+|+.|+|+|.++..+++++|+++++.+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|
T Consensus       151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i  230 (377)
T PRK14298        151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL  230 (377)
T ss_pred             cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence            99998888999999999999988888888898889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|+|++...++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  287 (377)
T PRK14298        231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP  287 (377)
T ss_pred             EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEe
Confidence            999999997767889999999999999999999999999999999999999999884

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-65  Score=500.70  Aligned_cols=281  Identities=45%  Similarity=0.879  Sum_probs=249.3

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~  154 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.+.++++|++|++||++|+||.+|++||+||+++++.+.++ +.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            46999999999999999999999999999999999877889999999999999999999999999999877643211 11


Q ss_pred             CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (368)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~  234 (368)
                      +.|. ++.|+|+.|||++.    +.     +.  .....++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        83 ~~f~-~~~d~f~~~fgg~~----~~-----~~--~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  150 (371)
T PRK14287         83 GDFG-GFSDIFDMFFGGGG----GR-----RN--PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK  150 (371)
T ss_pred             cccc-chHHHHHhhhcccc----CC-----CC--CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence            1121 23478888887310    00     00  1113468999999999999999999999999999999999999999


Q ss_pred             cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (368)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (368)
                      .+....+|+.|+|+|.++..+++++|+++++.+|+.|.|+|+++.+.|..|.|.+.+.+.++++|.||+|+++|++|+|+
T Consensus       151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  230 (371)
T PRK14287        151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS  230 (371)
T ss_pred             CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence            88888999999999999998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  284 (371)
T PRK14287        231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVP  284 (371)
T ss_pred             cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEE
Confidence            999998766789999999999999999999999999999999999999999874

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-65  Score=501.46  Aligned_cols=278  Identities=35%  Similarity=0.642  Sum_probs=236.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+.+ +.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~   80 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ   80 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence            579999999999999999999999999999999997 4678999999999999999999999999999987763211 11


Q ss_pred             CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (368)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~  234 (368)
                      ..| .++|+.|++||+..||+ ++   .   ...+....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+|..
T Consensus        81 ~~~-~~~f~~~~~~F~~~fg~-g~---~---~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  152 (369)
T PRK14288         81 SDF-SDFFEDLGSFFEDAFGF-GA---R---GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK  152 (369)
T ss_pred             ccc-ccchhhHHHHHHhhcCC-CC---c---ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence            112 12333333444432221 00   0   0011123468999999999999999999999999999999999999998


Q ss_pred             cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (368)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (368)
                      .. ...+|+.|+|+|.++..+    |+++++++|+.|+|+|+++.+.|..|.|.+++.+.++++|.||+|+++|++|+|+
T Consensus       153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~  227 (369)
T PRK14288        153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK  227 (369)
T ss_pred             CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence            76 578999999999876543    6777778999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|++.+ ++.+|||||+|+|++|+.|+|+|+|||++++|+|.|||||+++.|+
T Consensus       228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~  280 (369)
T PRK14288        228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVP  280 (369)
T ss_pred             cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEee
Confidence            9999966 5779999999999999999999999999999999999999999885

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.9e-65  Score=501.10  Aligned_cols=282  Identities=45%  Similarity=0.844  Sum_probs=249.7

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC---
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG---  152 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~---  152 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++.+.++   
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            46999999999999999999999999999999999888899999999999999999999999999999887643211   


Q ss_pred             CCCCCc-----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647          153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (368)
Q Consensus       153 ~~~~~~-----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~  227 (368)
                      +.+.|.     .++.|+|++|||++.    +       .+......++.|+.+.|.|+|||+|+|+++++.+.+.+.|..
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~----~-------~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~  151 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGGG----A-------RRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT  151 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCccc----c-------ccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence            111111     123467777876310    0       000112347899999999999999999999999999999999


Q ss_pred             ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (368)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~  307 (368)
                      |+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|.||+|+++
T Consensus       152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (380)
T PRK14276        152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET  231 (380)
T ss_pred             CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence            99999998888899999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~  292 (380)
T PRK14276        232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVP  292 (380)
T ss_pred             CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEE
Confidence            9999999999998766778999999999999999999999999999999999999999884

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.6e-65  Score=499.36  Aligned_cols=281  Identities=49%  Similarity=0.910  Sum_probs=249.3

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC--
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS--  154 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~--  154 (368)
                      .|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++.+.+++.  
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~   83 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG   83 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence            699999999999999999999999999999999988889999999999999999999999999999988764321110  


Q ss_pred             -CCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647          155 -SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (368)
Q Consensus       155 -~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~  231 (368)
                       ..|.  .++.|+|+.|||++  +  .       ........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        84 ~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~  152 (376)
T PRK14280         84 GGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGS  152 (376)
T ss_pred             CCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCc
Confidence             1111  13447788888631  1  0       0001123478999999999999999999999999999999999999


Q ss_pred             ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i  311 (368)
                      |...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++...|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       153 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i  232 (376)
T PRK14280        153 GAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQI  232 (376)
T ss_pred             ccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEE
Confidence            99988888999999999999988899999999889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       233 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  289 (376)
T PRK14280        233 RVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVP  289 (376)
T ss_pred             EEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence            999999998767788999999999999999999999999999999999999999874

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.4e-65  Score=497.79  Aligned_cols=282  Identities=43%  Similarity=0.746  Sum_probs=247.3

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~~  154 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++....+.. ++.
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~   81 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF   81 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence            4699999999999999999999999999999999987788999999999999999999999999999864321110 110


Q ss_pred             C-CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcc
Q 017647          155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (368)
Q Consensus       155 ~-~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~  233 (368)
                      + .| .++.|+|+.|||++ +.  +       ........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        82 ~~~f-~~~~d~f~~ffgg~-g~--~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~  150 (378)
T PRK14278         82 GGGF-GGLGDVFEAFFGGG-AA--S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT  150 (378)
T ss_pred             CcCc-CchhHHHHHHhCCC-CC--C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence            1 11 12347788888731 10  0       000112356899999999999999999999999999999999999999


Q ss_pred             ccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (368)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l  313 (368)
                      ..+....+|+.|+|+|.++..+++.+|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  230 (378)
T PRK14278        151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL  230 (378)
T ss_pred             CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence            98888999999999999988888999999988999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  285 (378)
T PRK14278        231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVE  285 (378)
T ss_pred             ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEe
Confidence            9999998777778999999999999999999999999999999999999999875

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-64  Score=494.89  Aligned_cols=283  Identities=43%  Similarity=0.829  Sum_probs=245.5

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--  151 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.  +.++++|++|++||++|+||.+|++||+||+++++....  
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            4699999999999999999999999999999999874  468899999999999999999999999999887652110  


Q ss_pred             CCCCCC-cC------CCc--cccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647          152 GGSSAY-TT------NPF--DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (368)
Q Consensus       152 ~~~~~~-~~------~~~--d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~  222 (368)
                      ++.+.+ ..      ++|  |+|+.|||+. +   +.      ...+....++.|+++.|.|+|+|+|+|+++++.+.+.
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~-~---~~------~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~  152 (369)
T PRK14282         83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER-R---TQ------EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY  152 (369)
T ss_pred             CCCCcccccccccccccccchhhhHhhccc-C---Cc------ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence            011111 10      111  4555565421 0   00      0011223578999999999999999999999999999


Q ss_pred             eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip  302 (368)
                      +.|+.|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.+++.+.++++|.||
T Consensus       153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip  232 (369)
T PRK14282        153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP  232 (369)
T ss_pred             ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+++|++|+|+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~  298 (369)
T PRK14282        233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVP  298 (369)
T ss_pred             CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEe
Confidence            999999999999999998777789999999999999999999999999999999999999999874

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-64  Score=498.63  Aligned_cols=286  Identities=44%  Similarity=0.868  Sum_probs=248.5

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCccccc-CC
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG  152 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~-~~  152 (368)
                      +..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+. ++
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            35799999999999999999999999999999999974 57889999999999999999999999999998776321 10


Q ss_pred             C--C-CCC-----c---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecc
Q 017647          153 G--S-SAY-----T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH  221 (368)
Q Consensus       153 ~--~-~~~-----~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~  221 (368)
                      +  . +.+     .   .++.|+|++||+..+|+    +    +........++.|+++.|.|+|+|+|+|+++++.+.+
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg----~----~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r  154 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGT----G----RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER  154 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhcccccC----C----CcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence            0  0 111     1   11225677777643221    0    0001112347899999999999999999999999999


Q ss_pred             eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEe
Q 017647          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV  301 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~I  301 (368)
                      .+.|+.|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.+.+.+.+.++|.|
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  234 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI  234 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence            99999999999998888899999999999999999999999998999999999999999999999999999999999999


Q ss_pred             CCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       302 p~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  301 (386)
T PRK14277        235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIP  301 (386)
T ss_pred             CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEE
Confidence            9999999999999999997666778999999999999999999999999999999999999999884

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-64  Score=494.19  Aligned_cols=282  Identities=47%  Similarity=0.869  Sum_probs=243.3

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-C
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+.++ +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence            4699999999999999999999999999999999974 6789999999999999999999999999999887632111 1


Q ss_pred             CCC---Cc---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647          154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (368)
Q Consensus       154 ~~~---~~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~  227 (368)
                      .+.   +.   .++.|+|+.|||+..++.    + .  ........++.|+++.|.|+|||+|+|+++++.+.+.+.|..
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~----~-~--~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~  155 (372)
T PRK14286         83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG----S-G--GGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD  155 (372)
T ss_pred             CCCcccccccccchhhHHHHhhCCCccCC----C-c--ccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence            111   11   133477888887421110    0 0  001112357899999999999999999999999999999999


Q ss_pred             ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (368)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~  307 (368)
                      |+|+|...+....+|+.|+|+|.++..+    |++++..+|+.|+|+|+++.+.|..|+|.+.+.+.++++|.||+|+++
T Consensus       156 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (372)
T PRK14286        156 CNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET  231 (372)
T ss_pred             CcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence            9999999888889999999999886643    778888999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  292 (372)
T PRK14286        232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVP  292 (372)
T ss_pred             CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEe
Confidence            9999999999998766778999999999999999999999999999999999999999884

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.7e-64  Score=493.78  Aligned_cols=284  Identities=45%  Similarity=0.864  Sum_probs=249.0

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC---
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---  151 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~---  151 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|++||+||+++++.+.+   
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            3699999999999999999999999999999999974 578899999999999999999999999999988763211   


Q ss_pred             CCCCCCc----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647          152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (368)
Q Consensus       152 ~~~~~~~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~  227 (368)
                      ++.+.+.    .++.|+|++|||+.+++   .     +. +.....++.|+++.|.|+|||+|+|+++++.+.+.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~---~-----~~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  153 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGS---S-----SR-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET  153 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCccc---c-----cc-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence            1111111    12347788888742111   0     00 1112357899999999999999999999999999999999


Q ss_pred             ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (368)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~  307 (368)
                      |+|+|...+....+|+.|+|.|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus       154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~  233 (380)
T PRK14297        154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT  233 (380)
T ss_pred             cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence            99999998888899999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~  294 (380)
T PRK14297        234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVP  294 (380)
T ss_pred             CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEE
Confidence            9999999999997766778999999999999999999999999999999999999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-64  Score=495.63  Aligned_cols=290  Identities=38%  Similarity=0.696  Sum_probs=236.8

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--  151 (368)
                      +..|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||+||++||+||+++...+..  
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            5689999999999999999999999999999999997 4578999999999999999999999999999753321110  


Q ss_pred             -----CCCCCCc-------CCCccccccccCCCCCCC----CCCCCCCCCCccCcccccCcceEEEEeeeccccccccee
Q 017647          152 -----GGSSAYT-------TNPFDLFETFFGPSMGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK  215 (368)
Q Consensus       152 -----~~~~~~~-------~~~~d~F~~fFg~~~g~~----~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~  215 (368)
                           ++.+.|.       .++.++|+..++...++|    +++++.+.+..+.....++.|+++.|.|+|+|+|+|+++
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~  166 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM  166 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence                 0001111       111222221111111111    111100000011122357899999999999999999999


Q ss_pred             eEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEee
Q 017647          216 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK  295 (368)
Q Consensus       216 ~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~  295 (368)
                      ++.+.+.+.|+.|+|+|...+..+.+|+.|+|+|.++...    |+++++.+|+.|+|+|+++.+.|..|.|.+.+.+.+
T Consensus       167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~  242 (392)
T PRK14279        167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR  242 (392)
T ss_pred             EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence            9999999999999999999888899999999999887643    667778999999999999999999999999999999


Q ss_pred             EEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +++|.||+|+++|++|+|+|+|++.+++..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~  315 (392)
T PRK14279        243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVP  315 (392)
T ss_pred             eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEE
Confidence            9999999999999999999999998877778999999999999999999999999999999999999999874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.6e-64  Score=490.19  Aligned_cols=278  Identities=36%  Similarity=0.727  Sum_probs=241.1

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-C
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~  153 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+||.+|+.||+||+++++.+.+. +
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            4699999999999999999999999999999999874 5688999999999999999999999999999877532110 1


Q ss_pred             -CCCC---c---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecc
Q 017647          154 -SSAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE  226 (368)
Q Consensus       154 -~~~~---~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~  226 (368)
                       .+.+   .   .++.|+|++|||+..+        +  . +.....++.|++++|.|+|||+|+|+++++.+.+.+.|.
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~--------~--~-~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~  150 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG--------Q--D-KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE  150 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCcC--------C--C-CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence             0111   1   1223567777763110        0  0 011134789999999999999999999999999999999


Q ss_pred             cccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCc
Q 017647          227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS  306 (368)
Q Consensus       227 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~  306 (368)
                      .|+|+|...+....+|+.|+|+|.++.    .+|+++++.+|+.|+|.|.++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus       151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  226 (365)
T PRK14285        151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID  226 (365)
T ss_pred             CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence            999999998888899999999998764    4588877899999999999999999999999999999999999999999


Q ss_pred             CCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       307 ~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~  288 (365)
T PRK14285        227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQ  288 (365)
T ss_pred             CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEE
Confidence            99999999999998766778999999999999999999999999999999999999999885

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=1.2e-63  Score=493.33  Aligned_cols=268  Identities=34%  Similarity=0.601  Sum_probs=236.2

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS  155 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~  155 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+|+   ..++|++|++||+||+||.+|+.||+||+++++.+.  +  
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--~--   99 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--Q--   99 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--C--
Confidence            579999999999999999999999999999999985   358999999999999999999999999988765321  1  


Q ss_pred             CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (368)
Q Consensus       156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~  235 (368)
                        ..++.|+|+.||+++.            .  +....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|..|+|+|...
T Consensus       100 --~~d~~d~f~~~Fggg~------------~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~  163 (421)
T PTZ00037        100 --PADASDLFDLIFGGGR------------K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK  163 (421)
T ss_pred             --CcchhhhHHHhhcccc------------c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCC
Confidence              1345678888886310            0  01134689999999999999999999999999999999999999865


Q ss_pred             CceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc--eeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647          236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (368)
Q Consensus       236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l  313 (368)
                      + ...+|+.|+|+|.++...++++.+++++.+|+.|+|+|+++.  +.|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus       164 ~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~  242 (421)
T PTZ00037        164 D-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITF  242 (421)
T ss_pred             C-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEE
Confidence            4 578999999999987777666533455689999999999986  7999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|++.+ ++.+|||||+|.+++|+.|+|+|+|||+++.|+|+|||||+++.|+
T Consensus       243 ~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~  296 (421)
T PTZ00037        243 HGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT  296 (421)
T ss_pred             ecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence            99999976 5789999999999999999999999999999999999999999885

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-63  Score=489.03  Aligned_cols=281  Identities=43%  Similarity=0.806  Sum_probs=238.4

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CC
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~  154 (368)
                      .|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||++|+|+.+|+.||+||++++..+.++ +.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            389999999999999999999999999999999974 5788999999999999999999999999998876432110 00


Q ss_pred             CCCc--CCC---------------ccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeE
Q 017647          155 SAYT--TNP---------------FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF  217 (368)
Q Consensus       155 ~~~~--~~~---------------~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~  217 (368)
                      +.+.  .++               .|+|+.||++..+++++       ........++.|+++.|.|+|||+|+|+++++
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i  153 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL  153 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence            1111  011               24444454421000100       00011235689999999999999999999999


Q ss_pred             eecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEE
Q 017647          218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI  297 (368)
Q Consensus       218 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l  297 (368)
                      .+.+.+.|+.|+|+|...+....+|+.|+|+|.++...    |++++..+|+.|+|+|.++.+.|..|.|.+.+.+.+++
T Consensus       154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l  229 (391)
T PRK14284        154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV  229 (391)
T ss_pred             EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence            99999999999999999988899999999999887543    77888899999999999999999999999999999999


Q ss_pred             EEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       298 ~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|.||||+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~  300 (391)
T PRK14284        230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIP  300 (391)
T ss_pred             EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEe
Confidence            99999999999999999999998877889999999999999999999999999999999999999999984

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.4e-63  Score=484.03  Aligned_cols=280  Identities=50%  Similarity=0.903  Sum_probs=241.2

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~   82 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF   82 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence            4699999999999999999999999999999999974 678899999999999999999999999999988763211111


Q ss_pred             CCCc---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647          155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (368)
Q Consensus       155 ~~~~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~  231 (368)
                      +.+.   .++.|+|++|||.  ++.   .    +.+......++.|+++.|.|+|||+|+|+++++.+.+.+.|..|+|+
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~--g~~---~----~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~  153 (366)
T PRK14294         83 SGFDDIFSSFGDIFEDFFGF--GGG---R----RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS  153 (366)
T ss_pred             CccccchhhhhhhHHHhhcc--CCC---c----CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence            1221   1223667777751  110   0    00011123568999999999999999999999999999999999999


Q ss_pred             ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i  311 (368)
                      |........+|+.|+|.|.++..    .|++++..+|+.|+|+|+++.+.|..|+|.+.+.+.+.++|.||+|+++|++|
T Consensus       154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  229 (366)
T PRK14294        154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL  229 (366)
T ss_pred             cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence            99988888999999999988653    27788889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  286 (366)
T PRK14294        230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP  286 (366)
T ss_pred             EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEE
Confidence            999999998777789999999999999999999999999999999999999999874

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=7.2e-63  Score=482.08  Aligned_cols=282  Identities=54%  Similarity=0.972  Sum_probs=247.8

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCCCC
Q 017647           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (368)
Q Consensus        78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~~~  157 (368)
                      |||+||||+++|+.+|||+|||+||++||||+++.+.+.++|++|++||++|+|+.+|++||+||+++++.+..+..+.|
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            79999999999999999999999999999999987778999999999999999999999999999988753211101111


Q ss_pred             ---c----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647          158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (368)
Q Consensus       158 ---~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G  230 (368)
                         .    .++.|+|+.|||+.+++       +  ..+.....++.|++++|.|+|+|+|+|+++++.+.+.+.|..|+|
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G  151 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG  151 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence               1    12346777787632110       0  001122357899999999999999999999999999999999999


Q ss_pred             CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~  310 (368)
                      +|...+....+|+.|+|+|.++..+++++|+++++.+|+.|.|+|+++.+.|..|.|.+.+.+.+.++|.||+|+++|++
T Consensus       152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  231 (354)
T TIGR02349       152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR  231 (354)
T ss_pred             CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence            99988888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+|+|++...+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~  289 (354)
T TIGR02349       232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP  289 (354)
T ss_pred             EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence            9999999987666778999999999999999999999999999999999999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.9e-63  Score=487.02  Aligned_cols=292  Identities=43%  Similarity=0.780  Sum_probs=245.5

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+||.+|+.||+||+++++.... ++
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            4699999999999999999999999999999999974 568899999999999999999999999999987763211 11


Q ss_pred             CCCCc---CCCccc---cccccCCCCCC-------CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeec
Q 017647          154 SSAYT---TNPFDL---FETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS  220 (368)
Q Consensus       154 ~~~~~---~~~~d~---F~~fFg~~~g~-------~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~  220 (368)
                      ...|.   .+..|+   |++|||+..+.       |.++...+....++....++.|+++.|.|+|||+|+|+++++.+.
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            11111   112233   45778642110       000000000000111224689999999999999999999999999


