Citrus Sinensis ID: 017764

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGANRSIENSQPVAKKRRYSGG
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccEEccEEEccccEEEEEEcccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccEEEEccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHccccccccccccccccEEEccccEEEEEcccccccccccHcHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccHHHHEHccccccccccccHHcccccccccccccccccccccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcEEEcccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
mdqnwkftrLGVLFVVLISQSLCLCWSLNDEGLALLRLRErvvrdpygaltswrscdtennpcswfgvecsdgkvvnlnlkdlclegtlapeiqslTHIKSIIlrnnsfsgiipegfgeleelevldfghnnfsgplpndlginhSLTIllldnndfvgslspEIYKLQvlsesqvdegqlssaAKKEQSCYERsikwngvldedTVQRRLLqinpfrnlkgrilgiaptsspppssdaippasvgssddtkanetssdrndsvsppklsnpapapapnqtptptpsipiprpsssqshqksggssskHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGanrsiensqpvAKKRRYSGG
Flexible Loop (DISEMBL)
mdqnwkftrLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGaltswrscdtennpCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQlssaakkeqscyersikwngvldedtvQRRLLQINPFRNLKGRILGIAptsspppssdAIPPASVGSSDDTKANetssdrndsvsppkLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKViyganrsiensqpvakkrrysgg
Low Complexity Region (SEG)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGlallrlrervvrDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPegfgeleelevldfgHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIaptsspppssdaippasVGSSDDTKANETSSDRNDSVsppklsnpapapapnqtptptpsipiprpsssqshqksggssskhiailggviggaillvaTVGIYLCRCNKVTIISKVIYGANRSIENSQPVAKKRRYSGG
Disordered region (IsUnstruct)
****WKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL*******************CYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGI*********************************************************************************HIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGAN******************
Disordered Region (DISOPRED)
*****KFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDT*QR*LL*INPFRNLKGRILGIAPTSSPPPSSDA***********T*******************N**************************************IAILGGVIGGAILLVATVGIYLCRCN************************KR*****
Disordered Region (DISEMBL)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS*******************YERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAP*******************************************************TPSI*******************KHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGANRSIEN*************
Disordered Region (DISPRO)
***NWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRP**********GSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGANRSIENSQPVAKKR*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTIISKVIYGANRSIENSQPVAKKRRYSGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
C0LGU7	695	Probable LRR receptor-lik	no	no	0.691	0.364	0.349	4e-28
C0LGQ4	678	Probable LRR receptor-lik	no	no	0.426	0.230	0.439	2e-27
C0LGH8	664	Probable LRR receptor-lik	no	no	0.412	0.227	0.335	8e-21
Q9C9N5	685	Probable inactive leucine	no	no	0.420	0.224	0.369	2e-19
Q93ZS4	632	Protein NSP-INTERACTING K	no	no	0.368	0.213	0.376	8e-19
C0LGS3	768	Probable LRR receptor-lik	no	no	0.844	0.402	0.278	9e-19
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.387	0.223	0.351	1e-18
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.475	0.159	0.364	1e-17
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.390	0.129	0.4	2e-17
P93194	1109	Receptor-like protein kin	N/A	no	0.396	0.130	0.358	3e-17

>sp|C0LGU7|Y5458_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 131/269 (48%), Gaps = 16/269 (5%)

Query: 32  GLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAP 91
           G  LL+ R RV  DP+G L +W   D  ++ CSWFGV C D KV  LNL    L GTLAP
Sbjct: 34  GFVLLKFRARVDSDPHGTLANWNVSD-HDHFCSWFGVTCVDNKVQMLNLSGCSLGGTLAP 92

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151
           E+  L+ ++S+IL  N  SG IP  F    +LE LD   NN +G +P +L    +   LL
Sbjct: 93  ELSQLSELRSLILSKNKLSGDIPNEFASFAKLEFLDLRDNNLNGVVPPELNKVLTPENLL 152

Query: 152 LDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAAKKEQSCYERSIKWNGVLDEDTVQRR 210
           L  N F G ++ +  +LQ L + Q+++  +LSS +     C  R + +        V RR
Sbjct: 153 LSGNKFAGFMTVKFLRLQSLYKVQMNKNRELSSVSADVLDCVNRKLGY-------CVSRR 205

Query: 211 LLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLS 270
            L        K  +L I  TS            +   +     NETS  +   +   + S
Sbjct: 206 SLITR--NKAKAFVLRIRATSRHYMVRRESHGKNYVVNYHPSENETSIFKRRELL-EETS 262

Query: 271 NPAPAPAPNQTPTPTP---SIPIPRPSSS 296
           N A  PAP+ TP+P+P   +I  PR S S
Sbjct: 263 NLAAMPAPD-TPSPSPEIITIVFPRSSGS 290

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ4|MRH1_ARATH Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 13  LFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD 72
            F ++I     L  SL  +G ALL+ R RV  DP+G L +W      N+ C W GV C D
Sbjct: 11  FFFLIIGLQAPLSLSLTSQGSALLKFRARVNSDPHGTLANWNVSGI-NDLCYWSGVTCVD 69

Query: 73  GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           GKV  L+L    LEGTLAPE+  L+ ++S+IL  N FSG IP+ +G  E LEVLD   N+
Sbjct: 70  GKVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLREND 129

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 169
            SG +P +L    SL  LLL  N F   +  +I +LQ
Sbjct: 130 LSGQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRLQ 166

May be involved in the regulation of root hairs development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 29  NDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGK--VVNLNLKDLCLE 86
           ++E  AL R +E +  DP   +++W   D  ++PC W G+ CS  K  V+ +N+    ++
Sbjct: 25  SNEVQALRRFKEAIYEDPLLVMSNWN--DPNSDPCDWTGIYCSPSKDHVIKINISASSIK 82

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHS 146
           G LAPE+  +T+++ +IL  N   G IP+  G L+ L++LD G+N+  GP+P ++G    
Sbjct: 83  GFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSG 142

Query: 147 LTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
           + I+ L +N   G L  E+  L+ L E  +D  +L
Sbjct: 143 IMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRL 177

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 7   FTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWF 66
            ++L ++   +++    +  SLND+GLALL  ++ +        T+W S D+  NPCSW 
Sbjct: 1   MSQLFLILCFILTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDS--NPCSWQ 58

Query: 67  GVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV 125
           GV C+ D +VV++ L +  L G+L P I SL  ++ I LR+N F G +P     L+ L+ 
Sbjct: 59  GVTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQS 118

Query: 126 LDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162
           L    N+FSG +P ++G   SL  L L  N F GS+S
Sbjct: 119 LVLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSIS 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 5   WKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS 64
           W+   L  ++   IS +      +N E  AL+ ++  +  DPY  L +W     +  PCS
Sbjct: 9   WRLGFLVFVWFFDISSATLSPTGVNYEVTALVAVKNEL-NDPYKVLENWDVNSVD--PCS 65

Query: 65  WFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE 124
           W  V C+DG V +L+L    L GTL+P I +LT+++S++L+NN+ +G IPE  G LE+L+
Sbjct: 66  WRMVSCTDGYVSSLDLPSQSLSGTLSPRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQ 125

Query: 125 VLDFGHNNFSGPLPNDLG 142
            LD  +N+F+G +P  LG
Sbjct: 126 SLDLSNNSFTGEIPASLG 143

Involved in defense response to geminivirus infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 154/345 (44%), Gaps = 36/345 (10%)

Query: 27  SLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCL 85
           +LN +GL L++ +  V+ DP   L +W       +PCSW G+ C+ D KV+ L+L +  L
Sbjct: 21  ALNSDGLVLMKFKSSVLVDPLSLLQTWNY--KHESPCSWRGISCNNDSKVLTLSLPNSQL 78

Query: 86  EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH 145
            G++  ++ SL  ++S+ L NNSF+G +P  F    EL  LD   N  SG +P+ +G  H
Sbjct: 79  LGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLH 138

Query: 146 SLTILLLDNNDFVGSLSPEIYKLQVLS----ESQVDEGQLSSAAKKEQSCYERSIKWNGV 201
           +L  L L +N   G L   +  L+ L+    E+    G++    +  +     S   NG 
Sbjct: 139 NLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIPGGWRVVEFLDLSSNLINGS 198

Query: 202 LDEDTVQRRLLQIN-PFRNLKGRI---------------LGIAPTSSPPPSSDAI--PPA 243
           L  D     L  +N  F  + G I               L     + P P S       +
Sbjct: 199 LPPDFGGYSLQYLNVSFNQISGEIPPEIGVNFPRNVTVDLSFNNLTGPIPDSPVFLNQES 258

Query: 244 SVGSSDDTKANETSSDRNDSVSP--PKLSN----PAPAPAPNQTPTPTPSIPIPRPSSSQ 297
           +  S +     E +  RN  + P  P + +    P   PA    P    S P+  P+S Q
Sbjct: 259 NFFSGNPGLCGEPT--RNPCLIPSSPSIVSEADVPTSTPAIAAIPNTIGSNPVTDPNSQQ 316

Query: 298 S--HQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTII 340
           +  + ++G      I I+ G I G I ++A + +Y+ RC K  I+
Sbjct: 317 TDPNPRTGLRPGVIIGIVVGDIAG-IGILAVIFLYIYRCKKNKIV 360

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 3/145 (2%)

Query: 28  LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEG 87
           +N E +AL+ ++  +  DP+G L +W   DT  +PCSW  + CSDG V+ L      L G
Sbjct: 39  VNFEVVALIGIKSSLT-DPHGVLMNWD--DTAVDPCSWNMITCSDGFVIRLEAPSQNLSG 95

Query: 88  TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147
           TL+  I +LT++++++L+NN  +G IP   G+L +L+ LD   NNF+G +P  L  + +L
Sbjct: 96  TLSSSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNL 155

Query: 148 TILLLDNNDFVGSLSPEIYKLQVLS 172
             L ++NN   G++   +  +  L+
Sbjct: 156 QYLRVNNNSLTGTIPSSLANMTQLT 180

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 6   KFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS- 64
           + T L  LFV     S+    SLN +GLALL L +   + P    ++W+   +E  PC+ 
Sbjct: 8   EITLLCSLFVYFRIDSVS---SLNSDGLALLSLLKHFDKVPLEVASTWKENTSETTPCNN 64

Query: 65  -WFGVECS-DGKVV-NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
            WFGV C   G VV  LNL    L G L  EI  L  + ++ L  NSFSG++P   G   
Sbjct: 65  NWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCT 124

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
            LE LD  +N+FSG +P+  G   +LT L LD N+  G +   +  L  L + ++    L
Sbjct: 125 SLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNL 184

Query: 182 S 182
           S
Sbjct: 185 S 185

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 28  LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS----DGKVVNLNLKDL 83
           LN EG  LL ++ + V D    L +W S D+   PC W GV CS    D +V++LNL  +
Sbjct: 27  LNLEGQYLLEIKSKFV-DAKQNLRNWNSNDSV--PCGWTGVMCSNYSSDPEVLSLNLSSM 83

Query: 84  CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 143
            L G L+P I  L H+K + L  N  SG IP+  G    LE+L   +N F G +P ++G 
Sbjct: 84  VLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGK 143

Query: 144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             SL  L++ NN   GSL  EI  L  LS+
Sbjct: 144 LVSLENLIIYNNRISGSLPVEIGNLLSLSQ 173

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 13  LFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD 72
           L  +  + S+   ++LN +G ALL L       P     SW + D+   PCSW GVEC  
Sbjct: 9   LLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDS--TPCSWLGVECDR 66

Query: 73  GKVVN-LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
            + V+ LNL    + G   PEI  L H+K ++L  N F G IP   G    LE +D   N
Sbjct: 67  RQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSN 126

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVG 159
           +F+G +P+ LG   +L  L L  N  +G
Sbjct: 127 SFTGNIPDTLGALQNLRNLSLFFNSLIG 154

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
449519434	608	PREDICTED: probable LRR receptor-like se	0.901	0.542	0.463	2e-68
449460929	680	PREDICTED: probable LRR receptor-like se	0.901	0.485	0.463	4e-68
224101185	202	predicted protein [Populus trichocarpa]	0.532	0.965	0.705	7e-68
225434508	720	PREDICTED: probable LRR receptor-like se	0.581	0.295	0.6	1e-67
356569292	644	PREDICTED: probable LRR receptor-like se	0.819	0.465	0.452	3e-65
356551399	643	PREDICTED: probable LRR receptor-like se	0.841	0.479	0.464	3e-65
356537999	638	PREDICTED: probable LRR receptor-like se	0.786	0.451	0.476	1e-62
297745855	195	unnamed protein product [Vitis vinifera]	0.502	0.943	0.659	1e-61
225448517	654	PREDICTED: probable LRR receptor-like se	0.560	0.313	0.607	9e-61
297736571	670	unnamed protein product [Vitis vinifera]	0.535	0.292	0.628	4e-60

>gi|449519434|ref|XP_004166740.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like, partial [Cucumis sativus]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/360 (46%), Positives = 213/360 (59%), Gaps = 30/360 (8%)

Query: 3   QNWKFTRL-------GVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRS 55
           QN  F R        G + + L+ QS  L WSLN+EGL LL+ RERVV DP+G L++W  
Sbjct: 5   QNLSFHRFRLRIGVYGFVVISLLFQSFHLSWSLNEEGLTLLKFRERVVNDPFGVLSNWND 64

Query: 56  CDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE 115
              + NPC WFGVECSDGKVV+LNLKDLCLEGTL PE+++L HIKSI LRNNSF+G IP+
Sbjct: 65  HKEDINPCFWFGVECSDGKVVSLNLKDLCLEGTLTPELKNLVHIKSINLRNNSFTGTIPQ 124

Query: 116 GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
           G G LEELEVLD G+NNF GPLP+DLG N SL ILLLDNN  + SLSPEIY+LQ+LSE Q
Sbjct: 125 GLGGLEELEVLDLGYNNFCGPLPSDLGSNLSLGILLLDNNKDLRSLSPEIYQLQLLSEFQ 184

Query: 176 VDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFR---NLKGRILG-IAPTS 231
           VDE QLS+ A+    C + S+  + V  +D+  RR L+ +  +    ++GR+   + P +
Sbjct: 185 VDENQLSNTAEGSL-CNKESMSCDAVQVKDSRGRRELRASASQAQLTIQGRVAEVVVPLT 243

Query: 232 SPPPS---SD---------AIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPN 279
            P PS   SD         + P  + GS         S+  N +  PP       AP+  
Sbjct: 244 PPSPSGGNSDRPPSNSPPPSPPAGAQGSQPPPPGTGISTSNNATSPPPSFK----APSEK 299

Query: 280 QTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTI 339
             P     +P P+PSS Q   K+  S    + +  G     I L   VGIYL   NK T+
Sbjct: 300 TPPAAPEGLPSPQPSSKQQGGKNKSSVGVVVGVSVGAAVFVIAL--AVGIYLWTNNKATV 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460929|ref|XP_004148196.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Cucumis sativus]

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 167/360 (46%), Positives = 213/360 (59%), Gaps = 30/360 (8%)

Query: 3   QNWKFTRL-------GVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRS 55
           QN  F R        G + + L+ QS  L WSLN+EGL LL+ RERVV DP+G L++W  
Sbjct: 5   QNLSFHRFRLRIGVYGFVVISLLFQSFHLSWSLNEEGLTLLKFRERVVNDPFGVLSNWND 64

Query: 56  CDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE 115
              + NPC WFGVECSDGKVV+LNLKDLCLEGTL PE+++L HIKSI LRNNSF+G IP+
Sbjct: 65  HKEDINPCFWFGVECSDGKVVSLNLKDLCLEGTLTPELKNLVHIKSINLRNNSFTGTIPQ 124

Query: 116 GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
           G G LEELEVLD G+NNF GPLP+DLG N SL ILLLDNN  + SLSPEIY+LQ+LSE Q
Sbjct: 125 GLGGLEELEVLDLGYNNFCGPLPSDLGSNLSLGILLLDNNKDLRSLSPEIYQLQLLSEFQ 184

Query: 176 VDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFR---NLKGRILG-IAPTS 231
           VDE QLS+ A+    C + S+  + V  +D+  RR L+ +  +    ++GR+   + P +
Sbjct: 185 VDENQLSNTAEGSL-CNKESMSCDAVQVKDSRGRRELRASASQAQLTIQGRVAEVVVPLT 243

Query: 232 SPPPS---SD---------AIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPN 279
            P PS   SD         + P  + GS         S+  N +  PP       AP+  
Sbjct: 244 PPSPSGGNSDRPPSNSPPPSPPAGAQGSQPPPPGTGISTSNNATSPPPSFK----APSEK 299

Query: 280 QTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIGGAILLVATVGIYLCRCNKVTI 339
             P     +P P+PSS Q   K+  S    + +  G     I L   VGIYL   NK T+
Sbjct: 300 TPPAAPEGLPSPQPSSKQQGGKNKSSVGVVVGVSVGAAVFVIALA--VGIYLWTNNKATV 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101185|ref|XP_002312176.1| predicted protein [Populus trichocarpa] gi|222851996|gb|EEE89543.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 157/197 (79%), Gaps = 2/197 (1%)

Query: 3   QNWKFTRLGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNP 62
            NWK +R GVL + L+ Q+L LC+SLNDEG+ALL+LRE +V DPYGAL SW+      NP
Sbjct: 4   NNWKISRFGVLILFLVYQNLILCFSLNDEGMALLKLREGIVSDPYGALKSWKMDFGVINP 63

Query: 63  CSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
           CSWFGVECS DGKVV LNLKDLCLEGTLAPEI +L HIKSIILRNNSFSGIIPEG GEL+
Sbjct: 64  CSWFGVECSYDGKVVVLNLKDLCLEGTLAPEITNLVHIKSIILRNNSFSGIIPEGVGELK 123

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
            LEVLDFG+NNFSGPLP DLG N SL ILLLDNN+ + SLS EI  L+ LSE QVDE +L
Sbjct: 124 ALEVLDFGYNNFSGPLPPDLGSNPSLAILLLDNNERLRSLSSEIQHLETLSEFQVDENEL 183

Query: 182 SSAAKKEQSCYERSIKW 198
           S+AAK   S  +RSI W
Sbjct: 184 SNAAKG-SSRNKRSITW 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434508|ref|XP_002278392.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Vitis vinifera]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/220 (60%), Positives = 160/220 (72%), Gaps = 7/220 (3%)

Query: 1   MDQNWKFTR------LGVLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWR 54
           MD  W+F R      + ++ + L+ Q L LCW LN EGLALL+ RE VV+DP+GAL+ W 
Sbjct: 1   MDGKWRFNRFKLRAAMTMVVISLLHQHLRLCWCLNSEGLALLKFRESVVKDPFGALSDWN 60

Query: 55  SCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP 114
               E + CSWFGVECSDGKVV LNL+DLCL GT+APE+  L  IKSIILRNNSFSG IP
Sbjct: 61  DSGGEVDHCSWFGVECSDGKVVILNLRDLCLVGTMAPEVGKLAFIKSIILRNNSFSGNIP 120

Query: 115 EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
           +  GEL+ELEVLD G+NNFSG  P+D G N SLTILLLDNN+F+GS+SPEIY+L++LSE 
Sbjct: 121 KDIGELKELEVLDLGYNNFSGSFPSDFGNNQSLTILLLDNNEFLGSISPEIYELKMLSEY 180

Query: 175 QVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQI 214
           QVDE QLSSAA    +C  RSI  +     D   RR+LQ+
Sbjct: 181 QVDENQLSSAASG-PTCKSRSISGDTAQPRDVSYRRVLQV 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569292|ref|XP_003552837.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/345 (45%), Positives = 202/345 (58%), Gaps = 45/345 (13%)

Query: 20  QSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLN 79
           Q+  LC SLN+EG ALL+ +  +V DP+ AL++W + +   NPC+WFGVECSDG+VV LN
Sbjct: 27  QNFSLCCSLNEEGKALLKFKHGIVNDPFDALSNWVNDEVAVNPCNWFGVECSDGRVVVLN 86

Query: 80  LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 139
           LKDLCLEG L PE+ +L HIKSIILRNNSF GIIPEG   L ELEVLD G+NNFSGPLP 
Sbjct: 87  LKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFSGPLPR 146

Query: 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN 199
           DLG N SLTILLLDNND +   SPEI +L++LSE QVDE QL   A+K  +C  RSIK  
Sbjct: 147 DLGNNISLTILLLDNNDHLCGFSPEINELKMLSEYQVDENQLIR-AEKVPAC-RRSIKQ- 203

Query: 200 GVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSS- 258
                   Q R +  N  +N   R+L         P +   P +             +  
Sbjct: 204 --------QSRHVGQN--KNGVQRLLQTRTHEGGSPFNRVFPVSPAPFPSAPPPAPATPP 253

Query: 259 --------DRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHI 310
                   DRN+S S      P+P P P        S P+ + SSS++H          +
Sbjct: 254 VVQKPAPVDRNNSAS------PSPLPGPR-------SAPLYKSSSSKNHV---------V 291

Query: 311 AILGGVIGGAI-LLVATVGIYLCRCNKVTIISKVIYGANRSIENS 354
            IL GV+GGA+ LL++ +G+YLC+ NKV  +     G +  ++N+
Sbjct: 292 VILAGVMGGAVFLLISIIGLYLCKTNKVATVKPWATGLSGQLQNA 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551399|ref|XP_003544063.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/342 (46%), Positives = 209/342 (61%), Gaps = 34/342 (9%)

Query: 1   MDQNWKFTR---LGVLF----VVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSW 53
           MD+N K +R   L + F    V  +   L LC SLN+EG ALL+LR+R+V DP+ AL++W
Sbjct: 1   MDKNRKLSRFKDLSIAFCFVAVFFLFHHLGLCCSLNEEGNALLKLRQRIVSDPFDALSNW 60

Query: 54  RSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII 113
              +   +PC+WFGVECSDG+VV LNLKDLCL GTLAPE+  L +IKSIILRNNSFSG I
Sbjct: 61  VDDEASVDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELVKLVNIKSIILRNNSFSGTI 120

Query: 114 PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           PEGF +L+ELEVLD G+NNFSG LP DLG N SLTILLLDNN+F+  LSPEI +L++LSE
Sbjct: 121 PEGFVQLKELEVLDLGYNNFSGHLPADLGSNISLTILLLDNNEFLVGLSPEINELRMLSE 180

Query: 174 SQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSP 233
            QVDE QL++AAK   +C ER+             R + Q        G+    +  S+ 
Sbjct: 181 CQVDENQLTNAAKM-PACTERA-----------TTRHIGQ--------GKGTRRSQHSNT 220

Query: 234 PPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRP 293
            P+++      V +      +  S+  + S  P     P P  AP++      S P    
Sbjct: 221 SPAANHYQFNRVAAPPLESPSSPSASPSGSAKP-----PVPKLAPHRKNASDSSPPHSTS 275

Query: 294 -SSSQSHQKSGGSSSKHIAILGGVIGGAILLV-ATVGIYLCR 333
            S + S  KS  S    + IL GVIGGA+ L+ +++GIYLC+
Sbjct: 276 GSGTLSKTKSTSSKVHTVPILAGVIGGAVFLIFSSIGIYLCK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537999|ref|XP_003537493.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 202/323 (62%), Gaps = 35/323 (10%)

Query: 20  QSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLN 79
           Q+  LC SLN+EG ALL+ ++ +V DP+ AL++W + + E NPC+WFGVECSDG+VV LN
Sbjct: 27  QNFSLCCSLNEEGKALLKFKQGIVNDPFDALSNWVNDEVEVNPCNWFGVECSDGRVVVLN 86

Query: 80  LKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN 139
           LKDLCLEG L PE+ +L HIKSIILRNNSF GIIP+G   L E+EVLD G+NNFSGPLP 
Sbjct: 87  LKDLCLEGNLVPELANLVHIKSIILRNNSFHGIIPQGIAHLNEMEVLDLGYNNFSGPLPT 146

Query: 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE-QSCYERSIKW 198
           DLG N  LTILLLDNND +   SPEI +L+++SE QVDE QLSSA K   +S    + + 
Sbjct: 147 DLGNNIPLTILLLDNNDHLCGFSPEINELKMVSEYQVDENQLSSAEKVPIRSIKRHAGQN 206

