Citrus Sinensis ID: 017717

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQQ
cccccccccccccHHHHcccccccHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccHHHHHHHcHHHHHHHcHHHHHHHcccccEEEEEccccccEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccc
cccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEEccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEcccccEEEEEEEEccccccccEEEEEEEcccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
msadkdnfnvTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGvvegapnevamdqeedkateekgvpdfwltamknndvlseeiTERDEGALKFLKDikwfriddpkgfklefyfdpnpyfknsvltktyhmidedepiLEKAIGteiewypgkcltqkllkkkpkkgsknakpitkteecesffnffnppqvpeddedidEDTAEELQNQMEqdydigstirdkiiphavswftgeaiqeeeieldddeddddidededdegdddedededdeedeeddegktkkkksgrqqagdaqqgerppeckqq
msadkdnfnvtdlrasldegaRADLVGVLKNKLQNlagqhsdvlekltpaVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAmdqeedkateekgvpdfwltAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCltqkllkkkpkkgsknakpitkteecESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEeeieldddeddddidededdegdddedededdeedeeddegktkkkksgrqqagdaqqgerppeckqq
MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGkcltqkllkkkpkkgsknakPITKTEECESFFNFFNPPQVPeddedidedtaeeLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQeeeieldddeddddidededdegdddedededdeedeeddeGKTKKKKSGRQQAGDAQQGERPPECKQQ
*********************RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQ***DELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEG********************PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLL**********************FFNFF***************************YDIGSTIRDKIIPHAVSWFTGEAI**********************************************************************
************************************************PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLT*********************EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE**************************************************************C***
********NVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM**********KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLK************ITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIE****************************************************************
*******FNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGA*N*************EKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE********************************************************************
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MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVxxxxxxxxxxxxxxxxxxxxxLEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
P28656391 Nucleosome assembly prote yes no 0.716 0.672 0.394 4e-46
A6H767391 Nucleosome assembly prote yes no 0.716 0.672 0.387 8e-46
Q5R4D4391 Nucleosome assembly prote yes no 0.719 0.675 0.392 9e-46
P55209391 Nucleosome assembly prote yes no 0.716 0.672 0.394 1e-45
Q78ZA7375 Nucleosome assembly prote no no 0.732 0.717 0.377 4e-45
Q28EB4393 Nucleosome assembly prote yes no 0.719 0.671 0.385 5e-45
P78920379 Putative nucleosome assem yes no 0.831 0.804 0.356 7e-45
Q99733375 Nucleosome assembly prote no no 0.741 0.725 0.380 8e-45
Q9Z2G8390 Nucleosome assembly prote yes no 0.713 0.671 0.387 2e-44
Q7ZY81393 Nucleosome assembly prote N/A no 0.719 0.671 0.385 4e-44
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 171/302 (56%), Gaps = 39/302 (12%)

Query: 25  LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84
           ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY 
Sbjct: 48  ILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYA 107

Query: 85  KLYQPMYTKRYEIVNGVVEGAPNEVAMDQ-EEDKATEE-------------------KGV 124
            LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+
Sbjct: 108 VLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGI 167

Query: 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDD---PKGFKLEFYFDPNPYFKN 181
           P+FWLT  KN D+LS+ + E DE  LK LKDIK  +  D   P  F LEF+F+PN YF N
Sbjct: 168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIK-VKFSDAGQPMSFVLEFHFEPNDYFTN 226

Query: 182 SVLTKTYHMIDE---------DEPILEKAIGTEIEWYPGKCLT-QKLLKKKPKKGSKNAK 231
            VLTKTY M  E         D P +    G +I+W  GK +T + + KK+  KG    +
Sbjct: 227 EVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVR 286

Query: 232 PITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSW 291
            +TKT   +SFFNFF PP+VPE+  D+D+D AE +   +  D++IG  +R++IIP +V +
Sbjct: 287 TVTKTVSNDSFFNFFAPPEVPENG-DLDDD-AEAI---LAADFEIGHFLRERIIPRSVLY 341

Query: 292 FT 293
           FT
Sbjct: 342 FT 343
May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.
Mus musculus (taxid: 10090)
>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1 Back     alignment and function description
>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1 Back     alignment and function description
>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|P78920|YGNB_SCHPO Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.11c PE=2 SV=2 Back     alignment and function description
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY81|NPL1B_XENLA Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
225444889368 PREDICTED: nucleosome assembly protein 1 0.989 0.986 0.795 1e-146
297738653386 unnamed protein product [Vitis vinifera] 0.989 0.940 0.758 1e-143
372477765377 nucleosome assembly protein [Malus x dom 1.0 0.973 0.732 1e-140
359482848381 PREDICTED: nucleosome assembly protein 1 1.0 0.963 0.761 1e-138
356530387365 PREDICTED: nucleosome assembly protein 1 0.980 0.986 0.733 1e-137
356530381359 PREDICTED: nucleosome assembly protein 1 0.972 0.994 0.737 1e-136
356530385369 PREDICTED: nucleosome assembly protein 1 0.980 0.975 0.723 1e-136
224087993378 nucleosome/chromatin assembly factor gro 1.0 0.970 0.777 1e-135
45433315377 nucleosome assembly protein 1-like prote 1.0 0.973 0.771 1e-134
255647946370 unknown [Glycine max] 0.991 0.983 0.774 1e-133
>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 296/372 (79%), Positives = 328/372 (88%), Gaps = 9/372 (2%)

Query: 1   MSADKDNFNVTDLRASL---DEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEV 57
           MS  K+ FN+ DL +SL   +   RADLV  LKNKLQNLAGQHSDVLE LTP VRKRVE 
Sbjct: 1   MSNSKETFNMADLGSSLPALNAEDRADLVNALKNKLQNLAGQHSDVLENLTPKVRKRVET 60

Query: 58  LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE--GAPNEVAMDQEE 115
           LREIQ +HDELEAKFFEERAALEAKYQKLYQP+Y+KRY+IVNGVVE  G  NEV MDQE 
Sbjct: 61  LREIQGQHDELEAKFFEERAALEAKYQKLYQPLYSKRYDIVNGVVEVDGVTNEVTMDQE- 119

Query: 116 DKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDP 175
           DKA EEKGVPDFWLTAMK N+VL+EEI+ERDEGALK++KDIKW RID+PKGFKLEF+FD 
Sbjct: 120 DKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFDT 178

Query: 176 NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITK 235
           NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEW+PGKCLTQKLLKKKP+KGSKNAKPITK
Sbjct: 179 NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAKPITK 238

Query: 236 TEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGE 295
           TE CESFFNFF+PPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGE
Sbjct: 239 TESCESFFNFFSPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGE 298

Query: 296 AIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGRQQAGDA 355
           A Q +  E  D EDD+D D DEDD+ D+DE+ED+++++DE++++ K  KKKSGR Q GD 
Sbjct: 299 AAQGD--EFGDMEDDEDEDIDEDDDEDEDEEEDDEEDDDEDEEDSKAVKKKSGRAQVGDG 356

Query: 356 QQGERPPECKQQ 367
           QQGERPPECKQQ
Sbjct: 357 QQGERPPECKQQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica] Back     alignment and taxonomy information
>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530387|ref|XP_003533763.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|356530381|ref|XP_003533760.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356530385|ref|XP_003533762.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|45433315|emb|CAD27461.1| nucleosome assembly protein 1-like protein 2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|255647946|gb|ACU24430.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2164595374 NAP1;3 "AT5G56950" [Arabidopsi 0.811 0.796 0.703 2.2e-120
TAIR|locus:2050424379 NAP1;2 "AT2G19480" [Arabidopsi 0.811 0.786 0.703 1.5e-119
TAIR|locus:2120785372 NAP1;1 "AT4G26110" [Arabidopsi 0.811 0.801 0.681 6.1e-114
UNIPROTKB|B3KV44323 NAP1L1 "cDNA FLJ16112 fis, clo 0.708 0.804 0.371 6.7e-43
POMBASE|SPBC2D10.11c379 nap2 "nucleosome assembly prot 0.730 0.707 0.332 6.8e-40
ZFIN|ZDB-GENE-030131-9099349 nap1l4a "nucleosome assembly p 0.504 0.530 0.334 5.7e-38
CGD|CAL0006351435 orf19.7501 [Candida albicans ( 0.643 0.542 0.304 2.4e-35
UNIPROTKB|E1BZS2393 NAP1L1 "Uncharacterized protei 0.653 0.610 0.329 2.7e-34
MGI|MGI:1859565544 Nap1l3 "nucleosome assembly pr 0.471 0.318 0.321 4.1e-34
UNIPROTKB|Q7ZY81393 nap1l1-b "Nucleosome assembly 0.653 0.610 0.340 4.4e-34
TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1108 (395.1 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
 Identities = 211/300 (70%), Positives = 238/300 (79%)

Query:     1 MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLRE 60
             MS DKD+FNV+DL ++L +  RA LV  LKNKLQNLAGQHSDVLE LTP +R+RVEVLRE
Sbjct:     1 MSNDKDSFNVSDLTSALKDEDRAGLVNALKNKLQNLAGQHSDVLENLTPKIRRRVEVLRE 60

Query:    61 IQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV--VEGAPNEVAMDQEEDKA 118
             IQ +HDE+E KF EERAALEAKYQKLYQP+Y KRYEIVNG   VEGAP +  MDQ ++K 
Sbjct:    61 IQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATEVEGAPEDAKMDQGDEKT 120

Query:   119 TEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPY 178
              EEKGVP FWLTA+KNNDV+SEEITERDEGAL +LKDIKW +I++PKGFKLEF+FD NPY
Sbjct:   121 AEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPY 180

Query:   179 FKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXXXXPITKTEE 238
             FKN++LTK YHMIDEDEP+LEKAIGTEI+WYPG                    PITKTE+
Sbjct:   181 FKNTLLTKAYHMIDEDEPLLEKAIGTEIDWYPGKCLTQKILKKKPKKGAKNAKPITKTED 240

Query:   239 CESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 298
             CESFFNFFNPPQVP             LQN MEQDYDIGSTIR+KIIPHAVSWFTGEAI+
Sbjct:   241 CESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKIIPHAVSWFTGEAIE 300
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006334 "nucleosome assembly" evidence=IEA;ISS
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006281 "DNA repair" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B3KV44 NAP1L1 "cDNA FLJ16112 fis, clone 3NB692001853, highly similar to NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPBC2D10.11c nap2 "nucleosome assembly protein Nap2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9099 nap1l4a "nucleosome assembly protein 1-like 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0006351 orf19.7501 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZS2 NAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1859565 Nap1l3 "nucleosome assembly protein 1-like 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZY81 nap1l1-b "Nucleosome assembly protein 1-like 1-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78920YGNB_SCHPONo assigned EC number0.35670.83100.8047yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034186001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   ••   0.465
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
pfam00956236 pfam00956, NAP, Nucleosome assembly protein (NAP) 1e-101
PTZ00007337 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr 9e-70
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-07
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 2e-07
pfam02724 583 pfam02724, CDC45, CDC45-like protein 1e-06
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-06
pfam03344 715 pfam03344, Daxx, Daxx Family 6e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 7e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 8e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 8e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 1e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-05
PRK05658 619 PRK05658, PRK05658, RNA polymerase sigma factor Rp 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-05
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 4e-05
pfam04147 809 pfam04147, Nop14, Nop14-like family 5e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 5e-05
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 6e-05
pfam00183 529 pfam00183, HSP90, Hsp90 protein 7e-05
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 7e-05
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 7e-05
pfam05285 317 pfam05285, SDA1, SDA1 1e-04
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-04
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 2e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 2e-04
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 2e-04
PTZ00248319 PTZ00248, PTZ00248, eukaryotic translation initiat 2e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 3e-04
pfam05642 727 pfam05642, Sporozoite_P67, Sporozoite P67 surface 3e-04
pfam06524314 pfam06524, NOA36, NOA36 protein 3e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 5e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 6e-04
pfam05285 317 pfam05285, SDA1, SDA1 6e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 6e-04
PLN00151 852 PLN00151, PLN00151, potassium transporter; Provisi 6e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 7e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 8e-04
pfam05786 719 pfam05786, Cnd2, Condensin complex subunit 2 9e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.001
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.001
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.001
PRK02363129 PRK02363, PRK02363, DNA-directed RNA polymerase su 0.001
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.002
pfam11702 509 pfam11702, DUF3295, Protein of unknown function (D 0.002
pfam09184285 pfam09184, PPP4R2, PPP4R2 0.002
pfam04889241 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont 0.002
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.003
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.003
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.003
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.004
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.004
pfam08553 794 pfam08553, VID27, VID27 cytoplasmic protein 0.004
COG5177 769 COG5177, COG5177, Uncharacterized conserved protei 0.004
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 0.004
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 0.004
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP) Back     alignment and domain information 
 Score =  298 bits (764), Expect = e-101
 Identities = 136/247 (55%), Positives = 172/247 (69%), Gaps = 13/247 (5%)

