Citrus Sinensis ID: 017720

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
MAAIISCNFVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMGI
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccEEcccccccccccccHHcccccccccccccccccHHcccccccccc
ccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccEEEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHcccccccEEEEcccEEEEcccccccccccEccccccEEEEEEEEEccccccccccccHHHcccccccccccccHHcHEEEEccccccc
maaiiscnfvtprlptnriqtthykcnnnngrvlsrrllpkccvknhnhnpfqkLKECAISIALAAGLitgvpaiadaninaninmampdvsvlisgppikdpgallryalpidnkavrEVQKPLEDITDSLKIagvkaldpveRNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEdrdrdavapkQKELLNyvggveedmvdgfpyevpeeyqsmpllkgratvdmkvkvkdnpnvdeCVFRIVLdgynapvtagnFVDLVQRhfydgmeiqradgfvvqtgdpegpaegfidpstektrtipleimvegekspfygatLEELGLYkaqtklpfnafgtMAMARDVSMGI
maaiiscnfvtprlptnriqtthykcnnnngrvLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDslkiagvkaldpvernvrqasrtlkqgkslivEGLAESKKEHGMELLQKLEAGMDELQQIVEdrdrdavapkqkellnyvggveedmVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPegpaegfidpstektRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMGI
MAAIISCNFVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVpaiadaninaninmampdVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMGI
***IISCNFVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKAL****************************************************************ELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQT*******************TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMA*********
********FVTPRLPTNRI********************************FQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPV****RQ***TLKQGKSLIV***********MELLQKLEAG***************************************************LKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGD**************KTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV****
MAAIISCNFVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMGI
MAAIISCNFVTPRLPTNRIQTTHYKCNNNN*****RRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAIISCNFVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIALAAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELxxxxxxxxxxxxxxxxxxxxxAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVSMGI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query367 2.2.26 [Sep-21-2011]
Q9SSA5437 Peptidyl-prolyl cis-trans yes no 0.926 0.778 0.732 1e-151
O49939449 Peptidyl-prolyl cis-trans N/A no 0.950 0.777 0.729 1e-140
Q55118379 Putative thylakoid lumen N/A no 0.708 0.686 0.437 5e-59
P82869466 Peptidyl-prolyl cis-trans no no 0.899 0.708 0.266 3e-23
P72704246 Probable peptidyl-prolyl N/A no 0.321 0.479 0.419 8e-16
>sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1 Back     alignment and function desciption
 Score =  536 bits (1380), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/359 (73%), Positives = 301/359 (83%), Gaps = 19/359 (5%)

Query: 11  TPRLPTNRI------QTTHYKCNNNNGRVLSRRLLPKCCVKNHNHNPFQKLKECAISIAL 64
           + R P  RI      +    +C++ N R   +R              F  LKECAIS+AL
Sbjct: 16  SSRFPRRRIGFSCSKKPLEVRCSSGNTRYTKQR------------GAFTSLKECAISLAL 63

Query: 65  AAGLITGVPAIA-DANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQK 123
           + GL+  VP+IA   N +A  N  +PDVSVLISGPPIKDP ALLRYALPIDNKA+REVQK
Sbjct: 64  SVGLMVSVPSIALPPNAHAVANPVIPDVSVLISGPPIKDPEALLRYALPIDNKAIREVQK 123

Query: 124 PLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAG 183
           PLEDITDSLKIAGVKALD VERNVRQASRTL+QGKS+IV G AESKK+HG E+++KLEAG
Sbjct: 124 PLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAG 183

Query: 184 MDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDM 243
           M ++ +IVEDR RDAVAPKQKE+L YVGG+EEDMVDGFPYEVPEEY++MPLLKGRA+VDM
Sbjct: 184 MQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDM 243

Query: 244 KVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEG 303
           KVK+KDNPN+++CVFRIVLDGYNAPVTAGNFVDLV+RHFYDGMEIQR+DGFVVQTGDPEG
Sbjct: 244 KVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEG 303