Query: 199 NGVLDEDTVQRRLLQINPFRNLKGRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSS 258
           NGV       R+LLQ+   R  +G            P +   P        D+ A   S+
Sbjct: 207 NGV-------RKLLQV---RTREGG----------SPFNRVFP--------DSPAPFPSA 238

Query: 259 DRNDSVSPPKLSNPAPAPAPNQTPTPTPSIPIPRPSSSQSHQKSGGSSSKHIAILGGVIG 318
                 +PP +  PAP    N + +P+P +P PR   S    KS  S +  + IL GV+G
Sbjct: 239 PSPAPATPPVVQKPAPVDR-NNSASPSP-LPEPR---SAPLSKSSSSKNHLVVILAGVMG 293

Query: 319 GAI-LLVATVGIYLCRCNKVTII 340
           G + LL++ +G+YLC+ NKV  +
Sbjct: 294 GVVFLLISIIGLYLCKTNKVATV 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745855|emb|CBI15911.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 145/185 (78%), Gaps = 1/185 (0%)

Query: 12  VLFVVLISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS 71
           ++ + L+ Q L LCW LN EGLALL+ RE VV+DP+GAL+ W     E + CSWFGVECS
Sbjct: 1   MVVISLLHQHLRLCWCLNSEGLALLKFRESVVKDPFGALSDWNDSGGEVDHCSWFGVECS 60

Query: 72  DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
           DGKVV LNL+DLCL GT+APE+  L  IKSIILRNNSFSG IP+  GEL+ELEVLD G+N
Sbjct: 61  DGKVVILNLRDLCLVGTMAPEVGKLAFIKSIILRNNSFSGNIPKDIGELKELEVLDLGYN 120

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC 191
           NFSG  P+D G N SLTILLLDNN+F+GS+SPEIY+L++LSE QVDE QLSSAA    +C
Sbjct: 121 NFSGSFPSDFGNNQSLTILLLDNNEFLGSISPEIYELKMLSEYQVDENQLSSAASG-PTC 179

Query: 192 YERSI 196
             RSI
Sbjct: 180 KSRSI 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448517|ref|XP_002273218.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Vitis vinifera]

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 157/219 (71%), Gaps = 14/219 (6%)

Query: 10  LGVLFVVL---ISQSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWF 66
           LG+L VV+   + Q+L LCWSLNDEGLALLR RERVV DP+ AL +W   D E +PCSWF
Sbjct: 9   LGILMVVIMCSLYQNLGLCWSLNDEGLALLRFRERVVSDPFRALANWD--DGELDPCSWF 66

Query: 67  GVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL 126
           GVECSDGKVV LNLKDLCL GTLAPE+ SL +IKSIILRNNSFSG IPE  GEL+ELEVL
Sbjct: 67  GVECSDGKVVILNLKDLCLRGTLAPELGSLANIKSIILRNNSFSGTIPEEIGELKELEVL 126

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186
           D G+NN   P+P +LG N SLTILLLDNN  + SL  +I++L VLSESQVDE +LS+ AK
Sbjct: 127 DLGYNNLCVPIPANLGNNLSLTILLLDNNVLISSLPSQIHELVVLSESQVDENRLSNIAK 186

Query: 187 KEQ----SCYERSIKWNGVLDEDTVQRRLLQINPFRNLK 221
                  SC  ++ +      ED V  RLL     R ++
Sbjct: 187 ISSLHGGSCTRKTDQ-----TEDVVHHRLLSTAEDRRVR 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736571|emb|CBI25442.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/210 (62%), Positives = 154/210 (73%), Gaps = 14/210 (6%)

Query: 10  LGVLFVVLIS---QSLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWF 66
           LG+L VV++    Q+L LCWSLNDEGLALLR RERVV DP+ AL +W   D E +PCSWF
Sbjct: 71  LGILMVVIMCSLYQNLGLCWSLNDEGLALLRFRERVVSDPFRALANWD--DGELDPCSWF 128

Query: 67  GVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL 126
           GVECSDGKVV LNLKDLCL GTLAPE+ SL +IKSIILRNNSFSG IPE  GEL+ELEVL
Sbjct: 129 GVECSDGKVVILNLKDLCLRGTLAPELGSLANIKSIILRNNSFSGTIPEEIGELKELEVL 188

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186
           D G+NN   P+P +LG N SLTILLLDNN  + SL  +I++L VLSESQVDE +LS+ AK
Sbjct: 189 DLGYNNLCVPIPANLGNNLSLTILLLDNNVLISSLPSQIHELVVLSESQVDENRLSNIAK 248

Query: 187 KEQ----SCYERSIKWNGVLDEDTVQRRLL 212
                  SC  ++ +      ED V  RLL
Sbjct: 249 ISSLHGGSCTRKTDQ-----TEDVVHHRLL 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
TAIR|locus:2182915	553	AT5G07150 [Arabidopsis thalian	0.363	0.240	0.411	7.2e-21
TAIR|locus:2124102	678	MRH1 "morphogenesis of root ha	0.467	0.252	0.346	1.3e-18
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.382	0.221	0.340	3e-18
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.418	0.223	0.326	4.6e-18
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.491	0.301	0.287	7.2e-18
TAIR|locus:2033000	702	AT1G25320 [Arabidopsis thalian	0.423	0.220	0.325	1.8e-15
TAIR|locus:2038706	716	AT2G01210 [Arabidopsis thalian	0.459	0.234	0.309	1e-14
TAIR|locus:2058598	773	AT2G23300 [Arabidopsis thalian	0.456	0.216	0.305	1.2e-14
TAIR|locus:2163056	664	AT5G41180 [Arabidopsis thalian	0.368	0.203	0.280	3.1e-14
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.407	0.134	0.318	3.2e-14

TAIR|locus:2182915 AT5G07150 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 7.2e-21, P = 7.2e-21
 Identities = 58/141 (41%), Positives = 73/141 (51%)

Query:     2 DQNWKFTRLGVL---FVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDT 58
             DQ W+  R       F+  +  +L      N E             DP+GAL +W     
Sbjct:     4 DQRWRLLRPAFFIFFFLFFLPHNLTFGLCFNTEALALMKFKERIEIDPFGALVNWG---- 59

Query:    59 ENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXX 117
             E + CSW GV CS DG+VV LNL+DL L+GTLAPE+ +LTH+KS+ILRNNSFSG +P   
Sbjct:    60 ELSHCSWSGVVCSHDGRVVILNLRDLSLQGTLAPELGNLTHLKSLILRNNSFSGKVPEEV 119

Query:   118 XXXXXXXXXXXXHNNFSGPLP 138
                          NNF  P P
Sbjct:   120 TELQELEILDLCDNNFGQPFP 140

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2124102 MRH1 "morphogenesis of root hair 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 60/173 (34%), Positives = 82/173 (47%)

Query:    14 FVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECSDG 73
             F ++I     L  SL  +G            DP+G L +W      N+ C W GV C DG
Sbjct:    12 FFLIIGLQAPLSLSLTSQGSALLKFRARVNSDPHGTLANWNVSGI-NDLCYWSGVTCVDG 70

Query:    74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNF 133
             KV  L+L    LEGTLAPE+  L+ ++S+IL  N FSG IP                N+ 
Sbjct:    71 KVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDL 130

Query:   134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAA 185
             SG +P +L    SL  LLL  N F   +  +I +LQ   E ++ +  +LS  A
Sbjct:   131 SGQIPPELSNGLSLKHLLLSGNKFSDDMRIKIVRLQSSYEVRLKKSPKLSPLA 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 49/144 (34%), Positives = 79/144 (54%)

Query:    45 DPYGALTSWRSCDTEN-NPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSII 103
             DPY  L +W   D  + +PCSW  V C+DG V +L+L    L GTL+P I +LT+++S++
Sbjct:    48 DPYKVLENW---DVNSVDPCSWRMVSCTDGYVSSLDLPSQSLSGTLSPRIGNLTYLQSVV 104

Query:   104 LRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
             L+NN+ +G IP               +N+F+G +P  LG   +L  L L+NN  +G+   
Sbjct:   105 LQNNAITGPIPETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYLRLNNNSLIGTCPE 164

Query:   164 EIYKLQVLSESQVDEGQLSSAAKK 187
              + K++ L+   +    LS +  K
Sbjct:   165 SLSKIEGLTLVDISYNNLSGSLPK 188

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
 Identities = 51/156 (32%), Positives = 77/156 (49%)

Query:     8 TRLGVLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFG 67
             ++L ++   +++    +  SLND+G                  T+W S D+  NPCSW G
Sbjct:     2 SQLFLILCFILTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDS--NPCSWQG 59

Query:    68 VECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXX 126
             V C+ D +VV++ L +  L G+L P I SL  ++ I LR+N F G +P            
Sbjct:    60 VTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSL 119

Query:   127 XXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162
                 N+FSG +P ++G   SL  L L  N F GS+S
Sbjct:   120 VLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSIS 155

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 52/181 (28%), Positives = 86/181 (47%)

Query:     3 QNWKFTRLGVLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNP 62
             +N    ++ +LF + +S  +     LN +G             P    ++W++  +E  P
Sbjct:     2 ENLGLFQILLLFCLFVSVRIVSVSCLNSDGLTLLSLRKHLDKVPPELTSTWKTNASEATP 61

Query:    63 CSWFGVECSDGK-VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXX 121
             C+WFG+ C D K V +LN     + G L PEI  L  ++ + + +N+FSGIIP       
Sbjct:    62 CNWFGIICDDSKKVTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCS 121

Query:   122 XXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181
                      N+FSG +P+ LG   SL  L L +N   G L   ++++ VL+   V+   L
Sbjct:   122 SLVYIDLSENSFSGKVPDTLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVEHNNL 181

Query:   182 S 182
             +
Sbjct:   182 T 182

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033000 AT1G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 52/160 (32%), Positives = 76/160 (47%)

Query:    27 SLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTEN-NPCSWFGVECSDGKVV-NLNLKDLC 84
             +LNDEG            DP G+L++W S   EN NPCSW GV C D KVV +L++    
Sbjct:    22 ALNDEGFALLTLKQSISKDPDGSLSNWNS---ENQNPCSWNGVTCDDNKVVVSLSIPKKK 78

Query:    85 LEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGIN 144
             L G L   +  L++++ + LR+N  SG +P                N  SG +PN++G  
Sbjct:    79 LLGYLPSSLGLLSNLRHLNLRSNELSGNLPVELFKAQGLQSLVLYGNFLSGSIPNEIGDL 138

Query:   145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184
               L IL L  N   GS+   + K   L    + +  L+ +
Sbjct:   139 KFLQILDLSRNSLNGSIPESVLKCNRLRSFDLSQNNLTGS 178

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2038706 AT2G01210 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 53/171 (30%), Positives = 78/171 (45%)

Query:    12 VLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECS 71
             ++FV L+  ++ +   LNDEG            DP G+L +W S D   N CSW GV C 
Sbjct:     6 IIFVALLC-NVTVISGLNDEGFALLTFKQSVHDDPTGSLNNWNSSD--ENACSWNGVTCK 62

Query:    72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHN 131
             + +VV+L++    L G+L   +  L+ ++ + LR+N F G +P                N
Sbjct:    63 ELRVVSLSIPRKNLYGSLPSSLGFLSSLRHLNLRSNRFYGSLPIQLFHLQGLQSLVLYGN 122

Query:   132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
             +F G L  ++G    L  L L  N F GSL   I +   L    V    LS
Sbjct:   123 SFDGSLSEEIGKLKLLQTLDLSQNLFNGSLPLSILQCNRLKTLDVSRNNLS 173

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2058598 AT2G23300 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 52/170 (30%), Positives = 78/170 (45%)

Query:    14 FVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECS-D 72
             F    S    L  +LN +G            DP   L SW + D  +NPCSW GV C+ D
Sbjct:    17 FFFFFSSLFLLSSALNSDGVLLLSFKYSVLLDPLSLLQSW-NYD-HDNPCSWRGVLCNND 74

Query:    73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNN 132
              +VV L+L +  L G++  ++  L +++S+ L NNS +G +P               +N 
Sbjct:    75 SRVVTLSLPNSNLVGSIPSDLGFLQNLQSLNLSNNSLNGSLPVEFFAADKLRFLDLSNNL 134

Query:   133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
              SG +P  +G  H+L  L L +N F G L   +  L  L+E  +     S
Sbjct:   135 ISGEIPVSIGGLHNLQTLNLSDNIFTGKLPANLASLGSLTEVSLKNNYFS 184

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2163056 AT5G41180 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.1e-14, P = 3.1e-14
 Identities = 39/139 (28%), Positives = 70/139 (50%)

Query:    45 DPYGALTSWRSCDTENNPCSWFGVECSDGK--VVNLNLKDLCLEGTLAPEIQSLTHIKSI 102
             DP   +++W   +   +PC W G++CS  K  ++ +N+    + G L PE+  +T+++ +
Sbjct:    46 DPLLVMSNWNVPNL--SPCDWNGIKCSPSKDHIIKINISGTSMRGFLVPELGQITYLQEL 103

Query:   103 ILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162
             ILR N   G IP               +N+ +GP+P ++G    +  + L +N  +G L 
Sbjct:   104 ILRGNILMGTIPKEIGKLKKLKILDLGNNHLTGPIPAEIGKLSRIKTINLQSNGLIGKLP 163

Query:   163 PEIYKLQVLSESQVDEGQL 181
             PEI  L+ L E  +   +L
Sbjct:   164 PEIGNLKHLKELLIGRNRL 182

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 196 (74.1 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 49/154 (31%), Positives = 69/154 (44%)

Query:    12 VLFVVLISQSLCLCWSLNDEGXXXXXXXXXXXXDPYGALTSWRSCDTENNPCSWFGVECS 71
             +LF+   S S+   ++LN +G             P     SW + D+   PCSW GVEC 
Sbjct:     9 LLFLCSTS-SIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDS--TPCSWLGVECD 65

Query:    72 DGKVVN-LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXH 130
               + V+ LNL    + G   PEI  L H+K ++L  N F G IP                
Sbjct:    66 RRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSS 125

Query:   131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE 164
             N+F+G +P+ LG   +L  L L  N  +G   PE
Sbjct:   126 NSFTGNIPDTLGALQNLRNLSLFFNSLIGPF-PE 158

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0010004601	hypothetical protein (202 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00700255	hypothetical protein (110 aa)			•						0.489
	gw1.XII.1267.1	hypothetical protein (189 aa)			•						0.483
	eugene3.182110001	hypothetical protein (138 aa)			•						0.479
	eugene3.49630001	hypothetical protein (170 aa)			•						0.463
	grail3.1375000101	hypothetical protein (176 aa)			•						0.460
	gw1.20315.1.1	hypothetical protein (89 aa)			•						0.459
	eugene3.00030141	hypothetical protein (224 aa)			•						0.451
	eugene3.44980001	annotation not avaliable (200 aa)			•						0.431
	eugene3.00161331	hypothetical protein (261 aa)			•						0.425
	eugene3.02660005	hypothetical protein (277 aa)			•						0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam04652	315	pfam04652, DUF605, Vta1 like	0.001
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.003
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 11/112 (9%)

Query: 61  NPCS-----WFGVEC----SDGK--VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
           +PC      W G +C    + GK  +  L L +  L G +  +I  L H++SI L  NS 
Sbjct: 395 DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI 454

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSL 161
            G IP   G +  LEVLD  +N+F+G +P  LG   SL IL L+ N   G +
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 28  LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD-GKVVNLNLKDLCLE 86
           L+ E L LL   +  + DP   L++W S     + C W G+ C++  +VV+++L    + 
Sbjct: 26  LHAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNNSSRVVSIDLSGKNIS 82

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINH 145
           G ++  I  L +I++I L NN  SG IP+  F     L  L+  +NNF+G +P   G   
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140

Query: 146 SLTILLLDNNDFVGSLSPEI 165
           +L  L L NN   G +  +I
Sbjct: 141 NLETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 10/123 (8%)

Query: 62  PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE 121
           P S F ++    K+++L+L D  L G +   +  L +++ + L +N+F+G IP     L 
Sbjct: 277 PPSIFSLQ----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSL------SPEIYKLQVLSESQ 175
            L+VL    N FSG +P +LG +++LT+L L  N+  G +      S  ++KL + S S 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 176 VDE 178
             E
Sbjct: 393 EGE 395