Q ss_pred             ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEE
Q 017647          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK  300 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~  300 (368)
                      +.+.|..|+|+|...+ ...+|+.|+|.|.+...+++.+|+++++.+|+.|+|.|.++.+.|..|.|.+.+.+.++++|.
T Consensus       162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  240 (397)
T PRK14281        162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT  240 (397)
T ss_pred             eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence            9999999999999876 578999999999999888999999998899999999999999999999999999999999999


Q ss_pred             eCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       301 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      ||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  308 (397)
T PRK14281        241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVP  308 (397)
T ss_pred             cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEee
Confidence            99999999999999999998767789999999999999999999999999999999999999999884

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-62  Score=484.03  Aligned_cols=290  Identities=42%  Similarity=0.768  Sum_probs=240.1

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhcc----ccccCcccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST  149 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~----~g~~g~~~~  149 (368)
                      +..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|++||+    ||+++++.+
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            56799999999999999999999999999999999874 5689999999999999999999999999    998887632


Q ss_pred             cCCC-CCCCcCCCccccccccCCC-CCCC----CCCCCCCCCC-ccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647          150 VGGG-SSAYTTNPFDLFETFFGPS-MGGF----PGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (368)
Q Consensus       150 ~~~~-~~~~~~~~~d~F~~fFg~~-~g~~----~g~~~~~~~~-~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~  222 (368)
                      .+++ .+.|..++.++|..+++.+ ++++    ..++...|+. .......++.|+++.|.|+|||+|+|+++++.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~  166 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ  166 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence            1111 1122223344443321100 0000    0000000110 011223578999999999999999999999999999


Q ss_pred             eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip  302 (368)
                      +.|+.|+|+|...+....+|+.|+|+|.++...    |+|+++.+|+.|+|+|.++.+.|..|.|.+++.+.++++|.||
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip  242 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP  242 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence            999999999999988889999999999987643    5677778999999999999999999999999999999999999


Q ss_pred             CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+++|++|+|+|+|++.+.+..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~  308 (389)
T PRK14295        243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVP  308 (389)
T ss_pred             CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEE
Confidence            999999999999999998777788999999999999999999999999999999999999999884

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-62  Score=482.60  Aligned_cols=281  Identities=45%  Similarity=0.834  Sum_probs=238.9

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+.  +.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~   80 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF   80 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence            4799999999999999999999999999999999874 56889999999999999999999999999998876321  11


Q ss_pred             CCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCc
Q 017647          155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (368)
Q Consensus       155 ~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G  232 (368)
                      +.|.  .++|+.|+++|+..+| +++.+     ..+.....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+|
T Consensus        81 ~g~~~~~~~~~~f~d~f~~~fg-~g~~~-----~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G  154 (373)
T PRK14301         81 GGFSSAEDIFSHFSDIFGDLFG-FSGGG-----SRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG  154 (373)
T ss_pred             CCcccccccccchHHHHHHHhh-ccCcc-----cccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence            1221  1223223333332111 00000     00111235789999999999999999999999999999999999999


Q ss_pred             cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                      ...+....+|+.|+|+|.+...    .|+++++.+|+.|+|+|+++.+.|..|+|.+++.+.++++|.||+|+++|++|+
T Consensus       155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  230 (373)
T PRK14301        155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR  230 (373)
T ss_pred             cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence            9988888999999999988653    277888899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~  286 (373)
T PRK14301        231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVP  286 (373)
T ss_pred             EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEe
Confidence            99999998767779999999999999999999999999999999999999999884

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-62  Score=481.55  Aligned_cols=288  Identities=43%  Similarity=0.795  Sum_probs=241.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--CC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--~~  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++..+.+  ++
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            5799999999999999999999999999999999988889999999999999999999999999999987653211  11


Q ss_pred             CCCCc----CCCccccccccCCC-CCC-CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647          154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (368)
Q Consensus       154 ~~~~~----~~~~d~F~~fFg~~-~g~-~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~  227 (368)
                      ...|.    .++.|+|++||+.. +++ |++....+.+........++.|+++.|.|+|+|+|+|+++++.+.+.+.|..
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  161 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA  161 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence            11121    23346677764321 011 1111000000000112347899999999999999999999999999999999


Q ss_pred             ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (368)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~  307 (368)
                      |+|+|...+....+|+.|+|+|.++..    .|+++++.+|+.|+|.|. +.+.|..|+|.+++.+.++++|.||||+++
T Consensus       162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  236 (382)
T PRK14291        162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN  236 (382)
T ss_pred             CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence            999999988889999999999987764    367777899999999995 788999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~  297 (382)
T PRK14291        237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVP  297 (382)
T ss_pred             CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEe
Confidence            9999999999998777889999999999999999999999999999999999999999885

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.8e-62  Score=477.43  Aligned_cols=282  Identities=39%  Similarity=0.781  Sum_probs=242.7

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccccc--C--
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G--  151 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~--~--  151 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+++.+.++++|++|++||++|+|+.+|++||+||+++++...  +  
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~   81 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG   81 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence            469999999999999999999999999999999998777899999999999999999999999999998775321  1  


Q ss_pred             CCCCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647          152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (368)
Q Consensus       152 ~~~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~  231 (368)
                      ++.+.+..++.++|++||+..+|+.   .    .........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        82 g~~~~~~~~~~~~f~~~f~~~~gg~---~----~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~  154 (372)
T PRK14300         82 GNHGGFHPDINDIFGDFFSDFMGGS---R----RSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS  154 (372)
T ss_pred             CCCCccccchhhhHHHHHHhhcCCC---C----CCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence            1111222233356777776432210   0    00010112468899999999999999999999999999999999999


Q ss_pred             ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i  311 (368)
                      |...+....+|+.|+|+|.++..    +|++++..+|+.|+|.|+++.+.|..|+|.|++.+.+.++|.||+|+++|++|
T Consensus       155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI  230 (372)
T ss_pred             ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence            99988889999999999987653    37888889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|+|++...++.+|||||+|.|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus       231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~  287 (372)
T PRK14300        231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVP  287 (372)
T ss_pred             EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence            999999997767789999999999999999999999999999999999999999874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-61  Score=475.60  Aligned_cols=280  Identities=47%  Similarity=0.869  Sum_probs=238.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~   82 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG   82 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence            4699999999999999999999999999999999873 568899999999999999999999999999987753211 11


Q ss_pred             CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcc
Q 017647          154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (368)
Q Consensus       154 ~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~  233 (368)
                      .+.+ .+..|+|++||+..+|+  +.   +  . ......++.|+++.|.|+|||+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        83 ~~~~-~~~~~~f~~~f~~~fgg--~~---~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~  153 (371)
T PRK10767         83 FGGG-GGFGDIFGDIFGDIFGG--GR---G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGA  153 (371)
T ss_pred             CCCc-cccccchhhhhhhhccC--Cc---c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCccc
Confidence            1111 01113344444432221  00   0  0 0112357899999999999999999999999999999999999999


Q ss_pred             ccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (368)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l  313 (368)
                      ..+.....|+.|+|+|.++..+    |+++++.+|+.|+|+|+++.+.|..|.|.|.+.+.+.++|.||+|+++|++|+|
T Consensus       154 ~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~  229 (371)
T PRK10767        154 KPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL  229 (371)
T ss_pred             CCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence            9888888999999999876543    777777899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus       230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~  284 (371)
T PRK10767        230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVP  284 (371)
T ss_pred             ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence            9999997766789999999999999999999999999999999999999999884

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-61  Score=473.27  Aligned_cols=288  Identities=45%  Similarity=0.813  Sum_probs=244.0

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ...|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++....  .
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~--~   80 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ--E   80 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc--c
Confidence            36799999999999999999999999999999999987889999999999999999999999999999887652110  0


Q ss_pred             CCCc-CCCccccccccCCCCCC-CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCc
Q 017647          155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (368)
Q Consensus       155 ~~~~-~~~~d~F~~fFg~~~g~-~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G  232 (368)
                      +.|. .++.++|..|++. ++. |..+   +|+........++.||+++|.|+|+|+|.|+++++.+.+.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G  156 (378)
T PRK14283         81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR  156 (378)
T ss_pred             ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence            1111 1112223322210 000 0000   00000011134688999999999999999999999999999999999999


Q ss_pred             cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                      ...+....+|+.|+|+|.++...++.+|++++..+|+.|.|.|+.+.+.|..|+|.|.+.+.+.++|.||+|+++|++|+
T Consensus       157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~  236 (378)
T PRK14283        157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR  236 (378)
T ss_pred             cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence            98888889999999999999989999999998899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~  292 (378)
T PRK14283        237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVP  292 (378)
T ss_pred             EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEE
Confidence            99999997766779999999999999999999999999999999999999999874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-61  Score=473.48  Aligned_cols=293  Identities=43%  Similarity=0.724  Sum_probs=247.0

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-C
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G  152 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~  152 (368)
                      ...|||++|||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|++||+||+++++.+.+ +
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG   82 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence            35799999999999999999999999999999999974 578999999999999999999999999999987653211 1


Q ss_pred             CCCCCcCCCccccc---cccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccccc
Q 017647          153 GSSAYTTNPFDLFE---TFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT  229 (368)
Q Consensus       153 ~~~~~~~~~~d~F~---~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~  229 (368)
                      +......++.++|+   .+|++.++++.+++..+ +........++.||++.|.|+|+|+|+|+++++.+.+.+.|..|+
T Consensus        83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~-~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~  161 (386)
T PRK14289         83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFG-GGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH  161 (386)
T ss_pred             CCCCCCcChhhhhHHhhhhhcccccCcccccccc-cccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence            11000112223433   33543222211110000 000111234688999999999999999999999999999999999


Q ss_pred             CCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCC
Q 017647          230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS  309 (368)
Q Consensus       230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~  309 (368)
                      |+|.........|+.|+|.|.++..+++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.+.++|.||+|+++|+
T Consensus       162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  241 (386)
T PRK14289        162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM  241 (386)
T ss_pred             CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCC
Confidence            99999888889999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      +|+|+|+|++...++.+|||||+|+|++|+.|+|+++||++++.|+|.|||+|+++.|+
T Consensus       242 ~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~  300 (386)
T PRK14289        242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVP  300 (386)
T ss_pred             EEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEee
Confidence            99999999997767789999999999999999999999999999999999999999874

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9e-61  Score=469.61  Aligned_cols=287  Identities=56%  Similarity=1.010  Sum_probs=248.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~~  154 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|++||+||+++++.+.+ ++.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            4699999999999999999999999999999999988889999999999999999999999999999987753211 000


Q ss_pred             CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (368)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~  234 (368)
                      +.+ ..+.|+|++||++. ++   +++.+.. .+.....++.|+++.|.|+|||+|.|+++++.+.+.+.|..|+|+|..
T Consensus        82 ~~~-~~~~d~f~~~fg~~-~~---~~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~  155 (374)
T PRK14293         82 GDM-GGFADIFETFFSGF-GG---AGGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK  155 (374)
T ss_pred             ccc-cchHHHHHHHhccc-CC---CCCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence            111 11236788888631 11   1100000 011123468899999999999999999999999999999999999999


Q ss_pred             cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (368)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (368)
                      ......+|+.|+|.|.++..+++++|++++..+|+.|.|.|+++.+.|.+|.|.+++.+.++++|.||||+++|++|+|+
T Consensus       156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~  235 (374)
T PRK14293        156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS  235 (374)
T ss_pred             CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence            88888999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+
T Consensus       236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~  289 (374)
T PRK14293        236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVD  289 (374)
T ss_pred             cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEec
Confidence            999987666678999999999999999999999999999999999999999885

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-60  Score=466.44  Aligned_cols=284  Identities=38%  Similarity=0.694  Sum_probs=237.5

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-  152 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-  152 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++..  .+.++|++|++||++|+|+.+|++||+||+++++.+.++ 
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~   81 (365)
T PRK14290          2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF   81 (365)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence            36999999999999999999999999999999998752  688999999999999999999999999999877531111 


Q ss_pred             CCCCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647          153 GSSAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (368)
Q Consensus       153 ~~~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G  230 (368)
                      +.+.+.  .++.|+|+.|||+.+++. .++  +.+. ......++.|+++.|.|+|+|+|.|+++++.+.+.+.|+.|+|
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~~~~~~-~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G  157 (365)
T PRK14290         82 NWDNFTHFSDINDIFNQIFGGNFGSD-FFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG  157 (365)
T ss_pred             cccccccccchhHHHHHHhcCccccc-ccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence            001111  245578888887421110 000  0000 0111234789999999999999999999999999999999999


Q ss_pred             CccccCceeeeCCCCCCccEEEEeeeCCCccee--eeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCC
Q 017647          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS--QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G  308 (368)
                      +|...+ ...+|+.|+|.|.++..+.  +|++.  +..+|+.|.|.|+++.+.|..|+|.+.+.+.++++|.||+|+.+|
T Consensus       158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  234 (365)
T PRK14290        158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN  234 (365)
T ss_pred             ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence            998876 5789999999998776553  56553  358999999999999999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      ++|+|+|+|+.  .++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~  292 (365)
T PRK14290        235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK  292 (365)
T ss_pred             cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEE
Confidence            99999999986  36789999999999999999999999999999999999999999874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.6e-60  Score=464.00  Aligned_cols=281  Identities=41%  Similarity=0.753  Sum_probs=243.5

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CCC
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GSS  155 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~~  155 (368)
                      .|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|++||+||+++.....++ ..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            4899999999999999999999999999999999877899999999999999999999999999998763211010 011


Q ss_pred             CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (368)
Q Consensus       156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~  235 (368)
                      .+..++.|+|+.|||+..  +++    +...   ....++.|+++.+.|+|+|+|+|+++++.+.+...|+.|+|+|...
T Consensus        82 ~~~~d~~d~f~~~fg~~~--~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~  152 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAG--FGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP  152 (371)
T ss_pred             ccCCChHHHHHHhhCCCC--cCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence            112345678888887421  110    0000   1134689999999999999999999999999999999999999877


Q ss_pred             Cce-eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647          236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (368)
Q Consensus       236 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (368)
                      ... ..+|+.|+|+|.+....++.+|++++..+|+.|+|.|..+...|..|.|.+++.+.++++|.||+|+++|++|+|+
T Consensus       153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  232 (371)
T PRK14292        153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA  232 (371)
T ss_pred             CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence            654 7899999999999888888889998889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|++.+.+ . |||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       233 G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~  284 (371)
T PRK14292        233 GMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVP  284 (371)
T ss_pred             cCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEE
Confidence            999997643 3 999999999999999999999999999999999999999884

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-56  Score=420.87  Aligned_cols=268  Identities=44%  Similarity=0.758  Sum_probs=237.5

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS  155 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~  155 (368)
                      ...||+||||+++||++|||||||+||++||||+|+.  +.++|++|++||||||||++|++||+||+++++.+.++++ 
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g-   79 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG-   79 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-
Confidence            4579999999999999999999999999999999964  8999999999999999999999999999999865433221 


Q ss_pred             CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (368)
Q Consensus       156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~  235 (368)
                      .     +. |++||+  +|+.++        +   .+.++.|+.+.+.|+|+|+|.|.+.++.++++.+|+.|.|.|...
T Consensus        80 ~-----~~-f~~~F~--~g~~~~--------~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks  140 (337)
T KOG0712|consen   80 F-----GG-FSQFFG--FGGNGG--------R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS  140 (337)
T ss_pred             C-----cc-HHHhcc--CCCcCc--------c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence            1     11 788887  222111        1   122399999999999999999999999999999999999999887


Q ss_pred             CceeeeCCCCCCccEEEEeeeCCCcceeee-eeCCCCCCccEE--EceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647          236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                      +... .|+.|.|+|..+...++++|+.++. ..|..|+|.|.+  ..+.|+.|.|.+++.+.+.++|.|++|+.+++.|.
T Consensus       141 g~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~  219 (337)
T KOG0712|consen  141 GSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT  219 (337)
T ss_pred             CCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence            6554 8999999999999999999987765 789999999998  46899999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEe
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV  367 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V  367 (368)
                      +.|++++.+ +..+||++|.|..+.|+.|.|+++||++..+|+|.|||+|+...+
T Consensus       220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~  273 (337)
T KOG0712|consen  220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVW  273 (337)
T ss_pred             eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEE
Confidence            999999876 456999999999999999999999999999999999999988765

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.7e-44  Score=340.83  Aligned_cols=211  Identities=43%  Similarity=0.754  Sum_probs=168.9

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC----
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG----  151 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~----  151 (368)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||++++..+..    
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~   82 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP   82 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence            4799999999999999999999999999999999987889999999999999999999999999999875432110    


Q ss_pred             --CCCCCCc----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeec
Q 017647          152 --GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETC  225 (368)
Q Consensus       152 --~~~~~~~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C  225 (368)
                        ++.+.+.    .++.|+|+.|||+. +++++++ ..+... .....++.|+++.+.|+|+|++.|+++++.+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~~-~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-----  154 (291)
T PRK14299         83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGSV-GRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-----  154 (291)
T ss_pred             CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-cccccc-cCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence              0111121    12336788888631 1111110 001100 11235688999999999999999999887541     


Q ss_pred             ccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCC
Q 017647          226 EVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV  305 (368)
Q Consensus       226 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~  305 (368)
                                                                                          .+.++|+||+|+
T Consensus       155 --------------------------------------------------------------------g~~~~V~Ip~G~  166 (291)
T PRK14299        155 --------------------------------------------------------------------GERLSVRIPPGV  166 (291)
T ss_pred             --------------------------------------------------------------------CEEEEEecCCCc
Confidence                                                                                246789999999


Q ss_pred             cCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       306 ~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      ++|++|+|+|+|++.      |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus       167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~  223 (291)
T PRK14299        167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVM  223 (291)
T ss_pred             CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEE
Confidence            999999999999962      999999999999999999999999999999999999999884

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=1.4e-43  Score=339.42  Aligned_cols=222  Identities=33%  Similarity=0.614  Sum_probs=175.7

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccccc----CcccccC-
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVG-  151 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~----g~~~~~~-  151 (368)
                      .|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||..    ++..... 
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~   83 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQH   83 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccccc
Confidence            69999999999999999999999999999999998788999999999999999999999999999854    2221101 


Q ss_pred             CCCCCCc-CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647          152 GGSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (368)
Q Consensus       152 ~~~~~~~-~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G  230 (368)
                      ++...+. .++.++|+.|||.. +   +.     ..  .....++.|+.+++.|+|+|++.|+.+++.+.+.    .|  
T Consensus        84 ~~~~~~~~~~~~~~f~~~~g~~-~---~~-----~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~~--  146 (306)
T PRK10266         84 GDGQSFNAEDFDDIFSSIFGQH-A---RQ-----SR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----VY--  146 (306)
T ss_pred             CCCCCCCCCCHHHHHHHHhCCC-C---CC-----CC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----cc--
Confidence            0111122 23346677777631 1   00     01  1123468899999999999999999999887542    12  


Q ss_pred             CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~  310 (368)
                                     .|.|.+..                                      ...++++|.||+|+++|++
T Consensus       147 ---------------~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~  173 (306)
T PRK10266        147 ---------------NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQR  173 (306)
T ss_pred             ---------------cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcE
Confidence                           22222110                                      1135799999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+|+|++..++..+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus       174 i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~  231 (306)
T PRK10266        174 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVP  231 (306)
T ss_pred             EEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEee
Confidence            9999999997767778999999999999999999999999999999999999999874

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-42  Score=327.33  Aligned_cols=245  Identities=44%  Similarity=0.838  Sum_probs=218.0

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCCCC
Q 017647           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (368)
Q Consensus        78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~~~  157 (368)
                      |||+||||+++|+..|||+||++|||+||||.|.++++.++|++|.+|||+|+|+++|++||+++..+        ...+
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--------~~~~  115 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--------HGEF  115 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--------cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998765        1122