Query: 304 PAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD 362
           PAEGFIDPSTEKTRT+PLEIMV GEK+PFYG+TLEELGLYKAQ  +PFNAFGTMAMAR+
Sbjct: 304 PAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 362
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|O49939|TLP40_SPIOL Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1 Back     alignment and function description
>sp|Q55118|PPI3_SYNY3 Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0408 PE=3 SV=2 Back     alignment and function description
>sp|P82869|CYP37_ARATH Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3 Back     alignment and function description
>sp|P72704|PPI1_SYNY3 Probable peptidyl-prolyl cis-trans isomerase sll0227 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0227 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
255552604465 peptidyl-prolyl cis-trans isomerase, put 0.964 0.761 0.731 1e-160
225452484448 PREDICTED: peptidyl-prolyl cis-trans iso 0.967 0.792 0.751 1e-157
449446650447 PREDICTED: peptidyl-prolyl cis-trans iso 0.980 0.805 0.764 1e-156
356571435445 PREDICTED: peptidyl-prolyl cis-trans iso 0.967 0.797 0.748 1e-156
356546178 775 PREDICTED: peptidyl-prolyl cis-trans iso 0.967 0.458 0.748 1e-156
224140879400 predicted protein [Populus trichocarpa] 0.858 0.787 0.846 1e-154
15232123437 peptidyl-prolyl cis-trans isomerase CYP3 0.926 0.778 0.732 1e-150
297832792437 hypothetical protein ARALYDRAFT_477375 [ 0.942 0.791 0.742 1e-149
357147646423 PREDICTED: peptidyl-prolyl cis-trans iso 0.888 0.770 0.758 1e-144
449489560350 PREDICTED: peptidyl-prolyl cis-trans iso 0.749 0.785 0.898 1e-144
>gi|255552604|ref|XP_002517345.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223543356|gb|EEF44887.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/395 (73%), Positives = 321/395 (81%), Gaps = 41/395 (10%)

Query: 2   AAIISCN-----------FVTPRLPTNRIQTTHYKCNNNNGRVLSRRLLPKCCVKNHNHN 50
           AAII C             + PR       T H     NN  +L RR++P+C +KN +  
Sbjct: 3   AAIIQCQNCSCVASNSKFLIKPRNEFGFANTFH-----NNAALLGRRMIPRCSIKNSHQ- 56

Query: 51  PFQKL----------------------KECAISIALAAGLITGVPAIA-DANINANINMA 87
            FQ+L                      KECAIS+ALA GLITGVP++   +NI   ++ A
Sbjct: 57  -FQQLSRINCEQFLLAIVEQKGKSFSIKECAISLALAVGLITGVPSLYLSSNIAYAVSPA 115

Query: 88  MPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNV 147
           +P++SVLISGPPIKDPGALLRYALPIDNKA+REVQKPLEDIT+SLK+AGVKALD VERNV
Sbjct: 116 LPNLSVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITESLKVAGVKALDSVERNV 175

Query: 148 RQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELL 207
           RQASR+LKQGK+LI+ GLAESKK+HG+ELL KLEAGMDELQQIVEDR+RDAVA KQKELL
Sbjct: 176 RQASRSLKQGKTLIISGLAESKKDHGVELLDKLEAGMDELQQIVEDRNRDAVASKQKELL 235

Query: 208 NYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNA 267
           NYVGGVEEDMVDGFPYEVPEEYQ+MPLLKGRA VDMKVKVKDNPN++ECVF IVLDGYNA
Sbjct: 236 NYVGGVEEDMVDGFPYEVPEEYQNMPLLKGRAAVDMKVKVKDNPNMEECVFHIVLDGYNA 295

Query: 268 PVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEG 327
           PVTAGNFVDLV+RHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMV G
Sbjct: 296 PVTAGNFVDLVERHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVNG 355

Query: 328 EKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD 362
           EK+PFYG TLEELGLYKAQT+LPFNAFGTMAMARD
Sbjct: 356 EKAPFYGETLEELGLYKAQTRLPFNAFGTMAMARD 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452484|ref|XP_002278807.1| PREDICTED: peptidyl-prolyl cis-trans isomerase, chloroplastic [Vitis vinifera] gi|296087681|emb|CBI34937.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449446650|ref|XP_004141084.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571435|ref|XP_003553882.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356546178|ref|XP_003541508.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224140879|ref|XP_002323806.1| predicted protein [Populus trichocarpa] gi|222866808|gb|EEF03939.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15232123|ref|NP_186797.1| peptidyl-prolyl cis-trans isomerase CYP38 [Arabidopsis thaliana] gi|75266250|sp|Q9SSA5.1|CYP38_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; Short=PPIase CYP38; AltName: Full=Rotamase CYP38; AltName: Full=Thylakoid lumen PPIase; Flags: Precursor gi|6016707|gb|AAF01533.1|AC009325_3 putative thylakoid lumen rotamase [Arabidopsis thaliana] gi|14532438|gb|AAK63947.1| AT3g01480/F4P13_3 [Arabidopsis thaliana] gi|21360549|gb|AAM47471.1| AT3g01480/F4P13_3 [Arabidopsis thaliana] gi|21593368|gb|AAM65317.1| putative thylakoid lumen rotamase [Arabidopsis thaliana] gi|45680876|gb|AAS75307.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|332640151|gb|AEE73672.1| peptidyl-prolyl cis-trans isomerase CYP38 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832792|ref|XP_002884278.1| hypothetical protein ARALYDRAFT_477375 [Arabidopsis lyrata subsp. lyrata] gi|297330118|gb|EFH60537.1| hypothetical protein ARALYDRAFT_477375 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357147646|ref|XP_003574425.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|449489560|ref|XP_004158348.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query367
TAIR|locus:2084138437 CYP38 "cyclophilin 38" [Arabid 0.847 0.711 0.791 5e-131
TAIR|locus:2090101466 AT3G15520 [Arabidopsis thalian 0.915 0.721 0.266 3.2e-23
UNIPROTKB|P72704246 sll0227 "Probable peptidyl-pro 0.337 0.504 0.408 3.2e-18
TAIR|locus:2084138 CYP38 "cyclophilin 38" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 247/312 (79%), Positives = 276/312 (88%)

Query:    52 FQKLKECAISIALAAGLITGVXXXXXXXXXXXXXXXXX-XVSVLISGPPIKDPGALLRYA 110
             F  LKECAIS+AL+ GL+  V                   VSVLISGPPIKDP ALLRYA
Sbjct:    51 FTSLKECAISLALSVGLMVSVPSIALPPNAHAVANPVIPDVSVLISGPPIKDPEALLRYA 110

Query:   111 LPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKK 170
             LPIDNKA+REVQKPLEDITDSLKIAGVKALD VERNVRQASRTL+QGKS+IV G AESKK
Sbjct:   111 LPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKK 170

Query:   171 EHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQ 230
             +HG E+++KLEAGM ++ +IVEDR RDAVAPKQKE+L YVGG+EEDMVDGFPYEVPEEY+
Sbjct:   171 DHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYR 230

Query:   231 SMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQR 290
             +MPLLKGRA+VDMKVK+KDNPN+++CVFRIVLDGYNAPVTAGNFVDLV+RHFYDGMEIQR
Sbjct:   231 NMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR 290

Query:   291 ADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLP 350
             +DGFVVQTGDPEGPAEGFIDPSTEKTRT+PLEIMV GEK+PFYG+TLEELGLYKAQ  +P
Sbjct:   291 SDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIP 350

Query:   351 FNAFGTMAMARD 362
             FNAFGTMAMAR+
Sbjct:   351 FNAFGTMAMARE 362
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2090101 AT3G15520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P72704 sll0227 "Probable peptidyl-prolyl cis-trans isomerase sll0227" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SSA5CYP38_ARATH5, ., 2, ., 1, ., 80.73250.92640.7780yesno
O49939TLP40_SPIOL5, ., 2, ., 1, ., 80.72950.95090.7772N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.963
4th Layer5.2.1.80.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020753001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)
(Vitis vinifera)
Predicted Functional Partners:
PsbP2
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)
  ••  • 0.605
GSVIVG00018549001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)
  ••  • 0.601
GSVIVG00028499001
RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)
  ••    0.594
GSVIVG00037495001
SubName- Full=Chromosome chr8 scaffold_88, whole genome shotgun sequence; (193 aa)
•  •    0.590
GSVIVG00001938001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (229 aa)
  ••    0.564
GSVIVG00025097001
SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)
  ••    0.559
GSVIVG00028771001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)
  ••    0.552
GSVIVG00025996001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (209 aa)
  ••  • 0.546
GSVIVG00036647001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (148 aa)
   •  • 0.526
GSVIVG00037015001
SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (198 aa)
  ••    0.519

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
cd01924176 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 2e-59
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 3e-15
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 3e-15
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 2e-12
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 2e-04
cd01923159 cd01923, cyclophilin_RING, cyclophilin_RING: cyclo 2e-04
cd01922146 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY 5e-04
cd01928153 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 0.002
cd01925171 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC 0.004
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information 
 Score =  189 bits (481), Expect = 2e-59
 Identities = 75/114 (65%), Positives = 81/114 (71%), Gaps = 1/114 (0%)

Query: 250 NPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADG-FVVQTGDPEGPAEGF 308
               D     IVLDGYNAPVTAGNFVDLV+R FYDGME  R +G FVVQTGDP+G   GF
Sbjct: 1   GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60

Query: 309 IDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD 362
            DP T K+RTIPLEI  EG+K P YG TLEE G Y  Q  LPFNAFG +AMAR 
Sbjct: 61  PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMART 114

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like Back     alignment and domain information
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 367
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 99.93
KOG0883 518 consensus Cyclophilin type, U box-containing pepti 99.92
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 99.9
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 99.86
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 99.85
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 99.85
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 99.85
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 99.85
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 99.85
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.83
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 99.83
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 99.82
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 99.82
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 99.81
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 99.8
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.8
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 99.78
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 99.76
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 99.75
PTZ00060183 cyclophilin; Provisional 99.75
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 99.73
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 99.72
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 99.72
PTZ00221249 cyclophilin; Provisional 99.69
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 99.65
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 99.64
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 99.62
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 99.2
PF05757202 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I 96.76
PLN02729220 PSII-Q subunit 95.97
TIGR03042142 PS_II_psbQ_bact photosystem II protein PsbQ. This 95.92
PLN02956185 PSII-Q subunit 95.53
PLN02999190 photosystem II oxygen-evolving enhancer 3 protein 95.43
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information 
Probab=99.93  E-value=2.1e-26  Score=209.08  Aligned_cols=112  Identities=67%  Similarity=1.057  Sum_probs=103.0

Q ss_pred             cceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccccccccccccCCCCCC
Q 017720          254 DECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKSPF  332 (367)
Q Consensus       254 ~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi~~~G~~~pi  332 (367)
                      +.|+|+|+||++.||+||+||++||+.|||||+.|||| ++||||||||.+++.|+.|+.++..+.+|+|++..+.+.|+
T Consensus         5 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~   84 (176)
T cd01924           5 DNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPV   84 (176)
T ss_pred             ccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCc
Confidence            38999999999999999999999999999999999999 99999999999888888899998889999999998889999


Q ss_pred             CCcchhhhhcccccCCCCCCCCeEEEeecCCCC
Q 017720          333 YGATLEELGLYKAQTKLPFNAFGTMAMARDVSM  365 (367)
Q Consensus       333 yg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~~P  365 (367)
                      |+.++++.+...+.+.|+||++|+|||||++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~  117 (176)
T cd01924          85 YGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFD  117 (176)
T ss_pred             cCcccccccccccccccccCCCCeEEEccCCCC
Confidence            998876555556788999999999999998863

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae Back     alignment and domain information
>PLN02729 PSII-Q subunit Back     alignment and domain information
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ Back     alignment and domain information
>PLN02956 PSII-Q subunit Back     alignment and domain information
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
3rfy_A369 Crystal Structure Of Arabidopsis Thaliana Cyclophil 1e-140
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38 (Atcyp38) Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/272 (86%), Positives = 260/272 (95%)
Query: 91  VSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQA 150
           VSVLISGPPIKDP ALLRYALPIDNKA+REVQKPLEDITDSLKIAGVKALD VERNVRQA
Sbjct: 23  VSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQA 82
Query: 151 SRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYV 210
           SRTL+QGKS+IV G AESKK+HG E+++KLEAGM ++ +IVEDR RDAVAPKQKE+L YV
Sbjct: 83  SRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYV 142
Query: 211 GGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMKVKVKDNPNVDECVFRIVLDGYNAPVT 270
           GG+EEDMVDGFPYEVPEEY++MPLLKGRA+VDMKVK+KDNPN+++CVFRIVLDGYNAPVT
Sbjct: 143 GGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVT 202
Query: 271 AGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVEGEKS 330
           AGNFVDLV+RHFYDGMEIQR+DGFVVQTGDPEGPAEGFIDPSTEKTRT+PLEIMV GEK+
Sbjct: 203 AGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKT 262
Query: 331 PFYGATLEELGLYKAQTKLPFNAFGTMAMARD 362
           PFYG+TLEELGLYKAQ  +PFNAFGTMAMAR+
Sbjct: 263 PFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query367
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 1e-109
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 2e-08
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 2e-08
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 4e-08
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 5e-07
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 8e-07
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 1e-06
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 1e-06
2hq6_A185 Serologically defined colon cancer antigen 10; pro 2e-06
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 2e-06
2b71_A196 Cyclophilin-like protein; structural genomics, str 2e-06
3bkp_A 232 Cyclophilin; malaria, isomerase, structural GENO s 4e-06
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 5e-06
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 7e-06
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 1e-04
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 3e-04
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure
 Score =  323 bits (828), Expect = e-109
 Identities = 240/297 (80%), Positives = 268/297 (90%), Gaps = 5/297 (1%)

Query: 65  AAGLITGVPAIADANINANINMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKP 124
           + G+  G   I         N  +PDVSVLISGPPIKDP ALLRYALPIDNKA+REVQKP
Sbjct: 2   SPGISGGGGGIL-----LVANPVIPDVSVLISGPPIKDPEALLRYALPIDNKAIREVQKP 56

Query: 125 LEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVEGLAESKKEHGMELLQKLEAGM 184
           LEDITDSLKIAGVKALD VERNVRQASRTL+QGKS+IV G AESKK+HG E+++KLEAGM
Sbjct: 57  LEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGM 116

Query: 185 DELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDMK 244
            ++ +IVEDR RDAVAPKQKE+L YVGG+EEDMVDGFPYEVPEEY++MPLLKGRA+VDMK
Sbjct: 117 QDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMK 176

Query: 245 VKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGP 304
           VK+KDNPN+++CVFRIVLDGYNAPVTAGNFVDLV+RHFYDGMEIQR+DGFVVQTGDPEGP
Sbjct: 177 VKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGP 236

Query: 305 AEGFIDPSTEKTRTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMAR 361
           AEGFIDPSTEKTRT+PLEIMV GEK+PFYG+TLEELGLYKAQ  +PFNAFGTMAMAR
Sbjct: 237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAR 293
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 100.0
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 99.9
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 99.9
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 99.9
2b71_A196 Cyclophilin-like protein; structural genomics, str 99.9
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 99.89
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 99.89
2hq6_A185 Serologically defined colon cancer antigen 10; pro 99.89
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 99.89
3bkp_A 232 Cyclophilin; malaria, isomerase, structural GENO s 99.89
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 99.89
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 99.88
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 99.88
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 99.87
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 99.87
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 99.86
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 99.86
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 99.86
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 99.86
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 99.86
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 99.86
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 99.86
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 99.86
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 99.86
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 99.86
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 99.85
1z81_A229 Cyclophilin; structural genomics, structural genom 99.85
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 99.85
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 99.85
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 99.85
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 99.85
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.85
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 99.85
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 99.84
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 99.83
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 99.82
1vyk_A149 Oxygen-evolving enhancer protein 3; photosystem II 95.24
3zsu_A130 TLL2057 protein, cyanoq; photosystem II assembly, 93.98
3ls0_A133 SLL1638 protein, PSBQ; photosynthesis, four helix 92.12
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=7.1e-81  Score=618.61  Aligned_cols=283  Identities=84%  Similarity=1.311  Sum_probs=274.5

Q ss_pred             hcCCCCCcccccCCCCCCCHHHHhhhcCCCCCHhHHHHhhhHhhhhhhhhccccccChhhhhhHHHHHHHHhcccchhhc
Q 017720           84 INMAMPDVSVLISGPPIKDPGALLRYALPIDNKAVREVQKPLEDITDSLKIAGVKALDPVERNVRQASRTLKQGKSLIVE  163 (367)
Q Consensus        84 ~~~~~~~~a~l~~g~~i~d~~a~LR~alP~~n~~ir~iQ~~LE~i~~~Lr~~~~k~w~~~~~~v~~a~~~l~~~~~~il~  163 (367)
                      .+++.|..|+||+|||||||+|||||||||+|++||+||++||+|+++||+||||||++|++||++|+++|++++++||+
T Consensus        16 ~~~~~~~~~~l~~g~~~~~~~a~lr~alp~~~~~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~   95 (369)
T 3rfy_A           16 ANPVIPDVSVLISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVA   95 (369)
T ss_dssp             ECTTSCSCCEEEESTTSCCHHHHHHHHSCCCCHHHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred             ecccCchhhccCCCCCCCCHHHHHhhhcCCCChhHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHh
Confidence            46888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHhHHHHHHHHhhcCccchhHHHHHHHHHhhchhhhcccCCCCCCCcccccCCCCCCceEEEE
Q 017720          164 GLAESKKEHGMELLQKLEAGMDELQQIVEDRDRDAVAPKQKELLNYVGGVEEDMVDGFPYEVPEEYQSMPLLKGRATVDM  243 (367)
Q Consensus       164 ~vp~~~~~~~~~l~~~l~~~l~~l~~~~~~kd~~~~~~~~~~~L~~v~~lE~~~v~~~p~~vP~~y~~~P~l~GratV~~  243 (367)
                      +||+++|++|+++|++|+++|++|++++++||+++|...|+++|+.|++||++|+++|||+||++|..+|+++|+++|+|
T Consensus        96 ~v~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~~~~~~fp~~vP~~y~~~P~l~gra~V~m  175 (369)
T 3rfy_A           96 GFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDM  175 (369)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHHHSSCSSCSSCCSSCTTSCEECSEEEEEE
T ss_pred             hcChhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhccCCCccCchhcccCccCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeeeCCceEecCCCCCCCCCccCCCCCccccccccc
Q 017720          244 KVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEI  323 (367)
Q Consensus       244 ~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV~gFViQgGDp~g~g~G~~dp~tg~~~~iPlEi  323 (367)
                      +|+.+++++.+.|+|+|+||++.||+||+||++||++|||||+.||||+|||||||||.++|.||.+|.++..+.+|+|+
T Consensus       176 ~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV~gFmIQgGDp~g~G~G~~~~~~g~~~~iP~E~  255 (369)
T 3rfy_A          176 KVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEI  255 (369)
T ss_dssp             EEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEEEEEEECCCCCCCCCSCCCSCCCCCCCSSSSSS
T ss_pred             EEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeeeCCeeEecCCCCCCCCCccCcccCcCcccCccc
Confidence            99988877788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecC-CCCC
Q 017720          324 MVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARD-VSMG  366 (367)
Q Consensus       324 ~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs-~~Pg  366 (367)
                      ...|.+.|+|+.+|+++||+...+.|+||++|+|||||+ ..||
T Consensus       256 ~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPn  299 (369)
T 3rfy_A          256 MVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFEND  299 (369)
T ss_dssp             CSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCC
T ss_pred             cccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCC
Confidence            999999999999999999887788999999999999998 3454
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Back     alignment and structure
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Back     alignment and structure
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 367
d1xwna1166 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome 1e-06
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 4e-05
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 1e-04
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 26/105 (24%)

Query: 258 FRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKT 316
             + L   +AP T  NF +L +R +Y+G +  R    F++Q GDP G   G         
Sbjct: 23  IVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG--------- 73

Query: 317 RTIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMAR 361
                        +  YG   E     +    L F   G +AMA 
Sbjct: 74  ------------GASIYGKQFE----DELHPDLKFTGAGILAMAN 102
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query367
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 99.82
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 99.8
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.8
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 99.79
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 99.79
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 99.78
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.77
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.74
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 99.7
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 99.7
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.7
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 99.7
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 99.7
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 99.69
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.69
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.67
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 99.66
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 99.66
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 99.65
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 99.65
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 99.64
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 99.6
d1nzea_112 Oxygen-evolving enhancer protein 3, {Spinach (Spin 96.15
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=164.19  Aligned_cols=92  Identities=30%  Similarity=0.544  Sum_probs=76.3

Q ss_pred             eEEEEEeccCCCCCccceeEEEEEcCCCCchhHHHHHHhhhccCCCCceeeee-CCceEecCCCCCCCCCccCCCCCccc
Q 017720          239 ATVDMKVKVKDNPNVDECVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMEIQRA-DGFVVQTGDPEGPAEGFIDPSTEKTR  317 (367)
Q Consensus       239 atV~~~t~~~d~~~~~~G~I~IeLdg~~AP~Ta~NFv~Lv~~GfYDG~~FhRV-~gFViQgGDp~g~g~G~~dp~tg~~~  317 (367)
                      .+|.|+|+        .|+|+|+||.+.||+||+||+.||+.|||||+.|||+ ++|++|+||+.+.+.|.         
T Consensus        12 p~v~~~T~--------~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~---------   74 (166)
T d1xwna1          12 PNVYLETS--------MGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGG---------   74 (166)
T ss_dssp             CEEEEEES--------SCEEEEEECTTTCHHHHHHHHHHHHHTSSTTCCEEEEETTTEEEECCSTTTTSSC---------
T ss_pred             CEEEEEEC--------ceeEEEEEcCCCChHHHHHHHHHHhcCCcCceeeeEEcccEEEEeCCCCCCCCCC---------
Confidence            37889998        7999999999999999999999999999999999999 99999999998765441         


Q ss_pred             cccccccccCCCCCCCCcchhhhhcccccCCCCCCCCeEEEeecCC
Q 017720          318 TIPLEIMVEGEKSPFYGATLEELGLYKAQTKLPFNAFGTMAMARDV  363 (367)
Q Consensus       318 ~iPlEi~~~G~~~piyg~~~ed~G~~~~~p~Lp~~~~GtLAMArs~  363 (367)
                                  ...++..++++    .++.+.|+.+|+|+|++++
T Consensus        75 ------------~~~~~~~~~~e----~~~~~~~~~~G~lsm~~~~  104 (166)
T d1xwna1          75 ------------ASIYGKQFEDE----LHPDLKFTGAGILAMANAG  104 (166)
T ss_dssp             ------------CCSSCSCCCCC----CCTTCCSCSSSEEEEEEEE
T ss_pred             ------------ccCCCCccccc----cCCCCCCCCCeEEEecccC
Confidence                        22333334332    3567889999999999864
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure