Citrus Sinensis ID: 017669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MTMQRIISKSRLDAFASVFVTLHphetsallhsssCFFFILSAYFVVLplrdegaislglsklpglfvGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSssigylsklesvSHLESLDavssnakedpkaavdqgstansadwgdhgWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsivkpHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Flexible Loop (DISEMBL)
mtmqriisksrlDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsiVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Low Complexity Region (SEG)
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRffsvsllvffllwqsssIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIprrpeelpplrKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAgqltltgtsflllgll
Disordered region (IsUnstruct)
**********RLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLE*******************************ADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQ************************************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL*
Disordered Region (DISOPRED)
**************FASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGA**************************ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Disordered Region (DISEMBL)
********KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHL***********************ANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELP*******************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Disordered Region (DISPRO)
****RIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVS**********V******NSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDP************************KPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSELFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
297736512	503	unnamed protein product [Vitis vinifera]	0.964	0.705	0.689	1e-125
449516782	490	PREDICTED: uncharacterized protein LOC10	0.929	0.697	0.638	1e-124
449457421	490	PREDICTED: uncharacterized protein LOC10	0.929	0.697	0.638	1e-124
225448643	492	PREDICTED: uncharacterized protein LOC10	0.934	0.699	0.673	1e-121
392938140	507	plasma membrane ATP/ADP transporter TLC1	0.929	0.674	0.603	1e-114
42567662	496	TLC ATP/ADP transporter [Arabidopsis tha	0.934	0.693	0.614	1e-114
10176743	496	unnamed protein product [Arabidopsis tha	0.934	0.693	0.608	1e-113
30680874	511	TLC ATP/ADP transporter [Arabidopsis tha	0.934	0.673	0.608	1e-113
30680867	469	TLC ATP/ADP transporter [Arabidopsis tha	0.934	0.733	0.608	1e-113
297806531	499	hypothetical protein ARALYDRAFT_487324 [	0.907	0.669	0.628	1e-112

>gi|297736512|emb|CBI25383.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/377 (68%), Positives = 291/377 (77%), Gaps = 22/377 (5%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++S L    S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS        S
Sbjct: 63  VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSS-----AGHS 117

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
            S  +  D VSS  KED +  V Q    +S  W  HGWFYV VR+G FLWV+LLNLITIS
Sbjct: 118 SSKWKGSDFVSSTLKEDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITIS 177

Query: 188 STWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMDSE                 LFGSLFA GMA+LGP+LLLFAA LMELAAQ
Sbjct: 178 STWARIIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQ 237

Query: 231 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG 290
           SSKGI + I    EE+  +RKAD D ++ ADGQ AP  K  SP+S TS++ P +WA+LDG
Sbjct: 238 SSKGIIRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDG 297

Query: 291 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFI 350
           LRLI SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFI
Sbjct: 298 LRLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFI 357

Query: 351 LAGQLTLTGTSFLLLGL 367
           LAGQLTLTG    + G+
Sbjct: 358 LAGQLTLTGRILTIAGV 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516782|ref|XP_004165425.1| PREDICTED: uncharacterized protein LOC101229022 [Cucumis sativus]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/379 (63%), Positives = 284/379 (74%), Gaps = 37/379 (9%)

Query: 6   IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
           IISKSRLDA  S FVT+HPHE SALLHS+ CFFFILSAYFVVLPLRDEGAISLGLS LP 
Sbjct: 3   IISKSRLDALVSAFVTVHPHEISALLHSAFCFFFILSAYFVVLPLRDEGAISLGLSNLPS 62

Query: 66  LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
           LFVGSL+LTLIAAPVS+ IFSLPNLSK KALVLIHRFFSVSL+ FF+LWQSSS G+ SK 
Sbjct: 63  LFVGSLVLTLIAAPVSSHIFSLPNLSKGKALVLIHRFFSVSLVAFFILWQSSSTGHSSK- 121

Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
                             DPK   DQ S+ +S  W  HGWFYV+VR+GFFLWVALLNLIT
Sbjct: 122 ------------------DPKDYGDQSSSISSIGWDKHGWFYVAVRIGFFLWVALLNLIT 163

Query: 186 ISSTWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELA 228
           ISSTWARVIDVMDSE                 LFGSLFA  MA+LGP+LLLF+A LME A
Sbjct: 164 ISSTWARVIDVMDSESGARLFGFIGAGATLGQLFGSLFATVMAWLGPFLLLFSAILMEFA 223

Query: 229 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 288
           A+ S+GI +++P   EEL  +R AD    + ++G    A K  SP++++++ KPH WAI 
Sbjct: 224 ARLSEGINQDMPHPGEELSLIRDADPSHENDSEGLGTSAFKGHSPKANSTM-KPHPWAIF 282

Query: 289 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 348
           DG+ LIFSS+YL+ V+LFLWLSAV+SSFFY QKV +IA+TV++SLGRR+L A INSFIAV
Sbjct: 283 DGMMLIFSSSYLMCVALFLWLSAVISSFFYLQKVGIIAITVTTSLGRRKLFALINSFIAV 342

Query: 349 FILAGQLTLTGTSFLLLGL 367
           FILAGQLT+TG    + G+
Sbjct: 343 FILAGQLTVTGHILTIAGV 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457421|ref|XP_004146447.1| PREDICTED: uncharacterized protein LOC101212005 [Cucumis sativus]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/379 (63%), Positives = 284/379 (74%), Gaps = 37/379 (9%)

Query: 6   IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
           IISKSRLDA  S FVT+HPHE SALLHS+ CFFFILSAYFVVLPLRDEGAISLGLS LP 
Sbjct: 3   IISKSRLDAIVSAFVTVHPHEISALLHSAFCFFFILSAYFVVLPLRDEGAISLGLSNLPS 62

Query: 66  LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
           LFVGSL+LTLIAAPVS+ IFSLPNLSK KALVLIHRFFSVSL+ FF+LWQSSS G+ SK 
Sbjct: 63  LFVGSLVLTLIAAPVSSHIFSLPNLSKGKALVLIHRFFSVSLVAFFILWQSSSTGHSSK- 121

Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
                             DPK   DQ S+ +S  W  HGWFYV+VR+GFFLWVALLNLIT
Sbjct: 122 ------------------DPKDYGDQSSSISSIGWDKHGWFYVAVRIGFFLWVALLNLIT 163

Query: 186 ISSTWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELA 228
           ISSTWARVIDVMDSE                 LFGSLFA  MA+LGP+LLLF+A LME A
Sbjct: 164 ISSTWARVIDVMDSESGARLFGFIGAGATLGQLFGSLFATVMAWLGPFLLLFSAILMEFA 223

Query: 229 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 288
           A+ S+GI +++P   EEL  +R AD    + ++G    A K  SP++++++ KPH WAI 
Sbjct: 224 ARLSEGINQDMPHPGEELSLIRDADPSHENDSEGLGTSAFKGHSPKANSTM-KPHPWAIF 282

Query: 289 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 348
           DG+ LIFSS+YL+ V+LFLWLSAV+SSFFY QKV +IA+TV++SLGRR+L A INSFIAV
Sbjct: 283 DGMMLIFSSSYLMCVALFLWLSAVISSFFYLQKVGIIAITVTTSLGRRKLFALINSFIAV 342

Query: 349 FILAGQLTLTGTSFLLLGL 367
           FILAGQLT+TG    + G+
Sbjct: 343 FILAGQLTVTGHILTIAGV 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448643|ref|XP_002279449.1| PREDICTED: uncharacterized protein LOC100258787 [Vitis vinifera]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/377 (67%), Positives = 286/377 (75%), Gaps = 33/377 (8%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++S L    S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS         
Sbjct: 63  VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSSA-------- 114

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
                     SS+  +D +  V Q    +S  W  HGWFYV VR+G FLWV+LLNLITIS
Sbjct: 115 --------GHSSSKWKDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITIS 166

Query: 188 STWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMDSE                 LFGSLFA GMA+LGP+LLLFAA LMELAAQ
Sbjct: 167 STWARIIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQ 226

Query: 231 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG 290
           SSKGI + I    EE+  +RKAD D ++ ADGQ AP  K  SP+S TS++ P +WA+LDG
Sbjct: 227 SSKGIIRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDG 286

Query: 291 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFI 350
           LRLI SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFI
Sbjct: 287 LRLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFI 346

Query: 351 LAGQLTLTGTSFLLLGL 367
           LAGQLTLTG    + G+
Sbjct: 347 LAGQLTLTGRILTIAGV 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392938140|gb|AFM94007.1| plasma membrane ATP/ADP transporter TLC1 [Beta vulgaris]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/371 (60%), Positives = 272/371 (73%), Gaps = 29/371 (7%)

Query: 6   IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
           ++ + RL+A  S  V + PHETSALLHS++ FFFILSAYFVVLPLRDEGAISLGLS LPG
Sbjct: 1   MVDRRRLEAILSTIVNVKPHETSALLHSATSFFFILSAYFVVLPLRDEGAISLGLSNLPG 60

Query: 66  LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
           LF+GSL+LTLIAAP+STL+FSLPNLSK +ALVLIHRFFS+SL++FF+LW +S+ G+  KL
Sbjct: 61  LFIGSLLLTLIAAPLSTLLFSLPNLSKGRALVLIHRFFSLSLVLFFILWHTSTNGFTMKL 120

Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
                     AV++    D     D  +   S  W DH W+Y+ VRMG FLW+ALLNLIT
Sbjct: 121 ----------AVAAPLVHDQNFNSDHSNVLQSG-WDDHSWYYIFVRMGLFLWIALLNLIT 169

Query: 186 ISSTWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELA 228
           ISSTWARVIDVM+SE                 LFGSLFAAGMA+LG +LLL AA LMELA
Sbjct: 170 ISSTWARVIDVMNSESGSRLFGFIGAGATLGQLFGSLFAAGMAWLGSFLLLVAAFLMELA 229

Query: 229 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 288
           AQSSKGI ++ P   EE  P+ K D D  SG +  T   A   SP+ +++  KP LW + 
Sbjct: 230 AQSSKGISQDAPHLSEEDTPMIKLD-DQESGVNRNTRSTANGSSPKIASTPAKPQLWVMF 288

Query: 289 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 348
           DGL LI +S+YL+ VSLFLWLSAVVSSFFYFQKV++IA+T SS+ GRR+L AEINSFIA+
Sbjct: 289 DGLWLILASSYLIYVSLFLWLSAVVSSFFYFQKVSIIALTTSSAAGRRKLFAEINSFIAL 348

Query: 349 FILAGQLTLTG 359
           FI +GQ+TLTG
Sbjct: 349 FIFSGQITLTG 359

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567662|ref|NP_196150.2| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003472|gb|AED90855.1| TLC ATP/ADP transporter [Arabidopsis thaliana]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/381 (61%), Positives = 275/381 (72%), Gaps = 37/381 (9%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S          
Sbjct: 63  VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
                  ++ S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query: 188 STWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMDSE                 LFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDSESGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query: 231 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 286
           SSKGI  +I +  EEL PLR  D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query: 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 346
           ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query: 347 AVFILAGQLTLTGTSFLLLGL 367
           AVFIL GQLTLTG    + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176743|dbj|BAB09974.1| unnamed protein product [Arabidopsis thaliana]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/381 (60%), Positives = 274/381 (71%), Gaps = 37/381 (9%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S          
Sbjct: 63  VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
                  ++ S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query: 188 STWARVIDVMD-----------------SELFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMD                  +LFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query: 231 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 286
           SSKGI  +I +  EEL PLR  D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query: 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 346
           ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query: 347 AVFILAGQLTLTGTSFLLLGL 367
           AVFIL GQLTLTG    + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680874|ref|NP_850772.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003473|gb|AED90856.1| TLC ATP/ADP transporter [Arabidopsis thaliana]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/381 (60%), Positives = 274/381 (71%), Gaps = 37/381 (9%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S          
Sbjct: 63  VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
                  ++ S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query: 188 STWARVIDVMD-----------------SELFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMD                  +LFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query: 231 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 286
           SSKGI  +I +  EEL PLR  D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query: 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 346
           ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query: 347 AVFILAGQLTLTGTSFLLLGL 367
           AVFIL GQLTLTG    + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680867|ref|NP_850771.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003471|gb|AED90854.1| TLC ATP/ADP transporter [Arabidopsis thaliana]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/381 (60%), Positives = 274/381 (71%), Gaps = 37/381 (9%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S          
Sbjct: 63  VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
                  ++ S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query: 188 STWARVIDVMD-----------------SELFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
           STWAR+IDVMD                  +LFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query: 231 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 286
           SSKGI  +I +  EEL PLR  D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query: 287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 346
           ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query: 347 AVFILAGQLTLTGTSFLLLGL 367
           AVFIL GQLTLTG    + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806531|ref|XP_002871149.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] gi|297316986|gb|EFH47408.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/371 (62%), Positives = 270/371 (72%), Gaps = 37/371 (9%)

Query: 9   KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFV 68
           + RLDA  S  VT+HPHE  ALLHSSSCFFF+LSAYFVVLPLRDEGAISLGLSKLPGLFV
Sbjct: 4   RIRLDAVISTVVTVHPHEIPALLHSSSCFFFVLSAYFVVLPLRDEGAISLGLSKLPGLFV 63

Query: 69  GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESV 128
           GSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S     SK    
Sbjct: 64  GSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPTESTSK---- 119

Query: 129 SHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188
                 DAV + A    K  +D      +  W +H WFY+SVR+GFFLWVALLNL+ ISS
Sbjct: 120 ------DAVEA-ASSLTKVGID-----GANGWDNHSWFYISVRVGFFLWVALLNLVAISS 167

Query: 189 TWARVIDVMDSE-----------------LFGSLFAAGMAFLGPYLLLFAACLMELAAQS 231
           TWAR+IDVMDSE                 LFGS+FAA  A++GPYLLLFAA LMELAAQ+
Sbjct: 168 TWARIIDVMDSESGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMELAAQA 227

Query: 232 SKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWAI 287
           SKGI  +I +  EEL PLR  D+D  R      T+P   + KV SP+S  S  +P LWAI
Sbjct: 228 SKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTSRPQLWAI 287

Query: 288 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIA 347
            DG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+A
Sbjct: 288 FDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFVA 347

Query: 348 VFILAGQLTLT 358
           VFIL GQLTLT
Sbjct: 348 VFILIGQLTLT 358

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2153489	511	AT5G05310 [Arabidopsis thalian	0.891	0.641	0.580	5.9e-96

TAIR|locus:2153489 AT5G05310 [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 212/365 (58%), Positives = 248/365 (67%)

Query:     8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
             ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct:     3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query:    68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRXXXXXXXXXXXXXXXXXIGYLSKLES 127
             VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHR                 + +L  + S
Sbjct:    63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLV----------LCFLLWMAS 112

Query:   128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
              +   S DAV     E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct:   113 PTESNSKDAV-----EAASGLTNDGANA-ATGWDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query:   188 STWARVIDVMD-----------------SELFGSLFAAGMAFLGPYLLLFAACLMELAAQ 230
             STWAR+IDVMD                  +LFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct:   167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query:   231 SSKGIYKEIXXXXXXXXXXXKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 286
             SSKGI  +I             D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct:   227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query:   287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 346
             ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct:   287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query:   347 AVFIL 351
             AVFIL
Sbjct:   347 AVFIL 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       324   0.00086  116 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  193 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.15u 0.10s 24.25t   Elapsed:  00:00:01
  Total cpu time:  24.15u 0.10s 24.25t   Elapsed:  00:00:01
  Start:  Thu May  9 14:06:35 2013   End:  Thu May  9 14:06:36 2013

GO:0005471 "ATP:ADP antiporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029415001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (503 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	100.0
COG3202	509	ATP/ADP translocase [Energy production and convers	100.0
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	98.09
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.02
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.84
TIGR00893	399	2A0114 d-galactonate transporter.	97.83
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.79
PRK09874	408	drug efflux system protein MdtG; Provisional	97.77
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.75
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.75
PRK09528	420	lacY galactoside permease; Reviewed	97.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.67
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.64
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.6
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.59
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.58
PRK10504	471	putative transporter; Provisional	97.51
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.46
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.28
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.26
PRK10054	395	putative transporter; Provisional	97.25
PRK03545	390	putative arabinose transporter; Provisional	97.24
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.23
PRK11902	402	ampG muropeptide transporter; Reviewed	97.19
PRK11663	434	regulatory protein UhpC; Provisional	97.11
PRK10489	417	enterobactin exporter EntS; Provisional	97.08
TIGR00901	356	2A0125 AmpG-related permease.	97.04
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.02
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.97
TIGR00895	398	2A0115 benzoate transport.	96.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.89
TIGR00891	405	2A0112 putative sialic acid transporter.	96.8
PRK11010	491	ampG muropeptide transporter; Validated	96.76
PRK12307	426	putative sialic acid transporter; Provisional	96.73
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.55
PRK11043	401	putative transporter; Provisional	96.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.33
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.13
PLN00028	476	nitrate transmembrane transporter; Provisional	96.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.06
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.99
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.98
PRK10133	438	L-fucose transporter; Provisional	95.89
TIGR00805	633	oat sodium-independent organic anion transporter.	95.82
PRK12382	392	putative transporter; Provisional	95.81
TIGR00898	505	2A0119 cation transport protein.	95.79
PRK15403	413	multidrug efflux system protein MdtM; Provisional	95.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.63
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	95.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.03
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	94.91
PRK10429	473	melibiose:sodium symporter; Provisional	94.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	94.34
PRK09848	448	glucuronide transporter; Provisional	94.3
PRK10091	382	MFS transport protein AraJ; Provisional	94.28
PRK09669	444	putative symporter YagG; Provisional	94.23
PRK03893	496	putative sialic acid transporter; Provisional	94.04
PRK03699	394	putative transporter; Provisional	93.67
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	93.58
PRK10489	417	enterobactin exporter EntS; Provisional	93.4
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	93.36
PRK03633	381	putative MFS family transporter protein; Provision	92.02
KOG3764	464	consensus Vesicular amine transporter [Intracellul	92.01
PF13347	428	MFS_2: MFS/sugar transport protein	91.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	90.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	90.82
PRK09952	438	shikimate transporter; Provisional	90.61
PRK11462	460	putative transporter; Provisional	90.43
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	89.81
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	89.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	89.44
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	89.39
PRK09705	393	cynX putative cyanate transporter; Provisional	88.62
PRK05122	399	major facilitator superfamily transporter; Provisi	88.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	88.22
PRK03893	496	putative sialic acid transporter; Provisional	87.13
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	87.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	86.99
PRK05122	399	major facilitator superfamily transporter; Provisi	86.97
COG2211	467	MelB Na+/melibiose symporter and related transport	86.75
PRK11902	402	ampG muropeptide transporter; Reviewed	86.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	86.05
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	85.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	85.4
COG2211	467	MelB Na+/melibiose symporter and related transport	85.33
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	83.91
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	82.12
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	80.58

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=100.00  E-value=9.7e-59  Score=475.77  Aligned_cols=296  Identities=15%  Similarity=0.166  Sum_probs=245.9

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccCcCcchhHHHHH-HHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669           22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAI---SLGLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALV   97 (368)
Q Consensus        22 i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v---~~G~e~Lp~Lf~~t-~~~~l~~~ply~~l~~~~r~sr~r~~~   97 (368)
                      |||+|.|++++++++||||+++|++|||+||++++   ++|+|+|||+|+.+ +|++++++|+|+|+++  |+||+|+++
T Consensus         1 ~~~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~--~~~~~~lf~   78 (472)
T TIGR00769         1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN--ILSKEALFY   78 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHhHH
Confidence            69999999999999999999999999999999999   56999999999555 6777777999999999  999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCcchhcccCCCCCCcccccccccccccceeeehh
Q 017669           98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW  177 (368)
Q Consensus        98 ~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~r~W~y~~v~~~FyVW  177 (368)
                      ++|++|+++++    +|.+..  |  |        ++|.+||+...|.+++.+|.+++| ++-+.|+|.|    ++||||
T Consensus        79 ~~~~~F~~~f~----lF~~vl--~--p--------~~~~~~p~~~~~~~~~~~~~~~~~-~i~~~~~W~~----~~FYv~  137 (472)
T TIGR00769        79 TVISPFLGFFA----LFAFVI--Y--P--------LSDLLHPTALADKLLSLLPPGFMG-FIAILRIWSF----ALFYVM  137 (472)
T ss_pred             HHHHHHHHHHH----HHHHHH--h--c--------chhhcCCcHHHHHHHhhcchhhHH-HHHHHhhhhH----HHHHHH
Confidence            99999955554    444442  1  3        567888888888888889988887 3446699998    999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHhhChh----hHHHHHHHHHH--HHhH-------------------H------HHHHHHHHH
Q 017669          178 VALLNLITIS-STWARVIDVMDSE----LFGSLFAAGMA--FLGP-------------------Y------LLLFAACLM  225 (368)
Q Consensus       178 vsVfnL~~iS-lFWs~~~dvf~~~----LfG~i~ag~~a--~lG~-------------------~------LLlvaa~lL  225 (368)
                      ++++|++++| +||++|||+++.|    +||++++|+..  ++|+                   +      |++++++++
T Consensus       138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~  217 (472)
T TIGR00769       138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSG  217 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHH
Confidence            9999999999 9999999999999    88887777663  4432                   2      556666666


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhchhHHHHHH
Q 017669          226 ELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSL  305 (368)
Q Consensus       226 ~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rSpYLl~Ial  305 (368)
                      ++++.|.+++.|+..           +  +|+.. +.+           + .+||++.|++++||+++++|||||++||+
T Consensus       218 ~~~~~~~~~l~~~~~-----------~--~~~~~-~~~-----------~-~~~k~k~k~~~~es~k~i~~S~yL~~ia~  271 (472)
T TIGR00769       218 LAIILLYWWVNRNVL-----------T--DPRSY-NPA-----------L-KEKKVKPKMSTMESLKFLVSSPYILDLAL  271 (472)
T ss_pred             HHHHHHHHHHHhccc-----------C--Ccccc-chh-----------h-ccccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence            666666555544321           1  22222 111           0 12233449999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          306 FLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       306 ~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      ++++|++++|++|++||+++++.+||++||++|||++|+++|++|+++|++. +|++||+|.
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw  332 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGW  332 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence            9999999999999999999999999999999999999999999999999999 999999995

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=100.00  E-value=3.9e-51  Score=416.73  Aligned_cols=316  Identities=18%  Similarity=0.182  Sum_probs=272.9

Q ss_pred             hhhhhhHHHhhhhccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCcCcchhHH-HHHHHHHHHHHHHHHHhh
Q 017669            8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLF-VGSLILTLIAAPVSTLIF   85 (368)
Q Consensus         8 ~~~~~~~~~~~~~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~   85 (368)
                      .+.+-++.-+++||||++|.+|++|+++++|||+++|+++|++||+++++ .|+|++||+| |+.+|++++++++|+|+.
T Consensus         7 ~~~~~~k~~~~~wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~   86 (509)
T COG3202           7 EEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLL   86 (509)
T ss_pred             cccccccchheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHH
Confidence            44566788889999999999999999999999999999999999999996 7999999999 999999999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccC-CCCCcchhcccCCCCCCccccccc
Q 017669           86 SLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSN-AKEDPKAAVDQGSTANSADWGDHG  164 (368)
Q Consensus        86 ~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~w~~r~  164 (368)
                      +  +++|+|+++.++++|    +.||+||+++..    |        .+|.+||+ ...+++++.+|.++++ ++-+.++
T Consensus        87 ~--~lt~~~vF~~~~~~F----~~fF~LFa~Vi~----P--------~~~~~hp~~~~~~~~~~~~p~~l~~-~ili~~~  147 (509)
T COG3202          87 N--ILTREKVFYIILGFF----LGFFALFAFVIY----P--------YKDILHPDPEFSRDLFADLPMFLKW-FILIVGE  147 (509)
T ss_pred             h--hcCHHHHHHHHHHHH----HHHHHHHHHHHh----c--------cccccCCCHHHHHHHHhhCCcccee-eeEeecc
Confidence            9  999999999999999    999999999852    5        78999999 8888999999988777 6667799


Q ss_pred             ccccccceeeehhHHHHHHHHHH-HHHHHHHHhhChh-------hHHHHHHHHHHHHhH---H---------------HH
Q 017669          165 WFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSE-------LFGSLFAAGMAFLGP---Y---------------LL  218 (368)
Q Consensus       165 W~y~~v~~~FyVWvsVfnL~~iS-lFWs~~~dvf~~~-------LfG~i~ag~~a~lG~---~---------------LL  218 (368)
                      |+|    ++||+|..+.+.+++| +||+|+||+++.|       +||.++..++...|.   +               ++
T Consensus       148 Ws~----s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~  223 (509)
T COG3202         148 WSY----SLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLL  223 (509)
T ss_pred             hHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHH
Confidence            999    9999988888888999 9999999999999       777755544433231   0               33


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhch
Q 017669          219 LFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSN  298 (368)
Q Consensus       219 lvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rSp  298 (368)
                      ..-..++.+++.++..++|+++|...       +  +|.....            .+++++++|.|.++.||+++++|||
T Consensus       224 ~~~~~vi~~~~~i~~~l~~~~~r~il-------~--~~~f~~~------------~~~kk~~~k~k~~~~~s~k~i~~Sk  282 (509)
T COG3202         224 QILFIVIVILGIIAILLYRYINRNVL-------T--DPLFYLR------------AKKKKKKKKLKLGLIESFKMILRSK  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-------c--CcchhHH------------HhcccccccccCcHHHHHHHHHhhh
Confidence            33345556666777888899888763       2  2222210            1222456788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          299 YLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       299 YLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      ||++||+.+++|++++|++|.+||+.+++.+|+++++++|||+++.++|+++++.+++.+|+++||.|-
T Consensus       283 yL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         283 YLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999984

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=100.00  E-value=7.9e-51  Score=419.08  Aligned_cols=313  Identities=17%  Similarity=0.243  Sum_probs=263.0

Q ss_pred             hhhhhHHHhhhhccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCcCcchhHH-HHHHHHHHHHHHHHHHhhc
Q 017669            9 KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLF-VGSLILTLIAAPVSTLIFS   86 (368)
Q Consensus         9 ~~~~~~~~~~~~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~~   86 (368)
                      +.+..++-+++||||++|.+|++++.+++||++++|.+||++||++.++ -|+|.+||+| |+++|++++++.+|+|+++
T Consensus         5 ~~~~~~~~~~~~pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n   84 (491)
T PF03219_consen    5 EKEFSKLRSIFWPIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSN   84 (491)
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4466677789999999999999999999999999999999999999994 5999999999 8999999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCcchhcccCCCCCCccccccccc
Q 017669           87 LPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWF  166 (368)
Q Consensus        87 ~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~r~W~  166 (368)
                        +++|+++++.+..+|    ++||++|++..  |  |        ++|.+||+...|.++..+++|++| ++.+.|||+
T Consensus        85 --~~s~~~lFy~~~~~F----~~fF~~f~~vl--y--P--------~~~~lhp~~~~~~~~~~~~~~~~~-~i~~~~~Wt  145 (491)
T PF03219_consen   85 --RLSREKLFYIIIIPF----LGFFALFAFVL--Y--P--------NRDILHPDAFADKLLAILPPGFKG-FIAMFRNWT  145 (491)
T ss_pred             --cCCHHHHHHHHHHHH----HHHHHHHHHHH--h--h--------chhhcCCCHHHHHhhhhccchHHH-HHHHHHHHH
Confidence              999999999999999    99999999974  3  5        778888888777788888888887 556779999


Q ss_pred             ccccceeeehhHHHHHHHHHH-HHHHHHHHhhChh----hHHHHHHHHH---------H-HHhH------------H--H
Q 017669          167 YVSVRMGFFLWVALLNLITIS-STWARVIDVMDSE----LFGSLFAAGM---------A-FLGP------------Y--L  217 (368)
Q Consensus       167 y~~v~~~FyVWvsVfnL~~iS-lFWs~~~dvf~~~----LfG~i~ag~~---------a-~lG~------------~--L  217 (368)
                      |    ++|||+..++.-+++| +||+++||+++.+    .||+++.|+-         . .+..            |  .
T Consensus       146 ~----slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~  221 (491)
T PF03219_consen  146 F----SLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELS  221 (491)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHH
Confidence            9    8999977777666888 8999999999999    4444333332         1 2211            1  2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhHHHHHhhc
Q 017669          218 LLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSS  297 (368)
Q Consensus       218 Llvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~i~rS  297 (368)
                      +...+.++.+++.++..++|+++++..       +  +|+..  +           +.+++||||.|.++.||+++++||
T Consensus       222 l~~l~~~v~~~g~~i~~~~~~~~~~vl-------~--~~~~~--~-----------~~~~~kk~k~k~s~~es~k~l~kS  279 (491)
T PF03219_consen  222 LNSLMGIVLILGIVIILLYRYMNKNVL-------T--DPRFY--P-----------SAKKKKKKKPKMSLKESFKLLLKS  279 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc-------C--ccccc--h-----------hhhcccccCCCccHHHHHHHHHhC
Confidence            222255566788888889999887753       2  11211  0           011235678889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          298 NYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       298 pYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      |||++||+++++|++++|++|++||+++++.|||++|+++|||++++++|++|++.| +++++++|++|.
T Consensus       280 ~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW  348 (491)
T PF03219_consen  280 KYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGW  348 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH
Confidence            999999999999999999999999999999999999999999999999999999999 789999999984

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.09  E-value=0.0038  Score=58.86  Aligned_cols=44  Identities=11%  Similarity=0.175  Sum_probs=35.0

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      .+++-++.....+...+..|+.|++++  |++|||.+.......++
T Consensus        33 ~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~~~~~~~~~~~   76 (365)
T TIGR00900        33 ASVLSLAALAGMLPYVVLSPIAGALAD--RYDRKKVMIGADLIRAV   76 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHH--hhchhHHHHHHHHHHHH
Confidence            345666677778888999999999999  99999988776655433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.02  E-value=0.0052  Score=61.19  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=40.7

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      +.+.+.|+..+.++...+..|+.|+++.  |++|||++.+.-..+++..+
T Consensus        36 s~~~~~~~~~~~~l~~~l~~~~~G~laD--r~grr~vl~~~~~~~~~~~~   83 (393)
T PRK11195         36 PDWSQPLLQMFFVLAYIVLAPFVGAFAD--SFPKGRVMFIANGIKLLGCL   83 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHhhh--ccCCchhhHHHHHHHHHHHH
Confidence            3556888888888999999999999999  99999999888877755443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.84  E-value=0.0073  Score=63.82  Aligned_cols=214  Identities=15%  Similarity=0.131  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhchhhccccCCCCCc
Q 017669           66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDP  145 (368)
Q Consensus        66 Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F~~l~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~  145 (368)
                      ...++.+-.++++|+.|.++.  |++|||++..+...-++..++..++......                         .
T Consensus        50 v~~a~~LP~~Llsl~aG~laD--r~drrrili~~~~~~~~~~~~L~~l~~~~~~-------------------------~  102 (524)
T PF05977_consen   50 VQAASTLPILLLSLFAGALAD--RFDRRRILILSQLLRALVALLLAVLAFFGLL-------------------------S  102 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHHHhCcC-------------------------C
Confidence            345666677889999999999  9999999988887664443333333322210                         0


Q ss_pred             chhcccCCCCCCcccccccccccccceeeehhHHHHHHHHHHHHHHHHHHhhChh-----------------hHHHHHHH
Q 017669          146 KAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSE-----------------LFGSLFAA  208 (368)
Q Consensus       146 ~~~~~~~~~~~~~~w~~r~W~y~~v~~~FyVWvsVfnL~~iSlFWs~~~dvf~~~-----------------LfG~i~ag  208 (368)
                                   .|..         .++=...++.+-+.--..=+.+.|+.+.|                 +.|...+|
T Consensus       103 -------------~~~L---------l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen  103 -------------PWLL---------LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             -------------HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence                         2421         11112444444333334445667787777                 33334444


Q ss_pred             HHH-HHhH-HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccc
Q 017669          209 GMA-FLGP-YLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWA  286 (368)
Q Consensus       209 ~~a-~lG~-~LLlvaa~lL~la~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  286 (368)
                      .+. .+|+ +.+++-++...++..+   +.+++.+.         +    ++.                  .++++...+
T Consensus       161 ~Lva~~G~~~~f~inalsfl~~i~~---l~~~~~~~---------~----~~~------------------~~~e~~~~~  206 (524)
T PF05977_consen  161 ILVAFFGAAAAFLINALSFLISILA---LLRWKPPP---------P----PSS------------------LPRERFFSA  206 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHccccc---------c----ccc------------------cchhhhhhh
Confidence            443 5564 3333333322222222   33332211         0    000                  011245568


Q ss_pred             hHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669          287 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG  366 (368)
Q Consensus       287 ~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G  366 (368)
                      +.+|++++.+||.+..+.+...++++...-++-..--++++.....   ...+|-+....++-+++.-+.+ +++-++++
T Consensus       207 l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~---a~~yGll~a~~gvGai~Gal~~-~~l~~~~~  282 (524)
T PF05977_consen  207 LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGG---ASGYGLLLAAFGVGAILGALLL-PRLRRRLS  282 (524)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHHH-HHhhcccC
Confidence            9999999999999988777666677666555544444555554322   3477888888888888777764 46666543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.83  E-value=0.0077  Score=56.79  Aligned_cols=50  Identities=8%  Similarity=0.119  Sum_probs=38.2

Q ss_pred             hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++|++++  ..++.-++.....+...+..|+.|++++  |++||+.+......+
T Consensus        20 ~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~   69 (399)
T TIGR00893        20 LQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLD--RFGARKTLAVFIVIW   69 (399)
T ss_pred             HHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHH--hcCcceeeHHHHHHH
Confidence            4555544  3455667778888999999999999999  999999886655444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.79  E-value=0.023  Score=56.09  Aligned_cols=79  Identities=10%  Similarity=-0.032  Sum_probs=52.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +.-..+...++-|+...+..++.|.-..+.-+.|  .+++.+...+..+...+..|+.|.+++  |++|||++......+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~   88 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD--RIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHH
Confidence            3333444455555555566666666555443333  456777778888889999999999999  999999877655554


Q ss_pred             HHH
Q 017669          104 SVS  106 (368)
Q Consensus       104 ~~~  106 (368)
                      ++.
T Consensus        89 ~~~   91 (406)
T PRK15402         89 ILT   91 (406)
T ss_pred             HHH
Confidence            333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.77  E-value=0.045  Score=53.30  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc-------chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSK-------LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~-------Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ....+..|+...++.+..|.=..+.-+.|.+.       .-++.....+...+..|+.|++++  |++||+.+.......
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~   94 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD--RKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCcHHHHHHHHHHH
Confidence            34456677777888887776666555544442       134446667788999999999999  999999876554444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.75  E-value=0.0052  Score=58.12  Aligned_cols=53  Identities=15%  Similarity=-0.014  Sum_probs=38.8

Q ss_pred             hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      +.|+++.  ..++.-++.........+..++.|++++  |++||+.+.......++.
T Consensus        21 ~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~   73 (379)
T TIGR00881        21 LVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSD--RSNPRVFLPIGLILCAIV   73 (379)
T ss_pred             HHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHH--hhCCeehhHHHHHHHHHH
Confidence            3444433  3445677777788889999999999999  999999887665555433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.75  E-value=0.005  Score=57.93  Aligned_cols=70  Identities=16%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhhhhhhh-hhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           35 SCFFFILSAYFVVLPLRD-EGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        35 l~fF~il~aYyiLRPvRD-~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      +..|+...+..++-|.-. .+.-+.  ..+++-++.....+...+..|+.|++++  |++||+++......+++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD--RFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCeeeEeehhhhhhhH
Confidence            444555555555555544 333232  4556778888888999999999999999  999999877776666555

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.68  E-value=0.0073  Score=60.07  Aligned_cols=70  Identities=21%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           31 LHSSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        31 l~~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      ..+.+.+|+..++|...-|     ++|.++.  +..++-.+.....+...+..|+.|+++.  |++|||.+.+....++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~D--r~g~r~~~~~~~~~~~   87 (420)
T PRK09528         13 WIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISD--KLGLKKHLLWIISGLL   87 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHH
Confidence            3334455555555554444     3554443  4456677778888999999999999999  9999999876555443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.67  E-value=0.046  Score=52.48  Aligned_cols=64  Identities=16%  Similarity=-0.020  Sum_probs=44.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           38 FFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        38 F~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++...+..+..|.-+.+.-+.|  .++.-++.....+...+..|+.|++.+  |++||+.+......+
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~   80 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD--RYGRRPVLLLGLFIF   80 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHH
Confidence            3334555666665544433333  455677777778889999999999999  999999887655444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.64  E-value=0.026  Score=55.55  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcch
Q 017669           29 ALLHSSSCFFFILSAYFVVLPL----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKA   93 (368)
Q Consensus        29 ~~l~~~l~fF~il~aYyiLRPv----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~   93 (368)
                      +..+..+.+|+..+++.+.-|.    -++.+  .+.+++-++.....+...+..|+.|.++.  |++|+
T Consensus         5 ~~~~~~~~~~~~~~~~g~~~p~l~~~l~~~g--~s~~~iG~~~~~~~l~~~l~~~~~g~l~d--r~g~~   69 (382)
T PRK11128          5 PTRWLALSYFGYFFAYGVFLPFWSVWLKGQG--YTPETIGLLLGAGLVARFLGSLLIAPRVK--DPSQL   69 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhhHHHHHHHh--hhcch
Confidence            4456666788888888888883    23322  24455556566667888899999999999  99984

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.60  E-value=0.019  Score=59.36  Aligned_cols=77  Identities=17%  Similarity=0.097  Sum_probs=67.5

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      .+..++|.|-+..+.+++......-+..|-|....-+..++++++=++.+|..++ ++++.=+.-+++.+++++|.|.
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s-~~v~~E~~~m~~~p~li~rig~  288 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWS-VQVFLEALMMFFSPWLINRIGA  288 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHH-HHHHHHHHHHHHHHHHHHhcCh
Confidence            3678999999999999999999999999999999999999999999999999965 4566667888889999999983

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.59  E-value=0.034  Score=54.77  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           33 SSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        33 ~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      .....||+..++...-|.     .|+.+.  ...+.-.+.....++..+..|+.|++++  |++|||.+......+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~D--r~grr~~~~~~~~~~~~   80 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISD--KLGLKKHLLWIISGLLV   80 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHH
Confidence            334555566666666664     444433  2344566778888999999999999999  99999998776555543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.58  E-value=0.071  Score=52.26  Aligned_cols=76  Identities=9%  Similarity=0.041  Sum_probs=52.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..+.+....+..++-..++++.-|.=+.+.-+.|  .++.-++.....+...+..|+.|++++  |++||+.+......+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD--RVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHH
Confidence            3444555666666767777766565444443333  345566667777888999999999999  999999876655444

>PRK10504 putative transporter; Provisional

Probab=97.51  E-value=0.086  Score=53.07  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc--chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~--Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +-+.+...++.+|+....++++-|.=+.+.-+.|.+.  .-|+.....+...+..|+.|+++.  |++|||++......+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~   85 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD--RVGVRNIFFTAIVLF   85 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHHHHHH
Confidence            4445566677777777777777776555554445544  445556666777889999999999  999999987666555


Q ss_pred             HHHHH
Q 017669          104 SVSLL  108 (368)
Q Consensus       104 ~~~LL  108 (368)
                      ++..+
T Consensus        86 ~~~~~   90 (471)
T PRK10504         86 TLGSL   90 (471)
T ss_pred             HHHHH
Confidence            44433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.49  E-value=0.11  Score=50.75  Aligned_cols=70  Identities=16%  Similarity=-0.034  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhccCcC--cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           32 HSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        32 ~~~l~fF~il~aYyiLRPvRD~l~v~~G~e--~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..+...+.-..+..+.-|.=..+.-+.|.+  +.-++.....+...+..|+.|++++  |++||+.+......+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~   78 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD--RSGRKPVAIPGAALF   78 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH--HhCChHHHHHHHHHH
Confidence            345555555555544444433333333333  3455556666778888999999999  999998776544333

>TIGR00897 2A0118 polyol permease family

Probab=97.46  E-value=0.12  Score=51.22  Aligned_cols=76  Identities=14%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHh----hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           29 ALLHSSSCFFFILSAYF----VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        29 ~~l~~~l~fF~il~aYy----iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      ++....+.-|+...+++    .+-|.-++++  .+.+++.++.+...+...+..|+.|++.+  |++|||.+......++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~~~~~~~~~i~~~~~g~l~d--r~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALG--LSPQQSASAFTLYGIAAAISAWISGVVAE--IIGPLKTMMIGLLLWC   89 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhC--CCHHHhHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHH
Confidence            34445555555555443    4555555443  34567788778888889999999999999  9999999877666665


Q ss_pred             HHHH
Q 017669          105 VSLL  108 (368)
Q Consensus       105 ~~LL  108 (368)
                      +..+
T Consensus        90 ~~~~   93 (402)
T TIGR00897        90 VGHA   93 (402)
T ss_pred             HHHH
Confidence            4433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.31  E-value=0.13  Score=49.60  Aligned_cols=44  Identities=5%  Similarity=-0.013  Sum_probs=34.7

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      +.++..++.....+...+..|+.|++.+  |++||+.+.......+
T Consensus        24 s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~~   67 (377)
T PRK11102         24 SAGSVQMTLSAYILGFAIGQLFYGPMAD--SFGRKPVILGGTLVFA   67 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhchHHh--hcCChHHHHHHHHHHH
Confidence            3456777777777888899999999999  9999998766554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.31  E-value=0.065  Score=53.90  Aligned_cols=44  Identities=7%  Similarity=-0.190  Sum_probs=35.5

Q ss_pred             cCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           58 LGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        58 ~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      .+.++.-++.+.......+..++.|++++  |++||+.+......+
T Consensus        58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~~~~~~~~~~~~  101 (438)
T TIGR00712        58 FSKGELGFALSAISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILS  101 (438)
T ss_pred             CCHhHhHHHHHHHHHHHHHhhhccchhhh--ccCCceehHHHHHHH
Confidence            45666778778888999999999999999  999999776544444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.28  E-value=0.075  Score=53.75  Aligned_cols=46  Identities=9%  Similarity=-0.135  Sum_probs=35.4

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL  107 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L  107 (368)
                      .+++-++.....+...+..|+.|++++  |+.||+++......+++..
T Consensus        62 ~~~~g~~~~~~~i~~~~~~~~~G~l~D--r~g~k~~l~~~~~~~~i~~  107 (452)
T PRK11273         62 RGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVM  107 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhh--ccCCchhHHHHHHHHHHHH
Confidence            345556667778889999999999999  9999998776665554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.26  E-value=0.065  Score=60.51  Aligned_cols=75  Identities=9%  Similarity=-0.036  Sum_probs=46.9

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL  364 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~  364 (368)
                      ...++++.+.++|++....+...+...+...+......++++.+...+   ..+|.+.+..++..++.++. .|++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~---~~~g~~~~~~~~g~~ig~~~-~g~l~~~  287 (1140)
T PRK06814        213 STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDE---NVATLFLAVFSVGVAVGSFL-ASKLSEG  287 (1140)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch---HHHHHHHHHHHHHHHHHHHH-HHHHhCC
Confidence            467899999999999887776666555554444444555555543332   23555556666666655655 4566654

>PRK10054 putative transporter; Provisional

Probab=97.25  E-value=0.15  Score=50.88  Aligned_cols=75  Identities=8%  Similarity=0.014  Sum_probs=49.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhh-hhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           27 TSALLHSSSCFFFILSAYFVVLPLR-DEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        27 ~~~~l~~~l~fF~il~aYyiLRPvR-D~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      -|.+.......||...+++.+-|.= ..+.-+.|  .++.-++......+.++..|+.|++++  |+.||+++......+
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~k~~~~~~~~~~   83 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD--KFDKKRYMLLAITAF   83 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCcchhHHHHHHHH
Confidence            3444455556777777777766532 22221223  344556556667888899999999999  999999876555444

>PRK03545 putative arabinose transporter; Provisional

Probab=97.24  E-value=0.24  Score=48.68  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             HHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           42 SAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        42 ~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      ...++.-|+-+.+.-+.  ..++..++.+.....+.+..++.|++.+  |++|||++......+++.
T Consensus        23 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545         23 TTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS--NVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence            44344444434443332  3455666667777788888999999999  999999987765555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.23  E-value=0.086  Score=59.06  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        67 f~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..+.++..++..|+.|+++.  |++||+++.+.....
T Consensus        53 ~~~~~l~~~l~~~~~G~l~D--r~grk~~l~~~~~~~   87 (1146)
T PRK08633         53 NALFLLPFLLLSSPAGFLAD--KFSKNRVIRIVKLFE   87 (1146)
T ss_pred             HHHHHHHHHHHhhhHhhhcc--cccHHHHHHHHHHHH
Confidence            35556777889999999999  999999887665443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.19  E-value=0.091  Score=52.02  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL  364 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~-d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~  364 (368)
                      +..++++.++|+|++..+.+...++.....+.+........+... +++    -.|.+...+++++.+....+.|++.+|
T Consensus       197 ~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~----~~g~~~~~~~~~~~i~g~~~~g~l~~r  272 (402)
T PRK11902        197 AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAG----EVGIVNKTLGLAATIVGALAGGTLMVR  272 (402)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999998887777777665544433222223333222 332    344455555666556667778999998


Q ss_pred             hc
Q 017669          365 LG  366 (368)
Q Consensus       365 ~G  366 (368)
                      +|
T Consensus       273 ~g  274 (402)
T PRK11902        273 LG  274 (402)
T ss_pred             Hh
Confidence            87

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.11  E-value=0.32  Score=48.98  Aligned_cols=55  Identities=11%  Similarity=-0.086  Sum_probs=38.6

Q ss_pred             hhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           47 VLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        47 LRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      +-++.++++++  .++.-++.....+...+..|+.|++.+  |++||+++......+++
T Consensus        46 ~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         46 MPEMLADLGLS--RSDIGLLATLFYITYGVSKFVSGIVSD--RSNARYFMGIGLIATGI  100 (434)
T ss_pred             hHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhhhhHHHh--hcCCchhHHHHHHHHHH
Confidence            44555555442  234555557777888999999999999  99999987665555433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.08  E-value=0.17  Score=50.20  Aligned_cols=77  Identities=12%  Similarity=-0.011  Sum_probs=47.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhhhh-hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669           24 PHETSALLHSSSCFFFILSAYFVVLPL-RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF  102 (368)
Q Consensus        24 ~~E~~~~l~~~l~fF~il~aYyiLRPv-RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f  102 (368)
                      ..+.+.++......++-.....+.-|. .+++  ..+..+.-++.....+..++.+|+.|+++.  |++|||++......
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d--r~g~~~~l~~~~~~   91 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--TGSTLQVGLSVTLTGGAMFIGLMVGGVLAD--RYDRKKLILLARGT   91 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHhhHHHhh--hcCCceEEEehHHH
Confidence            345555544433333333333333343 2222  234456677778888889999999999999  99999988765544


Q ss_pred             HH
Q 017669          103 FS  104 (368)
Q Consensus       103 F~  104 (368)
                      ++
T Consensus        92 ~~   93 (417)
T PRK10489         92 CG   93 (417)
T ss_pred             HH
Confidence            43

>TIGR00901 2A0125 AmpG-related permease

Probab=97.04  E-value=0.2  Score=48.22  Aligned_cols=77  Identities=16%  Similarity=0.036  Sum_probs=46.1

Q ss_pred             chHhHHHHHhhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017669          286 AILDGLRLIFSSNY---LLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSF  362 (368)
Q Consensus       286 ~~~~g~~~i~rSpY---Ll~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii  362 (368)
                      +.+++++.++++|.   +..+.+...++......++-.....+++..-|++    -.|.+....+++..+.+.++.|++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~----~~g~~~~~~~~~~~~~g~~~~g~l~  269 (356)
T TIGR00901       194 AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKE----EIALVAKINGLLGAILGGLIGGIIM  269 (356)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35678888999885   5444444444444443343333344444222332    3455666666666677888899999


Q ss_pred             HHhc
Q 017669          363 LLLG  366 (368)
Q Consensus       363 ~~~G  366 (368)
                      +|+|
T Consensus       270 ~r~g  273 (356)
T TIGR00901       270 QPLN  273 (356)
T ss_pred             hhhh
Confidence            9987

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.02  E-value=0.33  Score=46.40  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhh-hhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669           33 SSSCFFFILSAYFVVLPLRDE-GAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL  107 (368)
Q Consensus        33 ~~l~fF~il~aYyiLRPvRD~-l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L  107 (368)
                      ..+.+++-.+.++..-|+-.. +.-+.|  .++.-++.....+...+..|+.|++++  |+.||+.+.......++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD--KFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHH
Confidence            444455555555555555442 332333  445667778888999999999999999  9999998877665554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.01  E-value=0.45  Score=48.37  Aligned_cols=55  Identities=7%  Similarity=-0.001  Sum_probs=39.6

Q ss_pred             hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      -++++++++  +..++-++..+-.....+..|+.|+++.  |++||+++.......++.
T Consensus        53 ~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~~~~  107 (467)
T PRK09556         53 NDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYAD--GKNTKQFLPFLLILSAIC  107 (467)
T ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhh--ccCccchHHHHHHHHHHH
Confidence            345555544  2445667667777888899999999999  999999887665554433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.97  E-value=0.48  Score=47.31  Aligned_cols=74  Identities=12%  Similarity=0.006  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhh-hhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           33 SSSCFFFILSAYFVVLPLRDE-GAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        33 ~~l~fF~il~aYyiLRPvRD~-l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      .+.--|+...+++.+-|.=.. +.-+.|  ...+..+.....+...+..|+.|++++  |++||+++.+.....++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d--r~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD--RFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH--HhCchHHHHHHHHHHHHHHH
Confidence            334445555555555555332 222333  333444444445666777899999999  99999998776655544333

>TIGR00895 2A0115 benzoate transport

Probab=96.96  E-value=0.098  Score=49.95  Aligned_cols=76  Identities=14%  Similarity=0.032  Sum_probs=46.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..+..+..++..|+....++..-+.-..+.-+.|  .++..++.....+.+++..++.|++++  |++||+.+.......
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD--RIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH--HhhhHHHHHHHHHHH
Confidence            3344444555555444334433333222222222  345666777777888999999999999  999999876655444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.92  E-value=0.52  Score=46.94  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           34 SSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        34 ~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      ..+.|+....-|..-|.-.++.-+.|.  ++.-++.........+..|+.|++++  |++|||.+......+++..+
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~grr~~~~~~~~~~~~~~~  100 (394)
T PRK10213         26 AFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ--ATDRRYVVILFAVLLTLSCL  100 (394)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHHHH
Confidence            333344444444444443333333333  44566667778888899999999999  99999999888877755443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.89  E-value=0.41  Score=45.22  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++-+++|++++  ..+++-++.........+..|+.|++++  |++||+.+......+
T Consensus        25 ~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d--~~G~r~~~~~~~~~~   78 (377)
T TIGR00890        25 LAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLAD--KFGPRAVAMLGGILY   78 (377)
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHH--HcCccchhHHhHHHH
Confidence            45566666554  3556788888889999999999999999  999999976654443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.80  E-value=0.53  Score=45.28  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 017669           24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR  101 (368)
Q Consensus        24 ~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~  101 (368)
                      +...+.....++.+++--..++++-++-+++.-+.|.  ++.-++.........+..|+.|++++  |++||+.+.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD--RYGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHH
Confidence            4445566666777777777777776666665544444  34556667777899999999999999  9999998776544


Q ss_pred             HH
Q 017669          102 FF  103 (368)
Q Consensus       102 fF  103 (368)
                      .+
T Consensus        86 ~~   87 (405)
T TIGR00891        86 LF   87 (405)
T ss_pred             HH
Confidence            44

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.76  E-value=0.87  Score=47.17  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             HhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 017669          288 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG  366 (368)
Q Consensus       288 ~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~-d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~G  366 (368)
                      .+.++.++++|....+.+...++.....+.+.-....+.+... |+.+    .|.+....+.+..++..++.|++.+|+|
T Consensus       212 ~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~----~g~~~~~~g~i~~iiG~ll~G~L~dr~g  287 (491)
T PRK11010        212 VAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGE----VGLVNKTLGLLATIVGALYGGILMQRLS  287 (491)
T ss_pred             HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677777765555555555555444443333334333222 3332    3444445555566677788999999987

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.73  E-value=0.69  Score=45.63  Aligned_cols=61  Identities=8%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             HHhhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669           43 AYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL  107 (368)
Q Consensus        43 aYyiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L  107 (368)
                      ..+.+..++++.+++  .++..++.....+...+..|+.|++++  |++||+++.+.....++..
T Consensus        37 ~~~~~~~i~~~~~~s--~~~~~~~~~~~~~~~~l~~~~~g~l~d--r~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         37 IFYIMYLIKADLGLT--DMEGAFLATAAFIGRPFGGALFGLLAD--KFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHH
Confidence            345555566666553  344566667777889999999999999  9999999877776664443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.55  E-value=0.91  Score=44.72  Aligned_cols=73  Identities=11%  Similarity=-0.005  Sum_probs=47.5

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      .++.++|+|.+....+...+........+-.....+++ ..-+++...+   . ..+++++-+.+.++.||+.+|+|.
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~---l-~~~~~~~~i~~~~~~~~l~~r~g~  269 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGL---L-WGIGVLAEIIIFAFSNKLFQNCSA  269 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHH---H-HHHHHHHHHHHHHHhHHHHhhCCH
Confidence            46788999988777766666555555544444445555 3333333332   3 335778888889999999999873

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11043 putative transporter; Provisional

Probab=96.39  E-value=1.1  Score=43.95  Aligned_cols=64  Identities=11%  Similarity=-0.013  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhhhhh----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           36 CFFFILSAYFVVLPL----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        36 ~fF~il~aYyiLRPv----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +.++-.++..+.-|.    +|++++  ..+++.++.....+.+.+..++.|++++  |++||+.+......+
T Consensus        14 ~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~   81 (401)
T PRK11043         14 LSMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSD--RYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHh--hcCCcHHHHHHHHHH
Confidence            344444444555554    444433  4556777777778888999999999999  999999876544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.33  E-value=1.2  Score=43.65  Aligned_cols=52  Identities=12%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      -+++++++.  +.++..++.....+..++..++.|++++  |++||+++......+
T Consensus        39 ~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~   90 (406)
T PRK11551         39 PRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLAD--RIGRKRILIVSVALF   90 (406)
T ss_pred             HHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHH
Confidence            345565543  4556778778888899999999999999  999999987655444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.13  E-value=1.7  Score=43.47  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      +...+..|+......++.+.-..+.-+.|  .++.-|+.+...+...+..|+.|++.+  |++||+.+......++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~   78 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK--RFGTRRLFLISTFAFT   78 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH--HhCcHHHHHHHHHHHH
Confidence            33444555555555666655555544433  456788888888999999999999999  9999998766655553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.11  E-value=2  Score=44.12  Aligned_cols=82  Identities=13%  Similarity=0.067  Sum_probs=55.8

Q ss_pred             hccCCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669           20 VTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALV   97 (368)
Q Consensus        20 ~~i~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~   97 (368)
                      ++.+++..+.+......+++....++..-|.-+.+.-+.|.  ++.-++....++.+.+..++.|++++  |+.||+.+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~G~r~~~~  105 (476)
T PLN00028         28 FSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD--LYGPRYGSA  105 (476)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHH
Confidence            44455556777777777777777777666655544433343  33445556667778888999999999  999998876


Q ss_pred             HHHHHH
Q 017669           98 LIHRFF  103 (368)
Q Consensus        98 ~~~~fF  103 (368)
                      .....+
T Consensus       106 ~~~~~~  111 (476)
T PLN00028        106 FLLMLT  111 (476)
T ss_pred             HHHHHH
Confidence            544333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.06  E-value=0.46  Score=46.95  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=41.9

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL  365 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~  365 (368)
                      +..+.++.++++|.+..+.+...++.........-..-..+....++++    .+.+....++..+ +..++.|++.+|+
T Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i-i~~~~~~~l~~r~  284 (437)
T TIGR00792       210 SLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL----FSYMGSIAIVAGL-IGVLLFPRLVKKF  284 (437)
T ss_pred             CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHH----HHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence            5678899999999988777666655554433221111111122233332    2333333344443 4455578999998


Q ss_pred             c
Q 017669          366 G  366 (368)
Q Consensus       366 G  366 (368)
                      |
T Consensus       285 g  285 (437)
T TIGR00792       285 G  285 (437)
T ss_pred             C
Confidence            7

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.99  E-value=1.5  Score=44.04  Aligned_cols=51  Identities=8%  Similarity=0.024  Sum_probs=36.6

Q ss_pred             hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++.|+++.+  .+++-++....++...+..++.|++.+  |++||+++......+
T Consensus        33 ~l~~~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~G~r~~~~~~~~~~   83 (412)
T TIGR02332        33 TMGKDLGLS--ATMFGLAATLFYAAYVICGIPSNIMLA--IIGARRWIAGIMVLW   83 (412)
T ss_pred             hhHhhcCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHH--HhChHHHHHHHHHHH
Confidence            455555432  444555567777888899999999999  999999876555444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00896 CynX cyanate transporter

Probab=95.98  E-value=1.6  Score=42.02  Aligned_cols=53  Identities=9%  Similarity=0.106  Sum_probs=38.9

Q ss_pred             hhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           47 VLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        47 LRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +-+++|+.++  ..++.-++.....+...+..|+.|++++  |++||+.+.+....+
T Consensus        23 lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~   75 (355)
T TIGR00896        23 LPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLAR--RFGEERSVAAGLLLI   75 (355)
T ss_pred             HHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCchHHHHHHHHHH
Confidence            3345555443  3445667778888999999999999999  999999976654333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=95.89  E-value=2.4  Score=43.21  Aligned_cols=83  Identities=11%  Similarity=-0.005  Sum_probs=59.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      -..++...+++||...+...+.-++=.++.-+.  +.++..++-........+..|+.|++.+  |+.||+.+......+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d--r~G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence            334556677777777776665554444333222  3455666667778899999999999999  999999999888888


Q ss_pred             HHHHHHH
Q 017669          104 SVSLLVF  110 (368)
Q Consensus       104 ~~~LL~F  110 (368)
                      ++..+.+
T Consensus       102 ~~~~~l~  108 (438)
T PRK10133        102 ALGAALF  108 (438)
T ss_pred             HHHHHHH
Confidence            7766554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.82  E-value=0.55  Score=50.71  Aligned_cols=78  Identities=6%  Similarity=-0.026  Sum_probs=48.9

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL  365 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~  365 (368)
                      +.+..++.++++|-.+...+...+...+..-+..-....+.+.+.-+.....++   .....+...+++.++.|++++|+
T Consensus       318 ~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l---~~~~~i~~~~vG~~l~G~l~~r~  394 (633)
T TIGR00805       318 DFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFL---IGVVNLPAAGLGYLIGGFIMKKF  394 (633)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH---hhhhhhhHHHHHHhhhhheeeee
Confidence            455678899999988888777666655554444434455555554443333322   23344444567888899999988


Q ss_pred             c
Q 017669          366 G  366 (368)
Q Consensus       366 G  366 (368)
                      +
T Consensus       395 ~  395 (633)
T TIGR00805       395 K  395 (633)
T ss_pred             c
Confidence            7

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12382 putative transporter; Provisional

Probab=95.81  E-value=2.1  Score=41.88  Aligned_cols=74  Identities=7%  Similarity=0.009  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           30 LLHSSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        30 ~l~~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      +...++..|+...+..+.-|     ++|+++++  .+.+-++.........+..|+.|++++  |+.|||++......++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s--~~~~g~~~s~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~~~   92 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFG--NTMVGIAVGIQFLATVLTRGYAGRLAD--QYGAKRSALQGMLACG   92 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCc--HHHHHHHHHHHHHHHHHHhhhhhHHHH--hhcchHHHHHHHHHHH
Confidence            34444455555555566666     35555442  445666667778889999999999999  9999998876655554


Q ss_pred             HHH
Q 017669          105 VSL  107 (368)
Q Consensus       105 ~~L  107 (368)
                      +..
T Consensus        93 ~~~   95 (392)
T PRK12382         93 LAG   95 (392)
T ss_pred             HHH
Confidence            333

>TIGR00898 2A0119 cation transport protein

Probab=95.79  E-value=0.069  Score=54.25  Aligned_cols=54  Identities=13%  Similarity=0.010  Sum_probs=38.5

Q ss_pred             hhhhhhhhhcc-CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           48 LPLRDEGAISL-GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        48 RPvRD~l~v~~-G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..++++..++- ......++-...++..++..++.|+++.  |+.||+++.+.....
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D--r~Grr~~~~~~~~~~  167 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD--RFGRKKVLLLSTLVT  167 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh--hccchHHHHHHHHHH
Confidence            34555555432 2334556567778899999999999999  999999876655444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=95.66  E-value=2.7  Score=42.16  Aligned_cols=45  Identities=11%  Similarity=0.042  Sum_probs=34.5

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      .+..++....-++...+..|+.|++++  |++||+++......+++.
T Consensus        50 ~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         50 VSLAPASVSLYLAGGMALQWLLGPLSD--RIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHH--HcCchHHHHHHHHHHHHH
Confidence            344666666667788889999999999  999999887766555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.63  E-value=2.2  Score=40.82  Aligned_cols=58  Identities=19%  Similarity=0.193  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669           37 FFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL   98 (368)
Q Consensus        37 fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~   98 (368)
                      .|+...++.+..|     ++|+++.  ..+++-++.+...+...+..|+.|++++  |+.|||.+..
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~g~r~~~~~   68 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSD--YQGDRKGLIL   68 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchHHHH
Confidence            4455555555555     3555443  2455677777777888899999999999  9998886543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.26  E-value=6.3  Score=43.82  Aligned_cols=54  Identities=13%  Similarity=-0.009  Sum_probs=41.1

Q ss_pred             hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++-++.++++++  .++.-++-.+.++.+++..++.|+++.  |+.||+.+.+....+
T Consensus       189 ilp~i~~~~gls--~~~~g~l~s~~~lG~iiG~li~G~LsD--R~GRR~~lii~lil~  242 (742)
T TIGR01299       189 VLPSAEKDLCIP--DSGKGMLGLIVYLGMMVGAFFWGGLAD--KLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence            445555555442  345667778888999999999999999  999999987766555

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=95.08  E-value=4.6  Score=41.19  Aligned_cols=51  Identities=10%  Similarity=0.044  Sum_probs=36.6

Q ss_pred             hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++.++++.  ..++.-++.+..+....+..|+.|++++  |++||+.+......+
T Consensus        44 ~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~   94 (455)
T TIGR00892        44 ELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVN--RFGCRPVVIAGGLLA   94 (455)
T ss_pred             HHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHH--HcCchHHHHhhHHHH
Confidence            44444433  3345667777777778889999999999  999999776655444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.03  E-value=3  Score=44.35  Aligned_cols=78  Identities=24%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhh--hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPL--RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPv--RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +++.++.....+++...++..+-|+  ||.+  .+|+...-.+..+..+.+++...+.+++.+  |+++++++......+
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l--~~~a~~yGll~a~~gvGai~Gal~~~~l~~--~~~~~~lv~~~~~~~  294 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVL--GGGASGYGLLLAAFGVGAILGALLLPRLRR--RLSSRRLVLLASLLF  294 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcchhhHHHHHHH
Confidence            4566666566666667788888885  5644  445666666667777999999999999999  999999887666555


Q ss_pred             HHHH
Q 017669          104 SVSL  107 (368)
Q Consensus       104 ~~~L  107 (368)
                      ++.+
T Consensus       295 a~~~  298 (524)
T PF05977_consen  295 ALAL  298 (524)
T ss_pred             HHHH
Confidence            4433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=94.91  E-value=1.5  Score=42.75  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      ..+.-++.....+...+..|+.|++++  |+.||+.+......+++.
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d--~~grr~~~~~~~~~~~~~  114 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSD--RFGRKKSLLIIALLFVIG  114 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhh--hhhhHHHHHHHHHHHHHH
Confidence            456777778888999999999999999  999999987666555433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.41  E-value=5.1  Score=41.01  Aligned_cols=76  Identities=13%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL  365 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~  365 (368)
                      ++++.++.++++|.++.+.+..+++++...+..---.-..+....+++    ..+.+....++..++.+. +.+++.+|+
T Consensus       219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~----~~~~~~~~~~i~~ii~~~-~~~~l~~r~  293 (473)
T PRK10429        219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDAD----LFPYYLSYAGAANLVTLI-LFPRLVKSL  293 (473)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            678899999999999887777666655443321110101111112322    233444444455555554 467999988


Q ss_pred             c
Q 017669          366 G  366 (368)
Q Consensus       366 G  366 (368)
                      |
T Consensus       294 g  294 (473)
T PRK10429        294 S  294 (473)
T ss_pred             C
Confidence            7

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.35  E-value=7.2  Score=40.15  Aligned_cols=77  Identities=10%  Similarity=-0.008  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        31 l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      +...+..|+....-.++-..=.++.-+.|  .+++.|+-++-.+...+..|++|++++  |+.||+.+......|++..+
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D--~~Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD--RIGFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHH
Confidence            33444445554444444443334433333  467899888888899999999999999  99999999888877754443


Q ss_pred             H
Q 017669          109 V  109 (368)
Q Consensus       109 ~  109 (368)
                      .
T Consensus        87 ~   87 (495)
T PRK14995         87 A   87 (495)
T ss_pred             H
Confidence            3

>TIGR00889 2A0110 nucleoside transporter

Probab=94.34  E-value=6.6  Score=39.64  Aligned_cols=38  Identities=8%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcc-hhHHHH
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSK-AKALVL   98 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr-~r~~~~   98 (368)
                      +.+++-++.....+..++.+|+.|++++  |+.| |+++..
T Consensus        36 s~~~iGl~~a~~~~~~~i~~~~~g~l~d--r~g~~r~~~~~   74 (418)
T TIGR00889        36 SGAEIGWVYSSTGIAAILMPILVGIIAD--KWLSAQKVYAV   74 (418)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHH
Confidence            3556777778888999999999999999  9855 545443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09848 glucuronide transporter; Provisional

Probab=94.30  E-value=4  Score=41.09  Aligned_cols=77  Identities=5%  Similarity=-0.046  Sum_probs=43.0

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL  365 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~  365 (368)
                      ++.+.++.++|+|.+....+...++............-...+...++++    ++.+-...+.+..++...+.+++.+|+
T Consensus       216 ~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~r~  291 (448)
T PRK09848        216 SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL----FTVLVLVQNLVGTVASAPLVPGMVARI  291 (448)
T ss_pred             CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677889999999998776655554443322221111122223334333    333333334444555666788999888


Q ss_pred             c
Q 017669          366 G  366 (368)
Q Consensus       366 G  366 (368)
                      |
T Consensus       292 g  292 (448)
T PRK09848        292 G  292 (448)
T ss_pred             C
Confidence            7

>PRK10091 MFS transport protein AraJ; Provisional

Probab=94.28  E-value=5.9  Score=38.88  Aligned_cols=70  Identities=17%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH
Q 017669           36 CFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL  107 (368)
Q Consensus        36 ~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~L  107 (368)
                      ..|+...+.+++-|.=+.+.-+.|  .+++-++........++..|+.|++.+  |++||+.+......+++..
T Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091         11 GTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS--RYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHH
Confidence            334444444555555444443333  345667778888999999999999999  9999999877666664433

>PRK09669 putative symporter YagG; Provisional

Probab=94.23  E-value=2.8  Score=42.25  Aligned_cols=71  Identities=7%  Similarity=0.016  Sum_probs=40.7

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVS-----SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT  360 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vs-----t~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgr  360 (368)
                      +.++.++.++|+|.+..+.+..+++....     ...||.     +....+++.-    +.+ ..++.++.+++..+.++
T Consensus       217 ~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~-----~~~~~~~~~~----~~~-~~~~~i~~ii~~~~~~~  286 (444)
T PRK09669        217 SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV-----NYVLLRPDLA----TLF-LVTGMIAGLFGALLSER  286 (444)
T ss_pred             CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee-----eeecCCHHHH----HHH-HHHHHHHHHHHHHHHHH
Confidence            45778999999998877766554443322     122222     1112232211    222 23445556677888889


Q ss_pred             HHHHhc
Q 017669          361 SFLLLG  366 (368)
Q Consensus       361 ii~~~G  366 (368)
                      +.+|+|
T Consensus       287 l~~r~g  292 (444)
T PRK09669        287 LLGKFD  292 (444)
T ss_pred             HHHHhC
Confidence            999987

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.04  E-value=7.6  Score=39.21  Aligned_cols=76  Identities=12%  Similarity=0.109  Sum_probs=52.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ..+.+....+.+|+....+..+-|+-+.+.-+.|.  ++.-++....++.+.+..|+.|++++  |+.||+.+......+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~   95 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD--RYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHH
Confidence            44455566666666667777666665555444444  34556667777888899999999999  999999876655444

>PRK03699 putative transporter; Provisional

Probab=93.67  E-value=7.9  Score=38.17  Aligned_cols=76  Identities=11%  Similarity=0.004  Sum_probs=49.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +.|.....++.+|+--...+.+-++-+++.-+.|  .++..++.........+..++.|++.+  |++||+.+......+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d--r~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME--IIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence            3445555555555555545555444444443333  345666677777889999999999999  999999876554444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=93.58  E-value=6.8  Score=37.15  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      ++....+..|+.|++++  |+.|||.+......+++
T Consensus        44 ~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~~~   77 (394)
T TIGR00883        44 GFLARPLGAIVFGHFGD--RIGRKKTLVITLLMMGI   77 (394)
T ss_pred             HHHHhhhHHHHhhhhhh--hhhhHHHHHHHHHHHHH
Confidence            33444567899999999  99999998766555533

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=93.40  E-value=5.4  Score=39.52  Aligned_cols=39  Identities=10%  Similarity=0.080  Sum_probs=26.5

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH  100 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~  100 (368)
                      .+..-++.....++.++..++.+++.+  |.++++.+....
T Consensus       258 ~~~~g~~~~~~~~g~~ig~~~~~~l~~--~~~~~~~l~~~~  296 (417)
T PRK10489        258 AAQIGLLYAAVPLGAALGALTSGWLAH--SARPGLLMLLST  296 (417)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhh--ccCcchHHHHHH
Confidence            344555556666778888889999988  766666554444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=93.36  E-value=6.4  Score=39.69  Aligned_cols=39  Identities=3%  Similarity=-0.170  Sum_probs=31.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      +-.+..+.++..++..++.|++..  |++||+.+.......
T Consensus        78 ~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~  116 (465)
T TIGR00894        78 QGLILSSHFYGQIIIQIPVGYLAG--KYVFKWSIGIGMFLS  116 (465)
T ss_pred             hhHHHHHHHHHHHHHHcchHHHHH--HhCcchhhHHHHHHH
Confidence            445667777889999999999999  999999887665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.02  E-value=13  Score=36.39  Aligned_cols=74  Identities=9%  Similarity=0.027  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           30 LLHSSSCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        30 ~l~~~l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      +...++..|+...+..++-|.-..+.-+.  ..++.-++..+..+...+..|+.|++++  |+.||+.+......+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d--r~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK--RIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            34444555555555555555444443333  3456777778888999999999999999  99999988776555543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.01  E-value=0.91  Score=47.41  Aligned_cols=44  Identities=11%  Similarity=0.035  Sum_probs=37.9

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017669          290 GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSL  333 (368)
Q Consensus       290 g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~  333 (368)
                      +++.+++-||.+.++.=+...++...|+|=.-.-...|++..+.
T Consensus       262 ~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~  305 (464)
T KOG3764|consen  262 PMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPG  305 (464)
T ss_pred             cHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCC
Confidence            36889999999999999999999999999888887777765443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.94  E-value=0.75  Score=46.10  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=41.5

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL  365 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~  365 (368)
                      +.++.++.++|+|++..+.+...+.....++.---..=..+....+++    ..+.+..+..+.++ +-..+.+++.+|+
T Consensus       213 ~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~----~~~~~~~~~~~~~~-v~~~~~~~l~~r~  287 (428)
T PF13347_consen  213 SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG----LISIFMLIFFVASI-VGSPLWGRLSKRF  287 (428)
T ss_pred             ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch----hhHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence            567788999999998866666555433333211111112222233332    23333334444444 4555568999998


Q ss_pred             c
Q 017669          366 G  366 (368)
Q Consensus       366 G  366 (368)
                      |
T Consensus       288 g  288 (428)
T PF13347_consen  288 G  288 (428)
T ss_pred             c
Confidence            8

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=90.91  E-value=10  Score=37.11  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=28.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669           61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH  100 (368)
Q Consensus        61 e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~  100 (368)
                      ++.-.+.....+.+++..++.+++.+  |+.|++.+...+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~  292 (406)
T PRK11551        255 SQAGLVQIAFNIGGALGSLLIGALMD--RLRPRRVVLLIY  292 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHH
Confidence            34445555566788899999999999  999998876533

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=90.82  E-value=13  Score=34.30  Aligned_cols=68  Identities=13%  Similarity=0.052  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcc--CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           35 SCFFFILSAYFVVLPLRDEGAISL--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        35 l~fF~il~aYyiLRPvRD~l~v~~--G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      +..++...++++..|.-....-+.  +.++.-++.........+..|+.|++++  |++||+.+........
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~g~r~~~~~~~~~~~   75 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD--RFGRRRVLLLGLLLFA   75 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCCchhhHHHHHHHH
Confidence            344555566666666655554433  4455667677778889999999999999  9999997655554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=90.61  E-value=11  Score=38.01  Aligned_cols=27  Identities=7%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669           71 LILTLIAAPVSTLIFSLPNLSKAKALVLI   99 (368)
Q Consensus        71 ~~~~l~~~ply~~l~~~~r~sr~r~~~~~   99 (368)
                      ..++++..|+.|++++  |++|+|.+...
T Consensus       296 g~~~~i~~~~~g~l~D--r~grr~~~~~~  322 (438)
T PRK09952        296 GGLSCLTIPCFAWLAD--RFGRRRVYITG  322 (438)
T ss_pred             HHHHHHHHHHHHHHHH--HhCchHHHHHH
Confidence            3556778899999999  99999886544

>PRK11462 putative transporter; Provisional

Probab=90.43  E-value=23  Score=36.36  Aligned_cols=71  Identities=13%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVV-----SSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT  360 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~v-----st~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgr  360 (368)
                      +.++.++.++++|+++.++...+++.+.     +...||-. ..    ..+++...    .+.....+.++ +-..+.++
T Consensus       216 ~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~-y~----~g~~~~~~----~~l~~~~i~~i-ig~~l~~~  285 (460)
T PRK11462        216 SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT-WI----LGTPEVFV----AFLTTYCVGNL-IGSALAKP  285 (460)
T ss_pred             CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hh----cCChHHHH----HHHHHHHHHHH-HHHHHHHH
Confidence            4677899999999998776554443332     23334332 11    23333222    22223333333 23456778


Q ss_pred             HHHHhc
Q 017669          361 SFLLLG  366 (368)
Q Consensus       361 ii~~~G  366 (368)
                      +.+|+|
T Consensus       286 l~~r~g  291 (460)
T PRK11462        286 LTDWKC  291 (460)
T ss_pred             HHHHhC
Confidence            887765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=89.81  E-value=7.3  Score=36.95  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh-----hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669           30 LLHSSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI   99 (368)
Q Consensus        30 ~l~~~l~fF~il~aYyiLRPv-----RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~   99 (368)
                      ++....+.++....++..-+.     +|..+.  +.++..++.....+..++..++.+++++  |++||+.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~  291 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSD--RIGRRPVLIIF  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHH
Confidence            444444555544555443322     233322  2233444455556778889999999999  99999976544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=89.51  E-value=24  Score=35.18  Aligned_cols=54  Identities=19%  Similarity=0.017  Sum_probs=39.6

Q ss_pred             hhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           46 VVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        46 iLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++-+++++.+++  .+++-++-...+....+..++.|++++  |+.||+++......+
T Consensus        13 ~lp~i~~~~~~s--~~~~g~~~s~~~~g~~i~~~~~G~l~D--r~grr~~~~~~~~~~   66 (368)
T TIGR00903        13 VLSLVAEDIDVS--KEELGLLAITYPAAFLALTIPSGLLLD--RAFKRWFLFGSLATF   66 (368)
T ss_pred             hHHHHHHHhCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHHH
Confidence            556677777664  345667767767888888999999999  999988765443333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=89.44  E-value=17  Score=36.54  Aligned_cols=34  Identities=9%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017669           63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL   98 (368)
Q Consensus        63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~   98 (368)
                      ..........+..+..++.|++++  |+.||+.+.+
T Consensus       281 ~~~~~~i~~~~~~i~~~~~G~l~D--r~grr~~~~~  314 (432)
T PRK10406        281 ASGIMTAALFVFMLIQPLIGALSD--KIGRRTSMLC  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHH
Confidence            334444445666777899999999  9999987643

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=89.39  E-value=29  Score=35.98  Aligned_cols=88  Identities=26%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCcCc--chhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 017669           23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH  100 (368)
Q Consensus        23 ~~~E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G~e~--Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~  100 (368)
                      ++.....++...++-|++-+.=++.=++=.+++=+.|+++  -=++-+.......+..|+-+.+.+  |++|||++-...
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~--r~~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG--RLERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHH
Confidence            4556678899999999999999988777777776665554  335557777889999999999999  999999999999


Q ss_pred             HHHHHHHHHHHH
Q 017669          101 RFFSVSLLVFFL  112 (368)
Q Consensus       101 ~fF~~~LL~F~~  112 (368)
                      ..|+++=++-++
T Consensus        86 ~lFi~~n~l~al   97 (394)
T COG2814          86 ALFIVSNLLSAL   97 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            888776554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=88.62  E-value=27  Score=34.60  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669           48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF  110 (368)
Q Consensus        48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F  110 (368)
                      -++++++.+  +.++.-++.+.......+..|+.|++.+  |++||+++......+++..+..
T Consensus        33 p~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~d--r~G~r~~l~~~~~l~~~~~~~~   91 (393)
T PRK09705         33 PQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQ--HVSERRSVAISLLLIAVGALMR   91 (393)
T ss_pred             HHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHH--HhCchHHHHHHHHHHHHHHHHH
Confidence            344444433  3445666667778889999999999999  9999999999888886666544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=88.50  E-value=26  Score=34.24  Aligned_cols=44  Identities=7%  Similarity=-0.128  Sum_probs=30.2

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      |.++..+.........++..++.+++.+  |++|+|.+.......+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~~  290 (399)
T PRK05122        247 GWDGAALALTLFGVAFVGARLLFGNLIN--RLGGLRVAIVSLLVEI  290 (399)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHH
Confidence            3344444445555667778899999999  9999987765555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=88.22  E-value=14  Score=37.63  Aligned_cols=28  Identities=18%  Similarity=0.061  Sum_probs=19.5

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhc
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFS   86 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~   86 (368)
                      +.++.-.+.....+..++..|+-+++..
T Consensus       274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d  301 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFARPSCGLIAG  301 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445555566777888899999997

>PRK03893 putative sialic acid transporter; Provisional

Probab=87.13  E-value=18  Score=36.48  Aligned_cols=39  Identities=15%  Similarity=0.024  Sum_probs=30.8

Q ss_pred             CcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 017669           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI   99 (368)
Q Consensus        59 G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~   99 (368)
                      +.++..++......++++..++.+|+.+  |++|++.....
T Consensus       309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~d--r~g~~~~~~~~  347 (496)
T PRK03893        309 DPHTVANVLFFSGFGAAVGCCVGGFLGD--WLGTRKAYVCS  347 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHH
Confidence            3445667777777888899999999999  99999876544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=87.01  E-value=12  Score=29.59  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH
Q 017669           70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (368)
Q Consensus        70 t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~  104 (368)
                      ..+.+++..|+.+++.+  |++||+.+.......+
T Consensus         7 ~~~~~~~~~~~~g~~~d--~~g~~~~~~~~~~~~~   39 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTD--RFGRKPVLLVGLFIFV   39 (141)
T ss_pred             ehhHHHHHHhhHHHHHh--hcchhHHHHHHHHHHH
Confidence            34677888999999999  9999998766555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=86.99  E-value=37  Score=34.30  Aligned_cols=79  Identities=11%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 017669           29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS  106 (368)
Q Consensus        29 ~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~  106 (368)
                      ++....+.||+.-+.+.+.-|+=..+--+.|  ..+.-++....+...++.+|+.+++.+  |++||+.+..-...+++.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~--r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK--KLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHH
Confidence            3455667788777777666555554433333  334556667888999999999999999  999999987777666555


Q ss_pred             HHH
Q 017669          107 LLV  109 (368)
Q Consensus       107 LL~  109 (368)
                      .+.
T Consensus        82 ~~l   84 (410)
T TIGR00885        82 AFL   84 (410)
T ss_pred             HHH
Confidence            443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=86.97  E-value=32  Score=33.60  Aligned_cols=74  Identities=14%  Similarity=0.015  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhh-----hhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 017669           28 SALLHSSSCFFFILSAYFVVLPLR-----DEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF  102 (368)
Q Consensus        28 ~~~l~~~l~fF~il~aYyiLRPvR-----D~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~f  102 (368)
                      +.+....+..|.-..++.+..|+=     |+.+.  ..+++-++.........+..|+.|++++  |+.|||++......
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~   90 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYAD--TLGPKKAVVFGLCG   90 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHh--ccCCcchHHHHHHH
Confidence            445555666666666666665543     33332  3555677778888899999999999999  99999998776655


Q ss_pred             HHH
Q 017669          103 FSV  105 (368)
Q Consensus       103 F~~  105 (368)
                      +++
T Consensus        91 ~~~   93 (399)
T PRK05122         91 CAL   93 (399)
T ss_pred             HHH
Confidence            533

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=86.75  E-value=11  Score=40.00  Aligned_cols=53  Identities=13%  Similarity=0.041  Sum_probs=38.5

Q ss_pred             hhhhhhhh------ccCcCcchhHH-HHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           49 PLRDEGAI------SLGLSKLPGLF-VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        49 PvRD~l~v------~~G~e~Lp~Lf-~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      .+|.+..+      =++.|..++.. .+....+++..+++.++++  |+.|++++.+.....
T Consensus       253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~--~~gkk~~~~~~~~~~  312 (467)
T COG2211         253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK--KFGKKKLFLIGLLLL  312 (467)
T ss_pred             HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhchHHHHHHHHHHH
Confidence            34555544      23677788766 6666777777999999999  999999987764333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=86.25  E-value=25  Score=34.71  Aligned_cols=42  Identities=14%  Similarity=0.127  Sum_probs=28.7

