Citrus Sinensis ID: 017655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MKEGGPGKRRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHccccccccccccccHHHccccccccHHHHcccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEcHHHHHHHHHHHHHcccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEcc
Coil and Loop (DISEMBL)
mkeggpgkrrnfiqngqgsisksnskkvsgkNFIKNRTKEFSQGfqkshfhqmhngkrkfgfyndqkpkghgngkAIKFGlanqmnqpqekKRKSLALTYTEQEVKQWCEERrknyptkaninkkltekqsnsdvIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENtmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkPTLLQKLLSADVKRDKSHLLQTFRFMAINSffkdwpekpvnfplvmvkdggaageVVEEKSlllgeedsegkgRRMVEHfehdenrermhhniqgfedenddeeedndngEQMKVYIAgkgntndehvrleeeegeiid
Flexible Loop (DISEMBL)
mkeggpgkrrnfiqngqgsisksnskkvsGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGlanqmnqpqekKRKSLALTYTEQEVKqwceerrknyptkaninkkltekqsnsdviDKEAKMRREQLKEILAKqaelgvevaeipsyylldskkqVRARventmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkptLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVeekslllgeedsegkgrRMVEHfehdenrermhhniqgfedenddeeEDNDNGEQMKVYIagkgntndehvrleeeegeiid
Low Complexity Region (SEG)
MKEGGPGKRRNFIQNGQgsisksnskkvsgknFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFedenddeeedndnGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Disordered region (IsUnstruct)
***********************************************************************************************************W*****************************************ILAKQAELGVEVAEIPSYYLLDS********************************************************************V*RDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEV***********************************************************************************
Disordered Region (DISOPRED)
****************************************************************************************************TEQEVKQWCEERRKNYP*********************************************************************************************************************KLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLV***********************************************************************************RLEE****I**
Disordered Region (DISEMBL)
********RRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRY************************KKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFED***********GEQMKVYIAGKGNTNDEHVRL*********
Disordered Region (DISPRO)
*********************************************************************************************KSLALTYTEQEVKQWCEERRKNYPTKANINKKLT******DVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYL**********************************************************KKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEE****KGRRMVEHFEH***********************DNDNGEQMKVYIAGKGNTNDEHVRLEEEE**II*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGGPGKRRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVYIAGKGNTNDEHVRLEEEEGEIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
224100559	659	predicted protein [Populus trichocarpa]	0.880	0.491	0.447	4e-69
147775405	605	hypothetical protein VITISV_043067 [Viti	0.812	0.494	0.507	4e-69
224113339	674	predicted protein [Populus trichocarpa]	0.888	0.485	0.450	1e-65
255554855	273	conserved hypothetical protein [Ricinus	0.581	0.783	0.587	2e-63
359487059	1031	PREDICTED: uncharacterized protein LOC10	0.600	0.214	0.576	7e-60
449446325	599	PREDICTED: uncharacterized protein LOC10	0.834	0.512	0.443	8e-60
449494110	552	PREDICTED: uncharacterized LOC101213190	0.834	0.556	0.443	1e-59
145334515	470	uncharacterized protein [Arabidopsis tha	0.657	0.514	0.519	3e-58
297807865	454	hypothetical protein ARALYDRAFT_488722 [	0.633	0.513	0.497	3e-56
356553962	822	PREDICTED: uncharacterized protein LOC10	0.929	0.416	0.415	2e-53

>gi|224100559|ref|XP_002311923.1| predicted protein [Populus trichocarpa] gi|222851743|gb|EEE89290.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 175/391 (44%), Positives = 222/391 (56%), Gaps = 67/391 (17%)

Query: 11  NFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRKFGFYNDQKPK 69
           N  +NGQ S  KS  +K SGKN   NR +  SQ G QKS F+ M NGKRK  F N+   K
Sbjct: 303 NTARNGQSSTPKSKWEKPSGKNLKNNRNRGRSQSGHQKSDFNCMDNGKRKLEFSNEHGRK 362