Query: 52  RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM 111
           R+RVE L+ +Q E DELEAKF EE   LE KY KLYQP+Y KR EI+NG  E        
Sbjct: 1   RQRVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTE----- 55

Query: 112 DQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLE 170
              E++  EEKG+P FWLTA+KN+ +LSE ITERDE ALK+L DI+   ++DPK GFKL 
Sbjct: 56  --VEEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLI 113

Query: 171 FYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKK-PKKGSKN 229
           F+F PNPYF N VLTKTYH+ DE +P   K+ GT IEW  GK LT K +KKK   K +  
Sbjct: 114 FHFAPNPYFTNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQ 173

Query: 230 AKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAV 289
            + ITKT   ESFFNFF+PP+VP+DD+D DE+    L+ ++E DY+IG  I+D +IP A+
Sbjct: 174 TRTITKTVPAESFFNFFSPPKVPDDDDDDDEE----LEEELELDYEIGEIIKDDLIPRAL 229

Query: 290 SWFTGEA 296
            ++TGEA
Sbjct: 230 DYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2 Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) Back     alignment and domain information
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2 Back     alignment and domain information
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 100.0
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 100.0
PF00956244 NAP: Nucleosome assembly protein (NAP); InterPro: 100.0
PTZ00008185 (NAP-S) nucleosome assembly protein-S; Provisional 100.0
KOG1508260 consensus DNA replication factor/protein phosphata 99.94
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 97.82
PF10446 458 DUF2457: Protein of unknown function (DUF2457); In 95.66
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 95.4
PF06524314 NOA36: NOA36 protein; InterPro: IPR010531 This fam 93.51
PF1162949 Mst1_SARAH: C terminal SARAH domain of Mst1; Inter 93.36
PF04931 784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 93.03
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 91.55
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 90.11
KOG1189960 consensus Global transcriptional regulator, cell d 86.25
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.84
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 82.8
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-89  Score=663.29  Aligned_cols=295  Identities=55%  Similarity=0.902  Sum_probs=263.3

Q ss_pred             CCCCCCCCchhhhhHh------------------hC------cccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHH
Q 017717            1 MSADKDNFNVTDLRAS------------------LD------EGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVE   56 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~------------------~~------~~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~   56 (367)
                      |||.+++++|+++.++                  +.      ...+|.++++++.|+++|+++.+++|++||++||+||.
T Consensus         1 msn~k~s~~~sd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~   80 (358)
T KOG1507|consen    1 MSNDKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVL   80 (358)
T ss_pred             CCCccccccccccCCCCCCCcccccccccccccccccccccccccChhhhcccchhhhcccCCCchhhhhcCHHHHHHHH
Confidence            8999999999988765                  22      12356699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCcccccchhh------------hhhhhhccCC
Q 017717           57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGV  124 (367)
Q Consensus        57 aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~------------~~~~~~~kgI  124 (367)
                      |||+||.++..|+++|+++++.||+||+++|+|||+||++||+|.++|+.+++++...            ......+|||
T Consensus        81 aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGI  160 (358)
T KOG1507|consen   81 ALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGI  160 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCC
Confidence            9999999999999999999999999999999999999999999999999877654211            1123467999


