Citrus Sinensis ID: 017694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSSPKQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHcccccccccHHHHHHHccccccccccccEEEEccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccHHHHccHHHHHccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcccccHHHHHcHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mnpyymikeeqpggipsesgaDEAAVMTMMMaapqpmeglhdtgpppfltktyemvddpntnevvswsrggvsfvvwdphafstsllprhfkhsnfSSFVRQLNTygfrkidpdrwefsnegfLRGERHLLKNIkrrkapsqplpppqalgpcvelgrfgldgeFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKkrrrpidqgpigagvagssdfgegmssvkaepleygdygfeMSELEALALEMQGygrtrseqegpqeleppesgarelDEGFWEELLNERFegeldmpgsevgddedVTVLIDRfgylgsspkq
Flexible Loop (DISEMBL)
MNPYYMIKeeqpggipsESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKrrkapsqplpppqalgpCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEamtkkrrrpidqgpigaGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYGRTrseqegpqeleppesgaRELDEGFWEELLNERFEgeldmpgsevgddedvTVLIDRfgylgsspkq
Low Complexity Region (SEG)
MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKapsqplpppqalgpCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSelealaleMQGYGRTRseqegpqeleppesgARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSSPKQ
Disordered region (IsUnstruct)
**************************************************KTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLL******************LGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQ*****RAYL************************************************************************************YGDYGFE****************************************FWEELL*******************DVTVLIDRFGYL******
Disordered Region (DISOPRED)
************************************************LTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLL***********************************************************AYLQAMELRLEGTEKKQQQMMSFLA**************************************************************************************************************WEELL**********************VLIDRFG*LG*****
Disordered Region (DISEMBL)
MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGY********************RELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSSPKQ
Disordered Region (DISPRO)
*NPYYMIKEEQP******************************TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRR**********************GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKEL*************************************************ELE*L***MQ***********************ELDEGFWEELLNERFEG***M***EVGDDEDVTVLIDRFGYL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGExxxxxxxxxxxxxxxxxxxxxQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQxxxxxxxxxxxxxxxxxxxxxPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSSPKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9LUH8	406	Heat stress transcription	yes	no	0.959	0.866	0.516	1e-104
Q6VBB2	372	Heat stress transcription	yes	no	0.934	0.922	0.554	1e-101
Q6F388	357	Heat stress transcription	no	no	0.882	0.907	0.553	5e-93
Q8H7Y6	359	Heat stress transcription	no	no	0.948	0.969	0.510	2e-92
Q338B0	358	Heat stress transcription	no	no	0.871	0.893	0.556	5e-91
Q9SV12	272	Heat stress transcription	no	no	0.664	0.897	0.561	4e-83
O80982	345	Heat stress transcription	no	no	0.852	0.907	0.482	2e-77
Q84MN7	376	Heat stress transcription	no	no	0.602	0.587	0.594	1e-75
Q9M1V5	282	Heat stress transcription	no	no	0.678	0.882	0.526	3e-75
P41152	351	Heat shock factor protein	N/A	no	0.773	0.809	0.485	1e-74

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/414 (51%), Positives = 268/414 (64%), Gaps = 62/414 (14%)

Query: 1   MNPYY-MIKEEQPGGIPSESGAD------------EAAVMT-MMMAAPQPMEGLHDTGPP 46
           M+P +  IKEE P G                    EAA+     ++ PQP+EGLH++GPP
Sbjct: 1   MDPSFRFIKEEFPAGFSDSPSPPSSSSYLYSSSMAEAAINDPTTLSYPQPLEGLHESGPP 60

Query: 47  PFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTY 106
           PFLTKTY++V+D  TN VVSWS+   SF+VWDP AFS +LLPR FKH+NFSSFVRQLNTY
Sbjct: 61  PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTY 120

Query: 107 GFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGP--------CVELGR 158
           GFRK++PDRWEF+NEGFLRG++HLLKNI+RRK  +      Q            C+E+GR
Sbjct: 121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGR 180

Query: 159 FGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218
           +GLDGE + L RDKQ LMMELV+LRQQQQ+T+ YL  +E +L+ TE KQ+QMMSFLARAM
Sbjct: 181 YGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAM 240

Query: 219 QNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGP-----------IGAGVAGSSDFGEG 267
           QNP F+QQLV+QKEKRKE+EEA++KKR+RPIDQG             G  VA SS    G
Sbjct: 241 QNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDESGYGNDVAASSSALIG 300

Query: 268 MSSVKAEPLEYGDYG-FEMSELEALALEMQGYGRTRSEQE---------GPQELEPPESG 317
           MS    +   YG+   FEMSEL+ LA+ +QG G   S +E           +E+E  + G
Sbjct: 301 MS----QEYTYGNMSEFEMSELDKLAMHIQGLGDNSSAREEVLNVEKGNDEEEVEDQQQG 356

Query: 318 ARELD-----EGFWEELLNE--RFEGELDMPGSEVGDDEDVTVLIDRFGYLGSS 364
             + +     EGFWE+LLNE   F+ E        GD E+V VLI + GYLGSS
Sbjct: 357 YHKENNEIYGEGFWEDLLNEGQNFDFE--------GDQENVDVLIQQLGYLGSS 402

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/373 (55%), Positives = 254/373 (68%), Gaps = 30/373 (8%)

Query: 7   IKEEQP----GGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTN 62
           +KEE+     GG+   +G D AA       AP+PMEGLHD GPPPFLTKTY+MVDD  T+
Sbjct: 9   VKEEESHGDGGGLEVVAGEDGAA-AVAAGVAPRPMEGLHDAGPPPFLTKTYDMVDDAGTD 67

Query: 63  EVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEG 122
             VSWS    SFVVWDPHAF+T LLPR FKH+NFSSFVRQLNTYGFRK+DPDRWEF+NE 
Sbjct: 68  AAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEN 127

Query: 123 FLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKL 182
           FLRG+RHLLKNIKRRK PS      Q+LGP +E+G FG D E +RL RDKQ LM E+VKL
Sbjct: 128 FLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKL 187

Query: 183 RQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMT 242
           RQ+QQNT+A L+AME RL+GTE++QQQMM+FLAR M+NP FL+QL+ Q E RKEL++A++
Sbjct: 188 RQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAIS 247

Query: 243 KKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEM--SELEALALEMQG--- 297
           KKRRR IDQGP    V  SS   E  S    +P E  ++  +   S+LE  A++  G   
Sbjct: 248 KKRRRRIDQGPEVDDVGTSSSI-EQESPALFDPQESVEFLIDGIPSDLENSAMDAGGLVE 306

Query: 298 -----YGRTRSEQEGPQELEPPESGARELDEGFWEELLNERFEG-ELDMPGSEVGDDEDV 351
                 G +  +Q GPQ          EL++ FWEELLNE   G E D P  E    +D+
Sbjct: 307 PQDFDVGASEQQQIGPQ---------GELNDNFWEELLNEGLVGEENDNPVVE----DDM 353

Query: 352 TVLIDRFGYLGSS 364
            VL ++ GYL S+
Sbjct: 354 NVLSEKMGYLNSN 366

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  341 bits (874), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 185/334 (55%), Positives = 233/334 (69%), Gaps = 10/334 (2%)

Query: 34  PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKH 93
           P+PM+GL D GPPPFLTKTY+MVDDP T+ VVSWS    SFVVWDPH F   LLPR+FKH
Sbjct: 25  PRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKH 84

Query: 94  SNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPC 153
           +NFSSFVRQLNTYGFRK+DPD+WEF+NEGFLRG++HLLK+IKRRK P+   P  Q+LG  
Sbjct: 85  NNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSS-PSQQSLGSF 143

Query: 154 VELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213
           +E+G FG +GE ++L RDK  LM E+VKLRQ+QQNT++ LQAME +L+GTE+KQQ MM+F
Sbjct: 144 LEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAF 203

Query: 214 LARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGP-IGAGVAGSSDFGEGMSSVK 272
           L+R M NP F++QL  Q E RKELEE ++KKRRR IDQGP + +   GSS   E +S V 
Sbjct: 204 LSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRIDQGPELDSMGTGSSP--EQVSQVM 261

Query: 273 AEPLEYGDYGFEM--SELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEGFWEELL 330
            EP +  D  F    S+LE+ ++E  G    +       E    +    EL+E FWE+LL
Sbjct: 262 FEPHDPVDSLFNGVPSDLESSSVEANGGKAQQDVASSSSEHGKIKPSNGELNEDFWEDLL 321

Query: 331 NERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSS 364
           +   EG LD        D D+ +L  + GYL SS
Sbjct: 322 H---EGGLDEDTRNPAID-DMNLLSQKMGYLNSS 351

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score =  339 bits (870), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/366 (51%), Positives = 236/366 (64%), Gaps = 18/366 (4%)

Query: 6   MIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVV 65
           M+KEE P   P E              AP+PMEGLH+ GPPPFLTKT+++V DP T+ VV
Sbjct: 8   MVKEEWPPSSPEEG------------EAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVV 55

Query: 66  SWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLR 125
           SW R G SFVVWDPH F+   LPR FKH+NFSSFVRQLNTYGFRKIDPDRWEF+N+GFLR
Sbjct: 56  SWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLR 115

Query: 126 GERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQ 185
           G+RHLLK IKRR+  S      QALG C+E+G+FGLD E +RL RDK  L+ E+VKLR +
Sbjct: 116 GQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHK 175

Query: 186 QQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKR 245
           QQ+T+A ++AME RL+  E+KQ QMM FLARAMQNP F  QL+ Q++K K LE+  +KKR
Sbjct: 176 QQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKR 235

Query: 246 RRPIDQGP-IGAGVAGSSDFGEGMSSVKAEPLEYGDYGFE--MSELEALALEMQGYGRTR 302
            R ID  P +  G     D  E  S++  +P  + +   E   SELE LAL +QG G+ +
Sbjct: 236 TRSIDIVPFLNPGEVSQGDQLE--STLLFDPRPFAELNDEPAKSELENLALNIQGLGKGK 293

Query: 303 SE-QEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYL 361
            +      +     S   EL + FWEELLNE    +  +PG E      V  L  + GYL
Sbjct: 294 QDVNRTRNQPRNQASNETELTDDFWEELLNEGARDDAGIPGMERRRPRYVDALAQKLGYL 353

Query: 362 GSSPKQ 367
            +S ++
Sbjct: 354 SNSSQK 359

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score =  334 bits (857), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/347 (55%), Positives = 238/347 (68%), Gaps = 27/347 (7%)