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 28 LNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS 71
          LND+  ALL  +  +  DP GAL+SW    + ++PCSW GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNP--SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 35/98 (35%), Positives = 49/98 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  E+  +  +K I L  N+ SG IP   G L  L  LD  +NN +GP+P+ LG  
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            +L  L L  N   G + P I+ LQ L    + +  LS
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 30/90 (33%), Positives = 45/90 (50%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +++ L L +  L G +  E+ S   + S+ L +N  SG IP  F E+  L  LD   N  
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
           SG +P +LG   SL  + + +N   GSL  
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++NL    + G + P + S+T ++ + L  NSF+G IPE  G+L  L +L+   N+ SG 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 137 LPNDLG 142
           +P  LG
Sbjct: 506 VPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 70  CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           CS G +  L L    LEG +   + +   ++ + L++NSFSG +P  F +L  +  LD  
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184
           +NN  G + +      SL +L L  N F G L P+ +  + L    +   Q S A
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGA 490

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 44/92 (47%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150
           P+      ++++ L  N FSG +P   G L EL  L    N  SG +P++L     L  L
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            L +N   G +     ++ VLS+  + + QLS
Sbjct: 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 73  GKVVNLNLKDL---CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           G   +L + DL    L G +   + +LT ++ + L +N   G IP   G+++ L+ +  G
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
           +NN SG +P ++G   SL  L L  N+  G +   +  L+ L
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 73  GKVVNLNLKDLC---LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           G + +LN  DL    L G +   + +L +++ + L  N  SG IP     L++L  LD  
Sbjct: 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS---PEIYKLQVL 171
            N+ SG +P  +    +L IL L +N+F G +      + +LQVL
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 98  HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           ++KS+ L NN  + I    F  L  L+VLD   NN +   P       SL  L L  N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
             G +   + SL  ++ + L +N FSG IP+  G+   L VLD   NN +G +P  L  +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
            +L  L+L +N   G +   +   + L   ++ +   S
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/95 (31%), Positives = 43/95 (45%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L +  L G +  +I S + +K + L  N   G IP     L  LE L    N   G +
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           P +LG   SL  + L  N+  G +  EI  L  L+
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  EI  LT +  + L  N+ +G IP   G L+ L+ L    N  SGP+P  +   
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVL 171
             L  L L +N   G +   + +LQ L
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNL 310

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           ++ NL+L      G +  ++ SL+ +  + L  N  SG IP+     ++L  LD  HN  
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
           SG +P        L+ L L  N   G +   +  ++ L
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 231 SSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVS----PPKLSNPAPAPAPNQTPTPTP 286
           + P  +S + PP+S        +           S    P    +  P P+P     P+P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSP 236

Query: 287 SIPIPRPSSSQSHQKSGGSSSK 308
                 P      Q    S++K
Sbjct: 237 PPGPAAPPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 73  GKVVNLNLKDLC---LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
           GK  NL + DL    L G +   + S  ++  +IL +NS  G IP+  G    L  +   
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP---EIYKLQVLS 172
            N+FSG LP++      +  L + NN+  G ++    ++  LQ+LS
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Length = 968

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 25/124 (20%), Positives = 36/124 (29%), Gaps = 22/124 (17%)

Query: 200 GVLDEDTVQRR------LLQINPFRNLKGRILGIAPTSSPPP-------SSDAIPPASVG 246
           G LDE+  Q+         +I+  + LK    G  P   PP                +  
Sbjct: 118 GELDEEVAQKIKYAKWKAARIH--KALKE---GEDPNPGPPLDEEDEDADVATTNSDNSF 172

Query: 247 SSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQ----TPTPTPSIPIPRPSSSQSHQKS 302
             +D      S     S SP   S P+P   P+     +  P PS              +
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPT 232

Query: 303 GGSS 306
             S 
Sbjct: 233 NPSP 236

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 228 APTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS 287
           +P  SP     A  P            +  +       P +L +PA AP P Q P    S
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAP---GARPAELPSPASAPTPEQQPPVARS 439

Query: 288 IPIPR-PSSSQSHQKSGGSSS 307
            P+P  P +S     + G   
Sbjct: 440 APLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 222 GRILGIAPTSSPPPSSDAIPPASVGSSDDTKANETSSDRNDSVSPPKLSNPAPAPAPNQT 281
           G  +  A    PP S   +PP S      + A   SS   + +     +   P P+P Q 
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGS-----SSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP 233

Query: 282 PTPTPSIPIP 291
             P  SIP P
Sbjct: 234 SAPPASIPAP 243

Length = 582

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 229 PTSSPPPSSDAIPPASVGSSDDT-KANETSSDRNDSVSPPKLSNPAPAPAPNQTPTPTPS 287
           P ++P PS+ A    S   S    + +   S    + +PP +S   PA  P   P+  P 
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445

Query: 288 IPIPRPSSSQSHQKSGGSSSKHIAILGGV 316
              P     +        SS   + L  +
Sbjct: 446 AVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474

Length = 614

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN03150	623	hypothetical protein; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.67
PLN03150	623	hypothetical protein; Provisional	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.09
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.01
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.82
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.25
PRK15386	426	type III secretion protein GogB; Provisional	96.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.13
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.61
PRK15386	426	type III secretion protein GogB; Provisional	95.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.42
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	95.15
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	95.03
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.4
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	94.09
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.16
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.56
PF06809	341	NPDC1: Neural proliferation differentiation contro	91.49
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	91.22
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	91.06
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	90.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.38
smart00370	26	LRR Leucine-rich repeats, outliers.	90.14
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.14
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	89.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.79
smart00370	26	LRR Leucine-rich repeats, outliers.	87.79
PF05283	186	MGC-24: Multi-glycosylated core protein 24 (MGC-24	87.11
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	84.85
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	84.82
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	84.41
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	83.32
PF15176	102	LRR19-TM: Leucine-rich repeat family 19 TM domain	82.15
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	81.12
PF03229	126	Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR	80.5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1e-21  Score=213.28  Aligned_cols=162  Identities=30%  Similarity=0.530  Sum_probs=129.5

Q ss_pred             hhccCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeeeC-CCCEEEEEccCCCCCCcCcccccCCCCcCE
Q 017764           23 CLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKS  101 (366)
Q Consensus        23 ~~~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~  101 (366)
                      ..+...++|+.+|++||+++ .++.+.+.+|+   .+.++|.|.||+|+ .++|+.|+|++|+++|.++..+..+++|++
T Consensus        22 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         22 NFSMLHAEELELLLSFKSSI-NDPLKYLSNWN---SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             HccCCCHHHHHHHHHHHHhC-CCCcccCCCCC---CCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence            34445678999999999999 46767788998   56789999999998 679999999999999988888888999999


Q ss_pred             EEccCCCCCCCCccccC-CCCCCCeeeccCCcCC----------------------CCCCcccCCCCCCcEEEccCCCCC
Q 017764          102 IILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFS----------------------GPLPNDLGINHSLTILLLDNNDFV  158 (366)
Q Consensus       102 L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~----------------------g~lP~~l~~l~~L~~L~L~~N~l~  158 (366)
                      |+|++|.++|.+|..+. .+++|++|+|++|+++                      +.+|..++++++|++|+|++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            99999998888886654 5566666655555554                      455666777778888888888888


Q ss_pred             CCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764          159 GSLSPEIYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       159 g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      +.+|..++++++|++|++++|.+++.+|..
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  207 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRE  207 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChH
Confidence            788888888888888888888888877753

>PLN03150 hypothetical protein; Provisional

Probab=99.86  E-value=8.8e-21  Score=195.83  Aligned_cols=149  Identities=31%  Similarity=0.506  Sum_probs=126.9

Q ss_pred             cCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC-----CcceeeeC--C----CCEEEEEccCCCCCCcCccccc
Q 017764           26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC-----SWFGVECS--D----GKVVNLNLKDLCLEGTLAPEIQ   94 (366)
Q Consensus        26 ~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C-----~w~Gv~C~--~----~~v~~L~L~~n~l~g~~p~~l~   94 (366)
                      ....+|..+|+.+|+.+. ++.  ..+|.   .  ++|     .|.||.|.  .    ..|+.|+|++|.+.|.+|..+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~---g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~  439 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG-LPL--RFGWN---G--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS  439 (623)
T ss_pred             ccCchHHHHHHHHHHhcC-Ccc--cCCCC---C--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence            456789999999999984 332  24797   2  345     79999995  1    2489999999999999999999


Q ss_pred             CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCC-CCCCE
Q 017764           95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKL-QVLSE  173 (366)
Q Consensus        95 ~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l-~~L~~  173 (366)
                      +|++|+.|+|++|.|+|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+|+|.+|..+..+ .++..
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988764 46777


Q ss_pred             EeccCCCCc
Q 017764          174 SQVDEGQLS  182 (366)
Q Consensus       174 L~l~~N~l~  182 (366)
                      +++.+|...
T Consensus       520 l~~~~N~~l  528 (623)
T PLN03150        520 FNFTDNAGL  528 (623)
T ss_pred             EEecCCccc
Confidence            888887643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.67  E-value=2.7e-16  Score=170.98  Aligned_cols=114  Identities=28%  Similarity=0.446  Sum_probs=76.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+.|.+|..+ .+.+|++|+|++|.+++.+|..+.++++|++|+|++|++.+.+|..+..+++|++|+|
T Consensus       452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            356667777776666666543 3466667777777776666666666666777777777776666666666666777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|.++|.+|..+..+++|+.|+|++|+++|.+|.
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            77777666666666666777777777777666664

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=2.5e-12  Score=133.27  Aligned_cols=92  Identities=27%  Similarity=0.443  Sum_probs=88.7

Q ss_pred             CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEecc
Q 017764           98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  177 (366)
Q Consensus        98 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~  177 (366)
                      .++.|+|++|.+.|.+|..+..|++|+.|+|++|+|.|.+|..++.+++|+.|+|++|+|+|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCccc
Q 017764          178 EGQLSSAAKKEQ  189 (366)
Q Consensus       178 ~N~l~g~iP~~~  189 (366)
                      +|+|+|.+|...
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            999999999654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=5.3e-14  Score=118.95  Aligned_cols=108  Identities=23%  Similarity=0.416  Sum_probs=93.0

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|.|++|.++ .+|+.+..|.+|+.|++.+|++. .+|..++.|++|+.|+++-|++. .+|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            357888999999998 78888999999999999999998 78888999999999999999998 7899999999999999


Q ss_pred             ccCCCCC-CCChhhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFV-GSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~-g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |.+|++. ..+|..|..|..|+.|+|++|.|.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence            9998886 356777777788888888888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=6.5e-13  Score=112.39  Aligned_cols=111  Identities=32%  Similarity=0.496  Sum_probs=96.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|++.+|+++ .+|.++..|+.|+.|+++.|.+. .+|..|+.++.|++|||.+|++.. .+|..|..++.|+.|.
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            46888999999998 78999999999999999999998 789999999999999999999864 5777888888888999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|.|. .+|..++++++|+.|.+.+|.+- ++|.
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence            9999988 88888999999999999888875 3443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.09  E-value=1.9e-11  Score=115.54  Aligned_cols=106  Identities=29%  Similarity=0.404  Sum_probs=69.7

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++-|+|++|-+. .+|.+++.+..|+.||++.|.|. .+|..+..+..|+.+-.++|++...-++.+.+|.+|..|||.
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            3444555544443 44555555555555555555544 444444444444444444455542223347889999999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|.+. .+|..+++|.+|++|++++|+|.
T Consensus       514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCchh-hCChhhccccceeEEEecCCccC
Confidence            99999 89999999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.01  E-value=3e-11  Score=118.86  Aligned_cols=153  Identities=18%  Similarity=0.186  Sum_probs=105.5

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc---cCCCCCCcEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLTIL  150 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~~L  150 (366)
                      ++.+|+|++|+|+..-+.+|..|..|++|+|+.|.++..--..|..+++|+.|||++|.+++.|-+.   |..|++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            5666777777766444445666666777777777766444456777888889999999888777643   6678999999


Q ss_pred             EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCc-----------------ccccccccccccCccCchhhh-ccc
Q 017764          151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK-----------------EQSCYERSIKWNGVLDEDTVQ-RRL  211 (366)
Q Consensus       151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~-----------------~~~c~~~~~~~~~~~~~~~~~-~~~  211 (366)
                      +|.+|++. .|| ..|..+.+|++|||.+|.+...-|.                 .|+|.+..+.  .++-.+..| ...
T Consensus       398 ~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~--qWl~~~~lq~sv~  474 (873)
T KOG4194|consen  398 RLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA--QWLYRRKLQSSVI  474 (873)
T ss_pred             eecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHH--HHHHhccccccee
Confidence            99999998 555 4788999999999999988754443                 2444444333  111122222 344


Q ss_pred             ccccccccccCcccCCCC
Q 017764          212 LQINPFRNLKGRILGIAP  229 (366)
Q Consensus       212 ~~c~~~~~~~g~~l~~~~  229 (366)
                      ..|..+..+.|+-+-.++
T Consensus       475 a~CayPe~Lad~~i~svd  492 (873)
T KOG4194|consen  475 AKCAYPEPLADQSIVSVD  492 (873)
T ss_pred             eeccCCcccccceeEeec
Confidence            578899888888775444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.99  E-value=3.7e-11  Score=118.19  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=81.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|+.|++...-...+.+|+.|+.|+||+|.|...-++.+....+|++|+|++|+++..-+..|..|..|+.|+|
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            36788888888887555556778888888888888888777778888888888888888888544455666677777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      ++|.++-..-..|..+++|+.|||++|.+++.|
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            777666333345566666666666666666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=4.2e-10  Score=97.63  Aligned_cols=104  Identities=23%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             CEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCccc-CCCCCCcEEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL  151 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~  151 (366)
                      ++++|+|++|.|+ .+. .++ .+.+|+.|||++|.++. +. .+..+++|++|++++|+++ .+...+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            5789999999998 443 465 58899999999999984 43 5888999999999999999 565544 3689999999


Q ss_pred             ccCCCCCCCC-hhhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |++|++...- -..+..+++|+.|++.+|+++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            9999997321 145778999999999999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.96  E-value=1.1e-10  Score=115.69  Aligned_cols=107  Identities=23%  Similarity=0.354  Sum_probs=85.5

Q ss_pred             CCEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC----------------
Q 017764           73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG----------------  135 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g----------------  135 (366)
                      .+...|+|++|+|. +||.. +.+|+.|-.||||+|.+. .+|+.+..|.+|++|+|++|.+..                
T Consensus       126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH  203 (1255)
T ss_pred             cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence            35678888888887 66665 678888888888888887 677777788888888888875421                


Q ss_pred             ---------CCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          136 ---------PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       136 ---------~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                               .+|.++..+.+|..+||+.|++. .+|+.+.++.+|+.|+|++|+++
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence                     36667777788888899999988 88999999999999999999886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.92  E-value=1.6e-10  Score=114.64  Aligned_cols=107  Identities=22%  Similarity=0.346  Sum_probs=87.6

Q ss_pred             CCEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L  150 (366)
                      .+++++++..|+|.. -+|+++..|..|++||||+|+++ ..|..+..-+++-+|+|++|+|. .||.. +.+|+.|-+|
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            356777778887753 47888888888999999999888 68888888888888999999888 78865 4578888888


Q ss_pred             EccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      ||++|++. .+|+.+..|..|+.|+|++|.+.
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            99998888 78888888888888888888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.87  E-value=1.1e-10  Score=110.56  Aligned_cols=111  Identities=27%  Similarity=0.363  Sum_probs=77.3

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccC-CCCCCcEEEccC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLDN  154 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~L~~  154 (366)
                      ..||.-.|-++ .+|++++.|.+|..|+|..|.+. .+| +|.++..|++|.++.|++. .+|.+.. ++.+|.+|||.+
T Consensus       186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence            34444444443 55666666666666666666665 344 5666666666666666666 5666555 788899999999