Q ss_pred             CcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCccCceEEEEEEec---CCCCc----
Q 017717          125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP----  196 (367)
Q Consensus       125 P~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~-~gF~L~F~F~~NpYF~N~vLtK~y~~~---~~~~p----  196 (367)
                      |+||||||+|+++|++||+++|++||+||+||++.+.+++ +||+|+|||+|||||+|+||||||+|+   +..+|    
T Consensus       161 P~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~  240 (358)
T KOG1507|consen  161 PDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFD  240 (358)
T ss_pred             chHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccC
Confidence            9999999999999999999999999999999999999877 699999999999999999999999998   55556    


Q ss_pred             --ceecceeeeeeecCCCCCchhhhhcCCC-CCCCCCCccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhcc
Q 017717          197 --ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQD  273 (367)
Q Consensus       197 --~~~~~~gt~I~Wk~GknlT~k~~kKk~k-kg~k~~r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D  273 (367)
                        .+.+|+||.|+|++|||||+++++|||| |+++++|+|+++++++||||||+||.+| +.++.|++..   +++|+.|
T Consensus       241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~D  316 (358)
T KOG1507|consen  241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELD  316 (358)
T ss_pred             CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhh
Confidence              6889999999999999999998888764 7788999999999999999999999999 3333343322   7899999


Q ss_pred             ccchhhhhhhcccchhhhhccccccc
Q 017717          274 YDIGSTIRDKIIPHAVSWFTGEAIQE  299 (367)
Q Consensus       274 ~eig~~I~d~IiP~AV~yftGea~~~  299 (367)
                      |+||++||++|||+||.||||+|++.
T Consensus       317 yeIG~~lr~~IIPrAV~~fTGea~e~  342 (358)
T KOG1507|consen  317 YEIGETLRDKIIPRAVLWFTGEALED  342 (358)
T ss_pred             HHHHHHHHhhhhhheeeeeccccccc
Confidence            99999999999999999999999544

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus Back     alignment and domain information
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair] Back     alignment and domain information
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues Back     alignment and domain information
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
2ayu_A417 The Structure Of Nucleosome Assembly Protein Sugges 9e-33
2z2r_A292 Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng 3e-32
3hfd_A276 Nucleosome Assembly Protein 1 From Plasmodium Knowl 5e-32
3fs3_A359 Crystal Structure Of Malaria Parasite Nucleosome As 3e-31
3gyv_A249 Crystal Structure Of Nucleosome Assembly Protein Fr 2e-30
2e50_A225 Crystal Structure Of SetTAF-1betaINHAT Length = 225 2e-18
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 31/299 (10%)
Query: 25  LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84
           L+  ++++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ 
Sbjct: 66  LLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFL 125
Query: 85  KLYQPMYTKRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE------KGV 124
           + Y+P++ +R  I++G  +  P ++A  Q              EE+KA  +      KG+
Sbjct: 126 QKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 185
Query: 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP--NPYFKN 181
           P FWLTA++N  ++ + IT+RD   L++L+DI   +  D   GFKL F FD   NP+F N
Sbjct: 186 PSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTN 245
Query: 182 SVLTKTYHMIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXXXXXXPITK 235
            +L KTY    E     + I + A G EI W                          I K
Sbjct: 246 DILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 305
Query: 236 TEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTG 294
               ESFFNFF+PP++               +  +  DY IG  ++DK+IP AV WFTG
Sbjct: 306 ITPIESFFNFFDPPKIQNEDQDEELEEDLEERLAL--DYSIGEQLKDKLIPRAVDWFTG 362
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292 Back     alignment and structure
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276 Back     alignment and structure
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359 Back     alignment and structure
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249 Back     alignment and structure
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 9e-73
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 5e-59
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 3e-58
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 4e-48
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 1e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure
 Score =  231 bits (589), Expect = 9e-73
 Identities = 119/395 (30%), Positives = 205/395 (51%), Gaps = 49/395 (12%)

Query: 1   MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLRE 60
             A + +  +  +        +  L+  ++++L +L GQ S  +  L   V++++  L+ 
Sbjct: 42  AQAQEQDDKIGTINEEDILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKT 101

Query: 61  IQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEV----------- 109
           +QSE  E+E +F  E   LE K+ + Y+P++ +R  I++G  +  P ++           
Sbjct: 102 LQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLN 161