Q ss_pred             cCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCc
Q 017647          158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS  237 (368)
Q Consensus       158 ~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~  237 (368)
                      ..+|+++|..+|++.      +          .....+.++++++.+.|+++..|.++.+.+.....|..|.|.|...+.
T Consensus       116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~  179 (288)
T KOG0715|consen  116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA  179 (288)
T ss_pred             cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence            347899999988751      1          112345678889999999999999999999999999999999999999


Q ss_pred             eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCC
Q 017647          238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG  317 (368)
Q Consensus       238 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G  317 (368)
                      ....|..|.|+|.+......++.++    +|..|.|.|.+..+.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~  255 (288)
T KOG0715|consen  180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG  255 (288)
T ss_pred             ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence            9999999999997665444444333    899999999999999999999998888999999999999999999999987


Q ss_pred             CCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhh
Q 017647          318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD  358 (368)
Q Consensus       318 ~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~e  358 (368)
                      ..        ||+|+|.|.+++.|+|+|.|++++..|++.+
T Consensus       256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            63        9999999999999999999999999998764

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-38  Score=296.01  Aligned_cols=260  Identities=37%  Similarity=0.538  Sum_probs=192.7

Q ss_pred             cccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647           71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (368)
Q Consensus        71 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~  149 (368)
                      ..+...+|||+||||+++|+..|||+||||||++||||+|++ +.|.+.|++|+.||+|||||++|+.||+||+++++..
T Consensus        10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~   89 (336)
T KOG0713|consen   10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE   89 (336)
T ss_pred             hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence            355667899999999999999999999999999999999995 8999999999999999999999999999999998853


Q ss_pred             cCCCCCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccccc
Q 017647          150 VGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT  229 (368)
Q Consensus       150 ~~~~~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~  229 (368)
                      ...+.++  ....++|..||+..+..+++..       ......+|.++...+..++++.|.+...+....+.+.|.. .
T Consensus        90 ~~~~~~g--~~~~~~f~~~f~dfg~~~~g~~-------~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~  159 (336)
T KOG0713|consen   90 NKDGEGG--GGGNDIFSAFFGDFGVTVGGNP-------LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-P  159 (336)
T ss_pred             ccccccC--CcccchHHHhhcccccccCCCc-------ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-C
Confidence            2111111  0114667777664322221111       1112568899999999999999998765554444333321 1


Q ss_pred             CCccccCceeeeCCCCCCccEEEEeeeCCCccee--eeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647          230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS--QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (368)
Q Consensus       230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~  307 (368)
                      |+        .   .|+-+ ..+..++...|.++  |...|.+|..              .+.+.++..+++.+..|...
T Consensus       160 g~--------~---~~~~~-~~~~~~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~  213 (336)
T KOG0713|consen  160 GT--------R---KCNCR-LEMFTQQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDAD  213 (336)
T ss_pred             cc--------c---ccCCh-hhheeeccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccC
Confidence            11        0   12211 12233344444433  2345555555              55566778899999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEe
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV  367 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V  367 (368)
                      +....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.|++.++|.|+.+.+
T Consensus       214 ~~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~  272 (336)
T KOG0713|consen  214 GPEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEI  272 (336)
T ss_pred             CceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHh
Confidence            99999999999876 467999999999999999999999999999999999999987643

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.97  E-value=5.3e-30  Score=260.11  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=95.8

Q ss_pred             CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (368)
Q Consensus       195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (368)
                      .-+|++.|.|+|+++|+|+++++.+.+.+.|    |.|.                                         
T Consensus       656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G~-----------------------------------------  690 (871)
T TIGR03835       656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNTE-----------------------------------------  690 (871)
T ss_pred             ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCCc-----------------------------------------
Confidence            4467889999999999999999998765543    1111                                         


Q ss_pred             cEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEecc
Q 017647          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (368)
Q Consensus       275 G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I  354 (368)
                                    ..+.+.++++|+||+|+++|++|+|+|+|+..+ ++ .|||||+|.+++|+.|+|+|+|||+++.|
T Consensus       691 --------------ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~I  754 (871)
T TIGR03835       691 --------------STTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALV  754 (871)
T ss_pred             --------------ceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEec
Confidence                          112335789999999999999999999999864 33 49999999999999999999999999999


Q ss_pred             CHhhhccCCeEEeC
Q 017647          355 SYLDAIMGTVVKVT  368 (368)
Q Consensus       355 sl~eALlG~~v~V~  368 (368)
                      +|.+||+|+++.|+
T Consensus       755 SL~EALLGgtIeIp  768 (871)
T TIGR03835       755 DPLVAYNGGIIDVF  768 (871)
T ss_pred             CHHHHhcCCEEEee
Confidence            99999999999885

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.1e-20  Score=176.04  Aligned_cols=234  Identities=35%  Similarity=0.503  Sum_probs=159.1

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-  151 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-  151 (368)
                      +..|||++|+|.++|+.+||++||+++|++||||+++..  .+.++|++|.+||++|+|+.+|..||+||+++++.... 
T Consensus         1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~   80 (306)
T KOG0714|consen    1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF   80 (306)
T ss_pred             CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence            357999999999999999999999999999999998766  56668999999999999999999999999977664211 


Q ss_pred             -C--CCC---CCcCCCccccccccCCCCCCC------------------CC---CCCCCCC-Cc-------cCcccccCc
Q 017647          152 -G--GSS---AYTTNPFDLFETFFGPSMGGF------------------PG---MNQTGFR-TR-------RRSTVTKGE  196 (368)
Q Consensus       152 -~--~~~---~~~~~~~d~F~~fFg~~~g~~------------------~g---~~~~~~~-~~-------~~~~~~~g~  196 (368)
                       .  ..+   ....++.++|.+|||......                  ..   ....... .+       .........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (306)
T KOG0714|consen   81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP  160 (306)
T ss_pred             CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence             0  011   123455667777777221100                  00   0000000 00       000001111


Q ss_pred             ceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccE
Q 017647          197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE  276 (368)
Q Consensus       197 di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~  276 (368)
                      .+...+.+++++.+.+..+...+.+...                     ...+                           
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---------------------------  192 (306)
T KOG0714|consen  161 PVEHPLRVSLEDLYKGESKKMKISRQSF---------------------TSNG---------------------------  192 (306)
T ss_pred             CccCCcceeHHHhccccceeeecccccc---------------------cCCc---------------------------
Confidence            1233333366666666655554432111                     0000                           


Q ss_pred             EEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE--ecc
Q 017647          277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI  354 (368)
Q Consensus       277 ~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~--~~I  354 (368)
                                 .........+.+.+.+++..|+.+....+|+..+. ..+-++++.+..++|..|.+.+.+|...  ..|
T Consensus       193 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  260 (306)
T KOG0714|consen  193 -----------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI  260 (306)
T ss_pred             -----------ccccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence                       00112346678999999999999999999987653 5678889999999999999999999999  999


Q ss_pred             CHhhhccCCeEEeC
Q 017647          355 SYLDAIMGTVVKVT  368 (368)
Q Consensus       355 sl~eALlG~~v~V~  368 (368)
                      ++.+|++|....|+
T Consensus       261 s~~~~~~~~~~~~~  274 (306)
T KOG0714|consen  261 SLKEALLGVTVFVP  274 (306)
T ss_pred             ehhhhhcCcceeee
Confidence            99999999987763

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.9e-20  Score=168.15  Aligned_cols=73  Identities=59%  Similarity=0.957  Sum_probs=69.3

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      ..|+|+||||+++|+.++||||||+||++||||++++ +++.++|++||+||+||+||.+|..||+||+.+++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            5689999999999999999999999999999999986 889999999999999999999999999999887664

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=5e-18  Score=153.92  Aligned_cols=69  Identities=59%  Similarity=0.862  Sum_probs=63.9

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      .+..|||+||||+++|+.+|||+|||++|++||||+++...  +.++|+.|++||++|+|+.+|+.||+++
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35679999999999999999999999999999999998543  8899999999999999999999999973

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=3.2e-19  Score=172.13  Aligned_cols=73  Identities=53%  Similarity=0.901  Sum_probs=68.3

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      .+.|||.+|+|+++||.+|||+|||++++.||||+..+    +.|++.|+.|.+|||||+||.+|++||.||++|++
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            35699999999999999999999999999999999864    35889999999999999999999999999999988

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.75  E-value=7.2e-19  Score=183.16  Aligned_cols=77  Identities=36%  Similarity=0.587  Sum_probs=70.9

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      .+....+||+||||+++|+.+|||+|||+||++||||+++...+.++|++|++||+||+||.+|+.||+||..+++.
T Consensus       568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            34456899999999999999999999999999999999987778899999999999999999999999999887653

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.73  E-value=2.9e-18  Score=126.31  Aligned_cols=62  Identities=53%  Similarity=0.879  Sum_probs=59.0

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccchhhhhhhc
Q 017647           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD  139 (368)
Q Consensus        78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd  139 (368)
                      |||+||||+++++.+|||++|+++++++|||++....  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6999999999999999999999999999999987644  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.9e-18  Score=158.56  Aligned_cols=88  Identities=49%  Similarity=0.762  Sum_probs=76.7

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ..|||++|||+.+|+.+||++|||+.|++||||+|++ |.|.++|+.+.+||+||+|+.+|+.||+++..+....     
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence            6799999999999999999999999999999999984 7899999999999999999999999999987664322     


Q ss_pred             CCCcCCCccccccccC
Q 017647          155 SAYTTNPFDLFETFFG  170 (368)
Q Consensus       155 ~~~~~~~~d~F~~fFg  170 (368)
                        -..+++++|...|+
T Consensus        79 --~~~d~~~~~r~~f~   92 (296)
T KOG0691|consen   79 --GREDQADGFRKKFG   92 (296)
T ss_pred             --hhhhHHHHHHHHhh
Confidence              12356677777666

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.9e-17  Score=157.09  Aligned_cols=120  Identities=29%  Similarity=0.632  Sum_probs=99.7

Q ss_pred             ceeecccccCCccccCce-------eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE--
Q 017647          221 HLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI--  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v--  291 (368)
                      ..++|+.|+|+|.....+       ..+|+.|+|+|+++.            .+|+.|+|.|.+.+..-.+++.+..+  
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~  225 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD  225 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence            678999999999753333       678999999999875            78999999999877666655544333  


Q ss_pred             -------------------------------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647          292 -------------------------------------------------------------RLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       292 -------------------------------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (368)
                                                                                   +....++|+||+|+++|++
T Consensus       226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~  305 (371)
T COG0484         226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV  305 (371)
T ss_pred             CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence                                                                         3445599999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      ++|+|+|++..++...|||||+|.|..|..+..++..|+.++
T Consensus       306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~  347 (371)
T COG0484         306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEF  347 (371)
T ss_pred             EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            999999999887777899999999999999998887776543

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.3e-17  Score=161.03  Aligned_cols=74  Identities=50%  Similarity=0.728  Sum_probs=66.9

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      .+.+.||+||||.++|+..|||++||+||++||||+|++  .++.++|+.|+.||+|||||+.|+-||..-++-|.
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~   80 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR   80 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence            356789999999999999999999999999999999886  57899999999999999999999999987665443

>PHA03102 Small T antigen; Reviewed

Probab=99.67  E-value=5.9e-17  Score=138.39  Aligned_cols=84  Identities=25%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             cccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647           77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (368)
Q Consensus        77 ~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~  154 (368)
                      ..+|+||||+++|  |.+|||+|||++|+++|||++   +..++|++|++||++|+|+.+|..||.+|.+......    
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~----   77 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE----   77 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCccccccc----
Confidence            4689999999999  999999999999999999997   4568999999999999999999999999976543211    


Q ss_pred             CCCcCCCccccccccCC
Q 017647          155 SAYTTNPFDLFETFFGP  171 (368)
Q Consensus       155 ~~~~~~~~d~F~~fFg~  171 (368)
                          ..|.++|...||+
T Consensus        78 ----~~~~~~f~~~fg~   90 (153)
T PHA03102         78 ----DVPSGYVGATFGD   90 (153)
T ss_pred             ----ccHHHHhhhhcCC
Confidence                1266667666653

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.4e-17  Score=144.29  Aligned_cols=70  Identities=50%  Similarity=0.815  Sum_probs=64.3

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~  144 (368)
                      +..|+|+||||.++|+..+|++||++|++++|||++++   ..+.++|+.|+.||+||+|.++|++||+.|.-
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            34599999999999999999999999999999999963   46889999999999999999999999998743

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.64  E-value=3.3e-16  Score=147.02  Aligned_cols=73  Identities=48%  Similarity=0.747  Sum_probs=66.3

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      ..+|||+||||.++|+..||-||||++|.+||||...++    .++++|..|..|-|||+||++|..||. |++.++.
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~  468 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP  468 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence            457999999999999999999999999999999988753    488999999999999999999999998 7776664

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.64  E-value=2.8e-16  Score=114.04  Aligned_cols=58  Identities=66%  Similarity=0.950  Sum_probs=53.7

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhccchhh
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK  134 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~--~~~~~~~f~~i~~Ay~~L~d~~~  134 (368)
                      .|||+||||+++++.++||+||+++++++|||++.  .+.+.+.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            48999999999999999999999999999999987  46788999999999999999853

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.8e-16  Score=138.65  Aligned_cols=70  Identities=43%  Similarity=0.713  Sum_probs=65.3

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g  145 (368)
                      ..||||||||+++|+++|||+|||+|.+++|||+++. .+.++.|.+|++||+.|+|+..|..|.+||+..
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            4599999999999999999999999999999999987 677788999999999999999999999999754

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.62  E-value=7e-16  Score=109.84  Aligned_cols=54  Identities=70%  Similarity=1.073  Sum_probs=51.3

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccc
Q 017647           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD  131 (368)
Q Consensus        78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d  131 (368)
                      |||++|||+++++.++||++|++|++++|||++.. +.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999876 6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.8e-15  Score=147.45  Aligned_cols=119  Identities=29%  Similarity=0.539  Sum_probs=92.1

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|.|+++.            ..|+.|+|.|.+....-..+..+..+
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  235 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV  235 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence            35789999999965322         2568999999998865            67999999997665433222211111


Q ss_pred             ---------------------------------------------------------------E-EeeEEEEEeCCCCcC
Q 017647          292 ---------------------------------------------------------------R-LKKNIKVKVPPGVST  307 (368)
Q Consensus       292 ---------------------------------------------------------------~-~~~~l~V~Ip~G~~~  307 (368)
                                                                                     . ..+.++|+||+|+++
T Consensus       236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~  315 (369)
T PRK14282        236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP  315 (369)
T ss_pred             CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence                                                                           1 234689999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      |++|+|+|+|++...++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus       316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999865455689999999999999999999988654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.8e-15  Score=146.30  Aligned_cols=120  Identities=29%  Similarity=0.582  Sum_probs=94.8

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|.|+++.            ..|+.|+|.|.+....-..+..+.++
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  231 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA  231 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence            45789999999964322         1468999999998865            68999999998766533333221111


Q ss_pred             -------------------------------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647          292 -------------------------------------------------------------RLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       292 -------------------------------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (368)
                                                                                   ...+.++|+||+|+++|++
T Consensus       232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~  311 (365)
T PRK14290        232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV  311 (365)
T ss_pred             CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence                                                                         2345689999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      |+|+|+|++.+.+..+|||||+|+|..|+.|++++.+|+.++
T Consensus       312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999765556899999999999999999999987664

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=5.3e-15  Score=145.68  Aligned_cols=120  Identities=30%  Similarity=0.548  Sum_probs=93.1

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-..+..+.++
T Consensus       157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~  224 (377)
T PRK14298        157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGA  224 (377)
T ss_pred             CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCC
Confidence            34679999999965321         2578999999998765            67999999998765433333221111


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     +.++.++|+||+|+++|
T Consensus       225 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g  304 (377)
T PRK14298        225 DSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTH  304 (377)
T ss_pred             CCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccC
Confidence                                                                           22345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      ++++|+|+|++...+...|||||+|+|..|+.|++++.+|+.++
T Consensus       305 ~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        305 SVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999765556899999999999999999998887654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=6.7e-15  Score=144.62  Aligned_cols=121  Identities=27%  Similarity=0.537  Sum_probs=93.2

Q ss_pred             ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|..|+|.|.+.+..-..+..+.++    
T Consensus       160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (366)
T PRK14294        160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGS  227 (366)
T ss_pred             CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence            35689999999965321     2578999999998865            67999999998765433222211111    


Q ss_pred             -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647          292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                                                                                 +.++.++|+||+|+++|++|+
T Consensus       228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ir  307 (366)
T PRK14294        228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFR  307 (366)
T ss_pred             EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEE
Confidence                                                                       223457999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEec
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS  353 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~  353 (368)
                      |+|+|++...+..+|||||+|+|..|+.|++++.+|+.++.
T Consensus       308 i~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~  348 (366)
T PRK14294        308 FKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA  348 (366)
T ss_pred             ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999997655568999999999999999999988876543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=1.1e-14  Score=143.47  Aligned_cols=120  Identities=30%  Similarity=0.614  Sum_probs=93.5

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+.......+....++    
T Consensus       158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  225 (371)
T PRK10767        158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGD  225 (371)
T ss_pred             CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence            3468999999996431     13568999999998765            67999999998765433333221111    


Q ss_pred             -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647          292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                                                                                 ..++.++|+||+|+++|++++
T Consensus       226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~  305 (371)
T PRK10767        226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFR  305 (371)
T ss_pred             EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEE
Confidence                                                                       223468999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      |+|+|++...++..|||||+|+|..|+.|++++.+|+.++
T Consensus       306 i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        306 LRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             ECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999765566899999999999999999998887654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=1.2e-14  Score=143.02  Aligned_cols=120  Identities=26%  Similarity=0.496  Sum_probs=91.8

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|.|+++.            ..|+.|+|.|.+.+..-..+.....+    
T Consensus       160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (373)
T PRK14301        160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGS  227 (373)
T ss_pred             CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence            4568999999996532     12678999999999875            67999999998765432222211111    


Q ss_pred             -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647          292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                                                                                 +.++.++|+||+|+++|++++
T Consensus       228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~r  307 (373)
T PRK14301        228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFR  307 (373)
T ss_pred             EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEE
Confidence                                                                       233458999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      |+|+|++...+..+|||||+|+|..|+.++.++.+|+.++
T Consensus       308 i~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l  347 (373)
T PRK14301        308 LRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREF  347 (373)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999765556899999999999998888877665543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=5.4e-15  Score=145.11  Aligned_cols=120  Identities=23%  Similarity=0.483  Sum_probs=92.2

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|.|.++.            ..|..|+|.|.+.+..-..+..+..+    
T Consensus       162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  229 (365)
T PRK14285        162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQ  229 (365)
T ss_pred             CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCC
Confidence            3568999999996432     23678999999998865            68999999998765433332211111    


Q ss_pred             -----------------------------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647          292 -----------------------------------------------------------R-LKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       292 -----------------------------------------------------------~-~~~~l~V~Ip~G~~~G~~i  311 (368)
                                                                                 + ..+.++|.||+|+++|++|
T Consensus       230 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~i  309 (365)
T PRK14285        230 QIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQI  309 (365)
T ss_pred             EEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEE
Confidence                                                                       2 2347999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      +|+|+|++.+.+...|||||+|+|+.|+.|++++..|+.++
T Consensus       310 rl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l  350 (365)
T PRK14285        310 IIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL  350 (365)
T ss_pred             EECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999765555799999999999999999987766543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.4e-14  Score=143.49  Aligned_cols=120  Identities=27%  Similarity=0.608  Sum_probs=92.6

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|.|+++.            ..|+.|+|.|.+.+..-..+..+.++    
T Consensus       174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  241 (391)
T PRK14284        174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGM  241 (391)
T ss_pred             CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCC
Confidence            3578999999996432     12568999999998765            67999999998765433333222211    


Q ss_pred             -----------------------------------------------------------EEe--eEEEEEeCCCCcCCCE
Q 017647          292 -----------------------------------------------------------RLK--KNIKVKVPPGVSTGSI  310 (368)
Q Consensus       292 -----------------------------------------------------------~~~--~~l~V~Ip~G~~~G~~  310 (368)
                                                                                 +..  +.++|+||+|+++|++
T Consensus       242 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~  321 (391)
T PRK14284        242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTI  321 (391)
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeE
Confidence                                                                       222  6789999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      ++|+|+|++...+..+|||||+|+|..|+.++.++.+|+.++
T Consensus       322 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  363 (391)
T PRK14284        322 LKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF  363 (391)
T ss_pred             EEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999765556899999999999999988877765543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=2.8e-14  Score=140.63  Aligned_cols=119  Identities=27%  Similarity=0.551  Sum_probs=90.7

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+..-..+..+..+
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  222 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV  222 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence            45689999999964321         2568999999999875            67999999998765433322211111


Q ss_pred             ---------------------------------------------------------------EE-eeEEEEEeCCCCcC
Q 017647          292 ---------------------------------------------------------------RL-KKNIKVKVPPGVST  307 (368)
Q Consensus       292 ---------------------------------------------------------------~~-~~~l~V~Ip~G~~~  307 (368)
                                                                                     +. .+.++|+||+|+++
T Consensus       223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~  302 (378)
T PRK14278        223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP  302 (378)
T ss_pred             CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence                                                                           22 56789999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      |++++|+|+|++...+...|||||+|+|..|..+..++..|+..
T Consensus       303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~  346 (378)
T PRK14278        303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRE  346 (378)
T ss_pred             CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            99999999999976555689999999999998888777665544

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.7e-14  Score=141.91  Aligned_cols=119  Identities=23%  Similarity=0.506  Sum_probs=90.9

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|+|.++.            ..|+.|+|.|.+....-.++..+.++    
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  228 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT  228 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence            3578999999997532     12568999999999875            68999999999765433222211110    


Q ss_pred             -----------------------------------------------------------EEe-eEEEEEeCCCCcCCCEE
Q 017647          292 -----------------------------------------------------------RLK-KNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       292 -----------------------------------------------------------~~~-~~l~V~Ip~G~~~G~~i  311 (368)
                                                                                 ... +.++|+||+|+++|++|
T Consensus       229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i  308 (372)
T PRK14300        229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL  308 (372)
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence                                                                       222 57999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      +|+|+|++.+.+..+|||||+|+|+.|..|+.++..|+..
T Consensus       309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~  348 (372)
T PRK14300        309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEE  348 (372)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999876556789999999999999888777665544

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.9e-14  Score=140.12  Aligned_cols=119  Identities=24%  Similarity=0.481  Sum_probs=90.5

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|.|+|+++.            ..|+.|+|.|.+....-..+..+.++    
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~  222 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN  222 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence            4578999999996422     12468999999999865            67999999998766533333222111    


Q ss_pred             ----------------------------------------------------------EE-eeEEEEEeCCCCcCCCEEE
Q 017647          292 ----------------------------------------------------------RL-KKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       292 ----------------------------------------------------------~~-~~~l~V~Ip~G~~~G~~i~  312 (368)
                                                                                +. ...++|+||+|+++|++++
T Consensus       223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence                                                                      22 3368999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      |+|+|++.+.+...|||||+|+|+.|+.++.++..++.+
T Consensus       303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~  341 (369)
T PRK14288        303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEK  341 (369)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            999999976544579999999999999988777655443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2e-14  Score=141.37  Aligned_cols=120  Identities=28%  Similarity=0.573  Sum_probs=92.0

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|.|+|+++.            ..|..|+|.|.+.......+....++
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  221 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI  221 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence            45689999999965321         2568999999999865            67999999998765433333222111


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     ..++.++|+||+|+++|
T Consensus       222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g  301 (371)
T PRK14287        222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG  301 (371)
T ss_pred             CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence                                                                           23345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      ++|+|+|+|++...+...|||||+|+|..|+.+++++..|+.++
T Consensus       302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  345 (371)
T PRK14287        302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF  345 (371)
T ss_pred             cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            99999999999765556899999999999999998887665543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=2.6e-14  Score=141.09  Aligned_cols=119  Identities=23%  Similarity=0.493  Sum_probs=90.1

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+.....+....++
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~  229 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGV  229 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCc
Confidence            34689999999965321         2568999999998875            67999999998765433333222211


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     ..++.++|+||+|+++|
T Consensus       230 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g  309 (380)
T PRK14276        230 ETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTG  309 (380)
T ss_pred             cCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCC
Confidence                                                                           23345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++++|+|+|++...+..+|||||+|+|..|..+..++..++.+
T Consensus       310 ~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~  352 (380)
T PRK14276        310 KKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKA  352 (380)
T ss_pred             CEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999976555689999999999998887766555443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3e-14  Score=141.28  Aligned_cols=119  Identities=31%  Similarity=0.625  Sum_probs=90.7

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-..+..+..+
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  245 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV  245 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence            45789999999965322         2568999999999875            67999999998765433333211111


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     +.++.++|+||+|+++|
T Consensus       246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G  325 (397)
T PRK14281        246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE  325 (397)
T ss_pred             CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence                                                                           23355899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++++|+|+|++...++..|||||+|+|..|..++.++..|+.+
T Consensus       326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~  368 (397)
T PRK14281        326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKE  368 (397)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            9999999999976555689999999999999887776655444

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.5e-14  Score=139.67  Aligned_cols=119  Identities=30%  Similarity=0.535  Sum_probs=89.9

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec---------
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS---------  286 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~---------  286 (368)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+.+..-..+.         
T Consensus       166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~  233 (372)
T PRK14286        166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGS  233 (372)
T ss_pred             CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCC
Confidence            3468999999996422     13568999999999875            679999999987654222221         


Q ss_pred             -----cceE----------E---------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647          287 -----GEGR----------I---------------------------------------R-LKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       287 -----g~g~----------v---------------------------------------~-~~~~l~V~Ip~G~~~G~~i  311 (368)
                           |+|.          +                                       + +.+.++|+||+|+++|+++
T Consensus       234 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~  313 (372)
T PRK14286        234 RLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVF  313 (372)
T ss_pred             EEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEE
Confidence                 1110          0                                       1 2346899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      +|+|+|++...+...|||||+|+|..|+.++.++.+|+.+
T Consensus       314 ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~  353 (372)
T PRK14286        314 RLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE  353 (372)
T ss_pred             EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999976555689999999999999888877766543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.50  E-value=3.3e-14  Score=139.30  Aligned_cols=116  Identities=32%  Similarity=0.724  Sum_probs=88.6

Q ss_pred             eeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec------
Q 017647          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS------  286 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~------  286 (368)
                      ...|..|+|+|.....         ...+|+.|.|+|++++            ..|+.|+|.|.+.+..-..+.      
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~  227 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD  227 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence            5789999999964321         2468999999998865            579999999987654222221      


Q ss_pred             --------cceE----------E---------------------------------------EEeeEEEEEeCCCCcCCC
Q 017647          287 --------GEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGS  309 (368)
Q Consensus       287 --------g~g~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (368)
                              |+|.          +                                       ..++.++|.||+|+++|+
T Consensus       228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~  307 (354)
T TIGR02349       228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT  307 (354)
T ss_pred             CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence                    1110          0                                       123468999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceE
Q 017647          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (368)
Q Consensus       310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~  349 (368)
                      +++|+|+|++...+..+|||||+|+|..|+.+++++.+++
T Consensus       308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l  347 (354)
T TIGR02349       308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL  347 (354)
T ss_pred             EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999765557899999999999999988887654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=3.7e-14  Score=140.36  Aligned_cols=118  Identities=27%  Similarity=0.532  Sum_probs=89.6

Q ss_pred             ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|..|+|.|.+.+..-..+..+..+    
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  256 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ  256 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence            45789999999975322     2578999999999876            68999999998765432222211110    


Q ss_pred             -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647          292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (368)
Q Consensus       292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (368)
                                                                                 ...+.++|+||+|+++|++|+
T Consensus       257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir  336 (392)
T PRK14279        257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR  336 (392)
T ss_pred             EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence                                                                       233558999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      |+|+|++.. ++.+|||||+|+|..|+.+..++..|+..
T Consensus       337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~  374 (392)
T PRK14279        337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEA  374 (392)
T ss_pred             ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            999999964 45689999999999998887777665543

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=7.2e-14  Score=137.73  Aligned_cols=119  Identities=29%  Similarity=0.567  Sum_probs=89.3

Q ss_pred             ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|....         ....+|+.|+|+|+++.            ..|+.|+|.|.+.+..-..+....++
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~  226 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV  226 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence            3568999999996421         12568999999998865            67999999998765433332211111


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     ..++.++|+||+|+++|
T Consensus       227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g  306 (376)
T PRK14280        227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG  306 (376)
T ss_pred             cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence                                                                           23345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++++|+|+|++...+...|||||+|+|..|+.++.++..|+.+
T Consensus       307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~  349 (376)
T PRK14280        307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE  349 (376)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999976555689999999999998887666555443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=8.2e-14  Score=137.81  Aligned_cols=119  Identities=29%  Similarity=0.558  Sum_probs=90.0

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|..|+|.|.+.+..-..+....++
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  238 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGI  238 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCc
Confidence            35789999999965321         2468999999999875            67999999998765433333221111


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     +.++.++|.||+|+++|
T Consensus       239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g  318 (386)
T PRK14277        239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTG  318 (386)
T ss_pred             cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCC
Confidence                                                                           22344799999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++++|+|+|++...+...|||||+|+|..|..++.++.+++.+
T Consensus       319 ~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~  361 (386)
T PRK14277        319 TKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLRE  361 (386)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence            9999999999876555679999999999998887777665444

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.47  E-value=7.5e-14  Score=103.33  Aligned_cols=65  Identities=49%  Similarity=1.107  Sum_probs=54.9

Q ss_pred             cccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE-ceeeeeeccce
Q 017647          225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG  289 (368)
Q Consensus       225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~g~g  289 (368)
                      |+.|+|+|+..+..+.+|+.|+|+|.++..+++++++++++.+|+.|+|+|+++ .++|..|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999999999999999999999998888888999999999999999999 99999999975

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=7.3e-14  Score=137.39  Aligned_cols=118  Identities=20%  Similarity=0.492  Sum_probs=87.8

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+..-..+..+..+
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  232 (372)
T PRK14296        165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGI  232 (372)
T ss_pred             CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCC
Confidence            35689999999975322         2468999999999876            67999999997655422222211111


Q ss_pred             ----------------------------------------------------------------EEeeEEEEEeCCCCcC
Q 017647          292 ----------------------------------------------------------------RLKKNIKVKVPPGVST  307 (368)
Q Consensus       292 ----------------------------------------------------------------~~~~~l~V~Ip~G~~~  307 (368)
                                                                                      +.++.++|+||+|+++
T Consensus       233 ~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~  312 (372)
T PRK14296        233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINS  312 (372)
T ss_pred             CCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCC
Confidence                                                                            2334589999999999


Q ss_pred             CCEEEEccCCCCCC-CCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647          308 GSILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (368)
Q Consensus       308 G~~i~l~g~G~~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~  350 (368)
                      |++++|+|+|++.. ..+..|||||+|+|..|+.+..++..|+.
T Consensus       313 g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  356 (372)
T PRK14296        313 NELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIE  356 (372)
T ss_pred             CcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence            99999999999843 23457999999999999888777666544

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=8e-14  Score=137.66  Aligned_cols=117  Identities=26%  Similarity=0.526  Sum_probs=89.3

Q ss_pred             eeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE-
Q 017647          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI-  291 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v-  291 (368)
                      ...|+.|+|+|....         ....+|+.|+|+|.++.            ..|..|+|.|.+.+..-..+..+..+ 
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~  232 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD  232 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence            568999999996532         13578999999998765            67999999997655433333322111 


Q ss_pred             --------------------------------------------------------------EEeeEEEEEeCCCCcCCC
Q 017647          292 --------------------------------------------------------------RLKKNIKVKVPPGVSTGS  309 (368)
Q Consensus       292 --------------------------------------------------------------~~~~~l~V~Ip~G~~~G~  309 (368)
                                                                                    ..++.++|+||+|+++|+
T Consensus       233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~  312 (380)
T PRK14297        233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT  312 (380)
T ss_pred             CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence                                                                          233558999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (368)
Q Consensus       310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~  350 (368)
                      +++|+|+|++...+...|||||+|+|..|+.+..++..|+.
T Consensus       313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~  353 (380)
T PRK14297        313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALT  353 (380)
T ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHH
Confidence            99999999997655568999999999999888777665543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=9.8e-14  Score=137.38  Aligned_cols=117  Identities=30%  Similarity=0.600  Sum_probs=88.8

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec-----
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS-----  286 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~-----  286 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+....-..+.     
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  237 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV  237 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence            45789999999975422         2568999999998765            679999999987654222222     


Q ss_pred             ---------cceE----------E---------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          287 ---------GEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       287 ---------g~g~----------v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                               |.|.          .                                       ...+.++|.||+|+++|
T Consensus       238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g  317 (386)
T PRK14289        238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG  317 (386)
T ss_pred             CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence                     1111          0                                       22456899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~  349 (368)
                      ++++|+|+|.+...++.+|||||+|+|+.|..+..++..|+
T Consensus       318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l  358 (386)
T PRK14289        318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTL  358 (386)
T ss_pred             cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHH
Confidence            99999999999765567899999999999987776665544

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=1.2e-13  Score=136.62  Aligned_cols=118  Identities=29%  Similarity=0.552  Sum_probs=88.9

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            ..|..|.|.|.+.+..-..+..+..+    
T Consensus       182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~  249 (389)
T PRK14295        182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ  249 (389)
T ss_pred             CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence            3578999999996422     12568999999999876            68999999998765433222211111    


Q ss_pred             -----------------------------------------------------------EE-eeEEEEEeCCCCcCCCEE
Q 017647          292 -----------------------------------------------------------RL-KKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       292 -----------------------------------------------------------~~-~~~l~V~Ip~G~~~G~~i  311 (368)
                                                                                 +. .+.++|+||+|+++|++|
T Consensus       250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i  329 (389)
T PRK14295        250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL  329 (389)
T ss_pred             EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence                                                                       12 247999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      +|+|+|++.. ++.+|||||+|+|..|+.+..++..|+.+
T Consensus       330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~  368 (389)
T PRK14295        330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEA  368 (389)
T ss_pred             EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999964 45689999999999998887766655543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.1e-13  Score=136.38  Aligned_cols=120  Identities=25%  Similarity=0.528  Sum_probs=90.7

Q ss_pred             ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec-----
Q 017647          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS-----  286 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~-----  286 (368)
                      ....|+.|+|+|....         ....+|+.|.|.|+++.            ..|..|.|.|.+.+..-..+.     
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~  226 (374)
T PRK14293        159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGV  226 (374)
T ss_pred             CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCC
Confidence            3468999999996431         12468999999999865            679999999987553222221     


Q ss_pred             ---------cceE------------E-------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          287 ---------GEGR------------I-------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       287 ---------g~g~------------v-------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                               |.|.            +                                     ..++.++|+||+|+++|
T Consensus       227 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g  306 (374)
T PRK14293        227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPN  306 (374)
T ss_pred             CCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCC
Confidence                     1110            0                                     22345789999999999


Q ss_pred             CEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647          309 SILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~  352 (368)
                      ++++|+|+|++...+ +..|||||+|+|..|+.+++++.+|+.++
T Consensus       307 ~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        307 TVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             CEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999996543 35799999999999999999998877654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.6e-13  Score=135.36  Aligned_cols=119  Identities=24%  Similarity=0.530  Sum_probs=89.4

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|..+.            ..|..|+|.|.+....-..+....++
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~  229 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGV  229 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCC
Confidence            34689999999975321         2568999999998865            67999999998765433333221110


Q ss_pred             ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647          292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG  308 (368)
Q Consensus       292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G  308 (368)
                                                                                     +.++.++|.||+|+++|
T Consensus       230 ~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g  309 (378)
T PRK14283        230 ETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSG  309 (378)
T ss_pred             CCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCC
Confidence                                                                           23446899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++++|+|+|++...+...|||||+|+|..|+.++.++..|+.+
T Consensus       310 ~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~  352 (378)
T PRK14283        310 TTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE  352 (378)
T ss_pred             CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence            9999999999876555689999999999998877766555443

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.6e-13  Score=120.58  Aligned_cols=64  Identities=31%  Similarity=0.517  Sum_probs=56.7

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      .|||++|||++.  ++..+|+++||+|++++|||+....      .+.+.|..||+||++|+||.+|+.|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999995  7889999999999999999997532      145689999999999999999999984

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.5e-13  Score=120.07  Aligned_cols=64  Identities=31%  Similarity=0.472  Sum_probs=56.2

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      .|||++|||++.  ++.++|+++||+|++++|||++....    +...+..||+||++|+||.+|+.|+-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            589999999996  78999999999999999999986421    23457899999999999999999985

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.44  E-value=2e-13  Score=135.82  Aligned_cols=119  Identities=22%  Similarity=0.508  Sum_probs=88.4

Q ss_pred             ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ....|+.|+|+|....         ....+|+.|+|+|+++...          ..|+.|+|.|.+....-..+..+.++
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~  234 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV  234 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence            4578999999996321         1246899999999987522          68999999998866543333322221


Q ss_pred             --------------------------------------------------------------E-EeeEEEEEeCCC--Cc
Q 017647          292 --------------------------------------------------------------R-LKKNIKVKVPPG--VS  306 (368)
Q Consensus       292 --------------------------------------------------------------~-~~~~l~V~Ip~G--~~  306 (368)
                                                                                    . +.+.|+|+||+|  ++
T Consensus       235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~  314 (421)
T PTZ00037        235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK  314 (421)
T ss_pred             CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence                                                                          2 234689999999  99


Q ss_pred             CCCEEEEccCCCCCCCC-CCCccEEEEEEEEeC--CCcccccCceE
Q 017647          307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGIDLF  349 (368)
Q Consensus       307 ~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~--~~f~r~g~dL~  349 (368)
                      +|++++|+|+|++..++ +..|||||+|+|..|  ..++.+...|+
T Consensus       315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll  360 (421)
T PTZ00037        315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEIL  360 (421)
T ss_pred             CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHH
Confidence            99999999999996543 457999999999999  77776655443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1e-13  Score=133.12  Aligned_cols=89  Identities=43%  Similarity=0.717  Sum_probs=72.2

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG  152 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~  152 (368)
                      .-+|||.|||+.++|+..|||+|||++|+.+|||++..  .+++.+|++|-+||.+|+||.+|..||. |.. +.....+
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~~~~  448 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEVGSG  448 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhhcCC
Confidence            35699999999999999999999999999999999863  5788999999999999999999999997 221 1111111


Q ss_pred             CCCCCcCCCccccccc
Q 017647          153 GSSAYTTNPFDLFETF  168 (368)
Q Consensus       153 ~~~~~~~~~~d~F~~f  168 (368)
                         +-+.+|+++|..|
T Consensus       449 ---~a~~dp~~~~~a~  461 (486)
T KOG0550|consen  449 ---GAGFDPFNIFRAF  461 (486)
T ss_pred             ---CcCcChhhhhhhc
Confidence               1245788887766

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7.7e-14  Score=125.60  Aligned_cols=70  Identities=41%  Similarity=0.772  Sum_probs=65.8

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY  141 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~  141 (368)
                      +-+...|.|+||||+++++..||++|||+||+++|||++++++..+.|+.|..||++|.|...|..||-+
T Consensus        28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            4456789999999999999999999999999999999999988899999999999999999999999954

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.3e-13  Score=133.68  Aligned_cols=67  Identities=42%  Similarity=0.606  Sum_probs=64.4

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      ..|.|.+|||++++++++|||.||++|...|||+|..+.|+|.|+.|+.||++|+|+.+|..||.--
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999743

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=3.6e-13  Score=132.71  Aligned_cols=119  Identities=26%  Similarity=0.563  Sum_probs=89.3

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee--------
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR--------  283 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~--------  283 (368)
                      ....|..|+|+|.....         ...+|+.|+|.|..+.            ..|..|.|.|.+....-.        
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  223 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGI  223 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCC
Confidence            35789999999965422         1468999999998764            689999999987543222        


Q ss_pred             ------eeccceE--------E---------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647          284 ------KCSGEGR--------I---------------------------------------RLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       284 ------~C~g~g~--------v---------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (368)
                            ...|.|.        +                                       ..++.++|.||+|+++|++
T Consensus       224 ~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~  303 (371)
T PRK14292        224 DEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDL  303 (371)
T ss_pred             CCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcE
Confidence                  2222221        0                                       1234457999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                      ++|+|+|++...+..+|||||+|+|+.|+.++.+...|+..
T Consensus       304 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  344 (371)
T PRK14292        304 HRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEA  344 (371)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999976666689999999999999888877665543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=5.8e-13  Score=131.62  Aligned_cols=109  Identities=32%  Similarity=0.576  Sum_probs=82.1

Q ss_pred             ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI----  291 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v----  291 (368)
                      ....|+.|+|+|....     ....+|+.|+|+|. ++            ..|..|+|.|.+....-.++..+.++    
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  238 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS  238 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence            4578999999996532     12578999999995 33            67999999998765433333211111    


Q ss_pred             -----------------------------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647          292 -----------------------------------------------------------R-LKKNIKVKVPPGVSTGSIL  311 (368)
Q Consensus       292 -----------------------------------------------------------~-~~~~l~V~Ip~G~~~G~~i  311 (368)
                                                                                 . ....++|.||+|+++|++|
T Consensus       239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i  318 (382)
T PRK14291        239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI  318 (382)
T ss_pred             EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence                                                                       1 2346899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeCC--Ccc
Q 017647          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP--GIQ  342 (368)
Q Consensus       312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~--~f~  342 (368)
                      +|+|+|++...+..+|||||+|+|..|.  .+.
T Consensus       319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls  351 (382)
T PRK14291        319 RVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS  351 (382)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence            9999999976555689999999999986  366

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.38  E-value=7.8e-13  Score=116.06  Aligned_cols=65  Identities=28%  Similarity=0.405  Sum_probs=57.9

Q ss_pred             ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      ..|||++|||++.  .+..+|+++||+|++++|||++....      +.+.|..||+||++|+||.+|+.|+-
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5699999999996  67899999999999999999975422      45679999999999999999999995

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=8.9e-13  Score=116.16  Aligned_cols=65  Identities=31%  Similarity=0.434  Sum_probs=56.3

Q ss_pred             ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKE-PG-----ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~-~~-----~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      ..|||++|||++.  ++..+|+++||+|++++|||++.. +.     +.+.+..||+||++|+||.+|+.|+-
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3699999999995  689999999999999999999863 22     23446899999999999999999995

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.35  E-value=9.4e-13  Score=106.96  Aligned_cols=51  Identities=27%  Similarity=0.429  Sum_probs=47.7

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~  130 (368)
                      .++|+||||+++++.+|||++||+|++++|||+.   ++.+.|++|++||++|.
T Consensus        65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999985   56788999999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.25  E-value=5.3e-12  Score=118.67  Aligned_cols=57  Identities=46%  Similarity=0.609  Sum_probs=51.1

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhccch
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSDD  132 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~f~~i~~Ay~~L~d~  132 (368)
                      ..|+|+||||++++|.+|||+|||+|+++||||++..        +.++++|++|++||++|+..
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3699999999999999999999999999999999642        24789999999999999863

>PHA02624 large T antigen; Provisional

Probab=99.23  E-value=8.3e-12  Score=126.92  Aligned_cols=60  Identities=32%  Similarity=0.538  Sum_probs=56.5

Q ss_pred             ccccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhh
Q 017647           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY  138 (368)
Q Consensus        76 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~y  138 (368)
                      ..++|++|||+++|  +.+|||+|||++|++||||++   ++.++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            35899999999999  999999999999999999996   4578999999999999999999999

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.16  E-value=4.2e-11  Score=92.36  Aligned_cols=52  Identities=40%  Similarity=0.712  Sum_probs=41.1

Q ss_pred             eEEEEEeCCCCcCCCEEEEccCCCCCCCCC-CCccEEEEEEEEeCCCcccccC
Q 017647          295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRDGI  346 (368)
Q Consensus       295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~-~~GDL~v~i~v~~~~~f~r~g~  346 (368)
                      +.++|+||+|+++|+.++++|+|++...+. ..|||||+|+|..|..++.++.
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk   79 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQK   79 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHH
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHh
Confidence            478899999999999999999999876555 7999999999999988876543

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.13  E-value=3.5e-11  Score=116.38  Aligned_cols=72  Identities=36%  Similarity=0.622  Sum_probs=64.8

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      ..|||||||++.+++..|||++||+|..++|||+.+.      .+-++.+++|++||+.|+|...|+.|-.||.-...
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            4599999999999999999999999999999999754      35678999999999999999999999999875543

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.01  E-value=5.7e-10  Score=98.00  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=56.1

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      .|||++|||++.  .+..++++.|++|.+++|||+.....      +.+....||+||.+|+||.+|+.|=-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            589999999995  89999999999999999999975432      34567899999999999999999864

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.95  E-value=1.2e-09  Score=94.78  Aligned_cols=54  Identities=30%  Similarity=0.441  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccchhhhhhhccc
Q 017647           88 SASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQY  141 (368)
Q Consensus        88 ~a~~~eIk~ayr~l~~~~hPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~~  141 (368)
                      +.+..+|+++||+|++++|||+....      .+.+.|..||+||++|+||.+|+.|+--
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            35789999999999999999986432      2567899999999999999999999963

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.1e-09  Score=99.75  Aligned_cols=71  Identities=39%  Similarity=0.459  Sum_probs=63.3

Q ss_pred             cccccccccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647           71 SVVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQY  141 (368)
Q Consensus        71 ~~~~~~~d~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~  141 (368)
                      ..-|...|+|.+|||+.   -|++.+|.+|.++.+.+||||+...   .+..+.|+.|+.||+||+|+.+|..||..
T Consensus        37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            35577789999999987   7899999999999999999999742   46789999999999999999999999974

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=2.4e-09  Score=102.14  Aligned_cols=85  Identities=19%  Similarity=0.297  Sum_probs=72.1

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      ++|.||.+++.|+|.||+.|.++.+..-                                                    
T Consensus       198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl----------------------------------------------------  225 (291)
T PRK14299        198 LEGDDLYATVDVPAPIAVVGGKVRVMTL----------------------------------------------------  225 (291)
T ss_pred             EECCEEEEEEecCHHHHhCCCEEEEECC----------------------------------------------------
Confidence            4688999999999999999988776521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                                           ++.++|+||+|+++|++++|+|+|++.. ++..|||||+|+|..|+.++.++.+|+..
T Consensus       226 ---------------------dG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~  282 (291)
T PRK14299        226 ---------------------DGPVEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQ  282 (291)
T ss_pred             ---------------------CCCEEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence                                 2347899999999999999999999853 45689999999999999999988876544

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.2e-09  Score=93.83  Aligned_cols=64  Identities=30%  Similarity=0.462  Sum_probs=58.1

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYD  139 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd  139 (368)
                      +.|+|+||.|.|..+.++||+.||+|++..|||+|++  +.|...|.-|..||.+|-|+..|..-+
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            5699999999999999999999999999999999985  578899999999999999998665444

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=5.5e-09  Score=99.79  Aligned_cols=105  Identities=28%  Similarity=0.529  Sum_probs=77.6

Q ss_pred             ecccccCCccccCce----------eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccc-----
Q 017647          224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE-----  288 (368)
Q Consensus       224 ~C~~C~G~G~~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~-----  288 (368)
                      .|..|.|+|......          ..+|..|+|.|..+...          ..|+.|.|.+.+...+-.+.+..     
T Consensus       145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~  214 (337)
T KOG0712|consen  145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH  214 (337)
T ss_pred             CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence            688899888653322          56799999998864432          68999999887654322222111     


Q ss_pred             --eE------------------------------------------------------E--EEeeEEEEEeCCC--CcCC
Q 017647          289 --GR------------------------------------------------------I--RLKKNIKVKVPPG--VSTG  308 (368)
Q Consensus       289 --g~------------------------------------------------------v--~~~~~l~V~Ip~G--~~~G  308 (368)
                        ..                                                      +  .+.+.+++.++||  +.+|
T Consensus       215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~  294 (337)
T KOG0712|consen  215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG  294 (337)
T ss_pred             cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence              11                                                      1  2346789999999  9999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeCC
Q 017647          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (368)
Q Consensus       309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~  339 (368)
                      ++++++|+|++..++. .|||||.+.|+.|+
T Consensus       295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            9999999999987655 99999999999988

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.66  E-value=3.6e-08  Score=94.80  Aligned_cols=83  Identities=30%  Similarity=0.452  Sum_probs=68.7

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.|+.+++.|+|.+|+.|+++.|...                                                    
T Consensus       206 r~g~DL~~~~~Isl~~al~G~~~~i~~~----------------------------------------------------  233 (306)
T PRK10266        206 IVGQDLEIVVPLAPWEAALGAKVTVPTL----------------------------------------------------  233 (306)
T ss_pred             EeCCceEEEEecCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence            4588999999999999999988776521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~  350 (368)
                                           .+.++|+||+|+++|++++|+|+|++..  +..|||||+|+|..|+.+.-+...|+.
T Consensus       234 ---------------------~g~v~v~ip~g~~~g~~~ri~g~G~p~~--~~~GdL~v~~~v~~P~~l~~~q~~l~~  288 (306)
T PRK10266        234 ---------------------KESILLTIPPGSQAGQRLRVKGKGLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQ  288 (306)
T ss_pred             ---------------------CccEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence                                 2347899999999999999999999864  247999999999999988766655443

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.62  E-value=7.4e-08  Score=77.92  Aligned_cols=61  Identities=36%  Similarity=0.730  Sum_probs=49.6

Q ss_pred             ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEE
Q 017647          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL  293 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~  293 (368)
                      ..+.|..|+|+|.      .+|+.|+|+|.+....   .+++++...|+.|+|.|+.   .|..|.|.+.+..
T Consensus        40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCC------cCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            4578999999997      3899999999987543   2345667899999999985   4999999997654

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.5e-07  Score=82.80  Aligned_cols=55  Identities=33%  Similarity=0.631  Sum_probs=51.3

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hccc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSD  131 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~-~L~d  131 (368)
                      ..+|.+|||..+|+.+|++.||..||+++|||...+....++|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999999888888899999999998 7764

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.23  E-value=2.1e-06  Score=89.18  Aligned_cols=71  Identities=55%  Similarity=0.918  Sum_probs=65.9

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      .|||+||||+++|+.++||+|||+|+++||||++..+.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            58999999999999999999999999999999988777888999999999999999999999999977654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.9e-06  Score=91.17  Aligned_cols=52  Identities=37%  Similarity=0.531  Sum_probs=45.4

Q ss_pred             cccchhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 017647           77 GDYYATLGVPKS----ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (368)
Q Consensus        77 ~d~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~  130 (368)
                      .+-|+||.|+-+    -..+.||++|++||.+||||+|+  +-.++|.+||+|||.|.
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence            478999999753    24488999999999999999994  66789999999999998

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.1e-06  Score=66.23  Aligned_cols=53  Identities=26%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccch
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~  132 (368)
                      ..--.||||+++++.+.||+|+|++....|||+.-.   .-.-.+||||+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence            356679999999999999999999999999999743   34456899999999753

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.04  E-value=4.1e-06  Score=74.10  Aligned_cols=48  Identities=31%  Similarity=0.662  Sum_probs=39.3

Q ss_pred             eeCCCCCCccEEEc--eeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647          266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (368)
Q Consensus       266 ~~C~~C~G~G~~~~--~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (368)
                      .+|+.|+|+|+++.  +.|..|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            56777777777765  5788888888888888999999 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.87  E-value=9.6e-06  Score=59.86  Aligned_cols=44  Identities=32%  Similarity=0.897  Sum_probs=31.2

Q ss_pred             ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCcc
Q 017647          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (368)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++ ..          .+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence            45689999999976432         267899999999987 21          7899999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.46  E-value=8.2e-05  Score=75.08  Aligned_cols=68  Identities=31%  Similarity=0.749  Sum_probs=37.9

Q ss_pred             eecccccCCccccCceeeeCCCCCCccEEEEee--------eCCCcceee-eeeCCCCCCccEEEc-eeeeeeccceEE
Q 017647          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD--------QTPFGLFSQ-VSVCPSCGGEGEVIS-EYCRKCSGEGRI  291 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~~~-~~C~~C~g~g~v  291 (368)
                      ..|+.|+|+|.... ....|+.|+|+|..-...        +...-.+.. ..+|+.|+|+|.+.. ..|..|.|.|.+
T Consensus         3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            45777777775432 235677777777652111        000111222 357777777776643 677777777765

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00047  Score=58.49  Aligned_cols=67  Identities=24%  Similarity=0.433  Sum_probs=53.2

Q ss_pred             ccccccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           74 CASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        74 ~~~~d~y~iLgv~~--~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      ....+||.++|...  ...+..++.-|--..++.|||+...      ..+.+...+||+||.+|.||-+|+.|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34568999998654  4566667768999999999998321      2467889999999999999999999863

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.78  E-value=0.0013  Score=53.47  Aligned_cols=41  Identities=29%  Similarity=0.808  Sum_probs=32.3

Q ss_pred             ecccccCCccccCc------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647          224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (368)
Q Consensus       224 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (368)
                      .|+.|+|+|.....      ...+|+.|+|+|+.               .|+.|.|.|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence            89999999975321      25689999999962               4999999998654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0014  Score=57.95  Aligned_cols=53  Identities=42%  Similarity=0.552  Sum_probs=45.9

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL  129 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~f~~i~~Ay~~L  129 (368)
                      .+.|.+|++...++..+|+++|+++....|||+...        ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999998532        23678889999999754

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.46  E-value=0.0025  Score=56.50  Aligned_cols=31  Identities=29%  Similarity=0.758  Sum_probs=19.4

Q ss_pred             eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEce
Q 017647          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE  280 (368)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  280 (368)
                      .+|+.|+|+|.+++..          .+|+.|+|+|++...
T Consensus       100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~~  130 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRPT  130 (186)
T ss_pred             CcCCCCCCeeEEecCC----------CCCCCCCCccEEeee
Confidence            4566666666665421          467777777776554

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.45  E-value=0.003  Score=64.17  Aligned_cols=45  Identities=33%  Similarity=0.920  Sum_probs=36.4

Q ss_pred             eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc---------------------eeeeeeccceEEEE
Q 017647          239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRL  293 (368)
Q Consensus       239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------------------~~C~~C~g~g~v~~  293 (368)
                      +.+|+.|+|+|++....          ..|+.|+|+|+...                     -.|..|+|.|.++.
T Consensus         2 ~~~C~~C~g~G~i~v~~----------e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v   67 (715)
T COG1107           2 IKKCPECGGKGKIVVGE----------EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV   67 (715)
T ss_pred             CccccccCCCceEeeee----------eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE
Confidence            46899999999986533          78999999998632                     18999999998854

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0039  Score=58.83  Aligned_cols=31  Identities=35%  Similarity=0.761  Sum_probs=19.9

Q ss_pred             eCCCCCCccEEEceeeeeeccceEEEEeeEEEEE
Q 017647          267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK  300 (368)
Q Consensus       267 ~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~  300 (368)
                      .|+.|.|+|.   .+|.+|+|.|-+.....+.|.
T Consensus       247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~  277 (406)
T KOG2813|consen  247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY  277 (406)
T ss_pred             cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence            4555555543   578889888877665555554

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.91  E-value=0.0083  Score=60.68  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             chhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 017647           80 YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP  113 (368)
Q Consensus        80 y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~  113 (368)
                      |+-+.|..-.+.++|||||||..+..||||.+..
T Consensus       391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             cccCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence            3444556677999999999999999999998765

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.0096  Score=52.53  Aligned_cols=63  Identities=33%  Similarity=0.536  Sum_probs=48.8

Q ss_pred             ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        78 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      |++..+|+.+.+  ..+.++..|+.+++.+|||+.....      +-+.+..++.||.+|.||.+|+.|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            455556665544  4466889999999999999975432      33568899999999999999999864

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.012  Score=55.73  Aligned_cols=58  Identities=26%  Similarity=0.630  Sum_probs=34.1

Q ss_pred             eeecccccCCccccC--ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          222 LETCEVCTGTGAKMG--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      ...|+.|+|.|...-  ..+..|..|-|-   ..      --.-+...|..|+|+|+   ..|.+|.|.|.+
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~---~~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k  257 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV---PP------PKIGTHDLCYMCHGRGI---KECHTCKGRGKK  257 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCC---CC------CCCCccchhhhccCCCc---ccCCcccCCCCc
Confidence            467888888885321  125567777661   00      01122356777777775   467777777766

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.26  E-value=0.092  Score=43.77  Aligned_cols=56  Identities=23%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhh
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR  135 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r  135 (368)
                      ..-.+||||++..+.+||.+.|.+|-...+|++.   ++.-.=.+|..|.|.|..+.+.
T Consensus        58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~  113 (127)
T PF03656_consen   58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE  113 (127)
T ss_dssp             HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999976   5666667888999988766543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.082  Score=50.45  Aligned_cols=98  Identities=23%  Similarity=0.393  Sum_probs=64.0

Q ss_pred             ccccceeeEeecceeecccccCCccc-----cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee
Q 017647          209 SIFGAEKEFELSHLETCEVCTGTGAK-----MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR  283 (368)
Q Consensus       209 ~~~G~~~~~~~~~~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~  283 (368)
                      ...|.. .........|..|.|+|..     ......+|..|+|.|.++.            ..|..|.|.|.+...+-.
T Consensus       169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~~k~i  235 (288)
T KOG0715|consen  169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRRAKDI  235 (288)
T ss_pred             cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhhheeE
Confidence            333433 3334567899999999932     1122337999999999876            459999999977666666


Q ss_pred             eeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCC
Q 017647          284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP  321 (368)
Q Consensus       284 ~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~  321 (368)
                      ....++.+...-+|++..+...  .-.+++.-..++..
T Consensus       236 ~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~~  271 (288)
T KOG0715|consen  236 MIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPSF  271 (288)
T ss_pred             EeecCcccccccEEEEecCCcc--eEEEEEEeccCccc
Confidence            6666666666666666655443  44455555555443

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=87.16  E-value=1.2  Score=39.89  Aligned_cols=41  Identities=34%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchh
Q 017647           86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDK  133 (368)
Q Consensus        86 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~  133 (368)
                      +++|+.|||.+|+.++..+|--|       ++.-.+|..||+.+.-..
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Confidence            57999999999999999998443       455677999999765443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=85.60  E-value=2.6  Score=31.40  Aligned_cols=46  Identities=13%  Similarity=0.198  Sum_probs=33.9

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFK  120 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~  120 (368)
                      |++|.-+++|+++.|+..||+.|-++.+++..=-..+.....+.|.
T Consensus         1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe   46 (88)
T COG5552           1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFE   46 (88)
T ss_pred             CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Confidence            4567778899999999999999998888886444443333445554

>PF13446 RPT: A repeated domain in UCH-protein

Probab=85.52  E-value=1.5  Score=31.52  Aligned_cols=26  Identities=19%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             ccchhcCCCCCCCHHHHHHHHHHHHH
Q 017647           78 DYYATLGVPKSASGKEIKAAYRKLAR  103 (368)
Q Consensus        78 d~y~iLgv~~~a~~~eIk~ayr~l~~  103 (368)
                      +-|+.|||+++.+.+.|-.+|+....
T Consensus         6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    6 EAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999998876

>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function

Probab=81.00  E-value=6.6  Score=29.45  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=34.2

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFK  120 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~  120 (368)
                      |++|--.+.|+.|.|+.+||..|-.+.++|..=-..+.....+.|.
T Consensus         1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~   46 (78)
T PF10041_consen    1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFD   46 (78)
T ss_pred             CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHH
Confidence            4556667778999999999999999999987655554444455554

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=80.99  E-value=6.5  Score=34.18  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=16.8

Q ss_pred             eEEEEEeCCCCcCCCEEEEcc
Q 017647          295 KNIKVKVPPGVSTGSILRVVG  315 (368)
Q Consensus       295 ~~l~V~Ip~G~~~G~~i~l~g  315 (368)
                      -.+.+.||||...|..-.++|
T Consensus        80 PEl~~ei~pg~~~g~itTVEG  100 (160)
T smart00709       80 PELDLEIPPGPLGGFITTVEG  100 (160)
T ss_pred             eeeeEEecCCCCCcEEEehHH
Confidence            357788899998888888866

Also present in archaeal proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-20
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-18
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		6e-18
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-17
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-16
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-16
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		6e-16
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		7e-16
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		9e-16
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-15
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-15
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-15
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		7e-15
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-14
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-14
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		7e-14
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-13
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-13
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		2e-12
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		7e-10
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		1e-08
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-07
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		4e-07
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		5e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		5e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		5e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		1e-04
2ys8_A	90	Solution Structure Of The Dnaj-Like Domain From Hum		6e-04

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 138 YDQYGEAGVKST 149
           +D+YGE G+K +
Sbjct: 64  FDRYGEEGLKGS 75

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           +SGDYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ 
Sbjct: 5   SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 134 KRAMYDQYG 142
           KR  YD YG
Sbjct: 65  KRKQYDAYG 73

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 116/268 (43%), Gaps = 52/268 (19%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 138 YDQY----GEAGVKSTVGGGSSAYTTNPF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
           YDQ      + G          +Y+   F D+F +                   RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQA-----------HQRRRQHA 137
Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSH---------------LETCEVCTGTGAKMGS 237
            +G DL  ++ +   E++  AE+   +S+                +T  V    G   G 
Sbjct: 138 ARGHDLEIEVAVFLEETL--AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQ 195
Query: 238 KMRI--CSTCGGRGQVMRTDQTPFG-LFSQVSVCPS-----CGGEGEVISEYCRKCSGEG 289
           ++R+    T G  G        P G L+  + + P       G   E++       +  G
Sbjct: 196 RIRLKGQGTPGENG-------GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALG 248
Query: 290 R----IRLKKNIKVKVPPGVSTGSILRV 313
                  LK++I + VPPG   G  LR+
Sbjct: 249 AKVTVPTLKESILLTVPPGSQAGQRLRI 276

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 138 YDQ 140
           YDQ
Sbjct: 66  YDQ 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64
Query: 135 RAMYDQYG 142
           R  YDQ+G
Sbjct: 65  RKQYDQFG 72

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +IS AYE+LS+++KR  
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 138 YDQYG 142
           YD YG
Sbjct: 78  YDHYG 82

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 139 DQYGEAGVKSTVGGGSS 155
           D  G +    T G G S
Sbjct: 69  DTLGHSAF--TSGKGQS 83

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRA 136
           YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 137 MYDQYGEAGVKSTVGGGSSA 156
           +YD+YG  G+  T  G S A
Sbjct: 64  IYDRYGREGLTGTGTGPSRA 83

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV   AS  E+K AYRK+A ++HPD  K P   E+FK+IS AYEVLSD+KKR +Y
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 139 DQYGE 143
           DQ GE
Sbjct: 68  DQGGE 72

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV  +A+ +E+K AYRKLA +YHPD  K P   EKFK+IS AYEVLSD KKR +Y
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 139 DQYGE 143
           D+ GE
Sbjct: 66  DKGGE 70

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 136 AMYDQYG 142
            +YD+YG
Sbjct: 70  DIYDRYG 76

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 63  KYDKYGEKGLEDNQGGQYESWSYYRYDF 90

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 82  KYDKYGEKGLEDNQGGQYESWSYYRYDF 109

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD 139
           Y  LGV  SA+ +E+K  YRK A +YHPD  K  G TEKFKEIS A+E+L+D +KR +YD
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 140 QYGEAGVKS 148
           QYG    +S
Sbjct: 69  QYGLEAARS 77

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 129 LSDDKKRAMYDQYGEAGV 146
           L+D  KR +YD+YG  G+
Sbjct: 70  LTDATKRNIYDKYGSLGL 87

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN--KEPGATEKFKEISAAY 126
           G S      +YY  LGV  SAS ++IK AYRKLA ++HPD N   +  A +KFK +S AY
Sbjct: 1   GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 127 EVLSDDKKRAMYDQYG 142
           EVLSD KKR++YD+ G
Sbjct: 61  EVLSDSKKRSLYDRAG 76

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274
           KE  +  LE C+VC G+GAK G++ + C TC G GQV    Q   G F+    CP C G 
Sbjct: 4   KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV----QMRQGFFAVQQTCPHCQGR 59
Query: 275 GEVISEYCRKCSGEGRI 291
           G +I + C KC G GR+
Sbjct: 60  GTLIKDPCNKCHGHGRV 76

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 204 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS 263
           L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G  M T  T  G F 
Sbjct: 10  LTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFV 65
Query: 264 QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295
             S C  CGG G +I   C  C G G+ + KK
Sbjct: 66  MRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
            +R     +G+D++++I     E   G   +  L+    C+ C G G K G+ ++ C++C
Sbjct: 2   AQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSC 60
Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPP 303
            G+G    T Q    +    + C  C G G++I   + C+ C+G+     +K ++V V P
Sbjct: 61  NGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP 120
Query: 304 GVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIP--GIQRDGIDLFSTISISYLDAIM 361
           G+  G   R+V                V++ V E P    +RDG DL     I  L AI 
Sbjct: 121 GMKDGQ--RIVFKGEADQAPDVIPGDVVFI-VSERPHKSFKRDGDDLVYEAEIDLLTAIA 177
Query: 362 G 362
           G
Sbjct: 178 G 178

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 XRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 MRKKFD 448

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKE-IKAAYRKLARQYHPD--VNKEPG--ATE 117
           S+   F   + C   + Y  L V +    K+ +  AYR LAR++HPD   NKE    A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60
Query: 118 KFKEISAAYEVLSDDKKRAMYDQY 141
           +F+ I+ AYE L DD+ +  YD Y
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYY 84

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 137 MYDQY 141
            YD +
Sbjct: 81  RYDHW 85

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRAMY 138
           Y  LGVP +A+  +IKAAY +    YHPD N     A E+F  IS AY VL     R  Y
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 139 DQ 140
           D+
Sbjct: 80  DR 81

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 71  NEETKREYD 79

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 77  NEETKKKYD 85

>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVL 129
           S D +  LGV   AS  E+  AYRKLA   HPD    PG+ + FK +  A   L
Sbjct: 26  SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-77
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	6e-64
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-45
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-45
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-43
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-41
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-41
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	6e-41
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-39
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-39
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-39
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-39
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	4e-39
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-39
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	1e-38
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-38
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	3e-38
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-37
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	4e-37
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	4e-36
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-36
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-36
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	3e-33
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-32
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-32
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-31
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	6e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-23
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-21
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	9e-21
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	1e-20
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-20
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	4e-20
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-17
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	7e-17
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-15
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	6e-15
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-12
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-10
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	5e-09
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	2e-08

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  240 bits (615), Expect = 2e-77
 Identities = 74/295 (25%), Positives = 114/295 (38%), Gaps = 75/295 (25%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           YDQ  +       G     +  +       D+F + FG                RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFG-----------QQAHQRRRQHA 137

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
            +G DL  ++ +   E++    +    +                          G  +  
Sbjct: 138 ARGHDLEIEVAVFLEETLAEQTRTISYN-------------------LPVYNVFGMIESE 178

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                                                     K + VK+P GV  G  +R
Sbjct: 179 TP----------------------------------------KTLNVKIPAGVVDGQRIR 198

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           + G+G  G  GGP GDL++ + +   P     G +L   + ++  +A +G  V V
Sbjct: 199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTV 253

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  203 bits (518), Expect = 6e-64
 Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 4/184 (2%)

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +R     +G+D++++I     E   G   +  L+    C+ C G G K G+  + C++C 
Sbjct: 3   QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCN 61

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY--CRKCSGEGRIRLKKNIKVKVPPG 304
           G+G    T Q    +    + C  C G G++I     C+ C+G+     +K ++V V PG
Sbjct: 62  GQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG 121

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           +  G  +   GE D  P    PGD+   +        +RDG DL     I  L AI G  
Sbjct: 122 MKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180

Query: 365 VKVT 368
             + 
Sbjct: 181 FALE 184

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  150 bits (380), Expect = 1e-45
 Identities = 39/85 (45%), Positives = 56/85 (65%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEI 122
           S +    +S+     D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +I
Sbjct: 3   SGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62

Query: 123 SAAYEVLSDDKKRAMYDQYGEAGVK 147
           S AYE+LS+++KR  YD YG     
Sbjct: 63  SKAYEILSNEEKRTNYDHYGSGPSS 87

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  148 bits (377), Expect = 3e-45
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  145 bits (367), Expect = 1e-43
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64

Query: 135 RAMYDQYGEAGVK 147
           R  YDQ+G     
Sbjct: 65  RKQYDQFGSGPSS 77

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  139 bits (353), Expect = 2e-41
 Identities = 40/76 (52%), Positives = 48/76 (63%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 138 YDQYGEAGVKSTVGGG 153
           YD  G +   S  G  
Sbjct: 68  YDTLGHSAFTSGKGQS 83

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  139 bits (351), Expect = 4e-41
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
            YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGP 171
            +YD+YG  G+  T  G S A   +     E     
Sbjct: 63  EIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  138 bits (350), Expect = 6e-41
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69

Query: 129 LSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPG 178
           L+D  KR +YD+YG  G+      G         +   T+F    G   G
Sbjct: 70  LTDATKRNIYDKYGSLGLYVAEQFG--------EENVNTYF--VSGPSSG 109

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  135 bits (342), Expect = 1e-39
 Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +KRA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGG 175
            YDQYG A  +    GG        F D+F   FG   GG
Sbjct: 64  AYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  138 bits (350), Expect = 1e-39
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YD+YGE G++   GG         ++ +  +                  R         
Sbjct: 63  KYDKYGEKGLEDNQGGQ--------YESWSYYRYDFGIYDDDPEIITLERRE-------- 106

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVC 228
                    F  ++   E  F   +   C  C
Sbjct: 107 ---------FDAAVNSGELWFVNFYSPGCSHC 129

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  133 bits (337), Expect = 4e-39
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             Y  LGV  SA+ +E+K  YRK A +YHPD     G TEKFKEIS A+E+L+D +KR +
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66

Query: 138 YDQYGEAGVKSTVGGGSSA 156
           YDQYG    +S        
Sbjct: 67  YDQYGLEAARSGGPSFGPG 85

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  133 bits (336), Expect = 4e-39
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 137 MYDQYGEAGV 146
            YD YG    
Sbjct: 68  QYDAYGSGPS 77

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  133 bits (337), Expect = 4e-39
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +YY  LGV  SAS ++IK AYRKLA ++HPD N +    A +KFK +S AYEVLSD KKR
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 136 AMYDQYGEAGVKSTVGGGSSA 156
           ++YD+ G    ++  G    +
Sbjct: 70  SLYDRAGCDSWRAGGGASGPS 90

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  132 bits (334), Expect = 9e-39
 Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 136 AMYDQYGEAGVK 147
            +YD+YG     
Sbjct: 70  DIYDRYGSGPSS 81

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score =  132 bits (335), Expect = 1e-38
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G      + L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G     
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME-TI 59

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300
           +    G F   S C  CGG G +I   C  C G G+ + KK     
Sbjct: 60  NT---GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  130 bits (330), Expect = 2e-38
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGV   AS  E+K AYRK+A ++HPD N  P   E+FK+IS AYEVLSD+KKR +
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66

Query: 138 YDQYGE 143
           YDQ GE
Sbjct: 67  YDQGGE 72

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  132 bits (333), Expect = 3e-38
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
            YD +  + +        +       D  +T  GPS G
Sbjct: 81  RYDHWRRSQMSMPFQQWEAL-----NDSVKT-SGPSSG 112

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  129 bits (326), Expect = 3e-37
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEP----GATE 117
           S+   F   + C   + Y  L V +     +++  AYR LAR++HPD  K       A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60

Query: 118 KFKEISAAYEVLSDDKKRAMYDQYGEAG 145
           +F+ I+ AYE L DD+ +  YD Y +  
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYYLDHP 88

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  128 bits (324), Expect = 4e-37
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 62  RSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFK 120
             S+   G     +    Y  LGVP +A+  +IKAAY +    YHPD N     A E+F 
Sbjct: 3   SGSSGSQGDCSY-SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFT 61

Query: 121 EISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154
            IS AY VL     R  YD+   +       G  
Sbjct: 62  RISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSG 95

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  125 bits (316), Expect = 4e-36
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 53  GSKLNSSNARSSTYRFGRSV--VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN 110
           GS  +S ++ S T     ++  +  S D +  LGV   AS  E+  AYRKLA   HPD  
Sbjct: 1   GSSGSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKC 60

Query: 111 KEPGATEKFKEISAAYEVLSDDKKRAMYD 139
             PG+ + FK +  A   L  + K     
Sbjct: 61  VAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  125 bits (316), Expect = 5e-36
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYGEAG 145
           +++ +  YD      
Sbjct: 77  NEETKKKYDLQRSGP 91

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  127 bits (320), Expect = 6e-36
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL---FETFFGPSMGGF 176
           +++ +  YD          VG   +              +F+     G 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  119 bits (299), Expect = 3e-33
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLF 165
           A    +G     + +    +      ++ F
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAF 95

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  119 bits (300), Expect = 1e-32
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 68

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
           A    +G                 +  ++F +   P + 
Sbjct: 69  AHQPDFGGFW--------------DATEVFASSLNPGVD 93

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  115 bits (291), Expect = 2e-32
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L    K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  123 bits (309), Expect = 6e-31
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYE 127
           G        ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYE
Sbjct: 13  GHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

Query: 128 VLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           VL D+  R  YD+YGE G++   GG   +++   +D       P +              
Sbjct: 73  VLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS 132

Query: 188 RRSTVTK----GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMG 236
                      G    +D+   + E     +    +  +  C          G
Sbjct: 133 GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN-CGDDRMLCRMKG 184

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score =  101 bits (253), Expect = 6e-27
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV +  Q   G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV-QMRQ---GFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 99.0 bits (247), Expect = 4e-23
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD  +       A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 134 KRAMYDQ 140
            R  +D 
Sbjct: 443 MRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 88.1 bits (218), Expect = 6e-21
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 78  DYYATLGVPKSASG-------KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130
            +Y                    ++  YR+L  Q+HPD+      +E+   ++ AY  L 
Sbjct: 12  TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTLNQAYHTLK 69

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFD-LFETF 168
           D  +R+ Y       +  T    S+  TT+    L +  
Sbjct: 70  DPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVL 108

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 87.3 bits (216), Expect = 9e-21
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFE 166
                RA Y      G        +   T    +  E
Sbjct: 62  RHPLMRAEY-LLSLHGFDLASEQHTVRDTAFLMEQLE 97

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 25/98 (25%), Positives = 42/98 (42%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ + I    ++         +  ++V++ PG   G+ L   GEGD    G  PGDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 331 VYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
           + +  +  P   RD   L   ++I  + A+ G    VT
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVT 115

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score = 85.3 bits (212), Expect = 4e-20
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQR 343
              G      K  I +++ PG   G+ +    +GD  P+ G    L   +  +  P  +R
Sbjct: 25  GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84

Query: 344 DGIDLFSTISISYLDAIMGTVVKVT 368
           DG DL  T+ +S+ ++++G    + 
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQ 109

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 75.8 bits (186), Expect = 1e-17
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score = 76.9 bits (190), Expect = 7e-17
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPP 326
           +   C  + + IS       G+      K + ++V  G   G+ +    EGD       P
Sbjct: 16  IYSGCTKKMK-ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIP 73

Query: 327 GDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368
            D+   L  +     +RDG D+     IS  +A+ G  V V 
Sbjct: 74  ADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVP 115

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 72.1 bits (176), Expect = 6e-15
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY++ +   +S      +++  Y++L R  HPD   +   TEK         ++ AY+ L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 130 SDDKKRAMYD 139
                R +Y 
Sbjct: 104 LAPLSRGLYL 113

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 71.4 bits (174), Expect = 6e-15
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDK 133
             +  +G+    + +++K  YRK     HPD       E  A   F E++ A+    +  
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 134 KRAMY 138
           ++ +Y
Sbjct: 178 QKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 78  DYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           +    L + ++  + K++K  +RK+    HPD     G+     +I+ A + L      
Sbjct: 15  EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEIS-AAYEVLSDDKK 134
           SG  +  + +     G  ++ +Y++     HPD  ++ GA+   K ++   +E+L +   
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE--- 95

Query: 135 RAMYDQYGEAG 145
            A +D +   G
Sbjct: 96  -A-WDHFNTLG 104

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSD 131
           +  +G+    + +++K  YRK     HP           A   F E++ A+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 297 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVE 336
           I + VPPG   G  LR+ G+G         GDL+  + + 
Sbjct: 40  ILLTVPPGSQAGQRLRIKGKG--LVSKTHTGDLFAVIKIV 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	99.94
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	99.92
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	99.9
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.88
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.86
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.84
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.84
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.83
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.82
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.81
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.77
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.73
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.72
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.72
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.71
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.7
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.68
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.67
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.66
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.65
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.65
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.63
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.62
2guz_A	71	Mitochondrial import inner membrane translocase su	99.61
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.58
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.54
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.48
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.29
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.24
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	99.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.99
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.94
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.94
2guz_B	65	Mitochondrial import inner membrane translocase su	98.86
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.82
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.77
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.73
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.63
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.3
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.28
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.1
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.17

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=1.1e-48  Score=375.50  Aligned_cols=223  Identities=33%  Similarity=0.572  Sum_probs=100.0

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC--
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG--  153 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~--  153 (368)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+.+....+.+++  
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~  106 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQ  106 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccc
Confidence            479999999999999999999999999999999998888999999999999999999999999999544221111100  


Q ss_pred             --CCCC-cCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647          154 --SSAY-TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (368)
Q Consensus       154 --~~~~-~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G  230 (368)
                        .+.| ..++.|+|++|||+.  +.        +. ......++.|++++|.|+|+|+|.|+++++.+.+.+.|     
T Consensus       107 ~~~~~f~~~~f~diF~~~Fg~~--g~--------~~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~-----  170 (329)
T 3lz8_A          107 THEQSYSQQDFDDIFSSMFGQQ--AH--------QR-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN-----  170 (329)
T ss_dssp             -----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC-----
T ss_pred             cccCCcCCCchhhhhHhhhcCc--CC--------CC-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec-----
Confidence              0112 123457788777631  00        00 01124578999999999999999999999998764421     


Q ss_pred             CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (368)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~  310 (368)
                                      |.|.+.                                      +...++++|+||||+++|++
T Consensus       171 ----------------g~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G~~  196 (329)
T 3lz8_A          171 ----------------VFGMIE--------------------------------------SETPKTLNVKIPAGVVDGQR  196 (329)
T ss_dssp             ----------------SCC-CC--------------------------------------EEEEEEEEEEECTTCCTTCE
T ss_pred             ----------------CCeEEE--------------------------------------EecceEEEEeCCCCCCCCCE
Confidence                            122211                                      12246899999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|+|+|++++.++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||||++|+|+
T Consensus       197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~Vp  254 (329)
T 3lz8_A          197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVP  254 (329)
T ss_dssp             EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred             EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEE
Confidence            9999999998777889999999999999999999999999999999999999999986

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=8e-42  Score=316.46  Aligned_cols=174  Identities=28%  Similarity=0.557  Sum_probs=163.2

Q ss_pred             cccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcce-eeeeeCCC
Q 017647          192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLF-SQVSVCPS  270 (368)
Q Consensus       192 ~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~  270 (368)
                      ..++.|++++|.|+|||+|+|+++++.+.+.+.|+.|+|+|+..+. ..+|+.|+|+|.++..+++++ ++ +.+.+|+.
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~   85 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV   85 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence            3578999999999999999999999999999999999999999888 499999999999988888777 44 45589999


Q ss_pred             CCCccEEE--ceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCce
Q 017647          271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL  348 (368)
Q Consensus       271 C~G~G~~~--~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL  348 (368)
                      |+|.|+++  .+.|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||
T Consensus        86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999  8999999999999999999999999999999999999999975 56899999999999999999999999


Q ss_pred             EEEeccCHhhhccCCeEEeC
Q 017647          349 FSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       349 ~~~~~Isl~eALlG~~v~V~  368 (368)
                      |++++|+|+|||||++++|+
T Consensus       165 ~~~~~Isl~eAllG~~i~v~  184 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALE  184 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEE
T ss_pred             EEEEEeCHHHHhcCCEEEEe
Confidence            99999999999999999885

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=99.94  E-value=9.6e-27  Score=205.41  Aligned_cols=114  Identities=24%  Similarity=0.328  Sum_probs=96.5

Q ss_pred             CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (368)
Q Consensus       195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (368)
                      ++|++++|.|||||+|+|+++++.+.+                   .|+.|+|.|                         
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~-------------------~c~~c~G~g-------------------------   37 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH-------------------KRLNPDGKS-------------------------   37 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE-------------------EEECTTSSC-------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec-------------------ccCCCCCce-------------------------
Confidence            468899999999999999999987642                   233333333                         


Q ss_pred             cEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEecc
Q 017647          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (368)
Q Consensus       275 G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I  354 (368)
                                     .+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus        38 ---------------~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (181)
T 3agx_A           38 ---------------IRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI  101 (181)
T ss_dssp             ---------------EEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             ---------------EEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence                           33557899999999999999999999999977 67899999999999999999999999999999


Q ss_pred             CHhhhccCCeEEeC
Q 017647          355 SYLDAIMGTVVKVT  368 (368)
Q Consensus       355 sl~eALlG~~v~V~  368 (368)
                      +|+|||||++++|+
T Consensus       102 sl~eAllG~~i~v~  115 (181)
T 3agx_A          102 SLREALCGCTVNVP  115 (181)
T ss_dssp             EHHHHHHCEEEEEE
T ss_pred             CHHHHhCCCEEEeE
Confidence            99999999999885

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=2.1e-25  Score=196.66  Aligned_cols=114  Identities=24%  Similarity=0.407  Sum_probs=102.0

Q ss_pred             cCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCC
Q 017647          194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGG  273 (368)
Q Consensus       194 ~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G  273 (368)
                      ++.|++++|.|||||+|+|+++++.+.+.+.|..                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            3679999999999999999999999988777631                                              


Q ss_pred             ccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEec
Q 017647          274 EGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS  353 (368)
Q Consensus       274 ~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~  353 (368)
                                     +.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++
T Consensus        36 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~  100 (180)
T 2q2g_A           36 ---------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVT  100 (180)
T ss_dssp             ---------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred             ---------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEE
Confidence                           22345688999999999999999999999995558889999999999999999999999999999


Q ss_pred             cCHhhhccCCeEEeC
Q 017647          354 ISYLDAIMGTVVKVT  368 (368)
Q Consensus       354 Isl~eALlG~~v~V~  368 (368)
                      |+|+|||||++++|+
T Consensus       101 Isl~eAllG~~i~v~  115 (180)
T 2q2g_A          101 IPLVRALTGFTCPVT  115 (180)
T ss_dssp             EEHHHHHHCEEEEEE
T ss_pred             cCHHHHhCCCEEEee
Confidence            999999999999885

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=99.90  E-value=8.5e-24  Score=184.77  Aligned_cols=109  Identities=22%  Similarity=0.465  Sum_probs=96.9

Q ss_pred             cceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCcc
Q 017647          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (368)
Q Consensus       196 ~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (368)
                      +|++++|.|||+|+|+|+++++.+.+..      +                 .|                          
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~------~-----------------~G--------------------------   31 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------P-----------------HG--------------------------   31 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE------T-----------------TT--------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec------C-----------------CC--------------------------
Confidence            3789999999999999999999986530      0                 11                          


Q ss_pred             EEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccC
Q 017647          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS  355 (368)
Q Consensus       276 ~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Is  355 (368)
                                    .+ +.++++|+||+|+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus        32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is   96 (170)
T 1c3g_A           32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS   96 (170)
T ss_dssp             --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred             --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence                          12 367899999999999999999999997777888999999999999999999999999999999


Q ss_pred             HhhhccCCeEEeC
Q 017647          356 YLDAIMGTVVKVT  368 (368)
Q Consensus       356 l~eALlG~~v~V~  368 (368)
                      |+|||||++++|+
T Consensus        97 l~eAllG~~~~v~  109 (170)
T 1c3g_A           97 FKESLLGFSKTIQ  109 (170)
T ss_dssp             HHHHHHCEEEEEE
T ss_pred             HHHHhCCCeEEee
Confidence            9999999999885

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=2.9e-24  Score=172.52  Aligned_cols=97  Identities=48%  Similarity=0.796  Sum_probs=70.2

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG  153 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~  153 (368)
                      |..|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|+++++.+..++
T Consensus         1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~   80 (103)
T 1bq0_A            1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG   80 (103)
T ss_dssp             CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence            45799999999999999999999999999999999874 67889999999999999999999999999999887542211


Q ss_pred             CCCCc--CCCccccccccCCC
Q 017647          154 SSAYT--TNPFDLFETFFGPS  172 (368)
Q Consensus       154 ~~~~~--~~~~d~F~~fFg~~  172 (368)
                       +.+.  .++.++|+.+|+..
T Consensus        81 -~~~~~~~~~~~~f~~~f~~~  100 (103)
T 1bq0_A           81 -GGFGGGADFSDIFGDVFGDI  100 (103)
T ss_dssp             ---------------------
T ss_pred             -CCCCCCCCHHHHHHHHHHhh
Confidence             1111  13456677777643

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.88  E-value=5.1e-23  Score=156.41  Aligned_cols=74  Identities=61%  Similarity=1.030  Sum_probs=69.8

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      |..|||+||||+++|+.+|||+|||+|++++|||++..+.+.+.|++|++||++|+||.+|+.||++|.++++.
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            46799999999999999999999999999999999988889999999999999999999999999999887653

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=4.6e-22  Score=155.05  Aligned_cols=75  Identities=51%  Similarity=0.862  Sum_probs=69.7

Q ss_pred             cccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647           71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (368)
Q Consensus        71 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g  145 (368)
                      .......|||+||||+++|+.+|||+|||+|++++|||++..+.+.++|++|++||++|+||.+|+.||++|+++
T Consensus        11 ~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             hhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            355567899999999999999999999999999999999988889999999999999999999999999998754

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=5.4e-22  Score=154.65  Aligned_cols=74  Identities=55%  Similarity=0.907  Sum_probs=69.3

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      ...|||+||||+++|+.+|||+|||+|++++|||++..+.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            35689999999999999999999999999999999988888999999999999999999999999999877654

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=8.9e-22  Score=149.91  Aligned_cols=70  Identities=56%  Similarity=0.962  Sum_probs=66.7

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g  145 (368)
                      ..|||+||||+++|+.+|||+|||+|++++|||++..+++.++|++|++||++|+||.+|+.||++|+++
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4699999999999999999999999999999999988889999999999999999999999999998765

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=148.71  Aligned_cols=71  Identities=61%  Similarity=1.022  Sum_probs=66.2

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g  145 (368)
                      ...|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|.++
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            35699999999999999999999999999999999874 678999999999999999999999999998754

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.84  E-value=1.7e-21  Score=146.48  Aligned_cols=71  Identities=54%  Similarity=0.862  Sum_probs=62.4

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~  144 (368)
                      .|....|||+||||+++|+.+|||+|||+|++++|||+++.  +.++|++|++||++|+||.+|+.||++|++
T Consensus         3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            34567899999999999999999999999999999999853  468999999999999999999999999864

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=149.80  Aligned_cols=71  Identities=54%  Similarity=0.870  Sum_probs=65.8

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~  146 (368)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++..  .+.++|++|++||++|+||.+|+.||++|++++
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            46999999999999999999999999999999998753  678899999999999999999999999997664

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.9e-21  Score=151.77  Aligned_cols=74  Identities=51%  Similarity=0.783  Sum_probs=68.0

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~  149 (368)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  +.+.++|++|++||++|+||.+|+.||++|.+++..+
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   83 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG   83 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence            4689999999999999999999999999999999875  3678999999999999999999999999998877653

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.8e-21  Score=152.85  Aligned_cols=75  Identities=49%  Similarity=0.798  Sum_probs=68.0

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      .+.+..|||+||||+++|+.+|||+|||+|++++|||+++  ...++|++|++||++|+||.+|+.||++|+++++.
T Consensus         3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            4556789999999999999999999999999999999985  34679999999999999999999999999887764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4e-21  Score=156.40  Aligned_cols=74  Identities=31%  Similarity=0.562  Sum_probs=68.7

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      ....|||+||||+++|+.+|||+|||+|++++|||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            44689999999999999999999999999999999997 478899999999999999999999999999987654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=9.1e-22  Score=158.13  Aligned_cols=103  Identities=34%  Similarity=0.697  Sum_probs=93.5

Q ss_pred             CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (368)
Q Consensus       195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (368)
                      |.|++++|.|+|||||+|.++++.+.+.+.|+.|+|+|...+....+|+.|+|+|++...+    |+|+++.+|+.|+|.
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence            3577889999999999999999999999999999999999988889999999999876543    667888999999999


Q ss_pred             cEEEceeeeeeccceEEEEeeEEEEEe
Q 017647          275 GEVISEYCRKCSGEGRIRLKKNIKVKV  301 (368)
Q Consensus       275 G~~~~~~C~~C~g~g~v~~~~~l~V~I  301 (368)
                      |.+++++|..|+|.|.+.+.+.|+|+|
T Consensus        77 G~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence            999999999999999998888777764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=5.8e-21  Score=154.67  Aligned_cols=76  Identities=45%  Similarity=0.801  Sum_probs=69.7

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      ......|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            44567899999999999999999999999999999999874 67889999999999999999999999999987654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.82  E-value=5.7e-21  Score=151.91  Aligned_cols=72  Identities=53%  Similarity=0.890  Sum_probs=64.2

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.  +.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            589999999999999999999999999999999875  347899999999999999999999999999887653

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=148.52  Aligned_cols=68  Identities=41%  Similarity=0.613  Sum_probs=63.7

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQY  141 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~  141 (368)
                      ....|||+||||+++|+.+|||+|||+|+++||||++. .+.+.++|++|++||++|+||.+|+.||++
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   82 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG   82 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            45679999999999999999999999999999999986 467899999999999999999999999984

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=2.3e-20  Score=147.18  Aligned_cols=69  Identities=32%  Similarity=0.570  Sum_probs=63.5

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.       +.+.++|++|++||++|+||.+|+.||.+.
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l   88 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            446799999999999999999999999999999999863       457899999999999999999999999875

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.77  E-value=1.1e-19  Score=147.29  Aligned_cols=73  Identities=37%  Similarity=0.619  Sum_probs=66.5

Q ss_pred             ccccccccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647           72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~  144 (368)
                      ......|||+||||+++| +.+|||+|||+|++++|||++..    +.+.++|++|++||++|+||.+|+.||+++..
T Consensus        10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            344578999999999999 99999999999999999999875    56789999999999999999999999998753

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=1.6e-19  Score=162.43  Aligned_cols=89  Identities=43%  Similarity=0.790  Sum_probs=74.9

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS  155 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~  155 (368)
                      .|||+||||+++|+.+|||+|||+|++++|||+++ .+.+.++|++|++||++|+||.+|+.||++|++++....++   
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~---   78 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG---   78 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCSC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccccc---
Confidence            58999999999999999999999999999999996 57789999999999999999999999999998887654321   


Q ss_pred             CCcCCCccccccccC
Q 017647          156 AYTTNPFDLFETFFG  170 (368)
Q Consensus       156 ~~~~~~~d~F~~fFg  170 (368)
                        ....+.+|...|+
T Consensus        79 --~~~~~~~~~~~fg   91 (210)
T 3apq_A           79 --QYESWSYYRYDFG   91 (210)
T ss_dssp             --CCCCHHHHHHSSS
T ss_pred             --ccccccccccccc
Confidence              1234555555543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.8e-19  Score=139.77  Aligned_cols=64  Identities=38%  Similarity=0.504  Sum_probs=60.5

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhh
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM  137 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~  137 (368)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+++.++|++|++||++|+|+.+|+.
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            3468999999999999999999999999999999999888999999999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.73  E-value=1.5e-18  Score=132.09  Aligned_cols=66  Identities=15%  Similarity=0.300  Sum_probs=59.7

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCc
Q 017647           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (368)
Q Consensus        77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~  146 (368)
                      .++|+||||+++  ++.+|||+|||+|++++|||++.   +.++|++|++||++|+|+.+|.. |.||.+++
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            589999999999  99999999999999999999973   46899999999999999999998 56776553

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=147.36  Aligned_cols=69  Identities=32%  Similarity=0.549  Sum_probs=62.7

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~-------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~  143 (368)
                      ...|||+||||+++|+.+|||+|||+|++++|||++....       +.++|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3569999999999999999999999999999999987542       56899999999999999999999998653

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.72  E-value=5.6e-19  Score=143.59  Aligned_cols=65  Identities=31%  Similarity=0.510  Sum_probs=60.5

Q ss_pred             ccccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647           76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~  143 (368)
                      ..|||+||||+++|+.  +|||+|||+|++++|||+++.   .++|++|++||++|+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  999999999999999999864   5789999999999999999999999874

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=149.33  Aligned_cols=65  Identities=22%  Similarity=0.425  Sum_probs=58.9

Q ss_pred             ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      ..|||+||||+++  ++.++||+|||+|+++||||+++...      +.++|++|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            5799999999986  79999999999999999999987432      45789999999999999999999996

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.70  E-value=1.4e-18  Score=150.81  Aligned_cols=65  Identities=29%  Similarity=0.453  Sum_probs=58.1

Q ss_pred             ccccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647           76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~  143 (368)
                      ..|||+||||+++|+  .+|||+|||+||+++|||++++   +++|++|++||++|+||.+|+.||+||.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999854   4789999999999999999999999985

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.68  E-value=9.5e-18  Score=130.11  Aligned_cols=63  Identities=22%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhh
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM  137 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~  137 (368)
                      ...++|+||||+++|+.+|||+|||+|+++||||+++.  +.+.++|++|++||++|+|...|..
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            44689999999999999999999999999999999875  3478999999999999999887743

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.67  E-value=1.7e-17  Score=144.91  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=60.7

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccchhhhhhh
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~y  138 (368)
                      +.|...|||+||||+++|+.+|||+|||+|+++||||+++...    +.++|++|++||++|+|+.+|+.|
T Consensus       112 vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          112 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             GSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3344579999999999999999999999999999999987543    788999999999999999999987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.65  E-value=4.1e-17  Score=127.02  Aligned_cols=60  Identities=22%  Similarity=0.329  Sum_probs=53.2

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSD  131 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d  131 (368)
                      +++...++|++|||++.|+.+|||+|||++|++||||+++..    .++++|++|++||++|.+
T Consensus        28 ~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            445446899999999999999999999999999999998753    278899999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.65  E-value=1.4e-17  Score=177.22  Aligned_cols=78  Identities=44%  Similarity=0.749  Sum_probs=40.9

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~  149 (368)
                      ......|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||++|+||.+|+.||+||+++++..
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            4456789999999999999999999999999999999985 46788999999999999999999999999999887654

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.63  E-value=1.2e-16  Score=139.29  Aligned_cols=65  Identities=28%  Similarity=0.455  Sum_probs=59.6

Q ss_pred             ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        78 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      |||++|||++++  +.++||+|||+|+++||||+++...      +.++|+.|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  9999999999999999999987532      4578999999999999999999999863

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.62  E-value=7.1e-17  Score=129.56  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=54.1

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHhhccchh
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK  133 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~  133 (368)
                      ..+...|||+|||++. |+.+|||+|||+|+++||||+++.+        .+.++|++|++||++|+|+.
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            5566789999999996 9999999999999999999998632        35889999999999999975

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2e-16  Score=117.94  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             cccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhh
Q 017647           77 GDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR  135 (368)
Q Consensus        77 ~d~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r  135 (368)
                      .++|+||||++ +++.+|||+|||+|++++|||++   ++.++|++|++||++|+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence            58999999999 79999999999999999999996   4567999999999999998765

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.58  E-value=4.6e-16  Score=136.66  Aligned_cols=66  Identities=24%  Similarity=0.477  Sum_probs=59.4

Q ss_pred             cccccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           75 ASGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        75 ~~~d~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      ...|||+||      |+++ +|+.++||+|||+|++++|||+++.  +.++|++|++||++|+||.+|+.||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            346999999      4665 9999999999999999999999865  7788999999999999999999999843

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.54  E-value=3.3e-15  Score=137.86  Aligned_cols=118  Identities=21%  Similarity=0.449  Sum_probs=82.5

Q ss_pred             eeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE-
Q 017647          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI-  291 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v-  291 (368)
                      ...|+.|+|+|....         ....+|+.|+|.|+++..          ..+|+.|+|.|.+.+..-..++.+..+ 
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  123 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVENERKILEVHVEPGMK  123 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc----------CCCCcccCCCceEeeeEEEEEEECCCcc
Confidence            378999999996421         135689999999987621          178999999998876544333222111 


Q ss_pred             -------------------------------------------------------------EEee-EEEEEeCCC--CcC
Q 017647          292 -------------------------------------------------------------RLKK-NIKVKVPPG--VST  307 (368)
Q Consensus       292 -------------------------------------------------------------~~~~-~l~V~Ip~G--~~~  307 (368)
                                                                                   +.++ .++|+||+|  +++
T Consensus       124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~  203 (248)
T 1nlt_A          124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP  203 (248)
T ss_dssp             TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred             CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence                                                                         2334 699999999  999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCC--cccccCceE
Q 017647          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF  349 (368)
Q Consensus       308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~--f~r~g~dL~  349 (368)
                      |++++|+|+|++..++...|||||+|+|..|..  ++.++.+|+
T Consensus       204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l  247 (248)
T 1nlt_A          204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL  247 (248)
T ss_dssp             TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred             CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence            999999999999764435799999999999988  887776654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.48  E-value=3e-14  Score=108.27  Aligned_cols=78  Identities=44%  Similarity=0.981  Sum_probs=69.0

Q ss_pred             cceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       212 G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      |.+++|.+.+.+.|+.|+|+|...+....+|+.|+|+|.++..+    |+|+...+|+.|+|.|.++++.|..|+|.|.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            56778889999999999999998777778999999999987643    77877789999999999999999999999987


Q ss_pred             EE
Q 017647          292 RL  293 (368)
Q Consensus       292 ~~  293 (368)
                      .+
T Consensus        77 ~~   78 (79)
T 1exk_A           77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ee
Confidence            53

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.29  E-value=1.7e-12  Score=104.68  Aligned_cols=83  Identities=25%  Similarity=0.412  Sum_probs=70.2

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.|+.+++.|+|.||+.|+++++..-                                                    
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------   36 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------   36 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence            4688999999999999999988776521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~  350 (368)
                                           ++.++|+||+|+++|++++|+|+|++. .+ .+|||||+|+|..|..+..++.+++.
T Consensus        37 ---------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~   91 (109)
T 3i38_A           37 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQ   91 (109)
T ss_dssp             ---------------------SSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred             ---------------------CCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence                                 224789999999999999999999997 34 78999999999999988877766554

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.24  E-value=9.2e-12  Score=102.24  Aligned_cols=86  Identities=22%  Similarity=0.384  Sum_probs=67.6

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      ++|.|+.+++.|+|.||+.|.++++..-                                                    
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------   31 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence            4588999999999999999998776521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCC--CcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCC--cccccCce
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDL  348 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~--f~r~g~dL  348 (368)
                                          +.+.++|+||+|  +++|++++|+|+|++..++..+|||||+|+|..|..  ++.++.++
T Consensus        32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~   91 (121)
T 1xao_A           32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK   91 (121)
T ss_dssp             --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred             --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence                                023578999999  999999999999999765446899999999999988  87777665


Q ss_pred             EE
Q 017647          349 FS  350 (368)
Q Consensus       349 ~~  350 (368)
                      +.
T Consensus        92 l~   93 (121)
T 1xao_A           92 LE   93 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=99.00  E-value=4e-10  Score=98.81  Aligned_cols=84  Identities=15%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.|+.+++.|+|.||+.|.++++..-.                                                   
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tld---------------------------------------------------  118 (180)
T 2q2g_A           90 RDDCHLIMKVTIPLVRALTGFTCPVTTLD---------------------------------------------------  118 (180)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECTT---------------------------------------------------
T ss_pred             EcCCEEEEEEEcCHHHHhCCCEEEeeCCC---------------------------------------------------
Confidence            46899999999999999999887765210                                                   


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCce
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL  348 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL  348 (368)
                                           .+.++|+||+|+++|++++|+|+|++..++ +..|||||+|+|..|..++.++.+|
T Consensus       119 ---------------------G~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~  174 (180)
T 2q2g_A          119 ---------------------NRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKL  174 (180)
T ss_dssp             ---------------------CCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHH
T ss_pred             ---------------------CCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence                                 125789999999999999999999997543 4579999999999998887776554

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.99  E-value=4.4e-10  Score=98.65  Aligned_cols=84  Identities=21%  Similarity=0.291  Sum_probs=70.0

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.|+.+++.|+|.||+.|.++++..-.                                                   
T Consensus        90 R~G~DL~~~~~Isl~eAllG~~i~v~tld---------------------------------------------------  118 (181)
T 3agx_A           90 RDGSDVIYPARISLREALCGCTVNVPTLD---------------------------------------------------  118 (181)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECTT---------------------------------------------------
T ss_pred             eeCCcEEEEEEcCHHHHhCCCEEEeECCC---------------------------------------------------
Confidence            46899999999999999999887765210                                                   


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCC-CCCCccEEEEEEEEeCCCcccccCce
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL  348 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL  348 (368)
                                           .+.++|+||+|+++|++++|+|+|++..+ .+..|||||+|+|..|..++.++.+|
T Consensus       119 ---------------------G~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~  174 (181)
T 3agx_A          119 ---------------------GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV  174 (181)
T ss_dssp             ---------------------SCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHH
T ss_pred             ---------------------CCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence                                 13578899999999999999999999764 34579999999999999888776654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.94  E-value=4.6e-10  Score=109.16  Aligned_cols=64  Identities=50%  Similarity=0.723  Sum_probs=55.3

Q ss_pred             cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+    .+.++|++|++||++|+|+++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998754    378899999999999999999999996

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.94  E-value=4.3e-10  Score=97.73  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.|+.+++.|+|.||+.|.++++..-                                                    
T Consensus        84 R~G~DL~~~~~Isl~eAllG~~~~v~tl----------------------------------------------------  111 (170)
T 1c3g_A           84 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------  111 (170)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------------------
Confidence            4689999999999999999988776521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCce
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL  348 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL  348 (368)
                                          +...++|+||+|+++|++++|+|+|++..++ +..|||||+|+|..|..++.++.+|
T Consensus       112 --------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~  168 (170)
T 1c3g_A          112 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA  168 (170)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred             --------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHh
Confidence                                0125789999999999999999999997543 3579999999999998887766544

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.86  E-value=1.6e-09  Score=78.53  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             ccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccch
Q 017647           78 DYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (368)
Q Consensus        78 d~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~  132 (368)
                      +-|+||||+++   ++.++|+++||+|....|||+.   +..-...+|++|++.|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence            45899999999   9999999999999999999996   6778889999999999754

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.82  E-value=1.9e-09  Score=103.12  Aligned_cols=84  Identities=25%  Similarity=0.394  Sum_probs=70.5

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +.|.||.+++.|+|.||+.|.+++|..-                                                    
T Consensus       229 R~G~DL~~~~~Isl~eAllG~~v~VptL----------------------------------------------------  256 (329)
T 3lz8_A          229 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------  256 (329)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EcCCcEEEEEECCHHHHcCCCeEEEECC----------------------------------------------------
Confidence            5789999999999999999988776421                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~  351 (368)
                                           ++.++|+||+|+++|++++|+|+|++..  ...|||||+|+|..|+.+..++..|+.+
T Consensus       257 ---------------------dG~v~l~ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~  312 (329)
T 3lz8_A          257 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKARELWQQ  312 (329)
T ss_dssp             ---------------------SSCEEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred             ---------------------CCCEEEEECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence                                 2336899999999999999999999965  4689999999999999888777666543

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=1.1e-05  Score=64.01  Aligned_cols=50  Identities=30%  Similarity=0.730  Sum_probs=39.6

Q ss_pred             eeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee
Q 017647          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR  283 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~  283 (368)
                      ...|+.|+|+|....     ....+|+.|+|.|+++.            .+|+.|+|.|.+.+.+-.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l   99 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRS   99 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSS
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEE
Confidence            468999999996521     13578999999998864            689999999998765443

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.73  E-value=1.3e-05  Score=60.05  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=37.2

Q ss_pred             ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (368)
                      ....|+.|+|+|.....     ...+|+.|+|.|+++.            .+|+.|+|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~   78 (79)
T 1exk_A           27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence            35689999999975321     2468999999998753            68999999998754

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.63  E-value=3.2e-06  Score=87.16  Aligned_cols=78  Identities=19%  Similarity=0.356  Sum_probs=59.0

Q ss_pred             EEEEeeecccccccceeeEeecceeecccccCCccccCc---eeeeCCCCCCccEEEEe--------eeCCCcce-eeee
Q 017647          199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS  266 (368)
Q Consensus       199 ~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~g~~-~~~~  266 (368)
                      .+++.|+|+|+.+|.++++.+.+...|..|+|+|++.+.   .+.+|+.|+|.......        ...-.|.| +...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            367899999999999999999999999999999999887   57899999998421110        01111222 2346


Q ss_pred             eCCCCCCccE
Q 017647          267 VCPSCGGEGE  276 (368)
Q Consensus       267 ~C~~C~G~G~  276 (368)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            8999998764

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.30  E-value=2.8e-05  Score=53.65  Aligned_cols=31  Identities=26%  Similarity=0.737  Sum_probs=19.6

Q ss_pred             eeecccccCCccccCceeeeCCCCCCccEEEEee
Q 017647          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD  255 (368)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  255 (368)
                      ...|+.|+|+|....   .+|+.|+|.|.++..+
T Consensus         9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~q   39 (53)
T 2bx9_A            9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQ   39 (53)
T ss_dssp             EEECTTTTTSSEETT---EECTTTTTSSEEECHH
T ss_pred             cccCCCCcceeccCC---CCCccCCCCccEEEEe
Confidence            356777777776542   4677777777665433

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.28  E-value=6.3e-05  Score=51.86  Aligned_cols=28  Identities=43%  Similarity=0.947  Sum_probs=19.3

Q ss_pred             eeCCCCCCccEEEceeeeeeccceEEEE
Q 017647          266 SVCPSCGGEGEVISEYCRKCSGEGRIRL  293 (368)
Q Consensus       266 ~~C~~C~G~G~~~~~~C~~C~g~g~v~~  293 (368)
                      .+|+.|+|+|.++.++|..|+|.|.+..
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            5677777777777777777777776543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.10  E-value=0.00021  Score=49.20  Aligned_cols=28  Identities=32%  Similarity=0.926  Sum_probs=15.0

Q ss_pred             eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (368)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (368)
                      .+|+.|+|+|.++.            .+|+.|+|.|.+.+
T Consensus        10 ~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           10 TTCPNCNGSGREEP------------EPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSCEETT------------EECTTTTTSSEEEC
T ss_pred             ccCcCCcccccCCC------------CcCCCCCCcEEEEE
Confidence            34555555555432            45666666665543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.94  E-value=0.00036  Score=48.02  Aligned_cols=29  Identities=28%  Similarity=0.878  Sum_probs=19.5

Q ss_pred             eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647          239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (368)
Q Consensus       239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (368)
                      ..+|+.|+|.|.++.            .+|+.|+|.|.++.
T Consensus         9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEG------------TPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence            456777777776532            56777777777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.17  E-value=0.12  Score=53.39  Aligned_cols=48  Identities=23%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             ccccccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Q 017647           74 CASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV  128 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~  128 (368)
                      ....|||.+||++.+...  .+|++|||+||+..+++       .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            445689999999777665  77999999999976555       4788889988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-25
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	9e-24
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-20
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-20
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	7e-20
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	8e-20
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	6e-19
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-18
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-17
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	1e-16
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	1e-15
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	4e-14
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	1e-06
d1qo8a1	101	a.138.1.3 (A:2-102) Flavocytochrome c3 (respirator	7e-05
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	4e-04

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 95.5 bits (237), Expect = 2e-25
 Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 134 KRAMYDQYGEAGVK 147
           KRA YDQYG A  +
Sbjct: 61  KRAAYDQYGHAAFE 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 9e-24
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 82.0 bits (202), Expect = 2e-20
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYD 139
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-------KEPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYG 142
           +++ +  YD   
Sbjct: 77  NEETKKKYDLQR 88

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 7e-20
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L   +K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.1 bits (200), Expect = 8e-20
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 72  VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA----TEKFKEISAAYE 127
           V+ A    +  +G+    + +++K  YRK     HPD              F E++ A+ 
Sbjct: 28  VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 87

Query: 128 VLSDDKKRAMY 138
              +  ++ +Y
Sbjct: 88  EFENQGQKPLY 98

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 78.2 bits (192), Expect = 6e-19
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV        G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 77.3 bits (190), Expect = 1e-18
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 75.2 bits (184), Expect = 2e-17
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD   +    EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF------DLF--ETFFG 170
           A    +G     + +    +      +      +LF  E    
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPS 108

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY-- 281
            C+ C G G K G+  + C++C G+G    T Q    +    + C  C G G++I     
Sbjct: 4   LCKECEGRGGKKGAVKK-CTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 282 CRKCSGEGRIR 292
           C+ C+G+    
Sbjct: 63  CKSCNGKKVEN 73

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 69.4 bits (169), Expect = 1e-15
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 3/73 (4%)

Query: 223 ETCEVCTGTG---AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279
             CE C   G   A    +   C +C G+   M     P       + C +         
Sbjct: 12  GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK 71

Query: 280 EYCRKCSGEGRIR 292
             C  C  +GR  
Sbjct: 72  PTCESCHDDGRTS 84

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (157), Expect = 4e-14
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ +      +   G      K  I +++ PG   G+ +    +GD  P+ G    L 
Sbjct: 15  FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 331 VYLDVEEIP 339
             +  +  P
Sbjct: 72  FVIQEKSHP 80

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEE 337
           K ++V V PG+  G  +   GE D  P    PGD+   +    
Sbjct: 31  KILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERP 72

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
            GGE  +                   + +     ++ G    + G+G   P+ G  G+L 
Sbjct: 22  AGGEFALEHVSGDWL----------KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLI 71

Query: 331 VYLDVE 336
           +   ++
Sbjct: 72  IKFTIK 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.79
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.71
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.68
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.67
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.66
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.64
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.56
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.41
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.2
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.14
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.95
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.66
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	97.66
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.54
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	93.87
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	85.31

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.1e-24  Score=160.25  Aligned_cols=72  Identities=56%  Similarity=0.916  Sum_probs=66.9

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~  147 (368)
                      .+|||+||||+++||.+|||+|||+|++++|||+++. +.+.++|++|++||+||+||.+|+.||+||.+++.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            5799999999999999999999999999999999874 56788999999999999999999999999987653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-24  Score=160.71  Aligned_cols=74  Identities=61%  Similarity=1.030  Sum_probs=70.4

Q ss_pred             cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (368)
Q Consensus        75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~  148 (368)
                      |.+|||+||||+++||.+||++||+++++++|||++..+.+.++|+.|++||+||+||.+|+.||+||+++++.
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            56899999999999999999999999999999999988899999999999999999999999999999988753

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=7.6e-21  Score=147.69  Aligned_cols=69  Identities=32%  Similarity=0.570  Sum_probs=62.3

Q ss_pred             ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+++.       +.+.++|+.|++||+||+||.+|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            355799999999999999999999999999999999864       236788999999999999999999999753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.79  E-value=7e-21  Score=153.42  Aligned_cols=67  Identities=28%  Similarity=0.429  Sum_probs=61.1

Q ss_pred             ccccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (368)
Q Consensus        76 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g  145 (368)
                      ..|||+||||+++|  +.++||+|||+||+++|||++++   .++|++|++||+||+|+.+|+.||.++...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~---~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh---HHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  78899999999999999999864   467999999999999999999999987654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.71  E-value=1.5e-18  Score=129.66  Aligned_cols=64  Identities=16%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             ccccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (368)
Q Consensus        76 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g  142 (368)
                      ..+||+||||++++  +.+|||+|||++++++|||++   +..++|++|++||++|+|+.+|..||.-+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~---g~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS---CCHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccC---CCHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            45899999999988  999999999999999999997   44678999999999999999999999743

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.7e-18  Score=125.51  Aligned_cols=64  Identities=28%  Similarity=0.482  Sum_probs=56.3

Q ss_pred             cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccchhhhhhhcc
Q 017647           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (368)
Q Consensus        77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~  140 (368)
                      .|||++|||+++  ++.+|||+|||++++++|||+....      .+.+.|+.|++||+||+||.+|+.|+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            389999999985  5589999999999999999997532      256789999999999999999999974

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.9e-17  Score=122.30  Aligned_cols=80  Identities=20%  Similarity=0.405  Sum_probs=67.3

Q ss_pred             cceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCcc
Q 017647          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (368)
Q Consensus       196 ~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (368)
                      ++|+++|.|||||+|+|+++++.+.+.    .|                 .|.+                          
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~----~~-----------------~g~~--------------------------   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRK----GP-----------------HGAS--------------------------   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE----ET-----------------TTEE--------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeeccee----cc-----------------cCCC--------------------------
Confidence            478999999999999999999886431    12                 2211                          


Q ss_pred             EEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCC
Q 017647          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (368)
Q Consensus       276 ~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~  339 (368)
                                       +.++++|.||||+++|++|+|+|+|++.++++.+|||+|+|++++||
T Consensus        34 -----------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 -----------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             -----------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             -----------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                             24679999999999999999999999988777899999999999997

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=9.2e-18  Score=130.87  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=60.7

Q ss_pred             ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccchhhhhhh
Q 017647           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (368)
Q Consensus        72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~y  138 (368)
                      +.|...+.|++|||...++.+|||+|||++++++|||++..+.    +.+.|+.|++||++|+||.+|+.|
T Consensus        28 vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             hcCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4466778999999999999999999999999999999876543    678999999999999999999988

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.2e-16  Score=116.84  Aligned_cols=73  Identities=26%  Similarity=0.476  Sum_probs=65.4

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      +++.|++++|.|+|+|||.|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            4688999999999999999999887531                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCC
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~  339 (368)
                                           .+.++|+||+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+
T Consensus        30 ---------------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 ---------------------RKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             ---------------------EEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             ---------------------CccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                                 3578999999999999999999999976 67799999999999995

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-17  Score=124.62  Aligned_cols=66  Identities=26%  Similarity=0.309  Sum_probs=57.9

Q ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (368)
Q Consensus        76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~  144 (368)
                      .+|+|+||+|+++||.+|||+|||+|+++||||+++.  ..+.++|+.|++||++|++   ++.||++...
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~~   82 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccchH
Confidence            3699999999999999999999999999999999875  3578999999999999974   6777776543

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.2e-15  Score=114.21  Aligned_cols=78  Identities=44%  Similarity=0.963  Sum_probs=69.8

Q ss_pred             cceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       212 G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      |.+++|.+.+.+.|+.|+|+|+..+..+.+|+.|+|+|++..    .+|+++++++|+.|+|+|+++.++|..|+|.|+|
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            677889999999999999999999888999999999998743    3467777889999999999999999999999987


Q ss_pred             EE
Q 017647          292 RL  293 (368)
Q Consensus       292 ~~  293 (368)
                      .+
T Consensus        77 ~k   78 (79)
T d1exka_          77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=8.5e-14  Score=102.51  Aligned_cols=72  Identities=28%  Similarity=0.652  Sum_probs=62.8

Q ss_pred             ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc--eeeeeeccceEEEE
Q 017647          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRL  293 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~g~g~v~~  293 (368)
                      +.+.|+.|+|+|...+. ..+|+.|+|+|+++...+++++++++..+|+.|+|+|+++.  ++|..|+|.|.+++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            46789999999998765 57899999999999888888877777789999999998874  68999999998764

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=3.7e-12  Score=97.24  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=70.4

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      ++|.|+.+++.|+|.||+.|+++++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            4688999999999999999998887521                                                    


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCC-CCCCccEEEEEEEEeCCCcccccCce
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL  348 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL  348 (368)
                                          ..+.++|+||+|+++|++++++|+|++... .+..|||+|+++|..|..++.++.++
T Consensus        32 --------------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~qk~~   88 (90)
T d1c3ga2          32 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA   88 (90)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred             --------------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHHHHh
Confidence                                034688999999999999999999998654 35689999999999998887766544

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=3.1e-11  Score=89.90  Aligned_cols=75  Identities=25%  Similarity=0.447  Sum_probs=63.2

Q ss_pred             ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (368)
Q Consensus       193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (368)
                      ++|.|+.++++|+|.||+.|+++++....                                                   
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~d---------------------------------------------------   32 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHVS---------------------------------------------------   32 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECSS---------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEecC---------------------------------------------------
Confidence            46889999999999999999988876310                                                   


Q ss_pred             CccEEEceeeeeeccceEEEEeeEEEEEeCCC--CcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCC
Q 017647          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (368)
Q Consensus       273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~  339 (368)
                                           ...++|+||++  +++|++++++|+|++..+++..|||||+++|+.|+
T Consensus        33 ---------------------g~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~Pk   80 (80)
T d1nlta2          33 ---------------------GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE   80 (80)
T ss_dssp             ---------------------SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred             ---------------------cceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcCC
Confidence                                 24567778777  99999999999999988777789999999998764

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.6e-06  Score=63.53  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=37.4

Q ss_pred             ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (368)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (368)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            .+|+.|+|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~k   78 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC------------CCCCCCCCceEeec
Confidence            35679999999964221     2568999999999864            68999999998864

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=5.1e-06  Score=59.92  Aligned_cols=46  Identities=28%  Similarity=0.690  Sum_probs=35.1

Q ss_pred             eecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE
Q 017647          223 ETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  278 (368)
                      ..|+.|+|+|.....         ...+|+.|+|+|+++..          ..+|+.|+|.|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC----------CCCCCCCCCeeEeC
Confidence            569999999965322         14679999999986532          15899999999764

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=4.8e-06  Score=60.97  Aligned_cols=29  Identities=34%  Similarity=0.467  Sum_probs=27.2

Q ss_pred             CcccccCceEEEeccCHhhhccCCeEEeC
Q 017647          340 GIQRDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       340 ~f~r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      .|+|+|+||+++++|++.|||+|++++|+
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~   29 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALE   29 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEE
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEE
Confidence            49999999999999999999999999874

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.54  E-value=9.4e-06  Score=60.57  Aligned_cols=68  Identities=21%  Similarity=0.430  Sum_probs=49.1

Q ss_pred             ecccccCCccccCce---eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647          224 TCEVCTGTGAKMGSK---MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (368)
Q Consensus       224 ~C~~C~G~G~~~~~~---~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v  291 (368)
                      .|..|+|.|......   ...|..|+|.|.........++.+..-..|..|+|.|..+.+.|..|++.|++
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            699999988644332   45799999998654333333333344478999999999889999999998754

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.87  E-value=0.01  Score=41.73  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=23.9

Q ss_pred             cccCceEEEeccCHhhhccCCeEEeC
Q 017647          343 RDGIDLFSTISISYLDAIMGTVVKVT  368 (368)
Q Consensus       343 r~g~dL~~~~~Isl~eALlG~~v~V~  368 (368)
                      |+|.|+++++.|||.||++|++++|+
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~   27 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLA   27 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEE
T ss_pred             CCCCCEEEEEEecHHHHHhhccccee
Confidence            68999999999999999999998763

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=85.31  E-value=0.047  Score=39.42  Aligned_cols=44  Identities=20%  Similarity=0.489  Sum_probs=31.0

Q ss_pred             eecccccCCccccCce---------eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE
Q 017647          223 ETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (368)
Q Consensus       223 ~~C~~C~G~G~~~~~~---------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  278 (368)
                      ..|..|+|+|......         -..|..|+|.|..+.            ..|..|++.|++.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~------------~~C~~CH~~gr~~   84 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK------------PTCESCHDDGRTS   84 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCC------------CCSTTTCSSCCCH
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCcCC------------CccccccCCCccc
Confidence            5799999998653221         356777777765332            6799999999753