Query: 70  GHGNGKAIKFGLANQMNQPQEKKRK-SLALTYTEQEVKQWCEERRKNYPTKANINKKLTE 128
           G+GN +  KFG  +  +Q  E+K K S    YTEQE+KQW E RRK+YPTK +I KK  E
Sbjct: 363 GNGNERVAKFGRTDLTDQATEEKSKPSRTFFYTEQEIKQWRESRRKHYPTKTSIEKKQME 422

Query: 129 KQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS---------------- 172
                 VID+EA  R +QLKEILAKQAELGVEVAEIP  YLLDS                
Sbjct: 423 ------VIDREANFRHKQLKEILAKQAELGVEVAEIPPDYLLDSEKLGVEVAEIPPPQVL 476

Query: 173 ---------------KKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADK 217
                          +KQ   R +N   L K+G+F N +DKRGR+ +K + +K+   A++
Sbjct: 477 SSEKLGVEVAEIPPPQKQEHGREDNRRSLTKKGKFWNKHDKRGRFNKKGRSAKQVGSANE 536

Query: 218 DSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVK 277
           +         +KPTLL+KLLS D+KRDK  LLQ FRFM  NSFFKDWPEKP+ FP V+VK
Sbjct: 537 E---------RKPTLLEKLLSTDIKRDKRQLLQVFRFMVANSFFKDWPEKPLKFPSVVVK 587

Query: 278 DGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDND 337
           + G   E+VE+KS L+GEE SE +   + E+F                  + DD  E + 
Sbjct: 588 EDGYEDEIVEKKSSLVGEEVSEDRNNTIAENF-----------------GDRDDNIEHDA 630

Query: 338 NGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 368
             E    ++ GK +  DE  R+  EEGEI+D
Sbjct: 631 QVELGNCFVRGKCDIVDEVDRV--EEGEIVD 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775405|emb|CAN73830.1| hypothetical protein VITISV_043067 [Vitis vinifera]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 199/315 (63%), Gaps = 16/315 (5%)

Query: 11  NFIQNGQGSISKSNSKKVSGKNFIKN-RTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPK 69
           NF+++   + S  N K  S KNF+ N + K    G +KS  H M NG+ K G  N+ + K
Sbjct: 252 NFVKDAGVNNSNPNWKNSSRKNFMXNPKGKNSHWGSRKSQLHHMQNGRGKAGISNENRGK 311

Query: 70  GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 129
           G  N  A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  EK
Sbjct: 312 GLSNNMAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSAEK 371

Query: 130 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MPLN 187
            +NS+VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN      
Sbjct: 372 LTNSEVIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKAFG 431

Query: 188 KRGRFQNNYDKRGRYKRK--------DQFSKEQKLADKDS-----SNTSSFNKKKPTLLQ 234
           K+ RFQN  +KR R+ RK        D F+K+Q+LA  DS     SN    NKKK TLLQ
Sbjct: 432 KKERFQNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGTDSGDTNASNQPPLNKKKQTLLQ 491

Query: 235 KLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLG 294
           KLLS D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV VK+ G  GEVV+ KS    
Sbjct: 492 KLLSTDIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVAVKETGCQGEVVDRKSSPTS 551

Query: 295 EEDSEGKGRRMVEHF 309
           +   +G  +   E F
Sbjct: 552 KGVPQGGRKTXAEEF 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113339|ref|XP_002316461.1| predicted protein [Populus trichocarpa] gi|222865501|gb|EEF02632.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 184/408 (45%), Positives = 222/408 (54%), Gaps = 81/408 (19%)

Query: 11  NFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRKFGFYNDQKPK 69
           N  +NGQGS   S     SGKNF  N  +E SQ G QKS FH+M NGKRK GF N    K
Sbjct: 298 NPAKNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRKLGFSNKHGGK 357

Query: 70  GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 129
           G GN +A KFG ++  NQ  E+KR  +   YTEQE+KQW E RRK++PTK NI KK TEK
Sbjct: 358 GKGNERAAKFGRSDPSNQVMEQKRTHI---YTEQEIKQWRESRRKHFPTKTNIEKKQTEK 414

Query: 130 QSNSDVIDKEAKMRRE-------------QLKEILAKQAELGVEVAEIPSYY-------- 168
             +S VIDKEA  RR+             QLKEILAKQAELGVEVAEIP  Y        
Sbjct: 415 LIDSGVIDKEANFRRKVLNALPRKLDDKLQLKEILAKQAELGVEVAEIPPEYMLDSEKLG 474

Query: 169 ----------------------------LLDSKKQVRARVENTMPLNKRGRFQNNYDKRG 200
                                       LLDS+KQ   R +N   L K+GRF N +D+RG
Sbjct: 475 VEVAETPLSYLLDSEKLGVEAAEIPPHHLLDSEKQEHGREDNRRSLTKKGRFWNKHDRRG 534

Query: 201 RYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSF 260
           RYKRK +   +  L +++         +KPTLL+KLL AD+KRDK  LLQ FRFM  NSF
Sbjct: 535 RYKRKGRSDMQLGLENEE---------RKPTLLEKLLCADIKRDKHRLLQVFRFMVANSF 585

Query: 261 FKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHH 320
           FKDW +KP+ FP V+VK+ G   E  EEK  L+GEE+SE      VE F           
Sbjct: 586 FKDWSDKPLKFPSVVVKEDGCKDEPQEEKPSLVGEEESEVPNNTTVEDF----------- 634

Query: 321 NIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 368
                  + DD +E +   E     + GK +  DE  R+  EEGEIID
Sbjct: 635 ------GDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRV--EEGEIID 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554855|ref|XP_002518465.1| conserved hypothetical protein [Ricinus communis] gi|223542310|gb|EEF43852.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 166/218 (76%), Gaps = 4/218 (1%)

Query: 94  KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAK 153
           +S AL YTEQE+K W EERRKN+P+KANI K  +E+ +NS  IDKEAK+RRE+LKEILAK
Sbjct: 9   RSPALIYTEQEIKLWREERRKNFPSKANIEKMCSERVTNSGGIDKEAKLRRERLKEILAK 68

Query: 154 QAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 213
           QAELGVEVAEIPS+YL DS+KQV+ + ++     K+GR ++ +D+RGRY +KD  +++  
Sbjct: 69  QAELGVEVAEIPSHYLSDSEKQVKVKKDSRRSAPKKGRSRHKHDRRGRYNKKDGLTQQNT 128

Query: 214 LADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPL 273
           LA KDSSN SSF++ KPTLLQKLLSA+V++DK HLLQ FRFM +NSFF D PEKP+ FP 
Sbjct: 129 LAKKDSSNGSSFSRTKPTLLQKLLSAEVRKDKHHLLQVFRFMVMNSFFDDGPEKPLKFPS 188

Query: 274 VMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEH 311
           V+VK+     EVV EK+ + G+  SE   +  VE+  H
Sbjct: 189 VVVKE----DEVVAEKTSITGKGISEVSNKTAVENSGH 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487059|ref|XP_002271061.2| PREDICTED: uncharacterized protein LOC100252331 [Vitis vinifera]

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 136/236 (57%), Positives = 163/236 (69%), Gaps = 15/236 (6%)

Query: 70  GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 129
           G  N  A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  EK
Sbjct: 738 GLSNNMAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSAEK 797

Query: 130 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MPLN 187
            +NS+VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN      
Sbjct: 798 LTNSEVIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKAFG 857

Query: 188 KRGRFQNNYDKRGRYKRK--------DQFSKEQKLADKDS-----SNTSSFNKKKPTLLQ 234
           K+ RFQN  +KR R+ RK        D F+K+Q+LA KDS     SN    NKKK TLLQ
Sbjct: 858 KKERFQNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGKDSGDMNASNQPPLNKKKQTLLQ 917

Query: 235 KLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKS 290
           KLLS D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV+VK+ G  GEVV+ KS
Sbjct: 918 KLLSTDIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVVVKETGCQGEVVDRKS 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446325|ref|XP_004140922.1| PREDICTED: uncharacterized protein LOC101213190 [Cucumis sativus]

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 214/352 (60%), Gaps = 45/352 (12%)

Query: 31  KNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQE 90
           +NF++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E
Sbjct: 279 RNFMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKE 334

Query: 91  KKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEI 150
           +KR SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEI
Sbjct: 335 QKR-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEI 393

Query: 151 LAKQAELGVEVAEIPSYYLL-----DSKKQVRARV-------ENTMPLNKRGRFQNNYDK 198
           LAKQAELGVEVAEIP  YL      D++KQ   R        E ++   ++   QN  +K
Sbjct: 394 LAKQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASI---EKENSQNRLNK 450

Query: 199 RGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAIN 258
           RGR K+K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +N
Sbjct: 451 RGRCKKKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMN 509

Query: 259 SFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRE 316
           SFFK+WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD    
Sbjct: 510 SFFKEWPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD---- 565

Query: 317 RMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 368
                    + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 566 --------IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494110|ref|XP_004159451.1| PREDICTED: uncharacterized LOC101213190 [Cucumis sativus]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 214/352 (60%), Gaps = 45/352 (12%)

Query: 31  KNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQE 90
           +NF++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E
Sbjct: 232 RNFMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKE 287

Query: 91  KKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEI 150
           +KR SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEI
Sbjct: 288 QKR-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEI 346

Query: 151 LAKQAELGVEVAEIPSYYLL-----DSKKQVRARV-------ENTMPLNKRGRFQNNYDK 198
           LAKQAELGVEVAEIP  YL      D++KQ   R        E ++   ++   QN  +K
Sbjct: 347 LAKQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASI---EKENSQNRLNK 403

Query: 199 RGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAIN 258
           RGR K+K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +N
Sbjct: 404 RGRCKKKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMN 462

Query: 259 SFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRE 316
           SFFK+WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD    
Sbjct: 463 SFFKEWPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD---- 518

Query: 317 RMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 368
                    + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 519 --------IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334515|ref|NP_001078603.1| uncharacterized protein [Arabidopsis thaliana] gi|145358174|ref|NP_197345.2| uncharacterized protein [Arabidopsis thaliana] gi|60547897|gb|AAX23912.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905555|gb|AAZ52755.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905557|gb|AAZ52756.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|332005180|gb|AED92563.1| uncharacterized protein [Arabidopsis thaliana] gi|332005181|gb|AED92564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/252 (51%), Positives = 177/252 (70%), Gaps = 10/252 (3%)

Query: 43  QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL--ANQMNQPQEKKRKSLALTY 100
           QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  ++  N  +EKKR S AL Y
Sbjct: 202 QGFQRPQLHQADNGKRKSGFNKDHR--GKGNNNKMKTGLDGSDTGNIAKEKKR-SYALMY 258

Query: 101 TEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVE 160
           T +EV+QW E RRKNYPTK  + KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELGVE
Sbjct: 259 TPREVQQWREARRKNYPTKFLVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGVE 317

Query: 161 VAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQF-SKEQKLADKDS 219
           VAE+PS+YL ++ +QV     N     ++GRFQNN   + R+ RKD+F +K+ +L DK S
Sbjct: 318 VAEVPSHYLSNNDEQVNGDRGNNN--GRKGRFQNNRRNKRRHDRKDKFDNKKPRLEDKKS 375

Query: 220 SNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDG 279
           S  SS   +KPTLL+KLLSAD+KRDKS LLQ FRFM +NS  K++PE+P+  PL+ VK+ 
Sbjct: 376 SQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPEQPLKLPLITVKET 435

Query: 280 GAAGEVVEEKSL 291
           G   + +E+ S+
Sbjct: 436 GCE-DAMEDPSI 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807865|ref|XP_002871816.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata] gi|297317653|gb|EFH48075.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 170/239 (71%), Gaps = 6/239 (2%)

Query: 43  QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL-ANQMNQPQEKKRKSLALTYT 101
           QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  +  +   ++KR+S AL YT
Sbjct: 203 QGFQRPQLHQADNGKRKSGFNKDHR--GKGNYNKMKNGLDGSDADNIAKEKRRSYALMYT 260

Query: 102 EQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEV 161
            ++V QW E RRKN+PT+ N+ KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELG+EV
Sbjct: 261 PKDVNQWREARRKNFPTRLNVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGIEV 319

Query: 162 AEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSN 221
           A++PS+YL ++ ++V    +N     ++ +FQNN  K+ R+ RKD+F K  +L DK+SS 
Sbjct: 320 ADVPSHYLSNTDERVHG--DNGANDGQKRKFQNNRHKQRRHGRKDKFDKTPRLDDKNSSQ 377

Query: 222 TSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGG 280
            S    KKPTLL+KLLSA++KRDK HLLQ FRFM +NSF K++PE+P+  PL+ V++ G
Sbjct: 378 ESPMTTKKPTLLEKLLSANIKRDKIHLLQVFRFMVMNSFLKEFPEQPLKLPLITVEETG 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553962|ref|XP_003545319.1| PREDICTED: uncharacterized protein LOC100786384 [Glycine max]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/359 (41%), Positives = 215/359 (59%), Gaps = 17/359 (4%)

Query: 15  NGQGSISKSNSKKVSGKNFIKNRTKE--FSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHG 72
           N + ++  SN K    KNF KN+     F  GFQKS FH ++NGK+  GF  +   KG  
Sbjct: 476 NIKTNVPNSNWKGSPSKNF-KNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPIEHNGKGPN 534

Query: 73  NGKAIKFGLANQMNQPQEKKR---KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 129
           +G+   +GL     +P+E K+   +SL++TYT QE++QW E R+KN+P   NI KK +E 
Sbjct: 535 SGRGGHYGL-----KPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNNIQKKHSEH 589

Query: 130 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKR 189
             +   I++E   R  +LKE+LAKQAELGVEVAEIPSYYL +S  Q   + E       +
Sbjct: 590 PKDRKAINREVLQR--ELKEVLAKQAELGVEVAEIPSYYLKNSDNQA-LQSEGKNKFTDK 646

Query: 190 GRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLL 249
            +FQN ++K+    RK +F+K QK  DKD S + S  K+KPTLLQKLLS+DVKRDKSHL+
Sbjct: 647 RKFQNKFNKKS--DRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDVKRDKSHLI 704

Query: 250 QTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHF 309
           Q FRFM +NSFFK   +KP+ +PLV+VK+ G+  +  EEK L  G++  +G     V+  
Sbjct: 705 QVFRFMVMNSFFKHCLDKPLRYPLVVVKEKGSEVD-GEEKYLHTGKDVLKGGNEETVQKI 763

Query: 310 EHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 368
               N        +  +D+ +D   DN+  +     +  + ++ +   + +EEEGEII+
Sbjct: 764 VTFNNDNSHDCEDEDSDDDENDSIVDNNLHKDPSSLVKRQCDSGEGIGKFDEEEGEIIE 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2146238	470	NUFIP "AT5G18440" [Arabidopsis	0.657	0.514	0.519	1.2e-60
ZFIN|ZDB-GENE-030131-6203	406	zgc:171476 "zgc:171476" [Danio	0.100	0.091	0.475	5.1e-06
RGD|1359440	486	Nufip1 "nuclear fragile X ment	0.236	0.179	0.350	5.9e-06
UNIPROTKB|Q9UHK0	495	NUFIP1 "Nuclear fragile X ment	0.154	0.115	0.446	7e-06
UNIPROTKB|J9P0P5	487	NUFIP1 "Uncharacterized protei	0.154	0.117	0.446	2.2e-05
UNIPROTKB|F1PK39	488	NUFIP1 "Uncharacterized protei	0.154	0.116	0.446	2.2e-05
UNIPROTKB|F1RJZ3	494	NUFIP1 "Uncharacterized protei	0.154	0.115	0.446	2.2e-05
UNIPROTKB|E1C0G7	360	NUFIP1 "Uncharacterized protei	0.092	0.094	0.459	3.9e-05
UNIPROTKB|E1C0G8	434	NUFIP1 "Uncharacterized protei	0.092	0.078	0.459	6.6e-05
UNIPROTKB|F1NXC7	464	NUFIP1 "Uncharacterized protei	0.092	0.073	0.459	7.9e-05

TAIR|locus:2146238 NUFIP "AT5G18440" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 131/252 (51%), Positives = 177/252 (70%)

Query:    43 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL--ANQMNQPQEKKRKSLALTY 100
             QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  ++  N  +EKKR S AL Y
Sbjct:   202 QGFQRPQLHQADNGKRKSGFNKDHR--GKGNNNKMKTGLDGSDTGNIAKEKKR-SYALMY 258

Query:   101 TEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVE 160
             T +EV+QW E RRKNYPTK  + KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELGVE
Sbjct:   259 TPREVQQWREARRKNYPTKFLVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGVE 317

Query:   161 VAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQF-SKEQKLADKDS 219
             VAE+PS+YL ++ +QV     N     ++GRFQNN   + R+ RKD+F +K+ +L DK S
Sbjct:   318 VAEVPSHYLSNNDEQVNGDRGNNN--GRKGRFQNNRRNKRRHDRKDKFDNKKPRLEDKKS 375

Query:   220 SNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDG 279
             S  SS   +KPTLL+KLLSAD+KRDKS LLQ FRFM +NS  K++PE+P+  PL+ VK+ 
Sbjct:   376 SQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPEQPLKLPLITVKET 435

Query:   280 GAAGEVVEEKSL 291
             G   + +E+ S+
Sbjct:   436 GCE-DAMEDPSI 446

GO:0003674 "molecular_function" evidence=ND

GO:0000491 "small nucleolar ribonucleoprotein complex assembly" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ZFIN|ZDB-GENE-030131-6203 zgc:171476 "zgc:171476" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query:   101 TEQEVKQWCEERRKNYPTKANINKK--LTE-KQSNSDVID 137
             TE+++++W EERR+NYPT  N+ KK  L E K+   DV++
Sbjct:   143 TEEDIRRWREERRRNYPTLRNVEKKQKLMEVKEQRGDVLE 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359440 Nufip1 "nuclear fragile X mental retardation protein interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
 Identities = 34/97 (35%), Positives = 49/97 (50%)

Query:    43 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTE 102
             +GF+    + +H  + K     D     H   K ++F   N M+ P  KK K      T 
Sbjct:   174 RGFKNQEKYDIHMSEHKKCPEVDCSFSAHE--KIVQFHWRN-MHAPGMKKIK----LDTP 226

Query:   103 QEVKQWCEERRKNYPTKANIN-KKLT--EKQSNSDVI 136
             +++ +W EERRKNYPT ANI  KKL   EK+   +V+
Sbjct:   227 EDIARWREERRKNYPTLANIERKKLLQLEKEKRGEVL 263

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005726 "perichromatin fibrils" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0022626 "cytosolic ribosome" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA;ISO

GO:0030674 "protein binding, bridging" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048786 "presynaptic active zone" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

UNIPROTKB|Q9UHK0 NUFIP1 "Nuclear fragile X mental retardation-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:    75 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 131
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 265

Query:   132 NSDVI 136
                V+
Sbjct:   266 RGAVL 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=NAS

GO:0006396 "RNA processing" evidence=TAS

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005726 "perichromatin fibrils" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0030515 "snoRNA binding" evidence=IDA

GO:0070761 "pre-snoRNP complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J9P0P5 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:    75 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 131
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   208 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 262

Query:   132 NSDVI 136
                V+
Sbjct:   263 RGAVL 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PK39 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:    75 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 131
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   209 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 263

Query:   132 NSDVI 136
                V+
Sbjct:   264 RGAVL 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RJZ3 NUFIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:    75 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 131
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   210 KIVQFHWRN-MHAPGVKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 264

Query:   132 NSDVI 136
             +  V+
Sbjct:   265 SGAVL 269

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   103 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 136
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G8 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   103 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 136
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NXC7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   103 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 136
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:   101 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 137