Query: 110 ---------AMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFR 160
                       Q + +  + KG+P FWLTA++N  ++ + IT+RD   L++L+DI    
Sbjct: 162 ETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEY 221

Query: 161 IDDPK-GFKLEFYFD--PNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYPGKC 213
           + D + GFKL F FD   NP+F N +L KTY    E     + I + A G EI W     
Sbjct: 222 LTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAH 281

Query: 214 LT--QKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQME 271
                  ++K+  K +K  + I K    ESFFNFF+PP++  +D+D + +  E+L+ ++ 
Sbjct: 282 NVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELE--EDLEERLA 339

Query: 272 QDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDD 331
            DY IG  ++DK+IP AV WFTG A++ E  E +++ D+D+ +E++DD G +D+D +  +
Sbjct: 340 LDYSIGEQLKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399

Query: 332 EEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQ 366
           E+D                    A + E+ PECKQ
Sbjct: 400 EQD------------------DFAGRPEQAPECKQ 416
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 100.0
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 100.0
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 100.0
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 100.0
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 100.0
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 97.77
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 95.12
2jo8_A51 Serine/threonine-protein kinase 4; C-terminal doma 92.42
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 92.16
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 87.57
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
Probab=100.00  E-value=1.8e-88  Score=681.28  Aligned_cols=281  Identities=37%  Similarity=0.673  Sum_probs=236.8

Q ss_pred             ccchhHHHHHHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q 017717           20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN   99 (367)
Q Consensus        20 ~~~~~~~~~l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~   99 (367)
                      .+||+|+++||+||++|+|++++||++||+.|++||.+|++||.++.+|+++|++++++||+||+++|+|||++|++||+
T Consensus        61 ~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~  140 (417)
T 2ayu_A           61 ANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIIS  140 (417)
T ss_dssp             ---------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccccchhh--------------------hhhhhhccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEE
Q 017717          100 GVVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWF  159 (367)
Q Consensus       100 G~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~  159 (367)
                      |.++|+.+|+.+...                    ......++|||+||+|||+||+.|+.||+++|++||+||+||+|+
T Consensus       141 G~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve  220 (417)
T 2ayu_A          141 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLE  220 (417)
T ss_dssp             TSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECC
T ss_pred             CCCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEE
Confidence            999999766542210                    111234689999999999999999999999999999999999999


Q ss_pred             EeCC-CCceEEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCC
Q 017717          160 RIDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNA  230 (367)
Q Consensus       160 ~~ed-~~gF~L~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~Wk~-GknlT~k~~kKk~k-kg~k~~  230 (367)
                      ++.+ +.||+|+|||  .+||||+|++|||+|+|...    |.+++.+++||+|+||+ |||||+++++||+| |+++.+
T Consensus       221 ~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~  300 (417)
T 2ayu_A          221 YLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV  300 (417)
T ss_dssp             BCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC--------
T ss_pred             EccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcc
Confidence            9875 6699999999  99999999999999999754    34455689999999999 99999999988866 677889


Q ss_pred             CccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhcccccccccc
Q 017717          231 KPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEI  302 (367)
Q Consensus       231 r~v~k~~~~eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d~~  302 (367)
                      |+|+++++++||||||+|+.+|++++  +++..++++++|+.||+||++|+++|||+||.||||++++.++.
T Consensus       301 R~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e~e  370 (417)
T 2ayu_A          301 RTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFE  370 (417)
T ss_dssp             -CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHHHC
T ss_pred             cccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhcccccccccc
Confidence            99999999999999999999988753  22334568899999999999999999999999999999998653
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 367
d2ayua1301 d.305.1.1 (A:70-370) Nucleosome assembly protein, 9e-84
d2e50a1222 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie 9e-62
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  254 bits (651), Expect = 9e-84
 Identities = 95/301 (31%), Positives = 159/301 (52%), Gaps = 31/301 (10%)

Query: 29  LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 88
           ++++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ + Y+
Sbjct: 1   IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYK 60

Query: 89  PMYTKRYEIVNGVVEGAPNEVA--------------------MDQEEDKATEEKGVPDFW 128
           P++ +R  I++G  +  P ++A                      Q + +  + KG+P FW
Sbjct: 61  PIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFW 120

Query: 129 LTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKG---FKLEFYFDPNPYFKNSVLT 185
           LTA++N  ++ + IT+RD   L++L+DI    + D +        F    NP+F N +L 
Sbjct: 121 LTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILC 180

Query: 186 KTYHMIDE----DEPILEKAIGTEIEWYPGK--CLTQKLLKKKPKKGSKNAKPITKTEEC 239
           KTY    E     + I + A G EI W            ++K+  K +K  + I K    
Sbjct: 181 KTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI 240

Query: 240 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE 299
           ESFFNFF+PP++  +D+  DE+  E+L+ ++  DY IG  ++DK+IP AV WFTG A++ 
Sbjct: 241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEF 298

Query: 300 E 300
           E
Sbjct: 299 E 299
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d2ayua1301 Nucleosome assembly protein, NAP {Baker's yeast (S 100.0
d2e50a1222 Protein SET {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-75  Score=563.84  Aligned_cols=270  Identities=38%  Similarity=0.706  Sum_probs=232.5

Q ss_pred             HHHHhhhhcCCCchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhccccCCccc
Q 017717           29 LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNE  108 (367)
Q Consensus        29 l~~~l~~l~~~~~~~~~~Lp~~v~~rv~aLk~lQ~e~~~le~~f~~E~~~LE~ky~k~~~Ply~kR~eII~G~~e~~~~E  108 (367)
                      ||+||++|+|++++||++||+.||+||.||++||.++.+|+++|++++++||++|+++|+|||++|++||+|.++|+.+|
T Consensus         1 ~~~~l~~l~~~~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE   80 (301)
T d2ayua1           1 IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQ   80 (301)
T ss_dssp             CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH
T ss_pred             CcchhhhhhcCCcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             ccchh--------------------hhhhhhhccCCCcchHHHHhcchhhhcccchhhHHhhccccccEEEEeCCCC-ce
Q 017717          109 VAMDQ--------------------EEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GF  167 (367)
Q Consensus       109 ~~~~~--------------------~~~~~~~~kgIP~FWltal~N~~~l~~~I~e~De~iLk~L~DI~v~~~ed~~-gF  167 (367)
                      +.+..                    .......++|||+||++||+||+.|+.||+++|++||+||+||+|++..++. ||
T Consensus        81 ~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf  160 (301)
T d2ayua1          81 IAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGF  160 (301)
T ss_dssp             HHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEE
T ss_pred             hhcccccccccchhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCc
Confidence            43211                    0122345689999999999999999999999999999999999999887654 99


Q ss_pred             EEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCCchhhhhcCCC-CCCCCCCcccccccc
Q 017717          168 KLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNAKPITKTEEC  239 (367)
Q Consensus       168 ~L~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~Wk~-GknlT~k~~kKk~k-kg~k~~r~v~k~~~~  239 (367)
                      +|+|+|  .|||||+|++|||+|+|...    +.+++.+++||+|+||+ |+|+|+++++||+| |+++.+|++++++++
T Consensus       161 ~l~F~F~f~~N~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~  240 (301)
T d2ayua1         161 KLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI  240 (301)
T ss_dssp             EEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEEC
T ss_pred             eEEEEEecCCCCCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCC
Confidence            999999  68999999999999999754    23446689999999999 68999998877655 667788999999999


Q ss_pred             ccccccccccCCCCCCCCCChhHHHHHHHhhhccccchhhhhhhcccchhhhhcccccccc
Q 017717          240 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  300 (367)
Q Consensus       240 eSFFnFF~~~~~p~~~~d~Ded~~ee~~e~l~~D~eig~~I~d~IiP~AV~yftGea~~~d  300 (367)
                      +||||||+|+.+|....  +++..+++++.|+.||+||..|++.|||+||.||||+|++.+
T Consensus       241 ~SFF~fF~~~~~~~~~~--~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             CCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             CCCCcCCCCCCCCCccc--cchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhhhcc
Confidence            99999999999887554  344556789999999999999999999999999999999875
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure