Citrus Sinensis ID: 017727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDSTPAIHQSEGMFQDYELGYNI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccHHHHHHHHHHHHHccccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHcccccccccccccccccEEccccccccEcccccc
Coil and Loop (DISEMBL)
mgrapccdkanvkkgpwspeedaKLKDYIEkygtggnwialpqkiglkrcgksCRLRWLNylrpnikhggfseeeDNIICSLYISIGSRWSIIAaqlpgrtdndiknYWNTRLKKKLLgrrkqsnninglistsgqdvngvnnggdennnsqysqSLSNSAIERLQLHMQLQSlqnplsfynnpsfwpklhPVQEKMIQNLQSLNqscqnpnlqnvlpssqlglheqnvgnffeqsnsppsapqdfpqstcpvpvsstdnnvmnsNAMLkangfepynaanqEVSTFQAEIENFLNnnkavgftaqeenQIAQFDcfnalngsnkeSLIWWANefdsksassnswdstpaihqsegmfqdyelgyni
Flexible Loop (DISEMBL)
mgrapccdkanvkkgpwspeedAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPnikhggfseeEDNIICSLYISIGSRWSIIAAQlpgrtdndiknYWNTRLKkkllgrrkqsnninglistsgqdvngVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDSTPaihqsegmfqdyelgyni
Low Complexity Region (SEG)
MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTrlkkkllgrrkQSNNINGLISTsgqdvngvnnggdennnsqysqslsnsAIERLQLHMQLQSLQNPLSFYNNPSFWPKLHPVQEKMIqnlqslnqscqnpnlqnVLPSSQLGLHEQNVGNFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDsksassnswdsTPAIHQSEGMFQDYELGYNI
Disordered region (IsUnstruct)
************************LKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL*******************************************************LQNPLSFYNNPSFWPKLHPV********************************************************************************************TFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWAN**********************************
Disordered Region (DISOPRED)
*GRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK***********************************************************************************************************************************************************************************L***************IAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDSTPAIHQSEGMFQDYELGYNI
Disordered Region (DISEMBL)
MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQ**************TCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFD***********TPAIHQSEGMFQDYELGYNI
Disordered Region (DISPRO)
***APCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNINGLI***************ENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSFYNNPSFWPKL***QEKMIQNL*************************************************************************EP*****QEVSTFQ*EIENFLNNNKAVGFT****N***QFDC********KESLIWWANEFDSKSASSNSWDSTPAIHQSEGMFQDYELGYNI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPxxxxxxxxxxxxxxxxxxxxxNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDSTPAIHQSEGMFQDYELGYNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9M2Y9	310	Transcription factor RAX3	no	no	0.335	0.396	0.902	1e-65
Q9SJL7	298	Transcription factor RAX2	no	no	0.324	0.399	0.857	2e-59
Q9FG68	329	Transcription factor RAX1	no	no	0.321	0.358	0.830	1e-57
Q8GWP0	360	Transcription factor MYB3	no	no	0.615	0.627	0.391	9e-42
P81392	316	Myb-related protein 306 O	N/A	no	0.752	0.873	0.376	1e-41
Q7XBH4	257	Myb-related protein Myb4	no	no	0.316	0.451	0.641	1e-41
Q9S9K9	257	Transcription factor MYB3	no	no	0.324	0.463	0.616	2e-41
Q9SPG2	366	Transcription factor MYB2	no	no	0.444	0.445	0.509	2e-40
Q38851	236	Transcription repressor M	no	no	0.318	0.495	0.601	5e-40
P81393	232	Myb-related protein 308 O	N/A	no	0.324	0.512	0.591	8e-40

>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 119/123 (96%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEE+NIICSLY++IGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL+ +
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120

Query: 121 RKQ 123
           +++
Sbjct: 121 QRK 123

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1

 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 102/119 (85%), Positives = 110/119 (92%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVK+GPWSPEEDAKLKDYIEK GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119
           YLRPNI+HG F+EEEDNII SL+ SIGSRWS+IAA L GRTDNDIKNYWNT+LKKKL+ 
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIA 119

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 98/118 (83%), Positives = 107/118 (90%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK  VK+GPWSPEED+KL+DYIEKYG GGNWI+ P K GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118
           YLRPNIKHG FSEEED II SL+ +IGSRWSIIAA LPGRTDNDIKNYWNT+L+KKLL
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLL 118

Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  171 bits (433), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 140/258 (54%), Gaps = 32/258 (12%)

Query: 1   MGRAPCCDK-ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWL 59
           MGR+PCCD+   VKKGPW PEED KL  YI + G G NW +LP+  GL RCGKSCRLRW+
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYG-NWRSLPKLAGLNRCGKSCRLRWM 59

Query: 60  NYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL- 118
           NYLRP+I+ G FS+ E++ I  L+  +G++WS IA  LPGRTDN+IKNYWNT ++KKLL 
Sbjct: 60  NYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQ 119

Query: 119 ------GRRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQ 172
                     ++N+++ ++  S      +NNG       Q+  +   +    L+  ++LQ
Sbjct: 120 MGIDPVTHEPRTNDLSPILDVSQMLAAAINNG-------QFGNNNLLNNNTALEDILKLQ 172

Query: 173 SLQNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPS----SQLGLHEQN 228
            +   L              +  K I N+ S   +  NP  + V+ S    S     +  
Sbjct: 173 LIHKMLQI------------ITPKAIPNISSFKTNLLNPKPEPVVNSFNTNSVNPKPDPP 220

Query: 229 VGNFFEQSNSPPSAPQDF 246
            G F  QS   P A  DF
Sbjct: 221 AGLFINQSGITPEAASDF 238

Arabidopsis thaliana (taxid: 3702)

>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 162/311 (52%), Gaps = 35/311 (11%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR PCCDK  VKKGPW+PEED  L  YI+++G G NW A+P   GL RC KSCRLRW N
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPG-NWRAIPSNTGLLRCSKSCRLRWTN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRP IK G F+E E+ +I  L   +G+RW+ IA+ LP RTDNDIKNYWNT LKKKL   
Sbjct: 60  YLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKL--- 116

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
            K  +  NG      QD N   +     +  Q+ + L      +  +HM  Q+L + LS 
Sbjct: 117 EKLQSPENG----KCQDGNSSVDSDKSVSKGQWERRL------QTDIHMAKQALCDALSL 166

Query: 181 YNNPSFW--PKLHPVQEKM-----------IQNLQSLNQSCQNPNLQNVLPSSQLGLHEQ 227
               S    PKL  VQ               +N+  L ++ +  +  N   +SQ G  E 
Sbjct: 167 DKTSSSTDDPKLSTVQTTQPRPFQASTYSSAENIARLLENWKKKSPVNASSTSQAGSSES 226

Query: 228 NVGNF-FEQSNSPPSAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVST 286
              +F +       S+P +   ST  +  +S++++++  +   K      + AA   V+ 
Sbjct: 227 TTTSFNYPSVCLSTSSPSEGAISTNFISFNSSNSDILEDHDQAK------FEAATNGVN- 279

Query: 287 FQAEIENFLNN 297
           FQ E +  L+N
Sbjct: 280 FQDESKPILDN 290

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 96/117 (82%), Gaps = 1/117 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCC+K  +KKGPW+PEED  L  +I+++G G NW ALP++ GL RCGKSCRLRW+N
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHG-NWRALPKQAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
           YLRP+IK G FS+EE++ I  L+  +G+RWS IAA+LPGRTDN+IKN W+T LKK+L
Sbjct: 60  YLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 97/120 (80%), Gaps = 1/120 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR+PCC+KA++ KG W+ EED  L DYI K+G G  W +LP+  GL+RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGC-WRSLPRAAGLQRCGKSCRLRWMN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRP++K G F+EEED +I  L+  +G++WS+IA +LPGRTDN+IKNYWNT +K+KLL R
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSR 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 107/165 (64%), Gaps = 2/165 (1%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           M R PCC    +KKG W+ EED KL  YI  +G GG W  +PQK GLKRCGKSCRLRW N
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGG-WRDIPQKAGLKRCGKSCRLRWTN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YL+P IK G FS EE+ II  L+ S G++WS+IA  LP RTDN+IKNYWNT LKK+L+ +
Sbjct: 60  YLKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQ 119

Query: 121 RKQSNNINGLISTSGQDVN-GVNNGGDENNNSQYSQSLSNSAIER 164
                    L S+S   V+  +N+    +++ QYS+S S   + R
Sbjct: 120 GIDPVTHKPLASSSNPTVDENLNSPNASSSDKQYSRSSSMPFLSR 164

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 94/118 (79%), Gaps = 1/118 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  KG W+ EED +L DYI  +G G  W +LP+  GL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGC-WRSLPKSAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118
           YLRP++K G F+++ED II  L+  +G++WS+IA +LPGRTDN+IKNYWNT +K+KLL
Sbjct: 60  YLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLL 117

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  164 bits (416), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR+PCC+KA+  KG W+ EED +L  YI  +G G  W +LP+  GL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRP++K G F+EEED +I  L+  +G++WS+IA +LPGRTDN+IKNYWNT +++KLL R
Sbjct: 60  YLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSR 119

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
224142279	366	predicted protein [Populus trichocarpa]	0.948	0.950	0.633	1e-121
315115073	359	DNA-binding transcription factor blind 1	0.937	0.958	0.634	1e-120
333101823	359	MYB5 [Gossypium barbadense]	0.937	0.958	0.632	1e-119
225446136	364	PREDICTED: uncharacterized protein LOC10	0.945	0.953	0.631	1e-116
224117618	365	predicted protein [Populus trichocarpa]	0.950	0.956	0.603	1e-115
297735347	365	unnamed protein product [Vitis vinifera]	0.945	0.950	0.630	1e-115
356550758	339	PREDICTED: transcription factor RAX1 [Gl	0.907	0.982	0.613	1e-113
356564858	340	PREDICTED: myb-related protein 306-like	0.910	0.982	0.608	1e-111
255570511	417	r2r3-myb transcription factor, putative	0.874	0.769	0.556	1e-101
449457235	346	PREDICTED: uncharacterized protein LOC10	0.901	0.956	0.583	1e-99

>gi|224142279|ref|XP_002324486.1| predicted protein [Populus trichocarpa] gi|222865920|gb|EEF03051.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/385 (63%), Positives = 291/385 (75%), Gaps = 37/385 (9%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK NVKKGPWSPEEDAKLK YI+++GTGGNWIALPQK+GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKNNVKKGPWSPEEDAKLKAYIDQFGTGGNWIALPQKVGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQS+  N  +S++  D NGV        +S  SQ+LSNSA+ERLQLHMQLQSLQNP+SF
Sbjct: 121 RKQSS--NNRLSSTNPDANGV-------EDSSSSQALSNSALERLQLHMQLQSLQNPISF 171

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPP 240
           YNNP+ WPKLHP QEK++  LQSL++   NP +Q   PS+Q G   Q V + + Q   P 
Sbjct: 172 YNNPALWPKLHPFQEKIL--LQSLSE-ISNPLMQYAFPSTQQG-DAQKV-DIYGQLVDPD 226

Query: 241 SAPQDFPQ------------------STCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQ 282
           +  Q  P+                  S  P+P ++   NVM+   + +A   +  +AA Q
Sbjct: 227 TLQQGHPKFSNSNVVSLENSMNVITSSDSPLPFTNG-KNVMDLTIVPRAGMADQSDAAVQ 285

Query: 283 EVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASS 342
            VS FQ+E+ENFL NNK  GFTAQ + QI +FDCF  +NGS ++++ WW+N+F++KSASS
Sbjct: 286 PVSNFQSELENFL-NNKTSGFTAQGD-QIGEFDCFKEMNGS-RDNMNWWSNDFETKSASS 342

Query: 343 NSWDSTPAIHQSEGMFQDYELGYNI 367
           NSWDST ++ QSEGMFQDYELGYN+
Sbjct: 343 NSWDST-SVLQSEGMFQDYELGYNM 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315115073|gb|ADT80570.1| DNA-binding transcription factor blind 1 [Gossypium hirsutum]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/378 (63%), Positives = 281/378 (74%), Gaps = 34/378 (8%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE+YGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT+LKKKLLGR
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVN--NGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPL 178
           RKQS+NI+GL   S QD N  +   G D+N   Q SQ LSNSA+ERLQLHMQLQSLQNP 
Sbjct: 121 RKQSSNIHGL---SNQDPNDPHQPTGSDDN---QLSQGLSNSAMERLQLHMQLQSLQNPF 174

Query: 179 SFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNL--------QNVLPSSQLGLHEQNVG 230
           SFYNNP+ WPK+HP+ EKMIQN+Q+ N    NPNL             + Q  +H+Q   
Sbjct: 175 SFYNNPALWPKIHPLPEKMIQNMQASN---GNPNLLMQPLLPPNPQPANEQSTVHQQ--- 228

Query: 231 NFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNV--MNSNAMLKANGFEPYNAANQEVSTFQ 288
           ++ E SN+      D     C   +S++D +V   N + ++ + G +   AA Q  S+FQ
Sbjct: 229 DYPEISNTKGLEGLD----NCLDGISASDGSVPFGNGDNLMDSTGTD---AAVQPGSSFQ 281

Query: 289 AEIENFLNNNKA-VGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDS 347
            E++ FLN+  +  G   QE+  + Q DCF  +NGS K+S IWW  +FD+KSASSNSWDS
Sbjct: 282 GELDVFLNHKSSTTGGYPQEDQMVNQLDCFRDINGS-KDSSIWWPTDFDTKSASSNSWDS 340

Query: 348 TPAIHQSEGMFQDYELGY 365
           T ++ QS GMFQD+ELGY
Sbjct: 341 T-SVLQSNGMFQDFELGY 357

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333101823|gb|AEF14025.1| MYB5 [Gossypium barbadense]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/378 (63%), Positives = 280/378 (74%), Gaps = 34/378 (8%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE+YGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT+LKKKLLGR
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVN--NGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPL 178
           RKQS+NI+ L   S QD N  +   G D+N   Q SQ LSNSA+ERLQLHMQLQSLQNP 
Sbjct: 121 RKQSSNIHRL---SNQDPNDPHQPTGSDDN---QLSQGLSNSAMERLQLHMQLQSLQNPF 174

Query: 179 SFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNL--------QNVLPSSQLGLHEQNVG 230
           SFYNNP+ WPK+HP+QEKMIQN+Q+ N    NPNL             + Q  +H+Q   
Sbjct: 175 SFYNNPALWPKIHPLQEKMIQNMQASN---GNPNLLMQPLLPPNPQPANEQSTVHQQ--- 228

Query: 231 NFFEQSNSPPSAPQDFPQSTCPVPVSSTDNNV--MNSNAMLKANGFEPYNAANQEVSTFQ 288
           ++ E SN+      D     C   +S++D +V   N + ++ +   +   AA Q  S+FQ
Sbjct: 229 DYPEISNTKGLEGLD----NCLDGISASDGSVPFGNGDNLMDSTSTD---AAVQPGSSFQ 281

Query: 289 AEIENFLNNNKA-VGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNSWDS 347
            E++ FLN+  +  G   QE+  + Q DCF  +NGS K+S IWW  +FD+KSASSNSWDS
Sbjct: 282 GELDVFLNHKSSTTGGYPQEDQTVNQLDCFRDINGS-KDSSIWWPTDFDAKSASSNSWDS 340

Query: 348 TPAIHQSEGMFQDYELGY 365
           T ++ QS GMFQD+ELGY
Sbjct: 341 T-SVLQSNGMFQDFELGY 357

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446136|ref|XP_002270766.1| PREDICTED: uncharacterized protein LOC100256441 [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/383 (63%), Positives = 287/383 (74%), Gaps = 36/383 (9%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE+YGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKTYIEQYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEED+IIC+LYISIGSRWS+IAAQLPGRTDNDIKNYWNTRLKKKLLG+
Sbjct: 61  YLRPNIKHGGFSEEEDSIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGK 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQS + N L S +GQD       G E+N   YSQ+LSNSA+ERLQLHMQLQSLQ+P +F
Sbjct: 121 RKQS-HFNRL-SVAGQDPKDAT--GVEDN--PYSQALSNSALERLQLHMQLQSLQHPFAF 174

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPP 240
           YNNP+ WPKLHP+QEK+IQNLQ+      +P +Q+  PSS     EQ  G F+E   +  
Sbjct: 175 YNNPALWPKLHPLQEKLIQNLQN---ELPSPLMQHTPPSSDPMGQEQKSG-FYEPPTASI 230

Query: 241 SAPQDFPQSTCP-----------VPVSST-----DNNVMNSNAMLKANGFEPYNAANQEV 284
           +  Q++P++  P           +P S +       N++ +  M K +G +  N A Q V
Sbjct: 231 TLQQEYPKTNNPKGDEFEKSLNVLPSSDSSMAYNSENMVGAPIMSKPDGVDQSNIAQQAV 290

Query: 285 STFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNS 344
           STFQAE+++FL NNK VGF  QEE Q+ + D        +K+SL WW+N+FD+KSASS+S
Sbjct: 291 STFQAELDDFL-NNKMVGFLPQEE-QMTEID-------GSKDSLAWWSNDFDTKSASSHS 341

Query: 345 WDSTPAIHQSEGMFQDYELGYNI 367
           WDST  I QSEGMFQDY LGYN+
Sbjct: 342 WDSTSVI-QSEGMFQDYVLGYNL 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117618|ref|XP_002331681.1| predicted protein [Populus trichocarpa] gi|222874100|gb|EEF11231.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/383 (60%), Positives = 275/383 (71%), Gaps = 34/383 (8%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK NVK+GPWSPEEDAKLK YI+ +GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKNNVKRGPWSPEEDAKLKAYIDHFGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIIC+LYISIGSRWS+IAAQLPGRTDNDIKNYWNTRLKKKLLGR
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQS +IN  IS++  D +GV        +S  SQ+LSN+A+ERLQLHMQLQSLQNP SF
Sbjct: 121 RKQS-SIN-RISSTNPDADGV-------EDSSSSQALSNAALERLQLHMQLQSLQNPNSF 171

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNV--GNFFEQSNS 238
           YNN   WPKLHP QEKM+  LQSL +S  +P +Q   PS Q G  ++ V  G   +    
Sbjct: 172 YNNHVLWPKLHPFQEKMV--LQSLKESF-SPLMQYAFPSPQQGDEQKVVMYGQLVDSDTR 228

Query: 239 PPSAPQ--------------DFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEV 284
               P+                  S   +P +S D + M+   + +A   EP +AA Q V
Sbjct: 229 QQGHPKFSNSSVVGLENSLNGITSSDSYIPFTSGD-HAMDLTIVSRAGVVEPADAAAQPV 287

Query: 285 STFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSNS 344
             FQ+E+ENFL N+K  GFT+QE+ +I +F CF  +N    E + WW+N+F+ K ASSNS
Sbjct: 288 PNFQSELENFL-NSKTSGFTSQED-KIGEFGCFKEMNRYG-EGMNWWSNDFEIK-ASSNS 343

Query: 345 WDSTPAIHQSEGMFQDYELGYNI 367
           WDS  ++ +SEGMF DYELGYN+
Sbjct: 344 WDSA-SVLKSEGMFHDYELGYNM 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735347|emb|CBI17787.3| unnamed protein product [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/384 (63%), Positives = 287/384 (74%), Gaps = 37/384 (9%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGKSCRLRWL 59
           MGRAPCCDKANVKKGPWSPEEDAKLK YIE+YGTGGNWIALPQKIG LKRCGKSCRLRWL
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKTYIEQYGTGGNWIALPQKIGRLKRCGKSCRLRWL 60

Query: 60  NYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG 119
           NYLRPNIKHGGFSEEED+IIC+LYISIGSRWS+IAAQLPGRTDNDIKNYWNTRLKKKLLG
Sbjct: 61  NYLRPNIKHGGFSEEEDSIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLG 120

Query: 120 RRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLS 179
           +RKQS + N L S +GQD       G E+N   YSQ+LSNSA+ERLQLHMQLQSLQ+P +
Sbjct: 121 KRKQS-HFNRL-SVAGQDPKDAT--GVEDN--PYSQALSNSALERLQLHMQLQSLQHPFA 174

Query: 180 FYNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSP 239
           FYNNP+ WPKLHP+QEK+IQNLQ+      +P +Q+  PSS     EQ  G F+E   + 
Sbjct: 175 FYNNPALWPKLHPLQEKLIQNLQN---ELPSPLMQHTPPSSDPMGQEQKSG-FYEPPTAS 230

Query: 240 PSAPQDFPQSTCP-----------VPVSST-----DNNVMNSNAMLKANGFEPYNAANQE 283
            +  Q++P++  P           +P S +       N++ +  M K +G +  N A Q 
Sbjct: 231 ITLQQEYPKTNNPKGDEFEKSLNVLPSSDSSMAYNSENMVGAPIMSKPDGVDQSNIAQQA 290

Query: 284 VSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASSN 343
           VSTFQAE+++FL NNK VGF  QEE Q+ + D        +K+SL WW+N+FD+KSASS+
Sbjct: 291 VSTFQAELDDFL-NNKMVGFLPQEE-QMTEID-------GSKDSLAWWSNDFDTKSASSH 341

Query: 344 SWDSTPAIHQSEGMFQDYELGYNI 367
           SWDST  I QSEGMFQDY LGYN+
Sbjct: 342 SWDSTSVI-QSEGMFQDYVLGYNL 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550758|ref|XP_003543751.1| PREDICTED: transcription factor RAX1 [Glycine max]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/373 (61%), Positives = 272/373 (72%), Gaps = 40/373 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDA LK YIEK GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGF+EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR
Sbjct: 61  YLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQSN        S +D    NNG +EN+   YS +LS+SA+ERLQLHMQLQSLQNP SF
Sbjct: 121 RKQSN-------LSAKD---TNNGIEENS---YSNALSSSALERLQLHMQLQSLQNPFSF 167

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPP 240
           YNNP+ WPKLHP QEKMIQ+LQSLN    +P +QN LP+S    H   + N         
Sbjct: 168 YNNPALWPKLHPFQEKMIQSLQSLNDG-SSPVMQNALPNSP---HVHLLEN--------- 214

Query: 241 SAPQDFPQSTCPVP--VSSTDNNVMNSNAMLKANGF-EPYNAAN-QEVSTFQAEIENFLN 296
                 P S   VP   S +  N M+S+   ++    E  N+   Q++   Q E+++ L 
Sbjct: 215 -----IPLSNGGVPFVASGSSKNPMHSSLAPRSEAIHEQTNSVGFQQLGALQTELDDIL- 268

Query: 297 NNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSK--SASSNSWDSTPAIHQS 354
           NN+ +G+   E++ +A FDCF  +N S+K+SLIWW+N+ D+K  S++S    +TPA+   
Sbjct: 269 NNRIMGYVPHEDHDMAGFDCFREMN-SSKDSLIWWSNDSDTKSVSSNSWDSSATPAL-LP 326

Query: 355 EGMFQDYELGYNI 367
           +GMFQDYELGY++
Sbjct: 327 QGMFQDYELGYSL 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564858|ref|XP_003550664.1| PREDICTED: myb-related protein 306-like [Glycine max]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/373 (60%), Positives = 267/373 (71%), Gaps = 39/373 (10%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDK NVKKGPWSPEEDA LK YIEK GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKNNVKKGPWSPEEDATLKTYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGF+EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR
Sbjct: 61  YLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQSN        S +D    NNG +EN+   YS +LS SA+ERLQLHMQLQSLQNP SF
Sbjct: 121 RKQSN-------FSSKD---TNNGIEENS---YSNALSTSALERLQLHMQLQSLQNPFSF 167

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPP 240
           YNNP+ WPKLHP+QEKMI +LQSLN    NP +QN+    Q+ L E          N P 
Sbjct: 168 YNNPALWPKLHPIQEKMIHSLQSLNDG-SNPVMQNINNPDQVHLLE----------NIPL 216

Query: 241 SAPQDFPQSTCPVPVSSTDNNVMNSNAMLKANGFEPY---NAANQEVSTFQAEIENFLNN 297
           S       S  P   S +  N M+S+   ++         N   Q++   Q E++  L N
Sbjct: 217 S------NSGVPFVASGSSTNPMHSSLAPRSEAIHVQTNNNVGFQQLGALQNELDEIL-N 269

Query: 298 NKAVGFTAQEENQIAQ-FDCFNALNGSNKESLIWWANEFDSK--SASSNSWDSTPAIHQS 354
           N+ +G+  QE++ +A  FDCF  +N S K+SLIWW+N+ D+K  S++S    +TPA+  +
Sbjct: 270 NRTMGYVPQEDHDMASGFDCFREMNDS-KDSLIWWSNDSDTKSASSNSWESSATPAL-LT 327

Query: 355 EGMFQDYELGYNI 367
           +GMFQDYELGY++
Sbjct: 328 QGMFQDYELGYSL 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570511|ref|XP_002526213.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223534452|gb|EEF36154.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/386 (55%), Positives = 263/386 (68%), Gaps = 65/386 (16%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDA LK YIE+YGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 78  MGRAPCCDKANVKKGPWSPEEDATLKAYIEQYGTGGNWIALPQKIGLKRCGKSCRLRWLN 137

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIICSLYISIGSR                               
Sbjct: 138 YLRPNIKHGGFSEEEDNIICSLYISIGSR------------------------------- 166

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQ+N      +++  + N + +          S +LSNSA+ERLQLHMQLQSLQNPLS 
Sbjct: 167 RKQANINRPSSASTPAESNRIEDASS-------SMALSNSALERLQLHMQLQSLQNPLSV 219

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPNLQNVLPSSQLGLHEQNVGNFFEQSNSPP 240
           YNNP+ WPKLHP+QEK++  LQS+ ++  N  +Q +LP+ Q G HEQ +  + + S S  
Sbjct: 220 YNNPALWPKLHPLQEKLL--LQSMAETS-NTIMQQLLPTPQQG-HEQKLDIYEQLSGSIA 275

Query: 241 SAPQDFPQSTCPV---------PVSSTD--------NNVMNSNAML-KANGFEPYNAANQ 282
              Q++P+   P           ++S+D        N+V +S AM  +ANG +   AA Q
Sbjct: 276 LENQNYPRFDNPKVDGLENSFNAITSSDSSVPFNNGNSVADSIAMEGRANGVDQSVAAIQ 335

Query: 283 EVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWANEFDSKSASS 342
            VSTFQAE+ENFL +NK  GF +QE+ QI +FDCF  +NGS K+SL+WW+N+F++KSASS
Sbjct: 336 PVSTFQAELENFL-SNKTSGFVSQED-QITEFDCFREMNGS-KDSLVWWSNDFETKSASS 392

Query: 343 NSWDSTPAIHQSEGMFQDY-ELGYNI 367
           NSWDST ++ QSEGMFQDY ELGYN+
Sbjct: 393 NSWDST-SVLQSEGMFQDYHELGYNM 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457235|ref|XP_004146354.1| PREDICTED: uncharacterized protein LOC101208004 [Cucumis sativus] gi|449510654|ref|XP_004163724.1| PREDICTED: uncharacterized protein LOC101225084 [Cucumis sativus]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 223/382 (58%), Positives = 269/382 (70%), Gaps = 51/382 (13%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGRAPCCDKANVKKGPWSPEEDA+LK YIE++GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDARLKAYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRPNIKHGGFSEEEDNIIC+LYISIGSRWS+IAAQLPGRTDNDIKNYWNTRLKKKLLG+
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGK 120

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
           RKQSN+ NG+ S+S             +NN    + LSNSA+ERLQLHMQLQ  QNP SF
Sbjct: 121 RKQSNSNNGINSSS-----------SSSNNDDPKELLSNSALERLQLHMQLQGFQNPFSF 169

Query: 181 YNNPSFWPKLHPVQEKMIQNLQSLNQSCQNPN-LQNVLPSSQLGLHEQNVGNFFEQSNSP 239
           Y +P  WPKLHPVQEK++Q LQSLN + QNPN LQ+    +QL              + P
Sbjct: 170 YTHPQLWPKLHPVQEKIVQTLQSLNNNTQNPNDLQSTTTDTQL------------LQSHP 217

Query: 240 PSAPQDF---PQST-------CPVPVSSTDNNVMNSNAMLKANGFEPYNAANQEVSTFQA 289
           P A  DF   PQ+        C +P +S  + V +S             + + +VS F  
Sbjct: 218 PKAATDFFIHPQTNTNSISLPCKIPENSDHHQVESS-------------SGHHQVSNFMQ 264

Query: 290 EIENFL-NNNKAVGFTAQEENQIAQFDCFNALNGSNKESLIWWA--NEFDSK-SASSNSW 345
            ++ FL ++NK  GF AQ + Q+A+FD F  + G +K+SLIWW   NE D + +ASS++ 
Sbjct: 265 VVDGFLEDHNKGEGFMAQSDEQVAEFDWFKEVGGCSKDSLIWWGQNNEHDMRSAASSSNS 324

Query: 346 DSTPAIHQSEGMFQDYELGYNI 367
             + ++ QSE MFQD+ELGYN+
Sbjct: 325 WDSSSVLQSELMFQDFELGYNL 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2174557	333	MYB36 "myb domain protein 36"	0.506	0.558	0.695	1.8e-69
TAIR|locus:2169970	374	MYB68 "myb domain protein 68"	0.302	0.296	0.945	2.5e-58
TAIR|locus:2097335	310	MYB84 "myb domain protein 84"	0.302	0.358	0.945	8.4e-58
TAIR|locus:2057931	298	RAX2 "REGULATOR OF AXILLARY ME	0.302	0.372	0.873	2.9e-56
TAIR|locus:2181146	329	MYB37 "myb domain protein 37"	0.302	0.337	0.837	6.1e-54
TAIR|locus:2137589	305	MYB87 "myb domain protein 87"	0.302	0.363	0.855	6.3e-53
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.299	0.339	0.660	3.6e-42
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.299	0.327	0.639	1.1e-40
TAIR|locus:2161820	320	MYB80 [Arabidopsis thaliana (t	0.299	0.343	0.657	2.6e-40
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.291	0.275	0.638	1.5e-39

TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 135/194 (69%), Positives = 143/194 (73%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEED KLKDYI+KYGTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTXXXXXXXXX 120
             YLRPNIKHGGFSEEED II SLYISIGSRWSIIAAQLPGRTDNDIKNYWNT         
Sbjct:    61 YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query:   121 XXQSNNINGLISTXXXXXXXXXXXXXXXXXXXXXXXXXXXAIERLQLHMQLQSLQNPLS- 179
               Q N  + +  +                           A+ERLQLHMQLQ+LQ+P S 
Sbjct:   121 QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNS-------ALERLQLHMQLQNLQSPFSS 173

Query:   180 FYNNPSFWPKLHPV 193
             FYNNP  WPKLHP+
Sbjct:   174 FYNNPILWPKLHPL 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2169970 MYB68 "myb domain protein 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 105/111 (94%), Positives = 109/111 (98%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEEDAKLKDYIE  GTGGNWIALPQKIGL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRPNIKHGGFSEEEDNIIC+LY++IGSRWSIIAAQLPGRTDNDIKNYWNT
Sbjct:    61 YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2097335 MYB84 "myb domain protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 105/111 (94%), Positives = 108/111 (97%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVKKGPWSPEEDAKLK YIE  GTGGNWIALPQKIGLKRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRPNIKHGGFSEEE+NIICSLY++IGSRWSIIAAQLPGRTDNDIKNYWNT
Sbjct:    61 YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2057931 RAX2 "REGULATOR OF AXILLARY MERISTEMS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
 Identities = 97/111 (87%), Positives = 103/111 (92%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDKANVK+GPWSPEEDAKLKDYIEK GTGGNWIALP K GL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRPNI+HG F+EEEDNII SL+ SIGSRWS+IAA L GRTDNDIKNYWNT
Sbjct:    61 YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IMP

TAIR|locus:2181146 MYB37 "myb domain protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 93/111 (83%), Positives = 100/111 (90%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VK+GPWSPEED+KL+DYIEKYG GGNWI+ P K GL+RCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRPNIKHG FSEEED II SL+ +IGSRWSIIAA LPGRTDNDIKNYWNT
Sbjct:    61 YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2137589 MYB87 "myb domain protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 95/111 (85%), Positives = 104/111 (93%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGRAPCCDK  VKKGPWS EEDA LK YIEK+GTG NWI+LPQ+IG+KRCGKSCRLRWLN
Sbjct:     1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRPN+KHGGF++EED IICSLYI+IGSRWSIIA+QLPGRTDNDIKNYWNT
Sbjct:    61 YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 74/112 (66%), Positives = 89/112 (79%)

Query:     1 MGRAPCCDKAN-VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWL 59
             MGR+PCC+K N +KKGPW+PEED KL DYI  +G G NW  LP+  GL+RCGKSCRLRW 
Sbjct:     1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYG-NWRTLPKNAGLQRCGKSCRLRWT 59

Query:    60 NYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             NYLRP+IK G FS EE+  I  L+  +G++WS IAA+LPGRTDN+IKNYWNT
Sbjct:    60 NYLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNT 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 71/111 (63%), Positives = 90/111 (81%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGR+PCCD+  +KKGPW+ EED KL D+I+K+G G +W ALP++ GL RCGKSCRLRW N
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHG-SWRALPKQAGLNRCGKSCRLRWTN 59

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRP+IK G F+EEE+  I +L+  +G++WS IA  LPGRTDN+IKNYWNT
Sbjct:    60 YLRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNT 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2161820 MYB80 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 73/111 (65%), Positives = 90/111 (81%)

Query:     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
             MGR PCC+K NVK+G W+PEED KL  YI ++GT  NW  +P+  GL+RCGKSCRLRW N
Sbjct:     1 MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTN 59

Query:    61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             YLRP++KHG FSE E++II   +  +G+RWS+IAAQLPGRTDND+KNYWNT
Sbjct:    60 YLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNT 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 69/108 (63%), Positives = 86/108 (79%)

Query:     4 APCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63
             +PCCDKA +KKGPW+PEED KL  YIE++G G +W +LP+K GL+RCGKSCRLRW NYLR
Sbjct:    47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLQRCGKSCRLRWTNYLR 105

Query:    64 PNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
             P+IK G F+ +E+  I  L+  +G+RWS IA  LP RTDN+IKNYWNT
Sbjct:   106 PDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNT 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031433001 SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (366 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-44
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-43
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	9e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-07
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.003

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  158 bits (401), Expect = 2e-44
 Identities = 99/263 (37%), Positives = 143/263 (54%), Gaps = 30/263 (11%)

Query: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60
           MGR  CC K  ++KG WSPEED KL  +I KYG G  W ++P++ GL+RCGKSCRLRW+N
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWIN 59

Query: 61  YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR 120
           YLRP++K G FS++E+N+I  L+  +G+RWS IAAQLPGRTDN+IKN WN+ LKKKL  R
Sbjct: 60  YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119

Query: 121 RKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSLQNPLSF 180
                   G+   + + ++ V NG D+N  +      ++S +      ++  + +   + 
Sbjct: 120 --------GIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAAL 171

Query: 181 YNNPSFWPKLHPVQEKMI-----QNLQSLNQSCQNPNLQNVLPSSQLGL------HEQN- 228
               S        Q ++      +   S N +  N NL    P+    L      HE + 
Sbjct: 172 QEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTSHESST 231

Query: 229 --------VGNF-FEQSNSPPSA 242
                   VG+F F+Q N   +A
Sbjct: 232 TSCRPSDLVGHFPFQQLNYASNA 254

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  151 bits (382), Expect = 1e-43
 Identities = 66/114 (57%), Positives = 90/114 (78%), Gaps = 1/114 (0%)

Query: 5   PCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
           PCC K  +K+GPW+ EED  L  +I+K G G  W +LP++ GL RCGKSCRLRW+NYLRP
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRP 74

Query: 65  NIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL 118
           ++K GG + +E+++I  L+  +G+RWS+IA ++PGRTDN+IKNYWNT L+KKLL
Sbjct: 75  SVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.2 bits (160), Expect = 5e-14
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62
          +GPW+PEED  L + ++K+G  GNW  + + +   R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGN-GNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 11  NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70
             K G W   ED  LK  ++K G   NW  +   +     GK    RW N+L P +K   
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKN 74

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWN 110
           +SEEED  +  L   +G++WS IA     RT       + 
Sbjct: 75  WSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEED 76
          W+ EED KL   +EKYG   +W  + +++G  R   +CR RW   LRP    G +++EED
Sbjct: 1  WTEEEDEKLLKLVEKYG--NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEED 56

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          KG W+ EED  L + ++KYG   NW  + +++   R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 68  HGGFSEEEDNIICSLYISIGSR-WSIIAAQLPGRTDNDIKNYWNTRL 113
            G ++ EED ++       G+  WS IA  LPGRTDN  KN WN  L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL 62
          PW+ EED  L + ++KYG   NW  + +++   R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 71  FSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRL 113
           ++EEED ++       G   W  IA +LPGRT    +  W   L
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
           ++EEED  +  L    G+ W  IA +L GRT +  ++ W  +L+ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 16 PWSPEEDAKLKDYIEKYGTGGNW 38
           W+ EED  L + +EKYG  GNW
Sbjct: 2  KWTDEEDEALVEGVEKYGV-GNW 23

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.71
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.61
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.47
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.37
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.24
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
PLN03212	249	Transcription repressor MYB5; Provisional	99.17
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.08
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.08
PLN03091	459	hypothetical protein; Provisional	99.02
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.94
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.77
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.66
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.29
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.46
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.43
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.39
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.37
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.35
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.28
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.28
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.98
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.8
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.59
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.56
PRK13923	170	putative spore coat protein regulator protein YlbO	96.39
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.33
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.15
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.82
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.45
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.29
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.17
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	94.93
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.8
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.42
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.17
PRK13923	170	putative spore coat protein regulator protein YlbO	93.13
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	92.14
KOG1194	534	consensus Predicted DNA-binding protein, contains	92.02
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.85
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.03
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.96
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.78
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	85.08

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=305.89  Aligned_cols=120  Identities=62%  Similarity=1.159  Sum_probs=116.6

Q ss_pred             CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHH
Q 017727            1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC   80 (367)
Q Consensus         1 mGR~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll   80 (367)
                      |||++||+|..++||+||+|||++|+++|++||. .+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~-~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL   79 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII   79 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCc-CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999998 799999999977999999999999999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727           81 SLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR  121 (367)
Q Consensus        81 eLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr  121 (367)
                      +++++||++|++||++|||||+++||+||+.+++++++.+.
T Consensus        80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~  120 (459)
T PLN03091         80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (459)
T ss_pred             HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999987654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.4e-36  Score=285.45  Aligned_cols=118  Identities=56%  Similarity=1.175  Sum_probs=113.7

Q ss_pred             CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHH
Q 017727            3 RAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSL   82 (367)
Q Consensus         3 R~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleL   82 (367)
                      |+|||+|++++|++||+|||++|+++|++||. .+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|+++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~-~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel   92 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGE-GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL   92 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCc-ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence            78999999999999999999999999999998 69999999997799999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727           83 YISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR  121 (367)
Q Consensus        83 v~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr  121 (367)
                      +..||++|+.||++|||||+++||+||+.++++++++..
T Consensus        93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999999999999887644

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.1e-35  Score=277.67  Aligned_cols=111  Identities=56%  Similarity=1.033  Sum_probs=106.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 017727           10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSR   89 (367)
Q Consensus        10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~k   89 (367)
                      +.+.||+||+|||++|+++|++||. ++|..||+.+|++|++|+||+||.|||+|++++|.||+|||++|++|++.+|++
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~-~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGK-HNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCC-CCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            4455899999999999999999999 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727           90 WSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR  121 (367)
Q Consensus        90 WskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr  121 (367)
                      |+.||++|||||++.|||+|++++|+|+.+..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987654

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=2.1e-19  Score=187.24  Aligned_cols=112  Identities=24%  Similarity=0.425  Sum_probs=103.6

Q ss_pred             CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHH
Q 017727            1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC   80 (367)
Q Consensus         1 mGR~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~Ll   80 (367)
                      |||......|++++|+||++||.+|+.+|.+||. ..|.+|-+.++ +|+..|||+||+|.|+...|.+.||-.||+.|+
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~  424 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL  424 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCc-cchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence            6899999999999999999999999999999998 79999999999 999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           81 SLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        81 eLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      .+|.+|| ++|.+||..||.||..|.+.|=...+.
T Consensus       425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~  459 (939)
T KOG0049|consen  425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA  459 (939)
T ss_pred             HHHHHHccchHHHHHHHccccchhHHHHHHHHHHH
Confidence            9999999 599999999999999666554444343

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.71  E-value=9.2e-18  Score=175.07  Aligned_cols=113  Identities=24%  Similarity=0.451  Sum_probs=104.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch------------------------------
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL------------------------------   56 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~------------------------------   56 (367)
                      ...|.++|-.|++|||++|+.+...+|. .+|.+||..+|++|++.||..                              
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~-~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~  324 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKF-VSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITS  324 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhcccc-ccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhh
Confidence            3578999999999999999999999998 799999999998899999977                              


Q ss_pred             ------------------------hhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHH
Q 017727           57 ------------------------RWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNT  111 (367)
Q Consensus        57 ------------------------RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~  111 (367)
                                              ||...|+|.+++|+||.+||.+|+.+|.+||. .|.+|-..+|||++.|||.||.+
T Consensus       325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n  404 (939)
T KOG0049|consen  325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN  404 (939)
T ss_pred             ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence                                    77888999999999999999999999999996 59999999999999999999999


Q ss_pred             HhhhHhhhh
Q 017727          112 RLKKKLLGR  120 (367)
Q Consensus       112 ~Lkkkl~~r  120 (367)
                      .|..+.+..
T Consensus       405 vL~~s~K~~  413 (939)
T KOG0049|consen  405 VLNRSAKVE  413 (939)
T ss_pred             HHHHhhccC
Confidence            998776543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.61  E-value=3.5e-16  Score=117.27  Aligned_cols=60  Identities=42%  Similarity=0.916  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHH
Q 017727           17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNII   79 (367)
Q Consensus        17 WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~L   79 (367)
                      ||+|||++|+.+|.+||.  +|..||+.|+ .|++.+|+.||.++|+|.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN--DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS---HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc--CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997  8999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=4.5e-15  Score=153.57  Aligned_cols=109  Identities=30%  Similarity=0.503  Sum_probs=103.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG   87 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G   87 (367)
                      .+..++.|.|+..||+.|..+|++||+ .+|.+||..+. .|++++|+.||.++++|.++++.|+.|||+.|+.+..++|
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~-nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~   91 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG   91 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhccc-ccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC
Confidence            346788999999999999999999999 68999999998 6999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727           88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      .+|+.||..+++||..+|.+||...+.....
T Consensus        92 ~~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          92 TQWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             chhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999998887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.5e-14  Score=148.43  Aligned_cols=107  Identities=29%  Similarity=0.561  Sum_probs=101.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRW   90 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kW   90 (367)
                      -++-|.|+.-||+.|..+|.+||. ..|..|++.+. ..+++||+.||..+|+|.|++..|+.|||++|+.+...+...|
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~-nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGK-NQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcch-HHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            367889999999999999999999 79999999998 8899999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727           91 SIIAAQLPGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        91 skIAk~LPGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      ..|+..| |||++||-.||+.++-......
T Consensus        82 rtIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   82 RTIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             chHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            9999999 9999999999999998776543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.37  E-value=4.5e-13  Score=140.46  Aligned_cols=105  Identities=25%  Similarity=0.572  Sum_probs=94.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC--CCCCCCCHHHHHHHHHHHH------
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN--IKHGGFSEEEDNIICSLYI------   84 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~--ikkg~WT~EED~~LleLv~------   84 (367)
                      ++|.||+||++.|..+|.++|.  .|..|++.|+  |.+..||+||+++..+.  .+++.||.||++.|+++|.      
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~  458 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN--DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREA  458 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc--cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999998  9999999996  99999999999999987  5999999999999999995      


Q ss_pred             -Hh-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhhh
Q 017727           85 -SI-------------------GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRR  121 (367)
Q Consensus        85 -~~-------------------G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~rr  121 (367)
                       ++                   +-+|+.|++.+..|+..|||.+|+.++.......+
T Consensus       459 ~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~  515 (607)
T KOG0051|consen  459 LQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR  515 (607)
T ss_pred             hcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence             33                   12699999999999999999999999987765443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=8.3e-13  Score=95.64  Aligned_cols=46  Identities=30%  Similarity=0.588  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 017727           68 HGGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNTRL  113 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~k-WskIAk~LP-GRT~~qcKnRW~~~L  113 (367)
                      +++||+|||++|++++.+||.. |..||..|| +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999998 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=6.4e-13  Score=96.25  Aligned_cols=48  Identities=42%  Similarity=0.882  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL   62 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L   62 (367)
                      |++||+|||++|+++|.+||. .+|..||..|+.+|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-DNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998 469999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.24  E-value=9.2e-12  Score=93.29  Aligned_cols=46  Identities=33%  Similarity=0.653  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           71 FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        71 WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      ||+|||.+|+++|..||++|..||++|+.||..+|++||+..|+++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            9999999999999999999999999996699999999999977644

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=3.2e-11  Score=83.99  Aligned_cols=47  Identities=40%  Similarity=0.792  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           68 HGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.17  E-value=2.7e-11  Score=115.65  Aligned_cols=58  Identities=22%  Similarity=0.408  Sum_probs=53.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHHHHHHHhhhHhhhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQL-PGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~L-PGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.|||.||.++|++.+.+.
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kg   79 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG   79 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccC
Confidence            3578999999999999999999999 5899999998 69999999999999999988753

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.08  E-value=7.5e-11  Score=111.49  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHhhhh
Q 017727           64 PNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLP-GRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        64 P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LP-GRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      +.+.+|+||+|||.+|+++|++||. +|..||+.++ +|++++||-||.++|++.|+++
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg   63 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG   63 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC
Confidence            4456899999999999999999995 6999999999 9999999999999999998753

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.08  E-value=3e-10  Score=78.07  Aligned_cols=44  Identities=34%  Similarity=0.689  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727           70 GFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRL  113 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~L  113 (367)
                      +||.+||..|+.++..|| .+|..||+.|++||..+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=99.02  E-value=2.3e-10  Score=116.61  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=52.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC-CCCCHHHHHHHHHHHhhhHhhhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQL-PGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~L-PGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      +..+++++||+|||++|+++|.+||. +|..||+.+ +|||+.|||.||.++|++.|+++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKg   68 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG   68 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCC
Confidence            36789999999999999999999995 799999998 59999999999999999887643

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.94  E-value=3.9e-10  Score=78.47  Aligned_cols=48  Identities=40%  Similarity=0.888  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      +++||++||.+|+.++.+||. .+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~-~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            478999999999999999995 49999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.77  E-value=2.7e-09  Score=73.27  Aligned_cols=45  Identities=42%  Similarity=0.904  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727           16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL   62 (367)
Q Consensus        16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L   62 (367)
                      +||+|||..|+.++.+||. .+|..||..++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~-~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc-CCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            5999999999999999995 59999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.66  E-value=2.8e-08  Score=104.89  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=83.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--------------CC--------CceeecccccCccCccccchhhcccccCCC-CCC
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGT--------------GG--------NWIALPQKIGLKRCGKSCRLRWLNYLRPNI-KHG   69 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~--------------~~--------nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~i-kkg   69 (367)
                      +-+.|++|||+.|-..|..|-.              ..        -|..|...|+ -|+.+.+..+-++..+|-- ++|
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~rg  385 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKRG  385 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccccC
Confidence            3488999999999999997711              01        2566777788 5999988774334444422 999


Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           70 GFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      .||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+..
T Consensus       386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            9999999999999999999999999999 999999999999887764

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.29  E-value=7.2e-08  Score=100.65  Aligned_cols=95  Identities=22%  Similarity=0.567  Sum_probs=83.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccC--CCCCCCCCHHHHHHHHHHHHHhC---
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP--NIKHGGFSEEEDNIICSLYISIG---   87 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P--~ikkg~WT~EED~~LleLv~~~G---   87 (367)
                      .+|.||+||++.|..++..+|.  .|..|...+  +|-+..||+||++|..+  .+++++|+.||+.+|...+...-   
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~~--~w~~ig~~~--~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHGG--SWTEIGKLL--GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             hhccCccccccccccccccccc--hhhHhhhhh--ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence            4789999999999999999997  999999887  49999999999999988  68899999999999998887432   


Q ss_pred             -----CCHHHHHhhCCCCCHHHHHHHHHH
Q 017727           88 -----SRWSIIAAQLPGRTDNDIKNYWNT  111 (367)
Q Consensus        88 -----~kWskIAk~LPGRT~~qcKnRW~~  111 (367)
                           -.|..|+..+++|....|+..+.+
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~  394 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKYGV  394 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCcccc
Confidence                 269999999998888888765543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.46  E-value=7.4e-05  Score=57.06  Aligned_cols=49  Identities=10%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCc---eeecccccCcc-Cccccchhhcccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNW---IALPQKIGLKR-CGKSCRLRWLNYL   62 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW---~~IA~~lg~~R-s~kQCR~RW~n~L   62 (367)
                      ++-.||+||..+++++|+.+|. ++|   ..|++.|+..| +..||+.+...|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~-g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGG-PDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999997 799   99999987566 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.43  E-value=0.00023  Score=73.09  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           65 NIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      .+-...||.+|+.+|++++..|| ++|..||.++..||..+|+.+|.++.-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            45567899999999999999999 899999999999999999999987653

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.00014  Score=76.14  Aligned_cols=55  Identities=27%  Similarity=0.479  Sum_probs=51.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727           66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      ++-|.|+.-||++|..+|.+||. .|++|++.++-.|+.||++||...+.+.|++-
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~t   60 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKT   60 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhh
Confidence            57789999999999999999995 79999999999999999999999999988754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.37  E-value=0.00025  Score=64.58  Aligned_cols=52  Identities=21%  Similarity=0.394  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           67 KHGGFSEEEDNIICSLYISI---GS----RWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~---G~----kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      +...||.|||.+|-+.|-+|   |+    -+..+++.| +||+.+|.-|||..+|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            56789999999999999887   43    499999999 999999999999999988753

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.35  E-value=0.00057  Score=52.20  Aligned_cols=46  Identities=11%  Similarity=0.175  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 017727           68 HGGFSEEEDNIICSLYISIGS-RW---SIIAAQLP-GR-TDNDIKNYWNTRL  113 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~-kW---skIAk~LP-GR-T~~qcKnRW~~~L  113 (367)
                      +-.||+||..+.++++..+|. +|   ..|++.|. .| |..||+.+...+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            557999999999999999997 99   99999884 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.28  E-value=0.00057  Score=64.24  Aligned_cols=101  Identities=23%  Similarity=0.401  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeeccccc--CccCccccchhhcccc-cCCC--------------------CCCCCC
Q 017727           16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIG--LKRCGKSCRLRWLNYL-RPNI--------------------KHGGFS   72 (367)
Q Consensus        16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg--~~Rs~kQCR~RW~n~L-~P~i--------------------kkg~WT   72 (367)
                      +|++++|-.|+.+|.. |.  +-..|+..+.  ..-|-..+.+||+..| +|.+                    .+-+||
T Consensus         1 rW~~~DDl~Li~av~~-~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS   77 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQ-TN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFS   77 (199)
T ss_pred             CCCchhhHHHHHHHHH-hc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCC
Confidence            6999999999999987 33  5666655443  2345677888998765 4433                    356899


Q ss_pred             HHHHHHHHHHHHHhCC---CHHHHHh----hC-CCCCHHHHHHHHHHHhhhHhhh
Q 017727           73 EEEDNIICSLYISIGS---RWSIIAA----QL-PGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        73 ~EED~~LleLv~~~G~---kWskIAk----~L-PGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      .+|+++|.........   .+.+|=.    .| ++||+.++.++|..+.+..+..
T Consensus        78 ~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   78 KEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            9999999997766543   5777643    23 7899999999999887777763

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.28  E-value=0.0001  Score=75.66  Aligned_cols=90  Identities=23%  Similarity=0.434  Sum_probs=64.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc-cCCCCCCCCC-------HHHHHHHHHH
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL-RPNIKHGGFS-------EEEDNIICSL   82 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L-~P~ikkg~WT-------~EED~~LleL   82 (367)
                      .+-...||.+|+-+|++++..||. |||..||.++| .|+...|+++|.+++ +..+-.-+|.       ..||...-.-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~-GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~  146 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGF-GNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKN  146 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCC-CcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccc
Confidence            345678999999999999999999 89999999999 999999999999865 3333222322       2233333222


Q ss_pred             -HHHhCC-------------CHHHHHhhCCCCCH
Q 017727           83 -YISIGS-------------RWSIIAAQLPGRTD  102 (367)
Q Consensus        83 -v~~~G~-------------kWskIAk~LPGRT~  102 (367)
                       +..++.             .=.+|+.+||+|.+
T Consensus       147 ~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d  180 (438)
T KOG0457|consen  147 RAEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD  180 (438)
T ss_pred             ccccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence             222221             24688999999864

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.98  E-value=0.00074  Score=53.62  Aligned_cols=49  Identities=27%  Similarity=0.506  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 017727           68 HGGFSEEEDNIICSLYIS------IG--S------RWSIIAAQL----PGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~------~G--~------kWskIAk~L----PGRT~~qcKnRW~~~Lkkk  116 (367)
                      +..||.+|...||+++..      ++  +      -|..||..|    ..||+.||+++|+++.+.-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      22  1      399999987    4699999999999966553

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.80  E-value=0.002  Score=50.54  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------C-CHHHHHhhCC-CCCHHHHHHHHHHHhhhHhh
Q 017727           68 HGGFSEEEDNIICSLYISIG--------S-RWSIIAAQLP-GRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G--------~-kWskIAk~LP-GRT~~qcKnRW~~~Lkkkl~  118 (367)
                      +.+||.|||.+|+..|+.+.        + =|.++++.-| .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            46899999999999997642        1 2999999887 99999999999988877643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.59  E-value=0.0029  Score=66.72  Aligned_cols=46  Identities=11%  Similarity=0.217  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      .++.||++|..+|++++..||..|.+||.++.+||..||--++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999999988654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.56  E-value=0.0027  Score=66.07  Aligned_cols=45  Identities=13%  Similarity=0.155  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      ...||.+|..+|++.+..||..|.+||+++..||..||--||-++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.39  E-value=0.0044  Score=57.03  Aligned_cols=51  Identities=16%  Similarity=0.360  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-------CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           66 IKHGGFSEEEDNIICSLYISIGS-------RWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~-------kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      .+...||.|||.+|-+.|..|+.       -...++..| +||..+|..||+..++++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            35679999999999999988874       277888888 9999999999999999764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.33  E-value=0.0015  Score=68.04  Aligned_cols=46  Identities=28%  Similarity=0.628  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      ....||.+|..+|++.|+.||.  +|.+||.++| +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD--dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD--DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh--hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5668999999999999999997  9999999999 99999999999774

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.15  E-value=0.0035  Score=66.19  Aligned_cols=49  Identities=24%  Similarity=0.639  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727           10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus        10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      ....++.||.+|+.+|+++|++||.  +|.+||.+++ .|+..||-.++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d--dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD--DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc--cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3456788999999999999999998  9999999999 99999999998764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.82  E-value=0.022  Score=44.55  Aligned_cols=48  Identities=31%  Similarity=0.471  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----------------CHHHHHhhC-----CCCCHHHHHHHHHHHhhh
Q 017727           68 HGGFSEEEDNIICSLYISIGS-----------------RWSIIAAQL-----PGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~-----------------kWskIAk~L-----PGRT~~qcKnRW~~~Lkk  115 (367)
                      ...||.+|.++|++++.+|..                 -|..|+..|     +.||..+||.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999988631                 399999877     369999999999987654

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.45  E-value=0.039  Score=62.91  Aligned_cols=99  Identities=19%  Similarity=0.381  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------h-------------------------------
Q 017727           16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------R-------------------------------   57 (367)
Q Consensus        16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------R-------------------------------   57 (367)
                      .|+.-+=..++.+..+||. .+...||..|. +++...++.       |                               
T Consensus       826 ~w~~~~f~~f~~~~~~~gr-~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGR-NDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCH-hHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888888889999999997 68999999997 677655543       1                               


Q ss_pred             ----------hccc-c-cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhh------------CCCCCHHHHHHHHHHH
Q 017727           58 ----------WLNY-L-RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQ------------LPGRTDNDIKNYWNTR  112 (367)
Q Consensus        58 ----------W~n~-L-~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~------------LPGRT~~qcKnRW~~~  112 (367)
                                |... + -+..++..||+|||+.|+-.+.+|| .+|.+|-..            |..||+..|..|..++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                      1110 1 1233455699999999999999999 689999542            3579999999999988


Q ss_pred             hhhH
Q 017727          113 LKKK  116 (367)
Q Consensus       113 Lkkk  116 (367)
                      ++--
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8643

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.29  E-value=0.0048  Score=48.38  Aligned_cols=52  Identities=31%  Similarity=0.496  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----C--CCceeecccccCccCccccchhhcccccCC
Q 017727           14 KGPWSPEEDAKLKDYIEKYGT-----G--GNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~-----~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      +.++|.|||+.|+++|..+..     .  .=|..+++.-++.++-.+-|+||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976632     1  238888888766788888999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.17  E-value=0.0057  Score=55.85  Aligned_cols=51  Identities=24%  Similarity=0.568  Sum_probs=42.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC-----CceeecccccCccCccccchhhcccccC
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGG-----NWIALPQKIGLKRCGKSCRLRWLNYLRP   64 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~-----nW~~IA~~lg~~Rs~kQCR~RW~n~L~P   64 (367)
                      .+.-.||.|||.+|.+.|-+|=..|     .+..|++.|  +||+..|.-||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHHH
Confidence            3567899999999999999993212     477888888  59999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=94.93  E-value=0.0047  Score=48.99  Aligned_cols=48  Identities=23%  Similarity=0.641  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC---C-CC--Cceeecccc---cCccCccccchhhccc
Q 017727           14 KGPWSPEEDAKLKDYIEK------YG---T-GG--NWIALPQKI---GLKRCGKSCRLRWLNY   61 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~k------yG---~-~~--nW~~IA~~l---g~~Rs~kQCR~RW~n~   61 (367)
                      +-.||.+|...|+.++..      ++   . ..  -|..||..|   |..|++.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999887      21   1 11  499999987   4679999999999874

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.80  E-value=0.034  Score=55.95  Aligned_cols=48  Identities=19%  Similarity=0.404  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      --..|+..|+.+|++...-.| ++|..||.++..|+...||.+|..+.-
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            345799999999999999999 799999999999999999999987654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.42  E-value=0.023  Score=57.13  Aligned_cols=48  Identities=23%  Similarity=0.574  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      ---|+..|+.+|++.....|- +||..||..+| .|....|+++|.+++.
T Consensus        63 ~e~WgadEEllli~~~~TlGl-GNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGL-GNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCC-CcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            346999999999999999999 89999999999 9999999999998765

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.17  E-value=0.17  Score=44.02  Aligned_cols=51  Identities=29%  Similarity=0.472  Sum_probs=41.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhC------------CCCCHHHHHHHHHHHhhh
Q 017727           65 NIKHGGFSEEEDNIICSLYISIGS----RWSIIAAQL------------PGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G~----kWskIAk~L------------PGRT~~qcKnRW~~~Lkk  115 (367)
                      ..++..||++||..|+-++.+||-    .|..|-..+            ..||+..|..|..++++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556789999999999999999996    799887643            469999999999998864

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.13  E-value=0.023  Score=52.43  Aligned_cols=50  Identities=22%  Similarity=0.545  Sum_probs=39.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCC-----CceeecccccCccCccccchhhccccc
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGG-----NWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~-----nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      .+...||.|||.+|.+.|-.|+..+     -...++..|  +|++..|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            4678899999999999999997633     244555555  6999999999977665

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=92.14  E-value=0.041  Score=43.08  Aligned_cols=50  Identities=26%  Similarity=0.430  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHh-----CC----------CCCceeeccccc----CccCccccchhhcccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKY-----GT----------GGNWIALPQKIG----LKRCGKSCRLRWLNYL   62 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~ky-----G~----------~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L   62 (367)
                      ++..||++|.+.|+++|.+|     |.          ..-|..|+..+.    ..|+..+|+.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999988     31          125999998772    3699999999998754

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=92.02  E-value=0.45  Score=50.00  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      -...||.||-.++-+++..||..+.+|-+.||.|+-..+..+|+...+.+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999998776654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.85  E-value=0.51  Score=37.83  Aligned_cols=47  Identities=30%  Similarity=0.547  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhC---CC--CCHHHHHHHHHHHhhhH
Q 017727           70 GFSEEEDNIICSLYISI---GS----------RWSIIAAQL---PG--RTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~---G~----------kWskIAk~L---PG--RT~~qcKnRW~~~Lkkk  116 (367)
                      .||+++++.|++++.+.   |+          .|..|++.|   +|  .|..||++||..+.+.-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998553   22          399999887   33  57899999998766543

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.03  E-value=0.15  Score=52.46  Aligned_cols=82  Identities=21%  Similarity=0.329  Sum_probs=62.4

Q ss_pred             CceeecccccCccCccccchhhcccccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 017727           37 NWIALPQKIGLKRCGKSCRLRWLNYLRPN-------------------------IKHGGFSEEEDNIICSLYISIGSRWS   91 (367)
Q Consensus        37 nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~-------------------------ikkg~WT~EED~~LleLv~~~G~kWs   91 (367)
                      .|.-++=... .|...-...||....++.                         +....||.+|-.-|..|++.|.-+|.
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            5776664444 666666666776652221                         12356999999999999999999999


Q ss_pred             HHHhh-----CCC-CCHHHHHHHHHHHhhhHhhh
Q 017727           92 IIAAQ-----LPG-RTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        92 kIAk~-----LPG-RT~~qcKnRW~~~Lkkkl~~  119 (367)
                      .||..     ++. ||-.++|.||+...++-++.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            99976     666 99999999999988876654

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.96  E-value=0.57  Score=46.60  Aligned_cols=51  Identities=22%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCCHHHHHhhC----CCCCHHHHHHHHHHHhhhHhh
Q 017727           68 HGGFSEEEDNIICSLYISI----------GSRWSIIAAQL----PGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~----------G~kWskIAk~L----PGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      ...|+.+|-..||++....          +.-|..||+.+    .-||+.+||++|.++.++-.+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999997653          23499999965    349999999999998776443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.78  E-value=0.9  Score=46.97  Aligned_cols=47  Identities=21%  Similarity=0.266  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      .+||.+|-++..++...+|..++.|+..+|.|...|||-+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999765443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=85.08  E-value=2.7  Score=30.34  Aligned_cols=41  Identities=24%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           73 EEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        73 ~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888889999999999999999 9999999998766554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-20
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		4e-20
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-19
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-19
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-15
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		7e-14
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		3e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		6e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGPW+ EED K+ + ++KYGT   W  + + +   R GK CR RW N+L P +K   ++E
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTK-QWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED II   +  +G+RW+ IA  LPGRTDN +KN+WN+
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGPW+ EED ++ ++++KYG    W  + + +   R GK CR RW N+L P +K   ++E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPK-RWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED II   +  +G+RW+ IA  LPGRTDN +KN+WN+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P +K   ++E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED II   +  +G+RW+ IA  LPGRTDN IKN+WN+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P +K   ++E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED II   +  +G+RW+ IA  LPGRTDN IKN+WN+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P +K   ++E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED II   +  +G+RW+ IA  LPGRTDN IKN+WN+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGP++  ED  +++Y+++ G   NW  +   +   R  K CR RW N+L P +    ++ 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           EED  I   Y+ +GS+WS+IA  +PGRTDN IKN WN+
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 13  KKGPWSPEEDAKLKDYIEKYGTGGNWIA--LPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70
           KK  ++PEED  LK  + ++G+    IA   P      R  + CR RW NYL P+I H  
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPN-----RNARQCRDRWKNYLAPSISHTP 64
Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           ++ EED ++       G +W+IIA   PGRTD  IKN W T
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           K  ++ EED KL+  + +YG   +WI + Q + + R  + CR RW NY+ P ++   +S 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYG-AKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSP 58
Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYW 109
           EED ++   Y   G +W+ I+  L  R+DN+I+N W
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 66  IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           +K   ++EEED II   +  +G+RW+ IA  LPGRTDN IKN+WN+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 66  IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT 111
           +K   ++EEED I+   +  +G+RW+ IA  LPGRTDN IKN+WN+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          KGPW+ EED +L   ++KYG    W  + + +   R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          KGPW+ EED ++ + ++KYG    W  + + +   R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-59
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-59
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-59
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-52
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-51
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-25
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-25
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-20
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-16
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	8e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	7e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	9e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-05
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  187 bits (477), Expect = 2e-59
 Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 2/109 (1%)

Query: 9   KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH 68
              + KGPW+ EED ++ ++++KYG    W  + + +   R GK CR RW N+L P +K 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPK-RWSDIAKHLKG-RIGKQCRERWHNHLNPEVKK 79

Query: 69  GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
             ++EEED II   +  +G+RW+ IA  LPGRTDN +KN+WN+ +++K+
Sbjct: 80  TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  185 bits (473), Expect = 3e-59
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 12  VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGF 71
           + KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P +K   +
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 72  SEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
           +EEED II   +  +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  185 bits (473), Expect = 6e-59
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 8   DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIK 67
           +    KK  ++PEED  LK  + ++G+    IA        R  + CR RW NYL P+I 
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIA---ATFPNRNARQCRDRWKNYLAPSIS 61

Query: 68  HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQ 123
           H  ++ EED ++       G +W+IIA   PGRTD  IKN W T   K  + + +Q
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQ 117

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  182 bits (465), Expect = 1e-57
 Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           KGP++  ED  +++Y+++ G   NW  +   +   R  K CR RW N+L P +    ++ 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQ-NWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTP 59

Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNIN 128
           EED  I   Y+ +GS+WS+IA  +PGRTDN IKN WN+ + K++         + 
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  170 bits (432), Expect = 2e-52
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 11  NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70
            + KGPW+ EED ++   ++KYG    W  + + +   R GK CR RW N+L P +K   
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 112

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
           ++EEED II   +  +G+RW+ IA  LPGRTDN IKN+WN+ +++K+
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  165 bits (421), Expect = 2e-51
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 14  KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
           K  ++ EED KL+  + +YG   +WI + Q +   R  + CR RW NY+ P ++   +S 
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAK-DWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSP 58

Query: 74  EEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQS 124
           EED ++   Y   G +W+ I+  L  R+DN+I+N W    + +   + ++S
Sbjct: 59  EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA--KHQKS 107

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 96.2 bits (240), Expect = 3e-25
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG 70
          + K G W   ED  LK  + KYG    W  +   +  ++  K C+ RW  +L P+IK   
Sbjct: 6  SGKGGVWRNTEDEILKAAVMKYGKN-QWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 71 FSEEE 75
          +S   
Sbjct: 64 WSGPS 68

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 95.3 bits (238), Expect = 4e-25
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          + KGPW+ EED +L   ++KYG    W  + + +   R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.8 bits (203), Expect = 4e-20
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          + K  W+ EED KLK  +E+ GT  +W  +   +   R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          +  K  W+ EED +L+  + ++G   +W  L       R  + C+ RWL  L  
Sbjct: 5  SSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLR 63
          K+  W  EED  L+  + KYG  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 8  DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIK 67
            ++ KK  WS EE+ KL    +   T   W  +   IG  R    C   +   L    +
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQ 58

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 64  PNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
            + K   +S EE+  +  L   + ++W  I A + GRT      ++   L K  
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAA 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLN-YLRPNI 66
              W+ +E+  L + +   G  GNW  +  ++   +  + C   ++  +  P+ 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPSS 59

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLRPNI 66
          K+  W  EED  L+  + KYG  GNW  +        R     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHG 69
            G ++PEE  KLK+   K+  G +W  +   +G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKH--GNDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 51/410 (12%), Positives = 109/410 (26%), Gaps = 153/410 (37%)

Query: 8   DKANVKKGPWSPEEDAKLK---------DYIEKYGTGGNWIALPQKIGLKRCGKSCRLRW 58
            K NV       +   KL+           +   G  G              GK+    W
Sbjct: 127 AKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVLG-------------SGKT----W 165

Query: 59  L--NYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWN--TRLK 114
           +  +              +  I    ++++ +             +  ++       ++ 
Sbjct: 166 VALDVCLSYKVQCKM---DFKI---FWLNLKNC---------NSPETVLEMLQKLLYQID 210

Query: 115 KKLLGRRKQSNNINGLISTSGQDVNGVNNGGDENNNSQYSQSLSNSAIERLQLHMQLQSL 174
                R   S+NI                           +   +S    L+  ++ +  
Sbjct: 211 PNWTSRSDHSSNI---------------------------KLRIHSIQAELRRLLKSKPY 243

Query: 175 QNPLSFYNNPSFWPKLHPVQEKMIQNLQSLNQSCQ------NPNLQNVLPSS-------- 220
           +N L    N         VQ        + N SC+         + + L ++        
Sbjct: 244 ENCLLVLLN---------VQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 221 --QLGLHEQNVGNFFEQS-NSPPSAPQDFPQSTC---PVPVSSTDNNVMNSNAMLK--AN 272
              + L    V +   +  +     PQD P+      P  +S            ++    
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSII-------AESIRDGLA 342

Query: 273 GFEPYNAANQEVSTFQAEIENFLNNNKAVGFTAQEENQIAQFDCFNAL----NGSNKE-- 326
            ++ +   N +       IE+ LN          E  +  +   F+ L      ++    
Sbjct: 343 TWDNWKHVNCD--KLTTIIESSLNV--------LEPAEYRK--MFDRLSVFPPSAHIPTI 390

Query: 327 --SLIWW----------ANEFDSKS-ASSNSWDSTPAIHQSEGMFQDYEL 363
             SLIW+           N+    S       +ST +I     ++ + ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKV 437

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIA---LPQKIGLKRCGKSCRLRWLNYLR 63
           + P+S  E   L   +EK GT G W        +    R     + +W   + 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 42.7 bits (100), Expect = 9e-06
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQK---IGLKRCGKSCRLRWLNYLR 63
          P+S  E   L + +E  GT G W  +  +       R     + +W   + 
Sbjct: 2  PFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61
          W  +E+  L D  E  G  GNW  +   +G  R  + CR  +L  
Sbjct: 12 WGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKT 55

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIA---LPQKIGLKRCGKSCRLRWLNYLRP 64
           + P++  E   L + +E  GT G W        +    R     + +W   +  
Sbjct: 30 IRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIA---LPQKIGLKRCGKSCRLRWLNYLR 63
           + P+S  E   L + +E  GT G W             R     + +W   + 
Sbjct: 16 IRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 8  DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61
           K       W+ +E   L + +E Y    +W  + + +G  R    C L +L  
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMY--KDDWNKVSEHVG-SRTQDECILHFLRL 62

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 55  RLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114
                +  R N+   G++EEE        +  G  WS IA  +  +T +  KN++    K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF-NYK 61

Query: 115 KKL 117
           K+ 
Sbjct: 62  KRQ 64

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGL---KRCGKSCRLRWLNYLRPNIKHG 69
           K  ++ EED  + D + K  T      L  +I        G S R R+  YL   +++ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66

Query: 70 GFSEEEDNII 79
             ++   ++
Sbjct: 67 YEVDKFGKLV 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.72
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.71
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.65
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.59
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.47
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.19
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.44
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.38
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.37
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.36
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.33
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.33
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.33
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.28
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.26
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.86
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.21
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.21
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.21
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.18
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.16
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.97
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.93
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.82
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.8
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.65
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.58
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.58
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.53
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.38
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.36
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.33
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.19
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.07
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.06
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.03
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.98
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.9
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.9
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.84
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.99
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.61
2crg_A	70	Metastasis associated protein MTA3; transcription	97.57
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.54
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.27
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.22
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.08
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.0
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.73
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.55
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.35
2crg_A	70	Metastasis associated protein MTA3; transcription	96.24
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.18
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.11
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.85
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.09
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.74
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.21
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.12
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	84.79
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.54

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=7.3e-34  Score=233.98  Aligned_cols=105  Identities=44%  Similarity=0.895  Sum_probs=99.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRW   90 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kW   90 (367)
                      ++++|+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W   78 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW   78 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence            478999999999999999999998 68999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           91 SIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        91 skIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      +.||++|||||+++|++||+.++++++
T Consensus        79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           79 AEIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999998864

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.7e-33  Score=232.36  Aligned_cols=103  Identities=33%  Similarity=0.678  Sum_probs=99.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII   93 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskI   93 (367)
                      ||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.|
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I   78 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI   78 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence            689999999999999999998 69999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727           94 AAQLPGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        94 Ak~LPGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      |++|||||+++|++||+.++++..+
T Consensus        79 a~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           79 SKFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHCCCCCHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999888654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.98  E-value=6e-33  Score=236.42  Aligned_cols=109  Identities=41%  Similarity=0.858  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHh
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI   86 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~   86 (367)
                      ..+|++++|+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+|
T Consensus        20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~   97 (128)
T 1h8a_C           20 VLNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL   97 (128)
T ss_dssp             --CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred             hhCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999998 68999999998 999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           87 GSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        87 G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      |++|+.||++|||||+++|++||+.++++++
T Consensus        98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999998764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=1e-32  Score=235.26  Aligned_cols=106  Identities=38%  Similarity=0.693  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG   87 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G   87 (367)
                      .++..+||+||+|||++|+++|.+||.  +|..||..|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            467899999999999999999999998  9999999998 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      .+|+.||++|||||+++||+||+.++++.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988763

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=9e-33  Score=236.69  Aligned_cols=104  Identities=39%  Similarity=0.833  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSII   93 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskI   93 (367)
                      ||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            799999999999999999997 69999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           94 AAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        94 Ak~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      |++|||||+++|++||+++|++++..
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~  105 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRIST  105 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=8.3e-31  Score=230.38  Aligned_cols=108  Identities=43%  Similarity=0.861  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIG   87 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G   87 (367)
                      ..|.+++|+||+|||++|+++|.+||. .+|..||..|+ +|+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            568999999999999999999999997 58999999998 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           88 SRWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        88 ~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      ++|+.||++|||||+++|++||+.++++++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=7.3e-30  Score=224.36  Aligned_cols=104  Identities=33%  Similarity=0.708  Sum_probs=61.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-C
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-R   89 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-k   89 (367)
                      ++++++||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~   80 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR   80 (159)
T ss_dssp             ------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc
Confidence            478999999999999999999998 69999999998 99999999999999999999999999999999999999996 7


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           90 WSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        90 WskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      |..||++|||||+.||++||+++|.+.
T Consensus        81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           81 WSVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            999999999999999999999987653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.6e-21  Score=150.69  Aligned_cols=67  Identities=30%  Similarity=0.661  Sum_probs=64.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHH
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEED   76 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED   76 (367)
                      ..+.+++|+||+|||++|+++|.+||. .+|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            457899999999999999999999997 69999999999 99999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.82  E-value=6.4e-21  Score=162.15  Aligned_cols=75  Identities=29%  Similarity=0.624  Sum_probs=51.2

Q ss_pred             ecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           41 LPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        41 IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      ||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|.+.
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            788888 99999999999999999999999999999999999999996 7999999999999999999999987653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.72  E-value=4e-18  Score=160.39  Aligned_cols=107  Identities=20%  Similarity=0.265  Sum_probs=92.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CceeecccccCccCccccchhhcccccCCCC-----------------
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTGG----NWIALPQKIGLKRCGKSCRLRWLNYLRPNIK-----------------   67 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~----nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik-----------------   67 (367)
                      .+.++|++||+|||++|+++|++||...    .|..||+.|+ +|++.|||.||+++|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4578899999999999999999998721    2999999999 99999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 017727           68 ------------HGGFSEEEDNIICSLYIS-I--------------------------------GS--------------   88 (367)
Q Consensus        68 ------------kg~WT~EED~~LleLv~~-~--------------------------------G~--------------   88 (367)
                                  +..||.+||-.|+..+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999998876 2                                11              


Q ss_pred             -----------CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           89 -----------RWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        89 -----------kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                                 .|..||+.+|+||.+++|+||+..|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999988765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.71  E-value=6.1e-18  Score=133.22  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=47.3

Q ss_pred             cchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727           54 CRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRL  113 (367)
Q Consensus        54 CR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~L  113 (367)
                      .--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 999999999998643

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=4.6e-17  Score=124.28  Aligned_cols=58  Identities=22%  Similarity=0.261  Sum_probs=55.9

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        61 ~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      +|+|.+++++||+|||++|+++++.||.+|.+||+ |+|||+.|||+||+.+|++.+.+
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            79999999999999999999999999999999999 88999999999999999998764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.65  E-value=2.8e-17  Score=140.80  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhccccc-----CCCCCC-CCCHHHHHH
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYLR-----PNIKHG-GFSEEEDNI   78 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L~-----P~ikkg-~WT~EED~~   78 (367)
                      .++..++++||+|||+.|+++|++||. ++|..|+..+.   .+|++.+|++||+++|+     |.++++ +|+++|+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            457889999999999999999999998 79999999852   38999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCCHHH
Q 017727           79 ICSLYISIGSRWSI   92 (367)
Q Consensus        79 LleLv~~~G~kWsk   92 (367)
                      |++++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1e-16  Score=120.03  Aligned_cols=56  Identities=23%  Similarity=0.414  Sum_probs=52.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      +|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999 6999999999999999999999999988654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=2.4e-16  Score=122.44  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=55.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           62 LRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        62 L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.+++++++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999987654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=4.7e-17  Score=121.94  Aligned_cols=57  Identities=26%  Similarity=0.625  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCC
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIK   67 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ik   67 (367)
                      .|.+++++||+|||++|+++|.+||. .+|..||..|+ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            47899999999999999999999997 59999999998 99999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=7.1e-17  Score=117.73  Aligned_cols=52  Identities=42%  Similarity=0.944  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      ++||+||+|||++|+++|.+||. .+|..||..|+ +|+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            58999999999999999999998 68999999998 999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=1.4e-16  Score=136.62  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=73.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhcccc-----cCCCCCCCCCHHH-HHHH
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEE-DNII   79 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L-----~P~ikkg~WT~EE-D~~L   79 (367)
                      +...++++||+|||+.|+++|++||. ++|..|++.+.   .+|++.+|++||++++     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999998 79999998741   3899999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCC
Q 017727           80 CSLYISIGSR   89 (367)
Q Consensus        80 leLv~~~G~k   89 (367)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=6.8e-16  Score=112.36  Aligned_cols=50  Identities=30%  Similarity=0.556  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      +++++||+|||++|+++|.+||. +|..||++|||||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999998 999999999999999999999999875

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=1.2e-16  Score=116.42  Aligned_cols=52  Identities=35%  Similarity=0.752  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      +++++||+|||++|+++|.+||. ++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            57999999999999999999998 69999999998 999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=2e-16  Score=121.89  Aligned_cols=64  Identities=23%  Similarity=0.434  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccC-ccCccccchhhcccccCCCCCCCCC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGL-KRCGKSCRLRWLNYLRPNIKHGGFS   72 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~P~ikkg~WT   72 (367)
                      .++..++++||+|||++|+++|++||. ++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            357789999999999999999999997 699999999975 8999999999999999999988764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=9.3e-16  Score=118.26  Aligned_cols=57  Identities=25%  Similarity=0.411  Sum_probs=53.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      .|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.+.+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4788999999999999999999999 79999999999999999999999999987753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=1.3e-15  Score=111.07  Aligned_cols=50  Identities=32%  Similarity=0.672  Sum_probs=47.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           66 IKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999998865

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=1.8e-15  Score=116.47  Aligned_cols=59  Identities=29%  Similarity=0.311  Sum_probs=54.4

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHhhh
Q 017727           61 YLRPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        61 ~L~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      ...+..++++||+|||++|+++|.+|| ++|+.||+.|+  |||+.|||+||+++|++.+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            356778999999999999999999999 69999999999  999999999999999997754

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=2.4e-15  Score=110.22  Aligned_cols=50  Identities=32%  Similarity=0.370  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhH
Q 017727           67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkk  116 (367)
                      ++++||+|||++|+++|.+|| ++|+.||+.|+  |||+.||++||.++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            579999999999999999999 69999999999  999999999999998753

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=3.2e-15  Score=112.41  Aligned_cols=53  Identities=11%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++|||||+.|||+||.++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 7999999999999999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=1.1e-14  Score=111.58  Aligned_cols=52  Identities=25%  Similarity=0.415  Sum_probs=47.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhHh
Q 017727           66 IKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP--GRT~~qcKnRW~~~Lkkkl  117 (367)
                      .++++||+|||++|+++|.+|| ++|+.||+.+|  |||+.|||+||+++++..|
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            5789999999999999999999 59999999976  9999999999999998754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=1.6e-15  Score=116.21  Aligned_cols=56  Identities=30%  Similarity=0.568  Sum_probs=49.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc-CccCccccchhhcccccCCCC
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGKSCRLRWLNYLRPNIK   67 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg-~~Rs~kQCR~RW~n~L~P~ik   67 (367)
                      ..+|++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||+++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            357899999999999999999998 69999999864 389999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=6.2e-15  Score=114.90  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhHhhh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIG------SRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G------~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      +|.+++++||+|||++|+++|.+||      ++|.+||++|+|||+.||++||+++|++.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999      79999999999999999999999999886643

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=2.4e-15  Score=113.07  Aligned_cols=55  Identities=16%  Similarity=0.513  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      .+.+++++||+|||++|+++|++||. .+|..||+.|+ +|+++||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            36899999999999999999999997 59999999999 999999999999999764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-15  Score=116.67  Aligned_cols=60  Identities=23%  Similarity=0.344  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCC
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG   70 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~   70 (367)
                      ...|.+++++||+|||++|+++|+.||.  +|..||+ ++ +|+++||+.||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            3578999999999999999999999998  9999999 76 79999999999999999877653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.49  E-value=3.5e-14  Score=106.29  Aligned_cols=50  Identities=14%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 017727           64 PNIKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP-GRTDNDIKNYWNTRL  113 (367)
Q Consensus        64 P~ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LP-GRT~~qcKnRW~~~L  113 (367)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999 89999999999 999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.6e-15  Score=116.27  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCceeecccccCccCccccchhhcccccCCCCCCC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTG----GNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGG   70 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~----~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~   70 (367)
                      .+|.+++++||+|||++|+++|.+||..    .+|..||+.|+ +|+++||+.||.++|.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            3789999999999999999999999941    38999999999 99999999999999999887764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.47  E-value=9.2e-15  Score=107.13  Aligned_cols=50  Identities=30%  Similarity=0.587  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccC-ccCccccchhhccccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGL-KRCGKSCRLRWLNYLR   63 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~-~Rs~kQCR~RW~n~L~   63 (367)
                      ++++||+|||++|+++|++||. ++|..||..++. +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            6899999999999999999997 699999999975 6999999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.19  E-value=4.7e-15  Score=120.05  Aligned_cols=57  Identities=26%  Similarity=0.342  Sum_probs=53.6

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           61 YLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        61 ~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      .+.|.+++++||+|||++|+++|..||.+|..||++|||||++||++||++++++.-
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            467899999999999999999999999999999999999999999999999988753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=1.5e-14  Score=108.28  Aligned_cols=52  Identities=27%  Similarity=0.534  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccc
Q 017727           10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYL   62 (367)
Q Consensus        10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L   62 (367)
                      ..+.+++||+|||++|+++|++||. ++|..||+.|+.+|+++|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999997 699999999987899999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.44  E-value=1.6e-14  Score=112.13  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCC
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH   68 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikk   68 (367)
                      ..|.+++++||+|||++|+++|.+||.  +|..||..|+ +|++.||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999998  9999999999 999999999999999887666

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.38  E-value=2e-13  Score=114.34  Aligned_cols=83  Identities=19%  Similarity=0.164  Sum_probs=68.7

Q ss_pred             CccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---CccCccccchhhcccc-----cCCCCCCCCCHHH
Q 017727            4 APCCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG---LKRCGKSCRLRWLNYL-----RPNIKHGGFSEEE   75 (367)
Q Consensus         4 ~pc~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L-----~P~ikkg~WT~EE   75 (367)
                      ...-.+...++++||+|||+.|+++|++||. ++|..|++.+.   .+||+.+|++||++++     +|.+++|.-+++|
T Consensus         3 ~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~   81 (105)
T 2aje_A            3 HMLEDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQE   81 (105)
T ss_dssp             ------CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCH
T ss_pred             CCccccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHH
Confidence            3445668899999999999999999999998 79999999762   3899999999999998     6999999988888


Q ss_pred             HHH-HHHHHHHhC
Q 017727           76 DNI-ICSLYISIG   87 (367)
Q Consensus        76 D~~-LleLv~~~G   87 (367)
                      -.. +++|+..+|
T Consensus        82 ~l~rv~~~~~~~~   94 (105)
T 2aje_A           82 LLNRVLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            765 888877665

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=4.9e-13  Score=105.15  Aligned_cols=52  Identities=10%  Similarity=0.220  Sum_probs=47.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           64 PNIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        64 P~ikkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      +.+.+++||.+||++|++++..||    .+|.+||++|||||+.||++||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            467889999999999999999999    6899999999999999999999987653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.37  E-value=5.7e-13  Score=113.18  Aligned_cols=55  Identities=27%  Similarity=0.532  Sum_probs=50.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      .+..++|+||+|||++|+++|.+||.+|..||+.|||||+.||+.||.++|.+.+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~   60 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI   60 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence            4578899999999999999999999999999999999999999999999987654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.36  E-value=5.4e-13  Score=109.34  Aligned_cols=51  Identities=31%  Similarity=0.666  Sum_probs=47.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           65 NIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      ++++|+||+|||++|+++|.+||. +|..||+.|||||+.||+.||.++|.+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   52 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   52 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence            368999999999999999999997 799999999999999999999998754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.33  E-value=3.4e-13  Score=106.10  Aligned_cols=58  Identities=22%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCC
Q 017727            6 CCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH   68 (367)
Q Consensus         6 c~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikk   68 (367)
                      -...|.+++|+||+|||++|+++|++||.  +|..||+.|  +|++.||+.||.. |....+.
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            35679999999999999999999999998  699999999  7999999999985 5444443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.33  E-value=3.3e-13  Score=115.21  Aligned_cols=84  Identities=21%  Similarity=0.299  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHh
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISI   86 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~   86 (367)
                      ...|.+++|+||+|||++|+++|.+||.  +|..||..|+ +|++.+|+.||.++|++.+..++|+.+-    +......
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k  119 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK  119 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence            3568999999999999999999999997  8999999998 9999999999999999999999988653    1111223


Q ss_pred             CCCHHHHHhhC
Q 017727           87 GSRWSIIAAQL   97 (367)
Q Consensus        87 G~kWskIAk~L   97 (367)
                      +.+|+.|++.|
T Consensus       120 k~~~~~i~k~~  130 (131)
T 3zqc_A          120 KRKAADVPKKL  130 (131)
T ss_dssp             -----------
T ss_pred             hhhhhhcchhc
Confidence            45688887765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.33  E-value=7.8e-13  Score=106.36  Aligned_cols=69  Identities=19%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeeccc----ccCccCccccchhhcccc-----cCCCCCC-CCCHHHHHHHHHHHH
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQK----IGLKRCGKSCRLRWLNYL-----RPNIKHG-GFSEEEDNIICSLYI   84 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~----lg~~Rs~kQCR~RW~n~L-----~P~ikkg-~WT~EED~~LleLv~   84 (367)
                      ++||+|||+.|+++|++||. ++|..|++.    ++ +||+.+|++||++++     +|.+++| +..++...+++.|++
T Consensus         1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998 799999985    66 999999999999988     6776665 677777788988876


Q ss_pred             H
Q 017727           85 S   85 (367)
Q Consensus        85 ~   85 (367)
                      .
T Consensus        79 ~   79 (83)
T 2ckx_A           79 Y   79 (83)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=103.81  Aligned_cols=48  Identities=10%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           65 NIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      ...+++||+|||++|++++.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.28  E-value=2.8e-12  Score=105.97  Aligned_cols=50  Identities=26%  Similarity=0.466  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhHh
Q 017727           68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      +|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i   51 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL   51 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc
Confidence            589999999999999999996 89999999999999999999999887643

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.26  E-value=1.7e-12  Score=103.26  Aligned_cols=53  Identities=23%  Similarity=0.516  Sum_probs=49.3

Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727            6 CCDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus         6 c~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      .+.+....+++||+|||++|+++|++||.  +|..||+.|+ +|++.||+.||.++
T Consensus        10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           10 AKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            45677788999999999999999999994  9999999999 89999999999998

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=9.5e-12  Score=100.01  Aligned_cols=49  Identities=24%  Similarity=0.393  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHh
Q 017727           69 GGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      .+||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999997 99999996    899999999999999998654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=3.6e-12  Score=120.06  Aligned_cols=55  Identities=27%  Similarity=0.474  Sum_probs=49.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727           64 PNIKHGGFSEEEDNIICSLYISIGSR------WSIIAAQLPGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        64 P~ikkg~WT~EED~~LleLv~~~G~k------WskIAk~LPGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      +.+++++||+|||++|+++|+++|++      |..||++|||||+++||+||+++|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            45788999999999999999999985      99999999999999999999999999876

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.86  E-value=1e-12  Score=106.34  Aligned_cols=55  Identities=24%  Similarity=0.489  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccC
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP   64 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P   64 (367)
                      ...|.+++|+||+|||++|+++|.+||.  +|..||..|+ +|++.||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            5568999999999999999999999998  8999999999 99999999999998863

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.21  E-value=1.3e-11  Score=105.62  Aligned_cols=55  Identities=24%  Similarity=0.363  Sum_probs=50.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 017727           62 LRPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        62 L~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            556778999999999999999999997 99999998    49999999999999999863

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.21  E-value=1.8e-11  Score=93.67  Aligned_cols=49  Identities=20%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRWSIIA---AQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kWskIA---k~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      ++.+||+|||+.|+++|++||.+|+.|+   ..+++||..++|+||+++.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   567999999999999998875

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.21  E-value=2e-11  Score=102.21  Aligned_cols=54  Identities=22%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhH
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQL----PGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~L----PGRT~~qcKnRW~~~Lkkk  116 (367)
                      .+..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            34568899999999999999999997 999999965    8999999999999999864

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.18  E-value=2.8e-11  Score=99.20  Aligned_cols=50  Identities=18%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           67 KHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      .+++||.|||++|++++..||    ++|.+||++|||||+++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999988664

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=6.7e-12  Score=98.70  Aligned_cols=56  Identities=16%  Similarity=0.443  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC--CCceeecccccCccCccccchhhccccc
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTG--GNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~--~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      -+++...+++||+|||.+|+.+|.+||..  .+|..||+.|+ +|+.+||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            46678889999999999999999999931  38999999999 9999999999998764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=7.5e-11  Score=101.12  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=48.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhH
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      ....++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            33457899999999999999999997 99999997    49999999999999999764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=8.8e-10  Score=83.16  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      ..++||+||++++++++..||.+|..||..||+||..+|+.+|....+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.8e-09  Score=88.72  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             cccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhHhhhh
Q 017727           52 KSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQL-----PGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        52 kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~L-----PGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      .=+.++|.++|.+    ++||.||+..|++|+++||-+|..|+..+     ++||..++|+||..+.++-+..+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4578999999976    89999999999999999999999999999     58999999999999998877655

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.82  E-value=5.9e-10  Score=91.35  Aligned_cols=49  Identities=14%  Similarity=0.410  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhcccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYL   62 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L   62 (367)
                      .+++||+|||.+|++++.+||.  ...|..||..|+ +|+.++|+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3678999999999999999984  147999999999 999999999998864

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.80  E-value=5.9e-09  Score=81.62  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=45.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           65 NIKHGGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      ..+.+.||.|||++|.+++++|+    .+|.+||++| |||..+|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    5899999998 99999999999988655

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.65  E-value=2.9e-08  Score=92.96  Aligned_cols=49  Identities=12%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      ..++||+||++++++++.+||++|..||+.|++||..|||++|++..++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999987765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2e-08  Score=75.68  Aligned_cols=52  Identities=13%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      .++.....++||+||++++.+++.+||.  +|..||..|+ +|+..+|+.+|...
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            4556667899999999999999999996  8999999999 99999999998654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.58  E-value=1.5e-08  Score=77.54  Aligned_cols=49  Identities=12%  Similarity=0.160  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeecc---cccCccCccccchhhccccc
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ---KIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~---~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      ..+.+||+|||+.|++.|++||.  +|..|+.   .+. +|+...+.+||++...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            47889999999999999999997  9999994   555 9999999999998654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.53  E-value=1.1e-07  Score=74.85  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      ....||.+|+++|.+++..|+.    +|.+||..|||||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            3468999999999999999984    799999999999999999999877443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.38  E-value=2.4e-07  Score=94.91  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           69 GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      ..||+||-+++++++.+||..|..||+.++.||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999976444

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.36  E-value=3.8e-07  Score=68.73  Aligned_cols=47  Identities=17%  Similarity=0.339  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CC-CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 017727           68 HGGFSEEEDNIICSLYISI--------GS-RWSIIAA-QLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~--------G~-kWskIAk-~LPGRT~~qcKnRW~~~Lk  114 (367)
                      +.+||+|||.+|++.|.++        |+ -|..+++ .+|++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        44 3999999 7999999999999988764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.33  E-value=8.7e-08  Score=74.99  Aligned_cols=52  Identities=13%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhccccc
Q 017727           10 ANVKKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        10 p~lKKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      ...+++.||.|||.+|.+++.+|+.  ...|.+||..+  +|+.++|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            3456789999999999999999974  24799999997  5999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.19  E-value=3.1e-07  Score=69.23  Aligned_cols=48  Identities=21%  Similarity=0.463  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCCceeecc-cccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKY--------GTGGNWIALPQ-KIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~ky--------G~~~nW~~IA~-~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      |.+||+|||+.|+++|.+|        |. .-|..+++ .++ .++-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        44 46999999 677 9999999999999875

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=8.9e-06  Score=61.67  Aligned_cols=49  Identities=12%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHHHHHH
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQ-LPGRTDNDIKNYWNT  111 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~-LPGRT~~qcKnRW~~  111 (367)
                      .|.++...||+||-++..+++.+||..|..|+++ ||+||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            4677888999999999999999999999999995 899999999988864

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.06  E-value=8.4e-07  Score=69.85  Aligned_cols=49  Identities=20%  Similarity=0.468  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      ...||.||+.+|.+++..|+.  ...|..||..+| +|+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            457999999999999999974  247999999999 8999999999988754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.03  E-value=1.6e-06  Score=81.24  Aligned_cols=51  Identities=25%  Similarity=0.446  Sum_probs=46.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727           10 ANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        10 p~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      .....++||.||++++++++.+||.  +|..||+.|+ +|+..||+.+|.++.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3356789999999999999999997  8999999999 9999999999988764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.98  E-value=9.1e-06  Score=66.52  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           69 GGFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~---kWskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      --||.|||+.||..+++-|.   .|+.||+.|.+|+.+||++||+.+++-.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            36999999999999999996   8999999999999999999999988753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.90  E-value=1.7e-06  Score=68.29  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 017727           68 HGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWN  110 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~  110 (367)
                      ...||.+|+++|..+++.|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    8999999999999999999874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.90  E-value=2.5e-05  Score=75.94  Aligned_cols=99  Identities=17%  Similarity=0.255  Sum_probs=78.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------hhcc---------------------------
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------RWLN---------------------------   60 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------RW~n---------------------------   60 (367)
                      +.||..+...++.++.+||. .+|..||..|+ +++...++.       ||..                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999998 79999999998 888766533       2200                           


Q ss_pred             ----------------cccCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHH
Q 017727           61 ----------------YLRPNIKHGGFSEEEDNIICSLYISIGS----RWSIIAA------------QLPGRTDNDIKNY  108 (367)
Q Consensus        61 ----------------~L~P~ikkg~WT~EED~~LleLv~~~G~----kWskIAk------------~LPGRT~~qcKnR  108 (367)
                                      +.-+..+...||++||+.|+-++.+||-    .|..|..            .+..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                            0012234568999999999999999994    6999973            4467999999999


Q ss_pred             HHHHhhh
Q 017727          109 WNTRLKK  115 (367)
Q Consensus       109 W~~~Lkk  115 (367)
                      .+++++-
T Consensus       269 c~tLi~~  275 (304)
T 1ofc_X          269 CNTLITL  275 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.84  E-value=3.7e-05  Score=63.08  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             hhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhHhhhhh
Q 017727           56 LRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLP-----GRTDNDIKNYWNTRLKKKLLGRR  121 (367)
Q Consensus        56 ~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~kWskIAk~LP-----GRT~~qcKnRW~~~Lkkkl~~rr  121 (367)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++-+..+.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            44556664    3689999999999999999999999999873     79999999999999988776543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=65.86  Aligned_cols=45  Identities=18%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           70 GFSEEEDNIICSLYISIGS---RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G~---kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      -||.|||+.|+..+++-|.   .|+.||+.| +||++||++||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999997   899999999 99999999999988764

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.61  E-value=8.9e-05  Score=60.46  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHH
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNT  111 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~  111 (367)
                      ...||+||.++..+++..||.+|..||..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998864

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.57  E-value=0.00016  Score=55.98  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAA-QLPGRTDNDIKNYWNT  111 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk-~LPGRT~~qcKnRW~~  111 (367)
                      ...||+||-++..+++..||..|..|++ .||+||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5999999999999873

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.54  E-value=1.4e-05  Score=63.11  Aligned_cols=45  Identities=13%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWL   59 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~   59 (367)
                      .+.||.||+.+|..++.+|+.  ...|.+||..+| +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            457999999999999999965  347999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=55.04  Aligned_cols=50  Identities=10%  Similarity=0.222  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccCccCccccchhhcc
Q 017727            8 DKANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ-KIGLKRCGKSCRLRWLN   60 (367)
Q Consensus         8 ~Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~-~lg~~Rs~kQCR~RW~n   60 (367)
                      -.|.++...||+||-.+..+++.+||.  +|..|++ .++ +|+..+|..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            357788899999999999999999998  8999998 588 9999999887643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.22  E-value=9e-05  Score=60.78  Aligned_cols=50  Identities=14%  Similarity=0.365  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----CccCccccchhhccccc
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG----LKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L~   63 (367)
                      ++..+||.||+..|++|+++||.  .|..|+..+.    .+|+...++.||..+.+
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            34489999999999999999998  8999999993    37999999999987543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.08  E-value=0.00054  Score=54.08  Aligned_cols=49  Identities=14%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHHhhhH
Q 017727           68 HGGFSEEEDNIICSLYISIGS----------RWSIIAAQLP----GRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~----------kWskIAk~LP----GRT~~qcKnRW~~~Lkkk  116 (367)
                      ...||.+|-..||++...+..          .|..||..|.    .||+.||+++|.++.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999976321          5999999873    699999999999987763

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.00  E-value=0.00024  Score=72.90  Aligned_cols=48  Identities=25%  Similarity=0.462  Sum_probs=43.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      .....+||.||-+++++++.+||.  +|..||+.++ +|+..||+..|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345789999999999999999997  9999999999 99999999998764

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.73  E-value=0.0045  Score=61.73  Aligned_cols=100  Identities=23%  Similarity=0.339  Sum_probs=75.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccch-------hhcc---------------------------
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRL-------RWLN---------------------------   60 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~-------RW~n---------------------------   60 (367)
                      +.||.-+=..++.++.+||. .+-..||..|+.+++...++.       ||..                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999998 789999999953566544332       1100                           


Q ss_pred             -------c------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhh------------CCCCCHHHHH
Q 017727           61 -------Y------L----RPN-IKHGGFSEEEDNIICSLYISIG----SRWSIIAAQ------------LPGRTDNDIK  106 (367)
Q Consensus        61 -------~------L----~P~-ikkg~WT~EED~~LleLv~~~G----~kWskIAk~------------LPGRT~~qcK  106 (367)
                             +      |    .+. -+...||++||..||-++.+||    +.|.+|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                   0      1    111 1345799999999999999999    469999543            3569999999


Q ss_pred             HHHHHHhhh
Q 017727          107 NYWNTRLKK  115 (367)
Q Consensus       107 nRW~~~Lkk  115 (367)
                      .|...+++-
T Consensus       283 rRc~tLi~~  291 (374)
T 2y9y_A          283 RRGNTLLQC  291 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999975

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.55  E-value=0.0056  Score=55.03  Aligned_cols=45  Identities=16%  Similarity=0.308  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHh--hC------------CCCCHHHHHHHHHHHhh
Q 017727           70 GFSEEEDNIICSLYISIG-SRWSIIAA--QL------------PGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G-~kWskIAk--~L------------PGRT~~qcKnRW~~~Lk  114 (367)
                      .||.+||..|+..+.+|| ++|..|-.  .|            ..+++..+..|-..+|+
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            599999999999999999 89999975  21            12567789999876665

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.35  E-value=0.0011  Score=53.86  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWL   59 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~   59 (367)
                      ...||+||.++..+....||.  +|..|+..|+ +|+..+|.+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHh
Confidence            467999999999999999997  8999999998 999999988764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.24  E-value=0.0016  Score=50.21  Aligned_cols=45  Identities=20%  Similarity=0.289  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccCccCccccchhhcc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQ-KIGLKRCGKSCRLRWLN   60 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~-~lg~~Rs~kQCR~RW~n   60 (367)
                      ....||+||-.+..+++.+||.  +|..|++ .|+ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            4567999999999999999998  8999999 588 9999999887653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.18  E-value=0.00048  Score=54.38  Aligned_cols=50  Identities=20%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--------CCCceeeccccc---CccCccccchhhcccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGT--------GGNWIALPQKIG---LKRCGKSCRLRWLNYL   62 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~--------~~nW~~IA~~lg---~~Rs~kQCR~RW~n~L   62 (367)
                      +...||.+|...|+.+....-.        ..-|..||..|.   -.|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5678999999999999975311        125999999874   5799999999998754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.11  E-value=0.0019  Score=52.93  Aligned_cols=46  Identities=15%  Similarity=0.308  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CCCceeecccccCccCccccchhhcc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGT-GGNWIALPQKIGLKRCGKSCRLRWLN   60 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~-~~nW~~IA~~lg~~Rs~kQCR~RW~n   60 (367)
                      ---||.|||..|+...++-|. ...|..||+.|+ +|+..|+.+|++.
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            345999999999999999986 458999999998 9999999999965

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.85  E-value=0.0014  Score=51.03  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CCCceeecccccCccCccccchhhcccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGT-GGNWIALPQKIGLKRCGKSCRLRWLNYL   62 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~-~~nW~~IA~~lg~~Rs~kQCR~RW~n~L   62 (367)
                      --.||.|||..|+..+++-|. ...|..||..|  +|++.|+..|+...+
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm   61 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM   61 (70)
Confidence            346999999999999999887 34799999988  699999999998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.09  E-value=0.017  Score=47.26  Aligned_cols=49  Identities=14%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----CccCccccchhhcccc
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG----LKRCGKSCRLRWLNYL   62 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg----~~Rs~kQCR~RW~n~L   62 (367)
                      ++...||.||...|.+|+++|.-  .|..|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999997  8999999874    2688888999987754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.74  E-value=0.32  Score=37.20  Aligned_cols=47  Identities=11%  Similarity=-0.012  Sum_probs=40.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHH
Q 017727           66 IKHGGFSEEEDNIICSLYISIGSR---WSIIAAQL--PGRTDNDIKNYWNTR  112 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~k---WskIAk~L--PGRT~~qcKnRW~~~  112 (367)
                      ..+-.||+|..+..++++.++|..   +..|-+.|  +|.|..+|+.+...+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            356689999999999999999964   88999886  799999999987653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.21  E-value=0.19  Score=44.87  Aligned_cols=51  Identities=22%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhhH
Q 017727           66 IKHGGFSEEEDNIICSLYISIG---SRWSIIAAQ--LPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G---~kWskIAk~--LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      -....||+.|-..|+.++.+||   .+|..|+..  |.+||...|+..+..++..-
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            3557899999999999999999   589999965  78999999998887766543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.12  E-value=0.23  Score=48.24  Aligned_cols=48  Identities=15%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           68 HGGFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      .+.||..+....+.++.+||. .|..||..|+|+|...|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            457999999999999999996 899999999999999998877666643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=84.79  E-value=0.51  Score=36.05  Aligned_cols=50  Identities=10%  Similarity=0.075  Sum_probs=36.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC-CCceeeccccc-CccCccccchhhcc
Q 017727           11 NVKKGPWSPEEDAKLKDYIEKYGTG-GNWIALPQKIG-LKRCGKSCRLRWLN   60 (367)
Q Consensus        11 ~lKKG~WT~EEDekL~~lV~kyG~~-~nW~~IA~~lg-~~Rs~kQCR~RW~n   60 (367)
                      ...+-.||+|..++.+++|++.|.+ ..+..|.+.|+ .+.+..++.-|.+.
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            3467789999999999999999952 23677877776 24566666655443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.54  E-value=0.99  Score=43.07  Aligned_cols=29  Identities=38%  Similarity=0.723  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeeccc
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQK   44 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~   44 (367)
                      ..|+.+||..|+..|-+||. ++|..|-.-
T Consensus       169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT-TCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcC-CcHHHHhcC
Confidence            45999999999999999999 899998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-17
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-08
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-09
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-05
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-06
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	7e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	6e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-08
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (186), Expect = 3e-18
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          + KGPW+ EED +L   ++KYG    W  + + +   R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 66  IKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLK 114
           +  G +++EED  +  L    G  RWS+IA  L GR     +  W+  L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRP 64
          K  W+ EED KLK  +E+ GT  +W  +   +   R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 7e-08
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 69  GGFSEEEDNIICSLYISIGSR-WSIIAAQLPGRTDNDIKNYWNTRLK 114
             ++ EED  +  L    G+  W +IA  LP RTD   ++ W   L 
Sbjct: 2   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.4 bits (172), Expect = 5e-16
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK---RCGKSCRLRWLNYLRPNIKHGG 70
          K  ++ EED  + D + K  T      L  +I        G S R R+  YL   +++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 71 FSEEEDNII 79
            ++   ++
Sbjct: 61 EVDKFGKLV 69

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 69  GGFSEEEDNIICSLYISIGSR------WSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
             F++EED  I  +     +R      +  I+  +P  T N I++ +   L K+L
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLR 63
          K+  W  EED  L+  + KYG  GNW  +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 67  KHGGFSEEEDNIICSLYISIG-SRWSIIAAQLP--GRTDNDIKNYWNTRLK 114
           K   +  EED  + S     G   WS I        RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 7e-14
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLK-RCGKSCRLRWLNYLRPNI 66
          KK  W+ EE   +K  ++KYG  GNW A+ +      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYG-EGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 67  KHGGFSEEEDNIICSLYISIGS-RWSIIAAQ--LPGRTDNDIKNYWNTRLKKKL 117
           K   ++ EE   + +     G   W+ I+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 61.6 bits (149), Expect = 7e-13
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 16 PWSPEEDAKLKDYIEKYGTGGNWIALPQ---KIGLKRCGKSCRLRWLNYLR-----PNIK 67
          P+S  E   L + +E  G  G W  +          R     + +W   +      P  +
Sbjct: 2  PFSVAEVEALVEAVEHLG-TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 68 HGGFSEEEDNIICSLYISIGSRWS 91
           G    ++   +    ++  + WS
Sbjct: 61 RGEPVPQD---LLDRVLAAHAYWS 81

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 23/46 (50%), Positives = 33/46 (71%)

Query: 69  GGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK 114
             ++EEED II   +  +G+RW+ IA  LPGRTDN IKN+WN+ ++
Sbjct: 2   TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63
          K  W+ EED  +    ++ G     IA   K+   R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIA---KLLPGRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73
             W+ EE    +  + K+G     I+  + IG  R     +     Y +  +K G   E
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRRWTKIS--KLIG-SRTVLQVKSYARQYFKNKVKCGLDKE 58

Query: 74 EED 76
            +
Sbjct: 59 TPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
           ++ EE  +        G RW+ I+  +  RT   +K+Y     K K+
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 8  DKANVKKGPWSPEEDAKLKDYIEKYGTG--GNWIALPQKIGLKRCGKSCRLRW 58
          ++A   + PW+  +   L+  +++Y  G    W  + + +   +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 6e-07
 Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 63  RPNIKHGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYW 109
           R       +++ +  ++              W  IA  +P ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115
           +SE+E       ++     + +IA+ L  +T  +   Y+    K 
Sbjct: 20  WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63
              WS +E    ++   ++    N+  +   +  ++    C L +    +
Sbjct: 16 VMNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYLTKK 63

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 6/45 (13%), Positives = 19/45 (42%)

Query: 71  FSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKK 115
           ++ EE  +        G  +  I+  +  ++   +KN++    ++
Sbjct: 8   WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR 63
              W+ EE       I KYG     I+    IG  +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAIS--DVIG-NKSVVQVKNFFVNYRR 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 1e-09
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 17 WSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY 61
          W+ +E+  L + +   G  GNW  +  ++   +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 16 PWSPEEDAKLKDYIEKYGTGG-NWIALPQKIGLKRCGKSCRLRWLNYLRPNIKH 68
          PWS +E+   +  +  Y     +  A   +    R  +  +  +   L  +IK+
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 71  FSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTRLKK 115
           +S +E+                RW+ +A  + GRT  ++K ++   ++ 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 52

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 57  RWLNYLRPNIKHGGFSEEEDNIICSLYISIGSR---WSIIAAQLPGRTDNDIKNYWNTRL 113
                     K   ++ E D +I ++    G++   +S+I+ QL  +T  ++ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 114 K 114
           +
Sbjct: 82  Q 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.69
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.52
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.48
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.47
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.46
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.4
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.39
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.34
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.26
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.24
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.24
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.22
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.21
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.11
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.1
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.09
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.8
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.78
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.58
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.14
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.1
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.62
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.24
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.04
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.31
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.83
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.6
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.93
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	91.99
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	88.88
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	87.59

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=7.3e-20  Score=146.26  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC----CCceeecccccCccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHH
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTG----GNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYI   84 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~----~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~   84 (367)
                      |++||+|||++|+++|.+||..    .+|..||..|+ +|+++|||+||.++|+|.++++.||.+||++|+.++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            6899999999999999999972    14999999998 9999999999999999999999999999999876553

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.1e-18  Score=123.97  Aligned_cols=52  Identities=42%  Similarity=0.944  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      ++||+||+|||++|+++|++||. ++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            58999999999999999999997 68999999999 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.9e-17  Score=116.07  Aligned_cols=47  Identities=49%  Similarity=0.865  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-16  Score=116.44  Aligned_cols=50  Identities=32%  Similarity=0.670  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           66 IKHGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      +++|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 5899999999999999999999998875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.6e-17  Score=117.21  Aligned_cols=50  Identities=36%  Similarity=0.777  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCC
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPN   65 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   65 (367)
                      |++||+|||++|+++|.+||. ++|..||..|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            689999999999999999998 69999999998 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.9e-15  Score=108.58  Aligned_cols=48  Identities=31%  Similarity=0.560  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 017727           68 HGGFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTRLKK  115 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~Lkk  115 (367)
                      |++||+|||++|+++|.+|| ++|..||++|||||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5899999999999999999999999875

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.52  E-value=1.2e-15  Score=120.35  Aligned_cols=74  Identities=20%  Similarity=0.407  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeecccc---cCccCccccchhhccccc-----CCCCCCCCCHHHHHHHHHHHHHh
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKI---GLKRCGKSCRLRWLNYLR-----PNIKHGGFSEEEDNIICSLYISI   86 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~l---g~~Rs~kQCR~RW~n~L~-----P~ikkg~WT~EED~~LleLv~~~   86 (367)
                      .+||+|||++|+++|++||. ++|..|++.+   ..+|++.||++||+++|+     |..+++.|+++|   |+..|..+
T Consensus         1 r~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~   76 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHH
Confidence            37999999999999999998 7999999753   248999999999999984     678899999877   44444445


Q ss_pred             CCCHHH
Q 017727           87 GSRWSI   92 (367)
Q Consensus        87 G~kWsk   92 (367)
                      +.+|++
T Consensus        77 ~~~wsq   82 (83)
T d2ckxa1          77 HAYWSQ   82 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            556653

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-14  Score=104.28  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhh--CCCCCHHHHHHHHHHHhhhHh
Q 017727           67 KHGGFSEEEDNIICSLYISIG-SRWSIIAAQ--LPGRTDNDIKNYWNTRLKKKL  117 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G-~kWskIAk~--LPGRT~~qcKnRW~~~Lkkkl  117 (367)
                      ++.+||+|||++|+++|++|| ++|..||+.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            578999999999999999999 589999998  569999999999999988754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.1e-15  Score=108.39  Aligned_cols=54  Identities=31%  Similarity=0.606  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc-CccCccccchhhcccccCCCC
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGKSCRLRWLNYLRPNIK   67 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg-~~Rs~kQCR~RW~n~L~P~ik   67 (367)
                      ||++||+|||++|+++|++||. ++|..||+.++ .+|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~-~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-ChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998 69999998743 389999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.5e-14  Score=113.82  Aligned_cols=53  Identities=26%  Similarity=0.409  Sum_probs=49.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhHhhhh
Q 017727           68 HGGFSEEEDNIICSLYISIGSR------WSIIAAQLPGRTDNDIKNYWNTRLKKKLLGR  120 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~k------WskIAk~LPGRT~~qcKnRW~~~Lkkkl~~r  120 (367)
                      |+.||+|||++|+++|.+||.+      |++||++|||||+.|||+||+++|.+++.+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~   59 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV   59 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCC
Confidence            5899999999999999999974      9999999999999999999999999998654

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-14  Score=101.98  Aligned_cols=48  Identities=31%  Similarity=0.374  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC--CCCCHHHHHHHHHHHhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGS-RWSIIAAQL--PGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~-kWskIAk~L--PGRT~~qcKnRW~~~Lk  114 (367)
                      ++++||+|||+.|+++|.+||. +|+.||+.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 999999985  49999999999998765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-13  Score=102.78  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhHhh
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLL  118 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lkkkl~  118 (367)
                      ...||+|||++|++++..||.+|..||++||+||+.||++||+.++++..+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999999999999887654

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=3.4e-14  Score=101.10  Aligned_cols=47  Identities=21%  Similarity=0.529  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      |++||+|||++|+++|++||.  +|..||..|+ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN--RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS--CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh--HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999998  8999999998 9999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-14  Score=102.80  Aligned_cols=49  Identities=31%  Similarity=0.547  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc-CccCccccchhhcccc
Q 017727           13 KKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG-LKRCGKSCRLRWLNYL   62 (367)
Q Consensus        13 KKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg-~~Rs~kQCR~RW~n~L   62 (367)
                      |+++||+|||++|+++|.+||. ++|..|++.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~-~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999998 79999998754 4899999999999865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.4e-13  Score=95.11  Aligned_cols=43  Identities=14%  Similarity=0.344  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           70 GFSEEEDNIICSLYISIG-SRWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G-~kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      .||.|||.+|+++|.+|| ++|..||++|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8e-14  Score=99.02  Aligned_cols=44  Identities=20%  Similarity=0.659  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727           16 PWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus        16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      .||+|||++|+++|++||. ++|..||+.|+ +|++.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~-~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC-ccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            4999999999999999998 69999999999 99999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.3e-13  Score=97.90  Aligned_cols=50  Identities=12%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           63 RPNIKHGGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        63 ~P~ikkg~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      .+...+++||+|||.+|+++|..||.    +|.+||++|||||+.||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677899999999999999999995    599999999999999999999764

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.26  E-value=4.3e-12  Score=94.66  Aligned_cols=46  Identities=20%  Similarity=0.396  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           69 GGFSEEEDNIICSLYISIGS----RWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~----kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      .+||+|||++|++++..||.    +|.+||.+|||||+.||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999996    59999999999999999999976554

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-12  Score=96.93  Aligned_cols=53  Identities=17%  Similarity=0.460  Sum_probs=47.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--CceeecccccCccCccccchhhcc
Q 017727            7 CDKANVKKGPWSPEEDAKLKDYIEKYGTGG--NWIALPQKIGLKRCGKSCRLRWLN   60 (367)
Q Consensus         7 ~~Kp~lKKG~WT~EEDekL~~lV~kyG~~~--nW~~IA~~lg~~Rs~kQCR~RW~n   60 (367)
                      -+++..++++||+|||++|+++|.+||.+.  +|..||..|+ +|+++||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            356788899999999999999999999732  5999999999 9999999999964

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=6.6e-12  Score=101.41  Aligned_cols=69  Identities=16%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             ccCccccchhhcccccCCCCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhCCCCCHHHHHHHHHHHhhhH
Q 017727           48 KRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSR---WSIIAAQLPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        48 ~Rs~kQCR~RW~n~L~P~ikkg~WT~EED~~LleLv~~~G~k---WskIAk~LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      ..+..+++.++.+...+..+...||.|||++||+.++++|.+   |..||+.|+|||++|||+||..+++-.
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            566777778888888888888999999999999999999987   999999999999999999999888764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.1e-13  Score=100.23  Aligned_cols=58  Identities=22%  Similarity=0.404  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhcccccCCCCCCCCCHHH
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEE   75 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WT~EE   75 (367)
                      .+||+|||++|+++|.+||.  +|..||..|+ +||+.||+.||.+++++..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhcc--hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            57999999999999999997  9999999999 9999999999999998887777665443

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.21  E-value=1.5e-11  Score=96.46  Aligned_cols=50  Identities=24%  Similarity=0.414  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhHhhh
Q 017727           70 GFSEEEDNIICSLYISIGS-RWSIIAAQ----LPGRTDNDIKNYWNTRLKKKLLG  119 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G~-kWskIAk~----LPGRT~~qcKnRW~~~Lkkkl~~  119 (367)
                      +||.|||++|+++|.+||. +|+.|++.    +++||+.||++||+++|+.....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            7999999999999999995 99999986    68999999999999999876543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.2e-11  Score=90.06  Aligned_cols=47  Identities=13%  Similarity=0.270  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      ...||++||.+|++++..||.+|..||++|||||..||++||....+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999988654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.10  E-value=2.6e-12  Score=95.89  Aligned_cols=45  Identities=16%  Similarity=0.444  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC--CceeecccccCccCccccchhhcc
Q 017727           15 GPWSPEEDAKLKDYIEKYGTGG--NWIALPQKIGLKRCGKSCRLRWLN   60 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~~~--nW~~IA~~lg~~Rs~kQCR~RW~n   60 (367)
                      .+||+|||++|+++|.+||.+.  .|..||..|+ +|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999731  4999999999 9999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-11  Score=91.61  Aligned_cols=47  Identities=17%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           66 IKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        66 ikkg~WT~EED~~LleLv~~~G~kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      ....+||+||+.+|++++.+||.+|..||++|||||..||+++|...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.3e-10  Score=83.24  Aligned_cols=47  Identities=28%  Similarity=0.516  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      ..+||+|||++|.+++.+||.  +|..||..|+ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc--hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            457999999999999999997  8999999999 9999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.6e-10  Score=83.90  Aligned_cols=50  Identities=14%  Similarity=0.245  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccCccCccccchhhccc
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      +......+||+|||++|+++|.+||.  +|..||..|+ +|+..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~--~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS--CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC--cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            44556688999999999999999997  8999999999 99999999999754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=5.3e-09  Score=84.19  Aligned_cols=52  Identities=15%  Similarity=0.292  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCC-CCceeecccccCccCccccchhhccc
Q 017727            9 KANVKKGPWSPEEDAKLKDYIEKYGTG-GNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus         9 Kp~lKKG~WT~EEDekL~~lV~kyG~~-~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      +++.+...||.|||.+|+..++++|.. ..|..||+.|+ +|++.|||.||...
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            355677889999999999999999971 23999999998 99999999999653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.6e-06  Score=63.00  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHHHHHH
Q 017727           69 GGFSEEEDNIICSLYISIGSRWSIIAAQ-LPGRTDNDIKNYWNT  111 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G~kWskIAk~-LPGRT~~qcKnRW~~  111 (367)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999986 699999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.6e-06  Score=63.84  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 017727           69 GGFSEEEDNIICSLYISIG----SRWSIIAAQLPGRTDNDIKNYWNTRL  113 (367)
Q Consensus        69 g~WT~EED~~LleLv~~~G----~kWskIAk~LPGRT~~qcKnRW~~~L  113 (367)
                      +.||.+|+.+|.+++.+|.    .+|.+||..| |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    4799999999 999999999997543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.9e-06  Score=61.20  Aligned_cols=45  Identities=16%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhccc
Q 017727           15 GPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNY   61 (367)
Q Consensus        15 G~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~   61 (367)
                      +.||+||+.+|.+++.+|..  ...|..||..+  +|+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v--gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence            57999999999999999954  35799999999  49999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=5e-05  Score=54.83  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeeccc-ccCccCccccchhhcc
Q 017727           16 PWSPEEDAKLKDYIEKYGTGGNWIALPQK-IGLKRCGKSCRLRWLN   60 (367)
Q Consensus        16 ~WT~EEDekL~~lV~kyG~~~nW~~IA~~-lg~~Rs~kQCR~RW~n   60 (367)
                      .||+||-.++.+++..||.  +|..|++. ++ +|+..+|...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK--df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc--cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6999999999999999998  99999986 56 9999999998764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00028  Score=51.57  Aligned_cols=47  Identities=15%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---------CHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 017727           68 HGGFSEEEDNIICSLYISIGS---------RWSIIAA-QLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~---------kWskIAk-~LPGRT~~qcKnRW~~~Lk  114 (367)
                      +.+||.|||+.|++.|+.+..         =|..+++ .+|.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            568999999999999998742         2999996 6899999999999988775

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00097  Score=46.29  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHHHHHHHh
Q 017727           68 HGGFSEEEDNIICSLYISIGSRWSIIAAQL---PGRTDNDIKNYWNTRL  113 (367)
Q Consensus        68 kg~WT~EED~~LleLv~~~G~kWskIAk~L---PGRT~~qcKnRW~~~L  113 (367)
                      +..||+||-.-|...|+.+|+.|..|-=.+   |||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999997554   8999999999998763

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.0041  Score=45.85  Aligned_cols=46  Identities=11%  Similarity=0.021  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCH---HHHHhh--CCCCCHHHHHHHHHHH
Q 017727           67 KHGGFSEEEDNIICSLYISIGSRW---SIIAAQ--LPGRTDNDIKNYWNTR  112 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~kW---skIAk~--LPGRT~~qcKnRW~~~  112 (367)
                      .+-.||+||.++.++++..+|..|   ..|...  ++|+|..+|+.+...+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            355799999999999999999877   577766  5999999999887554

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=48.34  Aligned_cols=49  Identities=18%  Similarity=0.410  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-------CCceeecc-cccCccCccccchhhccccc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTG-------GNWIALPQ-KIGLKRCGKSCRLRWLNYLR   63 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~-------~nW~~IA~-~lg~~Rs~kQCR~RW~n~L~   63 (367)
                      |.+||.|||+.|+++|.++...       .=|..+++ .++ .++-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4679999999999999998532       13888885 455 8899999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.83  E-value=0.0066  Score=44.66  Aligned_cols=49  Identities=10%  Similarity=0.129  Sum_probs=36.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCc--eeeccccc-CccCccccchhhccc
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGTGGNW--IALPQKIG-LKRCGKSCRLRWLNY   61 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~~~nW--~~IA~~lg-~~Rs~kQCR~RW~n~   61 (367)
                      ..+-.||+||.++++.+|+.+|. ..|  ..|.+.|+ .+++..||+-+-+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567999999999999999997 344  35666654 367888888765554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.036  Score=41.44  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC----HHHHHhhCCCCCHHHHHHHHHHHhh
Q 017727           67 KHGGFSEEEDNIICSLYISIGSR----WSIIAAQLPGRTDNDIKNYWNTRLK  114 (367)
Q Consensus        67 kkg~WT~EED~~LleLv~~~G~k----WskIAk~LPGRT~~qcKnRW~~~Lk  114 (367)
                      ..+.|+++|=.+|-.++..+...    |..||..+..||+..|..+|...++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            45689999999999999998853    9999999999999999999876543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.015  Score=43.47  Aligned_cols=52  Identities=19%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccCccCccccchhhcccccC
Q 017727           12 VKKGPWSPEEDAKLKDYIEKYGT--GGNWIALPQKIGLKRCGKSCRLRWLNYLRP   64 (367)
Q Consensus        12 lKKG~WT~EEDekL~~lV~kyG~--~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P   64 (367)
                      ...+.|+++|=++|-.++.....  .+-|..||..+| .|++..|...|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            44578999999999999987643  257999999999 99999999999887654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.99  E-value=0.17  Score=41.52  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=42.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CC---HHHHHhh------------CCCCCHHHHHHHHHHHhhhH
Q 017727           65 NIKHGGFSEEEDNIICSLYISIG-SR---WSIIAAQ------------LPGRTDNDIKNYWNTRLKKK  116 (367)
Q Consensus        65 ~ikkg~WT~EED~~LleLv~~~G-~k---WskIAk~------------LPGRT~~qcKnRW~~~Lkkk  116 (367)
                      ..++..+|+|||+.|+-.+.+|| .+   |..|-..            |..||+..|..|.+++++--
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 45   9998532            24699999999999988754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.88  E-value=0.079  Score=36.42  Aligned_cols=45  Identities=13%  Similarity=0.198  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCceeeccccc--CccCccccchhhcc
Q 017727           14 KGPWSPEEDAKLKDYIEKYGTGGNWIALPQKIG--LKRCGKSCRLRWLN   60 (367)
Q Consensus        14 KG~WT~EEDekL~~lV~kyG~~~nW~~IA~~lg--~~Rs~kQCR~RW~n   60 (367)
                      +..||.||-.-|...|+++|.  .|..|-=.++  .+|+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~--~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc--hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            346999999999999999998  8998865554  57888777766654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.59  E-value=0.78  Score=32.01  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHH
Q 017727           70 GFSEEEDNIICSLYISIGS-RWSIIAAQLPGRTDNDIKNYWNTR  112 (367)
Q Consensus        70 ~WT~EED~~LleLv~~~G~-kWskIAk~LPGRT~~qcKnRW~~~  112 (367)
                      .|+.-|=..++.+..+||. .-..||..|.|+|...|+.+.+..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4899999999999999995 899999999999999998766543