Query: 32  AAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHF 91
           AAP+PMEGLH+ GPPPFLTKTY++V+DP T+ VVSWSR G SFVVWDPH F+  LLPR F
Sbjct: 27  AAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLF 86

Query: 92  KHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPP-PQAL 150
           KH+NFSSFVRQLNTYGFRK+DPDRWEF+NEGFLRG+RHLLK IKRRK PS   P   Q+L
Sbjct: 87  KHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSL 146

Query: 151 GPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210
             C+E+G FG + E +RL RDK  L+ E+VKLRQ+QQ T+ +++AME RL   E+KQ QM
Sbjct: 147 TSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQM 206

Query: 211 MSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSS 270
           M FLARAM+NP F QQL QQKEKRKELE+A++KKRRRPID  P         D GE   +
Sbjct: 207 MGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRRPIDNVPF-------YDPGETSQT 259

Query: 271 VKAEPLEYGDYGF--EMS-----ELEALALEMQGYGRTRSEQEGPQELEPPESGARELDE 323
            + +     D G   E+S     ELE LA+ +Q  G+ + ++E   +     +G  EL +
Sbjct: 260 EQLDSPYLFDSGVLNELSEPGIPELENLAVNIQDLGKGKVDEERQNQT----NGQAELGD 315

Query: 324 GFWEELLNERFEG---ELDMPGSEVGDDEDVTVLIDRFGYLGS-SPK 366
            FW ELL E F G   + ++ G   G DE    L  + GYL S SPK
Sbjct: 316 DFWAELLVEDFTGKEEQSELDGKIDGIDE----LAQQLGYLSSTSPK 358

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV12|HFA7A_ARATH Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1

 Score =  308 bits (789), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 207/299 (69%), Gaps = 55/299 (18%)

Query: 37  MEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNF 96
           MEGLH+  PPPFLTKT+EMVDDPNT+ +VSW+RGG SFVVWD H+FST LLPRHFKHSNF
Sbjct: 19  MEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNF 78

Query: 97  SSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVEL 156
           SSF+RQLNTYGFRKI+ +RWEF+NE FL G+R LLKNIKRR  P  P   P +   C EL
Sbjct: 79  SSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRN-PFTPSSSP-SHDACNEL 136

Query: 157 GRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLAR 216
                        R+KQ LMME+V LRQQQQ T++Y++AME R+EGTE+KQ+QMMSFLAR
Sbjct: 137 R------------REKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLAR 184

Query: 217 AMQNPAFLQQLVQQKEKR-KELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEP 275
           AMQ+P+FL QL++Q++K+ KELE+  + KR+R            GSS             
Sbjct: 185 AMQSPSFLHQLLKQRDKKIKELEDNESAKRKR------------GSSS------------ 220

Query: 276 LEYGDYGFEMSELEALALEMQGYGRTRS--EQEGPQELEPPESGARELDEGFWEELLNE 332
                    MSELE LALEMQG+G+ R+  E+E  Q +       RELD+GFWEELL++
Sbjct: 221 ---------MSELEVLALEMQGHGKQRNMLEEEDHQLV-----VERELDDGFWEELLSD 265

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/334 (48%), Positives = 214/334 (64%), Gaps = 21/334 (6%)

Query: 34  PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKH 93
           P+PMEGL++TGPPPFLTKTYEMV+DP T+ VVSWS G  SFVVWD H FST+LLPR+FKH
Sbjct: 31  PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKH 90

Query: 94  SNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALG-P 152
           SNFSSF+RQLNTYGFRKIDPDRWEF+NEGFL G++HLLKNIKRR+         Q  G  
Sbjct: 91  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMS 150

Query: 153 CVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMS 212
           CVE+G++G DGE ERL RD   L+ E+V+LRQQQ ++++ + AME RL  TEK+QQQMM+
Sbjct: 151 CVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMT 210

Query: 213 FLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVK 272
           FLA+A+ NP F+QQ     +++K L      ++RR      +G            M    
Sbjct: 211 FLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGT-----------MEENL 259

Query: 273 AEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEGFWEELLNE 332
               E+     +M  L A A++ +      +++E  Q LE      R   +G  E  L+ 
Sbjct: 260 LHDQEFDRMKDDMEMLFAAAIDDEANNSMPTKEE--QCLEAMNVMMR---DGNLEAALDV 314

Query: 333 RFEGELDMPGSEVG-DDEDVTVLIDRFGYLGSSP 365
           + E   D+ GS +  D +D+  ++D+ G+LGS P
Sbjct: 315 KVE---DLVGSPLDWDSQDLHDMVDQMGFLGSEP 345

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MN7|HFA2A_ORYSJ Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 171/237 (72%), Gaps = 16/237 (6%)

Query: 30  MMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPR 89
           +M  P+PMEGL + GPPPFL KTYE+VDDP T+ V+SW   G SFVVWD +AF+  LLPR
Sbjct: 36  VMDLPRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPR 95

Query: 90  HFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPP-- 147
           +FKHSNFSSFVRQLNTYGFRK+DPDRWEF+NEGFLRG++ LLK IKRR+ P    P    
Sbjct: 96  YFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSS 155

Query: 148 ---------QALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMEL 198
                    Q    C+E+G+FG DG   RL RDK  L+ E+VKLRQ+QQ TRA +QAME 
Sbjct: 156 SSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEE 215

Query: 199 RLEGTEKKQQQMMSFLARAMQNPAFLQQLV-----QQKEKRKELEEAMTKKRRRPID 250
           R+   E+KQQQM  FLARAM+NP FLQ LV     Q   + + LE+A++KKRRRPI+
Sbjct: 216 RISAAEQKQQQMTVFLARAMKNPGFLQMLVDRQAGQHGARNRVLEDALSKKRRRPIE 272

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M1V5|HFA7B_ARATH Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/306 (52%), Positives = 200/306 (65%), Gaps = 57/306 (18%)

Query: 31  MAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRH 90
           M  P PMEGL + GP PFLTKT+EMV DPNTN +VSW+RGG+SFVVWDPH+FS ++LP +
Sbjct: 12  MPPPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLY 71

Query: 91  FKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPL------ 144
           FKH+NFSSFVRQLNTYGFRKI+ +RWEF NEGFL G+R LLK+IKRR + S P       
Sbjct: 72  FKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQ 131

Query: 145 PPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTE 204
             P+A  P VEL          +L  ++  LMME+  LRQ++Q  R Y+QAME R+ G E
Sbjct: 132 SQPEAHDPGVELP---------QLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAE 182

Query: 205 KKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDF 264
           KKQ+ MMSFL RA++NP+ LQQ+ +QK  R+E   AM       IDQ    AG+      
Sbjct: 183 KKQRHMMSFLRRAVENPSLLQQIFEQKRDREEA--AM-------IDQ----AGL------ 223

Query: 265 GEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEG 324
                 +K E +E+      +SELEALALEMQGYGR R+           +   RELD+G
Sbjct: 224 ------IKMEEVEH------LSELEALALEMQGYGRQRT-----------DGVERELDDG 260

Query: 325 FWEELL 330
           FWEELL
Sbjct: 261 FWEELL 266

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  280 bits (716), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 193/305 (63%), Gaps = 21/305 (6%)

Query: 32  AAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHF 91
            A  PMEGLHD GPPPFL+KTYEMV+D +T++V+SWS    SF+VWD H FST+LLPR F
Sbjct: 16  TAVLPMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFF 75

Query: 92  KHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALG 151
           KHSNFSSF+RQLNTYGFRK+DPDRWEF+NEGFL G++HLLK IKRR+   Q +   Q  G
Sbjct: 76  KHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSM-NQQGSG 134

Query: 152 PCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMM 211
            C+E+G +G++ E ERL RDK  LM E+VKLRQQQQ+TR  + AM  ++E  E+KQ QMM
Sbjct: 135 ACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMM 194

Query: 212 SFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSV 271
           SFLA+   NP FLQQ + ++  RK+ +     ++RR      +   V GS          
Sbjct: 195 SFLAKIFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRL----TMTPSVTGSD--------- 241

Query: 272 KAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEG---PQELEPPESGARE-LDEGFWE 327
             +P+ Y     + SE E  ++EM       +E      P  +        E + +  WE
Sbjct: 242 --QPMNYSS-SLQESEAELASIEMLFSAAMDNESSSNVRPDSVVTANGTDMEPVADDIWE 298

Query: 328 ELLNE 332
           ELL+E
Sbjct: 299 ELLSE 303

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
255559849	360	DNA binding protein, putative [Ricinus c	0.945	0.963	0.694	1e-137
224082688	331	predicted protein [Populus trichocarpa]	0.888	0.984	0.733	1e-135
225437154	361	PREDICTED: heat stress transcription fac	0.975	0.991	0.691	1e-135
356572226	370	PREDICTED: heat stress transcription fac	0.980	0.972	0.667	1e-128
449458520	374	PREDICTED: heat stress transcription fac	0.961	0.943	0.627	1e-126
296084484	361	unnamed protein product [Vitis vinifera]	0.809	0.822	0.663	1e-118
356503562	373	PREDICTED: heat stress transcription fac	0.948	0.932	0.611	1e-116
224066371	282	predicted protein [Populus trichocarpa]	0.743	0.968	0.712	1e-116
449474405	349	PREDICTED: heat stress transcription fac	0.942	0.991	0.592	1e-111
449455348	348	PREDICTED: heat stress transcription fac	0.940	0.991	0.592	1e-110

>gi|255559849|ref|XP_002520943.1| DNA binding protein, putative [Ricinus communis] gi|223539780|gb|EEF41360.1| DNA binding protein, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/373 (69%), Positives = 291/373 (78%), Gaps = 26/373 (6%)

Query: 1   MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPN 60
           MNPY+ +KEE  G   S+SG DE  +  M +  PQPMEGLHDTGPPPFLTKT+EMVDDP 
Sbjct: 2   MNPYFTVKEEYAGLSSSQSG-DEPPLAQMQIP-PQPMEGLHDTGPPPFLTKTFEMVDDPI 59

Query: 61  TNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSN 120
           TN VVSWS GG+SFVVWDPHAFST LLPR+FKH+NFSSFVRQLNTYGF+KIDPDRWEF+N
Sbjct: 60  TNHVVSWSAGGISFVVWDPHAFSTGLLPRYFKHNNFSSFVRQLNTYGFKKIDPDRWEFAN 119

Query: 121 EGFLRGERHLLKNIKRRKAPSQPLP-------PPQALGPCVELGRFGLDGEFERLIRDKQ 173
           EGFLRG++H LKNIKRRKAPSQPLP         +ALG CVE+GRFGLD E +RL RDKQ
Sbjct: 120 EGFLRGQKHQLKNIKRRKAPSQPLPHHQQRQQQQEALGACVEVGRFGLDREVDRLKRDKQ 179

Query: 174 FLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEK 233
            LMMELVKLRQQQQNTRAY+Q ME RL+GTE KQQQMM FLARA+QNPAFLQQL QQK+K
Sbjct: 180 VLMMELVKLRQQQQNTRAYIQNMEQRLQGTELKQQQMMQFLARAVQNPAFLQQLAQQKDK 239

Query: 234 RKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALAL 293
           RKELEEAMTKKRRRPI QGP   G + S      ++++KAEPLE GDYGF +SELEALAL
Sbjct: 240 RKELEEAMTKKRRRPIAQGPSNGGTSHS------LNNIKAEPLEIGDYGFGVSELEALAL 293

Query: 294 EMQGYGRTRSEQEGPQELEPP--ESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDV 351
           EMQGYGR R  QE  ++ +    ESG RELD+GFWEELL+E   G         G + DV
Sbjct: 294 EMQGYGRARRGQEEEEDDDVEALESGDRELDDGFWEELLSESTTG---------GQNGDV 344

Query: 352 TVLIDRFGYLGSS 364
            VL DR  YL SS
Sbjct: 345 NVLADRLCYLSSS 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082688|ref|XP_002306796.1| predicted protein [Populus trichocarpa] gi|222856245|gb|EEE93792.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/341 (73%), Positives = 276/341 (80%), Gaps = 15/341 (4%)

Query: 31  MAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRH 90
           M  PQP EGLHDTGPPPFLTKT++MVDDP TN +VSW+RGG SFV WDPH+FST+LLPR+
Sbjct: 1   MLPPQPREGLHDTGPPPFLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSFSTNLLPRY 60

Query: 91  FKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQAL 150
           FKH+NFSSFVRQLNTYGFRKIDPDRWEF+NEGFL G++HLL+NIKRRKAPSQPL   QA 
Sbjct: 61  FKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLSGQKHLLRNIKRRKAPSQPLTQQQAP 120

Query: 151 GPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210
             CVE+GRFGLDGE +RL RDKQ LMMELVKLRQQQQN R+Y+QAM+ RL+  E+KQQQM
Sbjct: 121 DACVEVGRFGLDGEIDRLRRDKQVLMMELVKLRQQQQNARSYIQAMDQRLQAIEQKQQQM 180

Query: 211 MSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQ----GPIGAGVAGSSDFGE 266
           M FLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQ    G  G     SS  G 
Sbjct: 181 MQFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGSSRGGGGRRGGESSHIGG 240

Query: 267 GMSSVKAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQE-GPQELEPPESGARELDEGF 325
             + +KAEPLE GD  FE+SELEALALEMQGYGR R EQE G +ELE PES  RELDEGF
Sbjct: 241 SANPIKAEPLESGDLEFEVSELEALALEMQGYGRARREQEDGVEELETPESKDRELDEGF 300

Query: 326 WEELLNERFEGELDMPGSEVGDDEDVTVLIDRFGYLGSSPK 366
           WEELLNE          S  GD++DV  L +R GYLGSSPK
Sbjct: 301 WEELLNE----------SAGGDEDDVNTLAERLGYLGSSPK 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437154|ref|XP_002280618.1| PREDICTED: heat stress transcription factor A-6b [Vitis vinifera]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/369 (69%), Positives = 294/369 (79%), Gaps = 11/369 (2%)

Query: 1   MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPN 60
           MNP Y +KEE PG   S    +   V       PQP+EGLHD GPPPFLTKT+++VDDP 
Sbjct: 1   MNPMYPVKEEFPGSSSSPQSGEPPVV-------PQPVEGLHDAGPPPFLTKTFDIVDDPA 53

Query: 61  TNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSN 120
           ++ VVSWSR G SFVVWDPHAFST+LLP++FKH+NFSSFVRQLNTYGFRKIDPDRWEF+N
Sbjct: 54  SDHVVSWSRAGSSFVVWDPHAFSTNLLPKNFKHNNFSSFVRQLNTYGFRKIDPDRWEFAN 113

Query: 121 EGFLRGERHLLKNIKRRKAPSQPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMELV 180
           EGF+RG+RHLLKNI+RRK PSQ  PP QAL PCVE+GRFGLDGE +RL RDK  LMMELV
Sbjct: 114 EGFIRGQRHLLKNIRRRKTPSQAPPPHQALDPCVEVGRFGLDGEVDRLQRDKHVLMMELV 173

Query: 181 KLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEA 240
           KLRQQQQNTR  LQAME RL+GTE KQQQMM+FLARAMQNPAF+QQLVQQKE+RKE+ EA
Sbjct: 174 KLRQQQQNTRITLQAMEQRLQGTEIKQQQMMNFLARAMQNPAFIQQLVQQKERRKEIVEA 233

Query: 241 MTKKRRRPIDQGPIGAGVAGSSDFGEGMSS-VKAEPLEYGD-YGFEMSELEALALEMQGY 298
           ++KKRRRPIDQG  GAG   SS  G G+ + +K EPL + +  GFE+SELEALA EMQG 
Sbjct: 234 ISKKRRRPIDQGTSGAGGTESS-HGNGLRNPIKIEPLHFTEGNGFEVSELEALAFEMQGL 292

Query: 299 GRTRSEQEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGS-EVGDDEDVTVLIDR 357
           GR R E E  +EL+PPES  +ELDEGFWEELLNERF     +PG+    ++EDV VL  R
Sbjct: 293 GRPRKELEDHEELDPPESEDKELDEGFWEELLNERFGCPSSLPGAEGEEEEEDVNVLAGR 352

Query: 358 FGYLGSSPK 366
           FGYLGSSP+
Sbjct: 353 FGYLGSSPQ 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572226|ref|XP_003554271.1| PREDICTED: heat stress transcription factor A-6b-like [Glycine max]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/376 (66%), Positives = 291/376 (77%), Gaps = 16/376 (4%)

Query: 1   MNPYYMIKEE-----QPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEM 55
           MN  Y +KEE      P      +G DE+A    M+  P+PMEGLH+ GPPPFLTKTY+ 
Sbjct: 1   MNYLYPVKEEYLESPPPSSSSPTTGVDESA----MVPPPRPMEGLHEIGPPPFLTKTYDA 56

Query: 56  VDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDR 115
           V+DP T+ +VSW+RGG SFVVWDPHAFS  LLPR+FKH+NFSSFVRQLNTYGFRKIDPDR
Sbjct: 57  VEDPTTSHIVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR 116

Query: 116 WEFSNEGFLRGERHLLKNIKRRKAPSQPLPPP----QALGPCVELGRFGLDGEFERLIRD 171
           WEF+NEGFLRG RH L +I+RRK PS+P        QA G CVE+GRFGLD E +RL RD
Sbjct: 117 WEFANEGFLRGHRHQLASIRRRKQPSRPYSSSSSSQQAQGHCVEVGRFGLDEEVDRLRRD 176

Query: 172 KQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQK 231
           K  LMMELV+LRQQQ NTR+YLQAME RL GTE KQQQMM+FLARA++NP F+QQL+QQK
Sbjct: 177 KHVLMMELVRLRQQQLNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQK 236

Query: 232 EKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEAL 291
           EKRKELEEAM+KKRRRPI+ GP G G   SS   EG SSVK EPL  G+YGF +SELE L
Sbjct: 237 EKRKELEEAMSKKRRRPIEGGPSGVGEP-SSGGEEGRSSVKVEPLVLGEYGFGVSELEVL 295

Query: 292 ALEMQGYGR-TRSEQEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDED 350
           A+EMQGYGR  R ++E P+ LE  E   +ELDEGFWEEL +E FEGELD+P S+   DED
Sbjct: 296 AMEMQGYGRGRREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQ-DQDED 354

Query: 351 VTVLIDRFGYLGSSPK 366
           V+VL +RFGYLGSSPK
Sbjct: 355 VSVLANRFGYLGSSPK 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458520|ref|XP_004146995.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus] gi|449491566|ref|XP_004158938.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/381 (62%), Positives = 281/381 (73%), Gaps = 28/381 (7%)

Query: 1   MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPN 60
           MNP + IKEE PG   S+   + +AV+T     P PMEGLHD GPPPFLTKT+E+VDD N
Sbjct: 5   MNPLFPIKEEFPGSSSSDVDGERSAVLT----PPVPMEGLHDAGPPPFLTKTFEIVDDFN 60

Query: 61  TNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSN 120
           T+ V+SWS  G SF+VWDPH FST LLPR FKH+NFSSFVRQLNTYGFRKIDPDRWEF+N
Sbjct: 61  TDHVISWSFSGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFAN 120

Query: 121 EGFLRGERHLLKNIKRRKAPS----QPLPPPQALGPCVELGRFGLDGEFERLIRDKQFLM 176
           EGF+RG++HLLKNIKRR+  S    Q L    A G CVE+G+FG+D E +RL RDKQ LM
Sbjct: 121 EGFIRGQKHLLKNIKRRRTTSYHHHQTLQSQGASGACVEVGQFGVDAEMDRLKRDKQVLM 180

Query: 177 MELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKE 236
           MELVKLRQ+QQNTRAYLQAME RL GTE KQ+QMM+FLARAM+NP+F+QQL+QQKEKRKE
Sbjct: 181 MELVKLRQEQQNTRAYLQAMEQRLRGTEIKQKQMMNFLARAMKNPSFIQQLIQQKEKRKE 240

Query: 237 LEEAMTKKRRRPIDQG---PIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALAL 293
           LEEA+TKKRRRPI+Q      G G +G    GEG +++K EPLE  +YGF ++ELEALAL
Sbjct: 241 LEEAITKKRRRPIEQAGQHKCGGG-SGRRFLGEGSNTIKIEPLENDEYGFGITELEALAL 299

Query: 294 EMQGYGRTR---------SEQEGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSE 344
           EMQG G+TR          ++E    L P E   + LDEGFWEEL +ER E         
Sbjct: 300 EMQGLGKTRYEDGEEEEEEDEEDNDNLLPSEDEDKVLDEGFWEELFSERLE-------EA 352

Query: 345 VGDDEDVTVLIDRFGYLGSSP 365
             +DE V VL DR GYLGSSP
Sbjct: 353 RNEDEHVNVLADRLGYLGSSP 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084484|emb|CBI25043.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 254/336 (75%), Gaps = 39/336 (11%)

Query: 32  AAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHF 91
             PQP+EGLHD GPPPFLTKT+++VDDP ++ VVSWSR G SFVVWDPHAFST+LLP++F
Sbjct: 64  VVPQPVEGLHDAGPPPFLTKTFDIVDDPASDHVVSWSRAGSSFVVWDPHAFSTNLLPKNF 123

Query: 92  KHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALG 151
           KH+NFSSFVRQLNTYGFRKIDPDRWEF+NEGF+RG+RHLLKNI+RRK PSQ  PP QAL 
Sbjct: 124 KHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFIRGQRHLLKNIRRRKTPSQAPPPHQALD 183

Query: 152 PCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMM 211
           P            F+RL RDK  LMMELVKLRQQQQNTR  LQAME RL+GTE KQQQMM
Sbjct: 184 P------------FDRLQRDKHVLMMELVKLRQQQQNTRITLQAMEQRLQGTEIKQQQMM 231

Query: 212 SFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSV 271
           +FLARAMQNPAF+QQLVQQKE+RKE+ EA++KKRRRPIDQG                   
Sbjct: 232 NFLARAMQNPAFIQQLVQQKERRKEIVEAISKKRRRPIDQGTRN---------------- 275

Query: 272 KAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQEGPQELEPPESGARELDEGFWEELLN 331
                     GFE+SELEALA EMQG GR R E E  +EL+PPES  +ELDEGFWEELLN
Sbjct: 276 ----------GFEVSELEALAFEMQGLGRPRKELEDHEELDPPESEDKELDEGFWEELLN 325

Query: 332 ERFEGELDMPGS-EVGDDEDVTVLIDRFGYLGSSPK 366
           ERF     +PG+    ++EDV VL  RFGYLGSSP+
Sbjct: 326 ERFGCPSSLPGAEGEEEEEDVNVLAGRFGYLGSSPQ 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503562|ref|XP_003520576.1| PREDICTED: heat stress transcription factor A-6b-like [Glycine max]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/391 (61%), Positives = 278/391 (71%), Gaps = 43/391 (10%)

Query: 1   MNPYYMIKEE------QPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYE 54
           MN  Y +KEE           P+  G DE+A    M+  P+PM GLH+ GPPPFLTKTY+
Sbjct: 1   MNYLYPVKEEYLEWPPPSSSPPTTGGVDESA----MVPPPRPMGGLHEIGPPPFLTKTYD 56

Query: 55  MVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPD 114
            V+DP T+ +VSW+RGG SFVVWDPHAFS  LLPR+FKH+NFSSFVRQLNTYGFRKIDPD
Sbjct: 57  AVEDPTTSHMVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPD 116

Query: 115 RWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQAL---------------GPCVELGRF 159
           RWEF+NEGFLRG RHLL NI+RRK PS       +                G CVE+GRF
Sbjct: 117 RWEFANEGFLRGHRHLLANIRRRKQPSSQPSSSSSSSSYYYYSSSSQQAQQGHCVEVGRF 176

Query: 160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQ 219
           GLD E +RL RDK  LMMELVKLRQQQQNTR+YLQAME RL GTE KQQQMM+FLARA++
Sbjct: 177 GLDEEIDRLRRDKHVLMMELVKLRQQQQNTRSYLQAMEERLRGTEIKQQQMMAFLARALK 236

Query: 220 NPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYG 279
           NP F+QQL+QQKEKRKELEEAM+KKRRRPI++GP   GV      GE  SSVK E L +G
Sbjct: 237 NPTFIQQLLQQKEKRKELEEAMSKKRRRPIERGP-NHGVV-----GEESSSVKVESLVFG 290

Query: 280 D-YGFEMSELEALALEMQGYGRTRSEQ-EGPQEL--EPPESGARELDEGFWEELLNERFE 335
           D YGF +SELE LA+EMQGYG+ R EQ E P E   +  E   +ELDEGFWEEL +E F 
Sbjct: 291 DEYGFGVSELEVLAMEMQGYGKGRREQEEEPDEALDQSQERLEKELDEGFWEELFSEGF- 349

Query: 336 GELDMPGSEVGDDEDVTVLIDRFGYLGSSPK 366
                   +  +++ V VL +RFGYLGSSPK
Sbjct: 350 -------EDEEEEDHVNVLANRFGYLGSSPK 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066371|ref|XP_002302091.1| predicted protein [Populus trichocarpa] gi|222843817|gb|EEE81364.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/303 (71%), Positives = 237/303 (78%), Gaps = 30/303 (9%)

Query: 31  MAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRH 90
           M  PQPMEGLHDTGPPPFLTKT++MVDDP TN +VSWSRGG SFVVWDP++FS +LLPR+
Sbjct: 1   MLPPQPMEGLHDTGPPPFLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPYSFSANLLPRY 60

Query: 91  FKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQAL 150
           FKH+NFSSFVRQLNTYGFRKIDPDRWEF+NEGFLRG++ LL+NIKRRKA SQPL   QA 
Sbjct: 61  FKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQKQLLRNIKRRKAASQPLSQQQAP 120

Query: 151 GPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210
             CVE+ RFGLDGE + L RD+  LMMEL KLRQQQQ  R+Y+QAME RL+GTE+KQQQM
Sbjct: 121 DACVEVSRFGLDGEIDLLKRDRHVLMMELAKLRQQQQKARSYIQAMEQRLQGTEQKQQQM 180

Query: 211 MSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMSS 270
           M FLARAMQNPAFL QLVQQK KRKELEEAMTKKRR P+DQ P                 
Sbjct: 181 MQFLARAMQNPAFLLQLVQQKGKRKELEEAMTKKRRIPVDQRPS---------------- 224

Query: 271 VKAEPLEYGDYGFEMSELEALALEMQGYGRTRSEQE-GPQELEPPESGARELDEGFWEEL 329
                         MSELEALALEMQGYGR R EQE G +ELEP ESG RELDEGFWEEL
Sbjct: 225 -------------RMSELEALALEMQGYGRARREQEDGVEELEPLESGDRELDEGFWEEL 271

Query: 330 LNE 332
           LNE
Sbjct: 272 LNE 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474405|ref|XP_004154162.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus] gi|449515740|ref|XP_004164906.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/368 (59%), Positives = 271/368 (73%), Gaps = 22/368 (5%)

Query: 1   MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPN 60
           MNP Y +KEE  G   SE G         +   PQPMEGL+D  PPPFL KT+++VDDP 
Sbjct: 1   MNPQYPVKEEDWGPSSSEFGGGYG-----LPPTPQPMEGLNDVSPPPFLIKTFDIVDDPL 55

Query: 61  TNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSN 120
           T+ ++SW RGG+SF+VWDP AFS +LLPR FKH+NFSSF+RQLNTYGFRKI+P+RWEF+N
Sbjct: 56  TDHIISWGRGGISFIVWDPKAFSANLLPRFFKHNNFSSFIRQLNTYGFRKINPERWEFAN 115

Query: 121 EGFLRGERHLLKNIKRRKAPSQP-LPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMEL 179
           EGFLRG++HLL+ IKRRK P+   LP  Q    CVE+GRFGLD E +RL RDKQ +MMEL
Sbjct: 116 EGFLRGQKHLLRTIKRRKPPTTDHLPSEQEPSACVEIGRFGLDVELDRLKRDKQVVMMEL 175

Query: 180 VKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEE 239
           VKLR++QQNTRAY+QAME +L+GTE KQ+QMM FLARAMQNP F+ QL+QQK+KR ++EE
Sbjct: 176 VKLRREQQNTRAYIQAMEQKLQGTEMKQRQMMKFLARAMQNPDFVHQLIQQKKKR-DIEE 234

Query: 240 AMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYG 299
           A TKKRRRPIDQGP     +  S   E +S++K EP+E+   G+E+SELEALALEMQG G
Sbjct: 235 ASTKKRRRPIDQGP---ASSSRSSEEESISNIKIEPIEF--CGYEVSELEALALEMQGLG 289

Query: 300 R-TRSEQEGPQEL-EPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDR 357
           R  + E +  +E+ +  E+G  ELDEGFWEE  + R E        E  +D+ V  L +R
Sbjct: 290 RAVKKETKVKEEMQQSSENGDAELDEGFWEEFFSGRIE--------EGENDDMVKALSNR 341

Query: 358 FGYLGSSP 365
           FGYLGS P
Sbjct: 342 FGYLGSIP 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455348|ref|XP_004145415.1| PREDICTED: heat stress transcription factor A-2d-like [Cucumis sativus]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/368 (59%), Positives = 271/368 (73%), Gaps = 23/368 (6%)

Query: 1   MNPYYMIKEEQPGGIPSESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPN 60
           MNP Y +KEE  G   SE G         +   PQPMEGL+D  PPPFL KT+++VDDP 
Sbjct: 1   MNPQYPVKEEDWGPSSSEFGG------YGLPPTPQPMEGLNDVSPPPFLIKTFDIVDDPL 54

Query: 61  TNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSN 120
           T+ ++SW RGG+SF+VWDP AFS +LLPR FKH+NFSSF+RQLNTYGFRKI+P+RWEF+N
Sbjct: 55  TDHIISWGRGGISFIVWDPKAFSANLLPRFFKHNNFSSFIRQLNTYGFRKINPERWEFAN 114

Query: 121 EGFLRGERHLLKNIKRRKAPSQP-LPPPQALGPCVELGRFGLDGEFERLIRDKQFLMMEL 179
           EGFLRG++HLL+ IKRRK P+   LP  Q    CVE+GRFGLD E +RL RDKQ +MMEL
Sbjct: 115 EGFLRGQKHLLRTIKRRKPPTTDHLPSEQEPSACVEIGRFGLDVELDRLKRDKQVVMMEL 174

Query: 180 VKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEE 239
           VKLR++QQNTRAY+QAME +L+GTE KQ+QMM FLARAMQNP F+ QL+QQK+KR ++EE
Sbjct: 175 VKLRREQQNTRAYIQAMEQKLQGTEMKQRQMMKFLARAMQNPDFVHQLIQQKKKR-DIEE 233

Query: 240 AMTKKRRRPIDQGPIGAGVAGSSDFGEGMSSVKAEPLEYGDYGFEMSELEALALEMQGYG 299
           A TKKRRRPIDQGP     +  S   E +S++K EP+E+   G+E+SELEALALEMQG G
Sbjct: 234 ASTKKRRRPIDQGP---ASSSRSSEEESISNIKIEPIEF--CGYEVSELEALALEMQGLG 288

Query: 300 R-TRSEQEGPQEL-EPPESGARELDEGFWEELLNERFEGELDMPGSEVGDDEDVTVLIDR 357
           R  + E +  +E+ +  E+G  ELDEGFWEE  + R E        E  +D+ V  L +R
Sbjct: 289 RAVKKETKVKEEMQQSSENGDAELDEGFWEEFFSGRIE--------EGENDDMVKALSNR 340

Query: 358 FGYLGSSP 365
           FGYLGS P
Sbjct: 341 FGYLGSIP 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.814	0.736	0.541	5.6e-84
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.544	0.735	0.637	1.1e-74
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.621	0.660	0.595	9.7e-74
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.553	0.719	0.577	1.4e-66
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.623	0.472	0.530	1.4e-62
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.588	0.461	0.56	1.6e-61
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.561	0.428	0.582	3.9e-60
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.583	0.432	0.536	9.3e-59
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.626	0.815	0.450	4e-51
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.610	0.543	0.450	8.5e-49

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 178/329 (54%), Positives = 224/329 (68%)

Query:     1 MNPYY-MIKEEQPGGI---PS---------ESGADEAAVMT-MMMAAPQPMEGLHDTGPP 46
             M+P +  IKEE P G    PS          S   EAA+     ++ PQP+EGLH++GPP
Sbjct:     1 MDPSFRFIKEEFPAGFSDSPSPPSSSSYLYSSSMAEAAINDPTTLSYPQPLEGLHESGPP 60

Query:    47 PFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTY 106
             PFLTKTY++V+D  TN VVSWS+   SF+VWDP AFS +LLPR FKH+NFSSFVRQLNTY
Sbjct:    61 PFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTY 120

Query:   107 GFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXX--------XXXXXXXXXCVELGR 158
             GFRK++PDRWEF+NEGFLRG++HLLKNI+RRK                      C+E+GR
Sbjct:   121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGR 180

Query:   159 FGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAM 218
             +GLDGE + L RDKQ LMMELV+LRQQQQ+T+ YL  +E +L+ TE KQ+QMMSFLARAM
Sbjct:   181 YGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAM 240

Query:   219 QNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGS-SDFGEGMSSVKA---- 273
             QNP F+QQLV+QKEKRKE+EEA++KKR+RPIDQG       G  S +G  +++  +    
Sbjct:   241 QNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDESGYGNDVAASSSALIG 300

Query:   274 --EPLEYGDYG-FEMSXXXXXXXXMQGYG 299
               +   YG+   FEMS        +QG G
Sbjct:   301 MSQEYTYGNMSEFEMSELDKLAMHIQGLG 329

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 137/215 (63%), Positives = 167/215 (77%)

Query:    34 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKH 93
             PQPMEGLH+  PPPFLTKT+EMVDDPNT+ +VSW+RGG SFVVWD H+FST LLPRHFKH
Sbjct:    16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKH 75

Query:    94 SNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXXXXXXXXXXXC 153
             SNFSSF+RQLNTYGFRKI+ +RWEF+NE FL G+R LLKNIKRR               C
Sbjct:    76 SNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPSHDA--C 133

Query:   154 VELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213
              EL R            +KQ LMME+V LRQQQQ T++Y++AME R+EGTE+KQ+QMMSF
Sbjct:   134 NELRR------------EKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSF 181

Query:   214 LARAMQNPAFLQQLVQQKEKR-KELEEAMTKKRRR 247
             LARAMQ+P+FL QL++Q++K+ KELE+  + KR+R
Sbjct:   182 LARAMQSPSFLHQLLKQRDKKIKELEDNESAKRKR 216

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 137/230 (59%), Positives = 173/230 (75%)

Query:    19 SGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWD 78
             +G+  A+      ++P+PMEGL++TGPPPFLTKTYEMV+DP T+ VVSWS G  SFVVWD
Sbjct:    16 TGSVAASSSVGSSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWD 75

Query:    79 PHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRK 138
              H FST+LLPR+FKHSNFSSF+RQLNTYGFRKIDPDRWEF+NEGFL G++HLLKNIKRR+
Sbjct:    76 SHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRR 135

Query:   139 XXXXXXXXXXXXX-XCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAME 197
                            CVE+G++G DGE ERL RD   L+ E+V+LRQQQ ++++ + AME
Sbjct:   136 NMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAME 195

Query:   198 LRLEGTEKKQQQMMSFLARAMQNPAFLQQL-VQQKEKRKELEEAMTKKRR 246
              RL  TEK+QQQMM+FLA+A+ NP F+QQ  V  KEK+      + +KRR
Sbjct:   196 QRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRR 245

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 119/206 (57%), Positives = 149/206 (72%)

Query:    31 MAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRH 90
             M  P PMEGL + GP PFLTKT+EMV DPNTN +VSW+RGG+SFVVWDPH+FS ++LP +
Sbjct:    12 MPPPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLY 71

Query:    91 FKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXXXXXXXXX 150
             FKH+NFSSFVRQLNTYGFRKI+ +RWEF NEGFL G+R LLK+IKRR             
Sbjct:    72 FKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQ 131

Query:   151 XXCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQM 210
                 E    G+  E  +L  ++  LMME+  LRQ++Q  R Y+QAME R+ G EKKQ+ M
Sbjct:   132 SQ-PEAHDPGV--ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHM 188

Query:   211 MSFLARAMQNPAFLQQLVQQKEKRKE 236
             MSFL RA++NP+ LQQ+ +QK  R+E
Sbjct:   189 MSFLRRAVENPSLLQQIFEQKRDREE 214

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 129/243 (53%), Positives = 164/243 (67%)

Query:    17 SESGADEAAVMTMMMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVV 76
             S+ G D  ++ T     PQP   L    PPPFL+KTY+MVDD NT+ +VSWS    SF+V
Sbjct:     9 SDGGGD--SMETKPSPQPQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIV 66

Query:    77 WDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKR 136
             W P  F+  LLP++FKH+NFSSFVRQLNTYGFRK+DPDRWEF+NEGFLRG++HLL++I R
Sbjct:    67 WKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITR 126

Query:   137 RK----------XXXXXXXXXXXXXXCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQ 186
             RK                        CVE+G+FGL+ E ERL RDK  LM ELV+LRQQQ
Sbjct:   127 RKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQ 186

Query:   187 QNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAM--TKK 244
             Q+T   LQ M  RL+G E +QQQ+MSFLA+A+Q+P FL Q +QQ+ ++ E    +  T K
Sbjct:   187 QSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSK 246

Query:   245 RRR 247
             +RR
Sbjct:   247 KRR 249

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 126/225 (56%), Positives = 159/225 (70%)

Query:    46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
             PPFL+KTY+MVDDP T++VVSWS G  SFVVW+   F+   LP++FKH+NFSSFVRQLNT
Sbjct:    22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNT 81

Query:   106 YGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXX-----XXXXXXXXXCVELGRFG 160
             YGFRK+DPDRWEF+NEGFLRG++ +LK+I RRK                   CVE+G+FG
Sbjct:    82 YGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFG 141

Query:   161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQN 220
             L+ E ERL RDK  LM ELV+LRQQQQ T  +LQ +  ++   E++QQQMMSFLA+A+Q+
Sbjct:   142 LEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQS 201

Query:   221 PAFLQQLVQQK-EKRKELEEAMTKKRRRPI-DQGPIGA-GVAGSS 262
             P FL Q  QQ  E  + + E+  KKRR P+ DQ   G+ GV G S
Sbjct:   202 PGFLNQFSQQSNEANQHISES-NKKRRLPVEDQMNSGSHGVNGLS 245

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 124/213 (58%), Positives = 150/213 (70%)

Query:    46 PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
             PPFL+KTY+MVDDP TNEVVSWS G  SFVVW    FS  LLP++FKH+NFSSFVRQLNT
Sbjct:    26 PPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNT 85

Query:   106 YGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXX------XXXXXXXXXXCVELGRF 159
             YGFRK+DPDRWEF+NEGFLRG + LLK+I RRK                    CVE+G+F
Sbjct:    86 YGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKF 145

Query:   160 GLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQ 219
             G++ E ERL RDK  LM ELV+LRQQQQ T   LQ +  +++  E++QQQMMSFLA+A+Q
Sbjct:   146 GIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQ 205

Query:   220 NPAFLQQLVQQKEKRKELE-EAMTKKRRRPIDQ 251
             +P FL QLVQQ       +     KKRR P+D+
Sbjct:   206 SPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDE 238

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 124/231 (53%), Positives = 153/231 (66%)

Query:    34 PQPMEGLHDTG-PPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 92
             P P   L+    PPPFL+KTY+MV+DP T+ +VSWS    SF+VWDP  FS  LLP++FK
Sbjct:    38 PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFK 97

Query:    93 HSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXXXXXXX---- 148
             H+NFSSFVRQLNTYGFRK+DPDRWEF+NEGFLRG++HLLK I RRK              
Sbjct:    98 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQS 157

Query:   149 -----------XXXXCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAME 197
                            CVE+G+FGL+ E E+L RDK  LM ELVKLRQQQQ T   LQ + 
Sbjct:   158 QQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLV 217

Query:   198 LRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQ-QKEKRKELEEAMTKKRRR 247
               L+  E++QQQ+MSFLA+A+QNP FL Q +Q Q +    + EA  K+R R
Sbjct:   218 KHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLR 268

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 113/251 (45%), Positives = 156/251 (62%)

Query:    34 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKH 93
             P P+EGL +T P  FLTKTY +V+D +TN +VSWSR   SF+VW+P  F+   LPR FKH
Sbjct:     6 PIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKH 65

Query:    94 SNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXXXXXXXXXXXC 153
             +NFSSFVRQLNTYGF+KID +RWEF+NE FL+GERHLLKNIKRRK               
Sbjct:    66 NNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQS------ 119

Query:   154 VELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213
                    L+GE   L RD+  L +ELV+LR++Q++ + YL  ME +L+ TE KQ+ MM+F
Sbjct:   120 -------LEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNF 172

Query:   214 LARAMQNPAFLQQL----VQQKEKRKELEEAMTKKRRRPIDQGPIGAGVAGSSDFGEGMS 269
             L + ++ P+FLQ L    +Q  + R++ +E ++       D G      A   ++G+ + 
Sbjct:   173 LLKKIKKPSFLQSLRKRNLQGIKNREQKQEVISSHGVE--DNGKFVK--AEPEEYGDDID 228

Query:   270 SVKAEPLEYGD 280
                    +YGD
Sbjct:   229 DQCGGVFDYGD 239

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 104/231 (45%), Positives = 146/231 (63%)

Query:    34 PQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKH 93
             P P++ L     PPFL+KT+++VDDP  + V+SW   G SFVVWDP  F+  +LPR+FKH
Sbjct:    42 PMPLDILQGNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKH 101

Query:    94 SNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRGERHLLKNIKRRKXXXXXXXXXXXXXXC 153
             +NFSSFVRQLNTYGFRKID D+WEF+NE FLRG++HLLKNI RR+               
Sbjct:   102 NNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQS 161

Query:   154 VELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSF 213
              +     + GE E+L ++++ LM E+V+L+QQ + T  ++  +  RL+  E++Q+Q++SF
Sbjct:   162 -QGSPTEVGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSF 220

Query:   214 LARAMQNPAFLQQLVQQKEKRKE----LEEAMTK--KRRRPIDQGPIGAGV 258
             LA+  QN  FL++L   K K K     LE+A  K  K  +     P G  V
Sbjct:   221 LAKLFQNRGFLERLKNFKGKEKGGALGLEKARKKFIKHHQQPQDSPTGGEV 271

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUH8	HFA6B_ARATH	No assigned EC number	0.5169	0.9591	0.8669	yes	no
Q6VBB2	HFA2B_ORYSJ	No assigned EC number	0.5549	0.9346	0.9220	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023801001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	2e-55
smart00415	105	smart00415, HSF, heat shock factor	5e-53
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	6e-33

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  176 bits (449), Expect = 2e-55
 Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 2/94 (2%)

Query: 47  PFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTY 106
           PFL K YE+++DP+ ++++SWS  G SF++WDP  F+  +LP++FKH+NFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 107 GFRKIDPDR--WEFSNEGFLRGERHLLKNIKRRK 138
           GF K+  DR  WEF++  F RG++ LL  IKRRK
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  170 bits (433), Expect = 5e-53
 Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 11/105 (10%)

Query: 44  GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQL 103
            PPPFLTK Y +V+DP+T++++SWS  G SFV+WDP  F+ +LLPR+FKH+NFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 104 NTYGFRKIDP-----------DRWEFSNEGFLRGERHLLKNIKRR 137
           N YGFRK+DP           D+WEF+N  F+RG+  LL+NIKR+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  123 bits (311), Expect = 6e-33
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 16/124 (12%)

Query: 30  MMAAPQPMEGLHDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPR 89
           M  + +  +      P  F+ K Y+++++P   +++ WS  G SFV+ DP  F+  +LPR
Sbjct: 1   MSMSSRWSQ------PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPR 54

Query: 90  HFKHSNFSSFVRQLNTYGFRKI----------DPDRWEFSNEGFLRGERHLLKNIKRRKA 139
           +FKH NF+SFVRQLN YGF K+          + + WEF N+ F  G   LLK IKR+KA
Sbjct: 55  YFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKA 114

Query: 140 PSQP 143
           PS  
Sbjct: 115 PSNR 118

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	97.3
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	94.83
smart00413	87	ETS erythroblast transformation specific domain. v	92.26
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.93
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.6
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.57
KOG3806	177	consensus Predicted transcription factor [Transcri	84.08
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.16
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.99
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	80.9

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=6.7e-47  Score=366.73  Aligned_cols=188  Identities=51%  Similarity=0.882  Sum_probs=171.7

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC--CCCceeecC
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID--PDRWEFSNE  121 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~  121 (367)
                      ++++|++|||.||+||+++++|+|+++|+||||||+..|++.+||+||||+||+|||||||+||||||+  +++|||+|+
T Consensus        11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~   90 (304)
T KOG0627|consen   11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP   90 (304)
T ss_pred             CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence            789999999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             CccccccccccccccccCCCCCCC---CCCCC------CCccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694          122 GFLRGERHLLKNIKRRKAPSQPLP---PPQAL------GPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNTRAY  192 (367)
Q Consensus       122 ~F~Rg~~~LL~~IkRk~~~s~~~~---~qq~~------~~~~Ev~~~~l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~  192 (367)
                      +|+||+++||++|+||++......   .....      ..++.....+++.++.+|+++++.||.|+++||++++.++.+
T Consensus        91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~  170 (304)
T KOG0627|consen   91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT  170 (304)
T ss_pred             hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999854432   11111      122334556899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Q 017694          193 LQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQK  231 (367)
Q Consensus       193 l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~  231 (367)
                      ++.+.+++..++.+|++|+.|+++++++|.|+.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999998864

>smart00415 HSF heat shock factor

Probab=100.00  E-value=6e-35  Score=244.41  Aligned_cols=94  Identities=65%  Similarity=1.264  Sum_probs=90.7

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccCC----------
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDP----------  113 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~----------  113 (367)
                      .+|+|+.|||+||+||++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999865          


Q ss_pred             -CCceeecCCccccccccccccccc
Q 017694          114 -DRWEFSNEGFLRGERHLLKNIKRR  137 (367)
Q Consensus       114 -d~~eF~h~~F~Rg~~~LL~~IkRk  137 (367)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999997

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=3.7e-35  Score=243.91  Aligned_cols=93  Identities=54%  Similarity=1.033  Sum_probs=81.6

Q ss_pred             chHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccCCC---------Cce
Q 017694           47 PFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPD---------RWE  117 (367)
Q Consensus        47 ~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~d---------~~e  117 (367)
                      .||.|||+||+||+++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999643         399


Q ss_pred             eecCCccccccccccccccccC
Q 017694          118 FSNEGFLRGERHLLKNIKRRKA  139 (367)
Q Consensus       118 F~h~~F~Rg~~~LL~~IkRk~~  139 (367)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999976

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=2.5e-33  Score=270.56  Aligned_cols=143  Identities=39%  Similarity=0.714  Sum_probs=116.0

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC----------C
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID----------P  113 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~----------~  113 (367)
                      .++.|+.|||.||++|++.++|+|+++|+||||+|+..|.+.|||+||||+||+|||||||+||||||.          .
T Consensus         9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~   88 (282)
T COG5169           9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE   88 (282)
T ss_pred             chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence            467999999999999999999999999999999999999999999999999999999999999999996          1


Q ss_pred             CCceeecCCccccccccccccccccCCCCCCCCCCCCCCc---cccCC-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017694          114 DRWEFSNEGFLRGERHLLKNIKRRKAPSQPLPPPQALGPC---VELGR-----FGLDGEFERLIRDKQFLMMELVKLRQQ  185 (367)
Q Consensus       114 d~~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~qq~~~~~---~Ev~~-----~~l~~Ei~~LKrd~~~L~~El~~LRQq  185 (367)
                      ..|+|.|++|++|..++|++|+|++.++...........|   .++..     ..+..++..|...++.++..+..|+.-
T Consensus        89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~  168 (282)
T COG5169          89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEY  168 (282)
T ss_pred             hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccch
Confidence            2499999999999999999999988875433211111111   12222     245667788888888888777777654


Q ss_pred             H
Q 017694          186 Q  186 (367)
Q Consensus       186 q  186 (367)
                      +
T Consensus       169 ~  169 (282)
T COG5169         169 N  169 (282)
T ss_pred             h
Confidence            3

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=97.30  E-value=0.00093  Score=58.06  Aligned_cols=79  Identities=24%  Similarity=0.363  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 017694          173 QFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQG  252 (367)
Q Consensus       173 ~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~q~~~~k~l~~~~~kKRr~~~~~~  252 (367)
                      +..+.||..+++.+..+...+.+|.+++..+++.+++|..+-|+++++   |...+.+-+.+|+|.+++.++++..+-..
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~iip~   78 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQIIPS   78 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT----------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCcCCC
Confidence            456789999999999999999999999999999999999999999997   77788877778999998888776544433


Q ss_pred             CC
Q 017694          253 PI  254 (367)
Q Consensus       253 ~~  254 (367)
                      |.
T Consensus        79 ~~   80 (121)
T PF03310_consen   79 PE   80 (121)
T ss_dssp             --
T ss_pred             CC
Confidence            33

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=94.83  E-value=0.0086  Score=49.06  Aligned_cols=59  Identities=22%  Similarity=0.463  Sum_probs=45.6

Q ss_pred             HHHHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhccc-CCCCCCCCcchHHhhhcccc
Q 017694           49 LTKTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLL-PRHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        49 l~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~~Fkh~nfsSFvRQLN~YG  107 (367)
                      ..=|.++|.|++..++|+|.. .+.-|.|.||+++++.-- -+--..-+|.++-|-|..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence            344678899999999999999 999999999999986321 11223457899999998874

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=92.26  E-value=0.1  Score=43.22  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=43.9

Q ss_pred             HHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694           51 KTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        51 KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG  107 (367)
                      =|.++|.||++.++|+|.. ++.-|.+.|+++.++.--. +-=..-||..+-|-|..|-
T Consensus         7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998 6889999999887764221 1113467888888888773

variation of the helix-turn-helix motif

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.93  E-value=4.5  Score=32.26  Aligned_cols=43  Identities=23%  Similarity=0.200  Sum_probs=23.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694          161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGT  203 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~  203 (367)
                      |..+++.||.++..|..|...|+++.+.++....+-.+||+++
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666655555555555555555555455555555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.60  E-value=4.1  Score=45.21  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=58.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH--HHHHHHHHH
Q 017694          161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQ--QKEKRKELE  238 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~qnp~fl~qLv~--q~~~~k~l~  238 (367)
                      +...+..|+..++.-..|+..++++...++.....+.+|+..+..+|+.++.-+.++++....-.-.+.  .++++++|+
T Consensus       563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~  642 (717)
T PF10168_consen  563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELE  642 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            455567788888888888888999998898888999999999999999999988887775432111111  344466665


Q ss_pred             H
Q 017694          239 E  239 (367)
Q Consensus       239 ~  239 (367)
                      .
T Consensus       643 ~  643 (717)
T PF10168_consen  643 R  643 (717)
T ss_pred             H
Confidence            3

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.57  E-value=3.7  Score=32.33  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 017694          185 QQQNTRAYLQAMELRLEGTE  204 (367)
Q Consensus       185 qqq~~~~~l~~Me~RL~~~E  204 (367)
                      +......++.+|-.||+.+|
T Consensus        43 kne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449        43 KNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHhhhhhc
Confidence            33444445555555555554

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=84.08  E-value=1.2  Score=41.38  Aligned_cols=63  Identities=21%  Similarity=0.446  Sum_probs=46.6

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccCC-CCCCCCcchHHhhhccc
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLPR-HFKHSNFSSFVRQLNTY  106 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~Y  106 (367)
                      +.-.-..=|-++|+|++..++|+|.. +|--|.+.||++-++.---+ -=.+-||.-.-|-|..|
T Consensus        67 g~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   67 GQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             chhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            33445555667889999999999999 78899999999998754222 12246777777887776

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.16  E-value=6  Score=32.29  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 017694          161 LDGEFERLIRDKQFLMMELVK-------LRQQQQNTRAYLQAMELRLEG  202 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~-------LRQqqq~~~~~l~~Me~RL~~  202 (367)
                      |.-||+.||.++..|..|+..       |+++.+.++.+..+-++||++
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777777777777777666       444444444444455555544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.99  E-value=11  Score=36.06  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017694          161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRLEGTEKKQQQMMSFLARAMQ  219 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL~~~E~kQqqmm~FLak~~q  219 (367)
                      +..++..|+++.+.|...+.++.....+.+.++..+++++..++...++|..+|.+++.
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666667777777888888888888888777776554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=80.90  E-value=6.9  Score=28.49  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017694          161 LDGEFERLIRDKQFLMMELVKLRQQQQNTRAYLQAMELRL  200 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~LRQqqq~~~~~l~~Me~RL  200 (367)
                      ++.+.+.||+....|..+..+|.++.+.+.+++..+...+
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556677777777777777777777777777776665554

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		7e-21
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		1e-18
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		4e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		7e-14
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		9e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		1e-13
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-13
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-13

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 11/103 (10%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P FLTK + +V DP+T+ ++ WS  G SF V+D   F+  +LP++FKH+N +SFVRQLN 
Sbjct: 18  PAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNM 77
Query: 106 YGFRKI-----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
           YGFRK+           + D  EF +  FLRG+  LL+NIKR+
Sbjct: 78  YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 10/105 (9%)
Query: 43  TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQ 102
           +G P FL K + +VDD +TN ++ W++ G SFV+ +   F+  LLP ++KH+N +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 103 LNTYGFRKI----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
           LN YGF KI          D D  EFS+  F R    LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K + MV+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQLN 
Sbjct: 13  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 73  YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K + MV+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K + MV+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K +  V+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQLN 
Sbjct: 3   PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K + MV+D +  + + WS  G S VV +   F   +L ++FKHSNF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 46  PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNT 105
           P F+ K + MV+D +  + + WS  G S VV +   F   +L ++FKHSNF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 106 YGFRKI-----------DPDRWEFSNE 121
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1hks_A	106	Heat-shock transcription factor; transcription reg	7e-57
2ldu_A	125	Heat shock factor protein 1; structural genomics,	9e-56
3hts_B	102	Heat shock transcription factor; transcription reg	1e-46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  179 bits (457), Expect = 7e-57
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 43  TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQ 102
           +G P FL K + +VDD +TN ++ W++ G SFV+ +   F+  LLP ++KH+N +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 103 LNTYGFRKI----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
           LN YGF KI          D D  EFS+  F R    LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  177 bits (451), Expect = 9e-56
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 14/120 (11%)

Query: 36  PMEGLHDTGP---PPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFK 92
                H  GP   P FLTK + +V DP+T+ ++ WS  G SF V+D   F+  +LP++FK
Sbjct: 5   HHHHSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFK 64

Query: 93  HSNFSSFVRQLNTYGFRKI-----------DPDRWEFSNEGFLRGERHLLKNIKRRKAPS 141
           H+N +SFVRQLN YGFRK+           + D  EF +  FLRG+  LL+NIKR+    
Sbjct: 65  HNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  153 bits (389), Expect = 1e-46
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 43  TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQ 102
              P F+ K + MV+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQ
Sbjct: 10  MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQ 69

Query: 103 LNTYGFRKI-----------DPDRWEFSNEGF 123
           LN YG+ K+           +  RWEF NE  
Sbjct: 70  LNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 33/272 (12%), Positives = 71/272 (26%), Gaps = 74/272 (27%)

Query: 35  QPMEGLHDTGPPPFLTKTYEMVDDP-NTNEVVSWSRGGVSFVVWDPHAFSTSLL------ 87
           + ++ L     P + +++    +     + + +  R     +   P+     LL      
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYE--NCLLVLLNVQ 254

Query: 88  -PRHFKHSNFS----------SFVRQLNTYGFRKIDPDRWEFSNEGFLRGE-RHLLKNIK 135
             + +   N S               L+      I     +  +      E + LL    
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYL 311

Query: 136 RRKAPSQPLPP------PQALGPCVELGRFGLDGEFERLIRDKQFLMMELVKLRQQQQNT 189
             +   Q LP       P+ L    E  R       + L     +  +   KL    +++
Sbjct: 312 DCRP--QDLPREVLTTNPRRLSIIAESIR-------DGLATWDNWKHVNCDKLTTIIESS 362

Query: 190 RAYLQAMELR------------------------LEGTEKKQQQMMSFLAR----AMQNP 221
              L+  E R                         +  +     +++ L +      Q  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 222 AFLQQL--VQQKEKRKELEEAMTKKRRRPIDQ 251
                +  +  + K K   E      R  +D 
Sbjct: 423 ESTISIPSIYLELKVKLENEY--ALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 47/301 (15%), Positives = 95/301 (31%), Gaps = 73/301 (24%)

Query: 90  HFKHSNFSSFVRQLNTYGFRKIDPDRWEFSNEGFLRG---------ERHLLKNIKRRKAP 140
           H  H +F +   Q   Y ++ I      F  + F+            + +L   +     
Sbjct: 3   HHHHMDFETGEHQ---YQYKDILSV---FE-DAFVDNFDCKDVQDMPKSILSKEEIDHII 55

Query: 141 SQPLPPPQA--LGPCVELGRFGLDGEF--ERLIRDKQFLMMEL-VKLRQQQQNTRAYLQA 195
                      L   +   +  +  +F  E L  + +FLM  +  + RQ    TR Y++ 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 196 MELRLEGTEKKQQQMMSFLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRP--IDQGP 253
            + RL                   N  F +  V + +   +L +A+ + R     +  G 
Sbjct: 116 RD-RLYND----------------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 254 IGAG-------VAGSSDFGEGMS------SVKAEPLEYGDYGFEMSELEALALEMQGYGR 300
           +G+G       V  S      M       ++K            +  L+ L  ++     
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQIDPNWT 214

Query: 301 TRSEQ--EGPQELEPPESGARELDEGFWEELLNERFEGELDMPGSEVGDD-EDVTVLIDR 357
           +RS+        +   ++  R L       L ++ +E  L      V  + ++     + 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRL-------LKSKPYENCLL-----VLLNVQNAKA-WNA 261

Query: 358 F 358
           F
Sbjct: 262 F 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	88.16
1awc_A	110	Protein (GA binding protein alpha); complex (trans	87.67
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	87.29
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	85.79
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	85.54
4avp_A	106	ETS translocation variant 1; transcription, transc	84.63
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	83.79
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.25
2dao_A	118	Transcription factor ETV6; ETS domain, structural	80.39

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=2.9e-40  Score=276.31  Aligned_cols=95  Identities=46%  Similarity=0.856  Sum_probs=91.7

Q ss_pred             CCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC----------
Q 017694           43 TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID----------  112 (367)
Q Consensus        43 ~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~----------  112 (367)
                      +++|+||.|||+||+||+++++|+|+++|+||||+|+.+|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            5788999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceeecCCccccccccccccccc
Q 017694          113 PDRWEFSNEGFLRGERHLLKNIKRR  137 (367)
Q Consensus       113 ~d~~eF~h~~F~Rg~~~LL~~IkRk  137 (367)
                      ++.|+|+|++|+||+++||.+||||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            5789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=278.53  Aligned_cols=99  Identities=48%  Similarity=0.874  Sum_probs=94.6

Q ss_pred             CCCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC---------
Q 017694           42 DTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID---------  112 (367)
Q Consensus        42 ~~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~---------  112 (367)
                      ..+.|+||.|||+||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.         
T Consensus        14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~   93 (125)
T 2ldu_A           14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVK   93 (125)
T ss_dssp             SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSS
T ss_pred             CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999983         


Q ss_pred             --CCCceeecCCccccccccccccccccCC
Q 017694          113 --PDRWEFSNEGFLRGERHLLKNIKRRKAP  140 (367)
Q Consensus       113 --~d~~eF~h~~F~Rg~~~LL~~IkRk~~~  140 (367)
                        ++.|+|+|++|+||+++||.+|+||++.
T Consensus        94 ~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           94 PERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             CSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             CCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence              4789999999999999999999999886

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=2.2e-33  Score=233.85  Aligned_cols=82  Identities=45%  Similarity=0.848  Sum_probs=77.3

Q ss_pred             CCCCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC--------
Q 017694           41 HDTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID--------  112 (367)
Q Consensus        41 ~~~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~--------  112 (367)
                      ....+|+||.|||.||+||+++++|+|+++|++|||+|+..|+++|||+||||+||+||+||||+|||||+.        
T Consensus         8 ~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~   87 (102)
T 3hts_B            8 GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSML   87 (102)
T ss_dssp             --CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC--------
T ss_pred             CCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCccc
Confidence            346789999999999999999999999999999999999999999999999999999999999999999996        


Q ss_pred             ---CCCceeecCC
Q 017694          113 ---PDRWEFSNEG  122 (367)
Q Consensus       113 ---~d~~eF~h~~  122 (367)
                         +++|||+|++
T Consensus        88 ~~~~~~wEF~n~~  100 (102)
T 3hts_B           88 SNNDSRWEFENER  100 (102)
T ss_dssp             -CCSCCEEEEECC
T ss_pred             CCCcCCeEecCCC
Confidence               7899999986

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=88.16  E-value=0.045  Score=47.96  Aligned_cols=79  Identities=22%  Similarity=0.376  Sum_probs=59.3

Q ss_pred             CCCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCC-CCCCCCcchHHhhhcccccc----ccCCCCc
Q 017694           42 DTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPR-HFKHSNFSSFVRQLNTYGFR----KIDPDRW  116 (367)
Q Consensus        42 ~~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~YGFr----Kv~~d~~  116 (367)
                      ..++.....=|.++|.|++..++|+|...+.-|.+.|+++.++..-.+ -=..-||...-|-|..|-=+    ||...+.
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  115 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  115 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence            456777888889999999999999999999999999999888743221 11356788999999888544    4555556


Q ss_pred             eeec
Q 017694          117 EFSN  120 (367)
Q Consensus       117 eF~h  120 (367)
                      .|..
T Consensus       116 vY~F  119 (146)
T 1gvj_A          116 VYRF  119 (146)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6553

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=87.67  E-value=0.17  Score=42.38  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=44.1

Q ss_pred             HHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCC-CCCCCCcchHHhhhcccc
Q 017694           51 KTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPR-HFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        51 KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~YG  107 (367)
                      =|.++|.||++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|.
T Consensus         6 FLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   63 (110)
T 1awc_A            6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence            367889999999999999988899999998887643221 113457888888888874

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=87.29  E-value=0.24  Score=40.68  Aligned_cols=64  Identities=17%  Similarity=0.310  Sum_probs=47.7

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG  107 (367)
                      +......=|.++|+|++..++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         4 g~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             CceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            344555566778899999999999998889999999888763321 1113567888888888874

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=85.79  E-value=0.29  Score=39.78  Aligned_cols=76  Identities=11%  Similarity=0.296  Sum_probs=54.9

Q ss_pred             CCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhccccc----cccCCCCceee
Q 017694           45 PPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYGF----RKIDPDRWEFS  119 (367)
Q Consensus        45 ~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~d~~eF~  119 (367)
                      ......=|.++|.||+..++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-=    +||...+..|.
T Consensus         4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            34555667889999999999999998789999999888774322 11145789999999988842    24454555555


Q ss_pred             c
Q 017694          120 N  120 (367)
Q Consensus       120 h  120 (367)
                      .
T Consensus        84 F   84 (93)
T 1bc8_C           84 F   84 (93)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=85.54  E-value=0.32  Score=40.17  Aligned_cols=76  Identities=18%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             CCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhccccc----cccCCCCcee
Q 017694           44 GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYGF----RKIDPDRWEF  118 (367)
Q Consensus        44 ~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~d~~eF  118 (367)
                      +.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.--. +-=..-||..+-|-|..|-=    +||...+..|
T Consensus         6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY   85 (102)
T 2ypr_A            6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY   85 (102)
T ss_dssp             SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred             CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence            344555667788999999999999988899999999888863211 11145789999999988743    3555555555


Q ss_pred             e
Q 017694          119 S  119 (367)
Q Consensus       119 ~  119 (367)
                      .
T Consensus        86 k   86 (102)
T 2ypr_A           86 R   86 (102)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=84.63  E-value=0.41  Score=39.80  Aligned_cols=77  Identities=18%  Similarity=0.417  Sum_probs=55.7

Q ss_pred             CCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhccccc----cccCCCCce
Q 017694           43 TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYGF----RKIDPDRWE  117 (367)
Q Consensus        43 ~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~d~~e  117 (367)
                      .|.-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.--. +-=..-||..+-|-|..|-=    +||...+..
T Consensus         9 ~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~v   88 (106)
T 4avp_A            9 RGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYV   88 (106)
T ss_dssp             --CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSE
T ss_pred             CCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEE
Confidence            4455666777889999999999999998889999999888863321 11145789999999988742    355555655


Q ss_pred             ee
Q 017694          118 FS  119 (367)
Q Consensus       118 F~  119 (367)
                      |.
T Consensus        89 Yk   90 (106)
T 4avp_A           89 YK   90 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=83.79  E-value=0.11  Score=46.61  Aligned_cols=78  Identities=22%  Similarity=0.402  Sum_probs=57.4

Q ss_pred             CCCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCC-CCCCCCcchHHhhhcccccc----ccCCCCc
Q 017694           42 DTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPR-HFKHSNFSSFVRQLNTYGFR----KIDPDRW  116 (367)
Q Consensus        42 ~~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~YGFr----Kv~~d~~  116 (367)
                      ..++.....=|.++|.|++..++|+|...+.-|.+.|+++.++..-.+ -=..-||...-|-|..|-=+    ||...+.
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  140 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  140 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence            345667777788999999999999999999999999998888743221 11346788888999888544    4444555


Q ss_pred             eee
Q 017694          117 EFS  119 (367)
Q Consensus       117 eF~  119 (367)
                      .|.
T Consensus       141 vY~  143 (171)
T 2nny_A          141 VYR  143 (171)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.25  E-value=9  Score=30.31  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=14.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Q 017694          161 LDGEFERLIRDKQFLMMELVKLRQ  184 (367)
Q Consensus       161 l~~Ei~~LKrd~~~L~~El~~LRQ  184 (367)
                      +..||+.||.++..|..|...++.
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666677776666666666433

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.39  E-value=0.54  Score=39.79  Aligned_cols=77  Identities=18%  Similarity=0.369  Sum_probs=55.3

Q ss_pred             CCCCchHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhccc---c-ccccCCCCc
Q 017694           43 TGPPPFLTKTYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTY---G-FRKIDPDRW  116 (367)
Q Consensus        43 ~~~~~Fl~KLy~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~Y---G-FrKv~~d~~  116 (367)
                      .+......=|.++|.||++.++|+|.. ++.-|.+.|++..++..=. +-=..-||...-|-|..|   | -+|+...+.
T Consensus         6 ~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~   85 (118)
T 2dao_A            6 SGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRL   85 (118)
T ss_dssp             CCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSS
T ss_pred             CcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeE
Confidence            345566677888999999999999987 4568999999887764322 111357899999999888   3 235555555


Q ss_pred             eee
Q 017694          117 EFS  119 (367)
Q Consensus       117 eF~  119 (367)
                      .|.
T Consensus        86 vY~   88 (118)
T 2dao_A           86 LFR   88 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-44
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	2e-38

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  145 bits (368), Expect = 4e-44
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 43  TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQ 102
           +G P FL K + +VDD +TN ++ W++ G SFV+ +   F+  LLP ++KH+N +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 103 LNTYGFRKI----------DPDRWEFSNEGFLRGERHLLKNIKRR 137
           LN YGF KI          D D  EFS+  F R    LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  130 bits (329), Expect = 2e-38
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 11/89 (12%)

Query: 44  GPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQL 103
             P F+ K + MV+D +  + + WS  G S VV +   F   +LP++FKHSNF+SFVRQL
Sbjct: 1   ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 104 NTYGFRKI-----------DPDRWEFSNE 121
           N YG+ K+           +  RWEF NE
Sbjct: 61  NMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	91.37
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	90.55
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	90.18
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	87.88
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	86.52
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	84.59

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=6.8e-37  Score=253.68  Aligned_cols=95  Identities=46%  Similarity=0.856  Sum_probs=90.7

Q ss_pred             CCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC----------
Q 017694           43 TGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID----------  112 (367)
Q Consensus        43 ~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~----------  112 (367)
                      +++|+||.|||+||+||++++||+|+++|++|+|+|+..|+++|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999983          


Q ss_pred             CCCceeecCCccccccccccccccc
Q 017694          113 PDRWEFSNEGFLRGERHLLKNIKRR  137 (367)
Q Consensus       113 ~d~~eF~h~~F~Rg~~~LL~~IkRk  137 (367)
                      ++.++|+|++|+||+++||..||||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            4578999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=5.6e-31  Score=213.62  Aligned_cols=79  Identities=47%  Similarity=0.884  Sum_probs=74.3

Q ss_pred             CCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccC-----------C
Q 017694           45 PPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKID-----------P  113 (367)
Q Consensus        45 ~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~-----------~  113 (367)
                      .|+||.|||+||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999983           4


Q ss_pred             CCceeecCCc
Q 017694          114 DRWEFSNEGF  123 (367)
Q Consensus       114 d~~eF~h~~F  123 (367)
                      +.|||+|+.+
T Consensus        82 ~~~eF~h~~~   91 (92)
T d2htsa_          82 SRWEFENERH   91 (92)
T ss_dssp             CCEEEEESCC
T ss_pred             CCEEEecCCC
Confidence            6799999843

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=91.37  E-value=0.029  Score=45.27  Aligned_cols=75  Identities=16%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             CCchHHHHHhhcc----CCCCCCc--eEEcCCCCeEEEeCCccchhcccCCCCCCCCcchHHhhhccccccccCC---CC
Q 017694           45 PPPFLTKTYEMVD----DPNTNEV--VSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDP---DR  115 (367)
Q Consensus        45 ~~~Fl~KLy~mv~----dp~~~~i--IsWs~~G~sFvI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~---d~  115 (367)
                      ...|..|||.+|.    +|.....  |.|..++. |.| +...|+..+==+      -.|.-.-|..|||..+.+   +.
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lLgiK------~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVMGIK------LNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHHTCC------HHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHHCCC------hhhhcCcccccCceeeecCCCcc
Confidence            3589999999996    4443222  68999986 777 889998754212      244556677899998854   34


Q ss_pred             ceeecCCccccc
Q 017694          116 WEFSNEGFLRGE  127 (367)
Q Consensus       116 ~eF~h~~F~Rg~  127 (367)
                      |.+.++.|.|..
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            667899998764

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.55  E-value=0.037  Score=44.38  Aligned_cols=56  Identities=18%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694           52 TYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        52 Ly~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG  107 (367)
                      |.++|.||+..++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            5788999999999999998889999999988763311 1113467888888888873

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.036  Score=43.64  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             CCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694           45 PPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        45 ~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG  107 (367)
                      ...-..=|.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-
T Consensus         5 ~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            34445556788999999999999888888999999888764311 1112357888888888763

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.041  Score=42.29  Aligned_cols=56  Identities=16%  Similarity=0.356  Sum_probs=42.6

Q ss_pred             HHhhccCCCCCCceEEcC-CCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc
Q 017694           52 TYEMVDDPNTNEVVSWSR-GGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG  107 (367)
Q Consensus        52 Ly~mv~dp~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG  107 (367)
                      |.++|+|+++.++|+|.. ++.-|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            456788999999999998 6889999999888874311 1112467889999888773

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.072  Score=44.39  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=55.3

Q ss_pred             CCCCCchHHHHHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhccccc----cccCCCCc
Q 017694           42 DTGPPPFLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYGF----RKIDPDRW  116 (367)
Q Consensus        42 ~~~~~~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~d~~  116 (367)
                      ..+...--.=|.++|.|+++.++|+|...+..|.+.|+++.++.--. +-=..-||...-|-|..|-=    +||...++
T Consensus        36 ~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl  115 (142)
T d1gvja_          36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  115 (142)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred             CCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEE
Confidence            34555566677889999999999999998888999999998864311 11124678888898887742    24444555


Q ss_pred             eee
Q 017694          117 EFS  119 (367)
Q Consensus       117 eF~  119 (367)
                      .|.
T Consensus       116 ~Yk  118 (142)
T d1gvja_         116 VYR  118 (142)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            553

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=0.083  Score=44.61  Aligned_cols=68  Identities=12%  Similarity=0.371  Sum_probs=51.6

Q ss_pred             HHhhccCCCCCCceEEcCCCCeEEEeCCccchhcccC-CCCCCCCcchHHhhhcccc----ccccCCCCceee
Q 017694           52 TYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLP-RHFKHSNFSSFVRQLNTYG----FRKIDPDRWEFS  119 (367)
Q Consensus        52 Ly~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG----FrKv~~d~~eF~  119 (367)
                      |.++|.||++.++|+|...+.-|.+.|+++.++..-. +-=..-||...-|-|..|-    .+||...++.|.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            5678899999999999998889999999998874321 1113478999999998874    345566677765