Q ss_pred             cCcchhHHHH-HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           60 LSKLPGLFVG-SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        60 ~e~Lp~Lf~~-t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      .++.-++... ....+++..++.+++.+  |++|+|.+.......
T Consensus       244 ~~~~g~~~~~~~~~~~i~g~~~~g~l~~--r~g~~~~l~~~~~~~  286 (402)
T PRK11902        244 AGEVGIVNKTLGLAATIVGALAGGTLMV--RLGLYRSLMLFGVLQ  286 (402)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence            4445555433 34567888999999999  999998765444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=86.05  E-value=50  Score=34.91  Aligned_cols=51  Identities=10%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             hhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC----CcchhHHHHHHHHH
Q 017669           49 PLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN----LSKAKALVLIHRFF  103 (368)
Q Consensus        49 PvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r----~sr~r~~~~~~~fF  103 (368)
                      |.=++++++  ......++...-+..++..|+.|+++.  |    +.|||.+.+.-...
T Consensus        29 ~yl~~lg~~--~~~~~~i~~~~~l~~~i~~Pi~G~lSD--r~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301        29 PYVQELGIP--HAWASIIWLCGPLSGLLVQPLVGYLSD--RCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHHHHHHHhHeeehhc--CCCCCCCChHHHHHHHHHH
Confidence            344444442  245667777778999999999999998  6    99999886543333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=85.95  E-value=44  Score=34.17  Aligned_cols=73  Identities=12%  Similarity=0.050  Sum_probs=43.6

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q 017669          291 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL  367 (368)
Q Consensus       291 ~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~~Gv  367 (368)
                      ...++|+|..+...+...+.+......|-=-.-.+++.-..+.+..   | .-..+++++=+.-++..+|+++|+|.
T Consensus       200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g-~~~~l~~~aEi~~f~~~~~~~~r~g~  272 (400)
T PF03825_consen  200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI---G-ILWALGVVAEIPFFFFSGRFLKRFGI  272 (400)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH---H-HHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            4579999998876666666555555443333334555542122211   1 12235566666777889999999984

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=85.40  E-value=2.9  Score=39.20  Aligned_cols=71  Identities=24%  Similarity=0.342  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh--hhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           30 LLHSSSCFFFILSAYFVVLPL--RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        30 ~l~~~l~fF~il~aYyiLRPv--RD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      .+..+++.++....+...-|.  +|..+.+ |..+.-+++......+.+..++.+++++  |+++++.........
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~  283 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFS-GPSQAGLLFSIFGIVGIIGSLLAGRLSD--RFGRRRRLLIAILLL  283 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHH
Confidence            344444444444455555565  7777766 5566666666667777888999999999  999887776666555

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=85.33  E-value=55  Score=34.77  Aligned_cols=76  Identities=22%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             chHhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017669          286 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTV-SSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL  364 (368)
Q Consensus       286 ~~~~g~~~i~rSpYLl~Ial~v~l~~~vst~lyf~~~~~v~~~~-~d~~~rt~ffa~i~~~v~v~tl~~QlflTgrii~~  364 (368)
                      ...+.+..++++|=++.++++.+++....++     +.-+--.| ..--.+...+..+...+...+.++...++.++.+|
T Consensus       224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i-----~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~  298 (467)
T COG2211         224 KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNI-----RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK  298 (467)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHHHHHHH-----HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4566788899999999888865554443221     22222222 23333344455555566666777777888899999


Q ss_pred             hc
Q 017669          365 LG  366 (368)
Q Consensus       365 ~G  366 (368)
                      +|
T Consensus       299 ~g  300 (467)
T COG2211         299 FG  300 (467)
T ss_pred             hc
Confidence            87

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=83.91  E-value=15  Score=41.02  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        69 ~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ...++.++..++.++++.  |++|++.+.......
T Consensus       603 l~~l~~i~G~il~g~L~D--r~GRr~~l~~~~~ls  635 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMD--KIGRLRMLAGSMVLS  635 (742)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence            334777888999999999  999999975544333

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=82.12  E-value=58  Score=34.25  Aligned_cols=39  Identities=13%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCCCCcch--hHHHHHHHHH
Q 017669           63 LPGLFVGSLILTLIAAPVSTLIFSLPNLSKA--KALVLIHRFF  103 (368)
Q Consensus        63 Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~--r~~~~~~~fF  103 (368)
                      +=.+...+-+.+++.+.+++++.+  |++-+  +.+.......
T Consensus       319 l~~~~l~~~i~a~~Ga~~~g~l~~--r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  319 LIVFGLVVQIVAIIGALLFGWLQD--RFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHH
Confidence            334446666899999999999999  99888  6655544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=80.58  E-value=31  Score=33.46  Aligned_cols=37  Identities=5%  Similarity=-0.030  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        65 ~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ++......+.++..++.+++.+  |++||+.+.......
T Consensus       323 ~~~~~~~~~~~~~~~~~g~l~d--~~~~~~~~~~~~~~~  359 (481)
T TIGR00879       323 LVSIIVGAVNFAFTFVAIFLVD--RFGRRPLLLIGAAGM  359 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence            3334555677888999999999  999999876654444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.26
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.2
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.39
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.21
2xut_A	524	Proton/peptide symporter family protein; transport	88.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	85.01

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.26  E-value=0.0011  Score=63.04  Aligned_cols=83  Identities=11%  Similarity=-0.005  Sum_probs=58.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC--cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        26 E~~~~l~~~l~fF~il~aYyiLRPvRD~l~v~~G--~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      .....+...+.+|+....+.+.-|+-..+.-+.|  .+++-++.....+...+..|+.|++.+  |++||+.+.+....+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHH
Confidence            3445566666777777666666665444433333  445667777778889999999999999  999999988877777


Q ss_pred             HHHHHHH
Q 017669          104 SVSLLVF  110 (368)
Q Consensus       104 ~~~LL~F  110 (368)
                      ++..+++
T Consensus       102 ~~~~~~~  108 (438)
T 3o7q_A          102 ALGAALF  108 (438)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.85  E-value=0.0022  Score=60.94  Aligned_cols=58  Identities=12%  Similarity=-0.017  Sum_probs=44.2

Q ss_pred             hhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669           48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF  110 (368)
Q Consensus        48 RPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F  110 (368)
                      -++.+++   .+.+++-++.....+...+..|+.|++++  |++||+++.+....+++..+++
T Consensus        52 ~~~~~~~---~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~~~  109 (451)
T 1pw4_A           52 PYLVEQG---FSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFM  109 (451)
T ss_dssp             HHTTSST---TCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh---ccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHHHHH
Confidence            3444544   45667888888888999999999999999  9999998877776665444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.20  E-value=0.0053  Score=57.33  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhccCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           33 SSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        33 ~~l~fF~il~aYyiLRPvRD~l~v~~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      ..+..|+...++.+.-|.-..+.-+.|.  ++.-++.....+...+..|+.|++++  |++||+.+.......++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHH
Confidence            3444455555555555655544444343  44667778888899999999999999  99999998877666644433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.39  E-value=0.44  Score=45.66  Aligned_cols=69  Identities=25%  Similarity=0.269  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhhhh-----hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 017669           33 SSSCFFFILSAYFVVLP-----LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV  105 (368)
Q Consensus        33 ~~l~fF~il~aYyiLRP-----vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~  105 (368)
                      .....|+..+++...-|     +.|+++.  ..++.-++.....+.+.+..|+.|+++.  |+.||+.+.+....+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHH
Confidence            33444444444444333     3444433  3456777778888999999999999999  99999998776665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.21  E-value=0.22  Score=48.13  Aligned_cols=73  Identities=4%  Similarity=-0.010  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh-----hhh-----hhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHH
Q 017669           29 ALLHSSSCFFFILSAYFVVLPL-----RDE-----GAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALV   97 (368)
Q Consensus        29 ~~l~~~l~fF~il~aYyiLRPv-----RD~-----l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r-~sr~r~~~   97 (368)
                      .........|+..++||...+.     .+.     ++  .+.++.-++.....+...+..|+.|++++  | ++||+.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~   89 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLH--ITRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVF   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHH
Confidence            3444445555555555544332     222     22  23445667777788899999999999999  9 89999987


Q ss_pred             HHHHHHHH
Q 017669           98 LIHRFFSV  105 (368)
Q Consensus        98 ~~~~fF~~  105 (368)
                      .....+++
T Consensus        90 ~~~~~~~~   97 (491)
T 4aps_A           90 WGGVLIML   97 (491)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76655533

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=88.97  E-value=6.6  Score=38.00  Aligned_cols=72  Identities=8%  Similarity=0.014  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhh-----hhhhhhc----cCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCC-cchhHHHHHH
Q 017669           31 LHSSSCFFFILSAYFVVLPL-----RDEGAIS----LGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVLIH  100 (368)
Q Consensus        31 l~~~l~fF~il~aYyiLRPv-----RD~l~v~----~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~-sr~r~~~~~~  100 (368)
                      ....+..|+...+||...+.     .++++-.    ...++.-++.....+.+.+..|+.|++++  |+ +||+.+....
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~~~   92 (524)
T 2xut_A           15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILWLS   92 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHH
Confidence            33445555555555544433     3333300    23455677777778889999999999999  99 9999876655


Q ss_pred             HHHH
Q 017669          101 RFFS  104 (368)
Q Consensus       101 ~fF~  104 (368)
                      ..++
T Consensus        93 ~~~~   96 (524)
T 2xut_A           93 LIYC   96 (524)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=85.01  E-value=7.4  Score=36.38  Aligned_cols=70  Identities=7%  Similarity=-0.047  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhc-cCc--CcchhHHHHHHHHHHHHHHHHHHhhcCCCC--cchhHHHHHH
Q 017669           29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIH  100 (368)
Q Consensus        29 ~~l~~~l~fF~il~aYyiLRPvRD~l~v~-~G~--e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~--sr~r~~~~~~  100 (368)
                      .+....+..|+..+.++.+-..=-....+ .|.  ++.-++.....++.++..++.+++.+  |+  +|++.+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~  327 (451)
T 1pw4_A          253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFF  327 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHH
Confidence            34444444555555444433322222222 233  33445556666788899999999999  98  8887765444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.98
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.64
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	86.5
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	82.58

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=0.00068  Score=61.53  Aligned_cols=60  Identities=12%  Similarity=-0.029  Sum_probs=43.7

Q ss_pred             hhhhhhhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH
Q 017669           45 FVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL  108 (368)
Q Consensus        45 yiLRPvRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL  108 (368)
                      .++.|.-.+.++  ..+++-++.....+...+..|+.|+++.  |++||+++.......++..+
T Consensus        45 ~~~~p~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~~~~~~~~  104 (447)
T d1pw4a_          45 ALAMPYLVEQGF--SRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVML  104 (447)
T ss_dssp             HHHHHHTTSSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHh
Confidence            344454444432  4567788888888889999999999999  99999998776666544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.0044  Score=54.00  Aligned_cols=57  Identities=25%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             hhhhhhhccCcCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 017669           50 LRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF  110 (368)
Q Consensus        50 vRD~l~v~~G~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF~~~LL~F  110 (368)
                      ++|+.++  ...++-++.....+...+..|+.|+++.  |++|||.+.+....+++..+.+
T Consensus        34 l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~D--r~grr~~l~~~~~~~~~~~~~~   90 (417)
T d1pv7a_          34 LHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHH--HHTTCTHHHHHHHHHHHTHHHH
T ss_pred             HHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHH
Confidence            4676654  3445677778888999999999999999  9999999877666554444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=4.8  Score=33.72  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=29.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 017669           62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF  103 (368)
Q Consensus        62 ~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~~~~~fF  103 (368)
                      ...........+..+..++.+++.+  |.+|++.+.......
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~--r~~~~~~~~~~~~~~  299 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIIN--RIGGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHH--HHCHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhc--ccccccchhhhHHHH
Confidence            3444456666788889999999999  999999876555444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=82.58  E-value=9.1  Score=33.06  Aligned_cols=36  Identities=6%  Similarity=-0.070  Sum_probs=26.1

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017669           60 LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALV   97 (368)
Q Consensus        60 ~e~Lp~Lf~~t~~~~l~~~ply~~l~~~~r~sr~r~~~   97 (368)
                      .++..+.........++..++.+++.+  |..|++...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~  319 (447)
T d1pw4a_         284 LDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGA  319 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHH
T ss_pred             cchhhhhhhcchhhhhhhhhhhhhhhh--hcccccccc
Confidence            334455556667788889999999999  888765443