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
pfam10453	57	pfam10453, NUFIP1, Nuclear fragile X mental retard	5e-05

>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 101 TEQEVKQWCEERRKNYPTKANINKKLTEKQSN 132
           T +E+ +W EER+KNYPTKANI KK   ++  
Sbjct: 20  TPEEIAKWIEERKKNYPTKANIEKKKKAEEER 51

Proteins in this family have been implicated in the assembly of the large subunit of the ribosome and in telomere maintenance. Some proteins in this family contain a CCCH zinc finger. This family contains a protein called human fragile X mental retardation-interacting protein 1, which is known to bind RNA and is phosphorylated upon DNA damage. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PF10453	56	NUFIP1: Nuclear fragile X mental retardation-inter	99.15

>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []

Probab=99.15  E-value=4.4e-11  Score=91.38  Aligned_cols=34  Identities=62%  Similarity=0.940  Sum_probs=30.1

Q ss_pred             cccccccCHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 017655           94 KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTE  128 (368)
Q Consensus        94 k~~~l~~t~eEI~aWraERKKNyPT~aNVekK~ae  128 (368)
                      +++.| +||+||++||+||||||||++||++|+.+
T Consensus        13 ~~~~L-~t~eeI~~W~eERrk~~PT~~~i~~k~~~   46 (56)
T PF10453_consen   13 TSIKL-QTPEEIAKWIEERRKNYPTKANIEKKKAE   46 (56)
T ss_pred             ceeec-CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            55555 69999999999999999999999988875

It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 55/438 (12%), Positives = 116/438 (26%), Gaps = 176/438 (40%)

Query: 21  SKSNSKKVSGKNFIKNRTKEFS--QGFQKSHF--HQMHNGKRKFGFYNDQKPKG---HG- 72
           ++     +  + +I+ R + ++  Q F K +    Q +   R+      +  K     G 
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGV 158

Query: 73  --NGKA----------------------IKFG--------------LANQMNQP-QEKKR 93
             +GK                       +                 L  Q++     +  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 94  KSLALTYTEQEVKQWCEE--RRKNYPT--------------KA-NINKKL---TEKQSNS 133
            S  +      ++       + K Y                 A N++ K+   T  +  +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 134 DVIDKEAKMR-----------REQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVEN 182
           D +                   +++K +L K   L     ++P              V  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPR------------EVLT 324

Query: 183 TMPL----------NKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTL 232
           T P           +    +  N+    ++   D+ +   +         SS N  +P  
Sbjct: 325 TNPRRLSIIAESIRDGLATWD-NW----KHVNCDKLTTIIE---------SSLNVLEPAE 370

Query: 233 LQKLLSADVKRDKSHLLQTFRFMAINSFFKD-----------WPEKPVNFPLVMVKDGGA 281
            +K+               F  +++  F              W +   +  +V+V     
Sbjct: 371 YRKM---------------FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNK--- 410

Query: 282 AGEVVEEKSLLLGEEDSEGKGRRMVEH---FE---HDENRERMHHNI-------QGFEDE 328
               + + SL+  E+    K   +       E     EN   +H +I       + F D 
Sbjct: 411 ----LHKYSLV--EKQP--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DS 461

Query: 329 NDDEEEDNDNGEQMKVYI 346
           +D      D       Y 
Sbjct: 462 DDLIPPYLDQ------YF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	88.7

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.073  Score=38.66  Aligned_cols=22  Identities=9%  Similarity=0.012  Sum_probs=17.3

Q ss_pred             CcceeccCC-CccccCCCCCcchhh
Q 017655          189 RGRFQNNYD-KRGRYKRKDQFSKEQ  212 (368)
Q Consensus       189 ~CKF~nrg~-~RgRcgrKcrf~h~~  212 (368)
                      +||||.+|. |.  -|.+|+|+|.|
T Consensus         2 PCK~yHtg~kCy--~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCI--NGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCS--SCTTCSSBCCC
T ss_pred             CcceeecCCccc--CCCcccccCCc
Confidence            699999874 33  47899999965