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC  191 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c  191 (366)
                      |+++ .+|.++..+++|.+||+++|.+++--+...+.
T Consensus       262 Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  262 NKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             cccc-cCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence            9999 89999999999999999999998765544333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.82  E-value=6.6e-10  Score=114.57  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             CCEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.|. .+|+. +.+|..|++|+||+|.++ .+|..+.++..|++|...+|++. .+| ++..++.|+++|
T Consensus       383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            47899999999987 56664 888999999999999998 78899999999999999999998 788 888999999999


Q ss_pred             ccCCCCCCC-ChhhhhCCCCCCEEeccCCC
Q 017764          152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       152 L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~  180 (366)
                      |+.|+++.. +|.. ..-++|++|||++|.
T Consensus       459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhh-CCCcccceeeccCCc
Confidence            999999743 3433 233899999999997

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.80  E-value=5.7e-09  Score=69.02  Aligned_cols=41  Identities=41%  Similarity=0.981  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHhccCCCCCCCCCCCCCCC-CCCCCCcceeeeC
Q 017764           29 NDEGLALLRLRERVVRDPYGALTSWRSCDT-ENNPCSWFGVECS   71 (366)
Q Consensus        29 ~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~-~~~~C~w~Gv~C~   71 (366)
                      ++|+++|++||+++..++.+.+.+|+  .. ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            68999999999999767778899998  23 2799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.78  E-value=3.3e-09  Score=100.42  Aligned_cols=136  Identities=14%  Similarity=0.104  Sum_probs=110.2

Q ss_pred             CCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhh
Q 017764           86 EGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE  164 (366)
Q Consensus        86 ~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~  164 (366)
                      .+..|. +|..|++|++|+|++|.+++.-+..|.++.++++|.|..|++...--..|.++..|+.|+|.+|+++-.-|..
T Consensus       262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            334444 4899999999999999999999999999999999999999998544456889999999999999999888999


Q ss_pred             hhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCCCC
Q 017764          165 IYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAPTS  231 (366)
Q Consensus       165 l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~~~  231 (366)
                      |..+.+|..|.|-.|.|.      |+|.+..+. |..   .+. ......|..+..+++-++.++.+.
T Consensus       342 F~~~~~l~~l~l~~Np~~------CnC~l~wl~~Wlr---~~~-~~~~~~Cq~p~~~~~~~~~dv~~~  399 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFN------CNCRLAWLGEWLR---KKS-VVGNPRCQSPGFVRQIPISDVAFG  399 (498)
T ss_pred             ccccceeeeeehccCccc------CccchHHHHHHHh---hCC-CCCCCCCCCCchhccccchhcccc
Confidence            999999999999999987      777666554 422   111 334456888888888777766643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.76  E-value=1.1e-08  Score=107.14  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             CCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|+.|++++|+|+ .+|..   ..+|+.|+|++|+|+ .+|..+.++.+|+.|+|++|+|+|.++.
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            34555555555555 34432   235666777777777 6788888888888888888888877664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=6.2e-09  Score=74.30  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=16.7

Q ss_pred             cCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764          141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       141 l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~  180 (366)
                      |..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3344444444444444443323334444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=4.8e-09  Score=74.90  Aligned_cols=61  Identities=33%  Similarity=0.532  Sum_probs=55.0

Q ss_pred             CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCC
Q 017764           97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF  157 (366)
Q Consensus        97 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l  157 (366)
                      ++|++|++++|.++...+..|..+++|++|++++|.++..-+..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4799999999999966667899999999999999999966667899999999999999975

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=3e-09  Score=97.58  Aligned_cols=102  Identities=19%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      +++|||++|.++ .+..++.-++.++.|+++.|.+.. + ..+..|.+|+.|||++|.++ .+-..-..+.+++.|.|++
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            567777777776 666666667777777777777762 2 23666777777777777776 3333334555666666666


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |.+. .+ ..+.++-+|..||+++|++.
T Consensus       362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  362 NKIE-TL-SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhHh-hh-hhhHhhhhheeccccccchh
Confidence            6654 22 34556666666666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=1.6e-09  Score=106.72  Aligned_cols=117  Identities=23%  Similarity=0.312  Sum_probs=92.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      -+..|.+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++..| .|..||++
T Consensus       144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS  219 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS  219 (722)
T ss_pred             cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence            3667777888876 67778887778888888888887 67777888888888888888888 678887744 47889999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK  197 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~  197 (366)
                      .|+++ .||-.|.+|+.|++|.|.+|.|..  |...-|......
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVH  260 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVH  260 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCCC--ChHHHHhcccee
Confidence            99999 899999999999999999999974  334445544433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.66  E-value=1.5e-09  Score=111.92  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=96.9

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .++.|.|.+|.|+...-+.+.++.+|++|+|++|++. .+| ..+.++..|+.|+||+|.++ .+|..+.++..|++|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            5788999999999887778999999999999999998 566 46788999999999999999 89999999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      .+|++. .+| ++..++.|+.+|++.|+|+-
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            999999 888 89999999999999999973

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.65  E-value=4.6e-09  Score=103.48  Aligned_cols=106  Identities=28%  Similarity=0.383  Sum_probs=73.3

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      .++.|+|+.|.++ .+|..+..|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|.+.
T Consensus       122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence            4566677777776 5666666665 777777777776 56777777777777777777776 677777777777777777


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      .|++. .+|+++..| .|..||++.|+++ .||
T Consensus       198 Rn~l~-~lp~El~~L-pLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  198 RNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             hhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence            77776 666666643 3667777777765 444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.57  E-value=1.2e-07  Score=99.65  Aligned_cols=97  Identities=24%  Similarity=0.364  Sum_probs=54.2

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +.+.|+|++++++ .+|..+.  ++|+.|+|++|.|+ .+|..+.  .+|++|++++|+|+ .+|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4567777777776 4565443  45677777777766 4554443  36666666666666 4554332  245555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++. .+|..+.  .+|+.|++++|+|+
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC
Confidence            55555 4444432  24555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.55  E-value=7.6e-09  Score=97.98  Aligned_cols=108  Identities=23%  Similarity=0.294  Sum_probs=93.9

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC-CcCCCCCCc-ccCCCCCCcEEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH-NNFSGPLPN-DLGINHSLTILL  151 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~-N~l~g~lP~-~l~~l~~L~~L~  151 (366)
                      ..+.|+|..|.|+..-+..|..+++|+.|||++|+|+.+-|+.|.+|.+|..|.+-+ |+|+ .+|. .|++|.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            568999999999955555699999999999999999999999999999998887766 9998 6775 588999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +.-|++.-.....|..|++|..|.+.+|.+.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            9999998666778889999999999888775

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.53  E-value=2.6e-08  Score=94.42  Aligned_cols=110  Identities=25%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCC---cCEEEccCCCCCC----CCccccCCC-CCCCeeeccCCcCCCC----CCcc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPND  140 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~---L~~L~Ls~N~l~g----~~P~~l~~l-~~L~~L~Ls~N~l~g~----lP~~  140 (366)
                      .+++.|+|++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|+|++|.+++.    +...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            35666666666665444444444433   6666666665552    122233344 5556666666655532    1222


Q ss_pred             cCCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764          141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       141 l~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +..+.+|++|+|++|.+++.    ++..+..+++|++|++++|.++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            33444555555555555532    2223334445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.53  E-value=2.7e-08  Score=94.24  Aligned_cols=110  Identities=22%  Similarity=0.394  Sum_probs=77.5

Q ss_pred             CEEEEEccCCCCCC----cCcccccCC-CCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcc
Q 017764           74 KVVNLNLKDLCLEG----TLAPEIQSL-THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPND  140 (366)
Q Consensus        74 ~v~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~  140 (366)
                      +++.|+|++|.+++    .+...+..+ ++|+.|+|++|.+++.    +...+..+.+|++|++++|.+++.    ++..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            38888888888763    233445566 7888888888888743    334566677888888888888742    2334


Q ss_pred             cCCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764          141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       141 l~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +..+++|++|+|++|.+++.    +...+..+++|++|++++|.+++
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            45567888888888887643    23345667788888888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.53  E-value=1.1e-08  Score=93.93  Aligned_cols=115  Identities=18%  Similarity=0.154  Sum_probs=92.7

Q ss_pred             cceeeeC------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC
Q 017764           65 WFGVECS------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP  138 (366)
Q Consensus        65 w~Gv~C~------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP  138 (366)
                      ++-|+|.      ...|+.|+++.|+|. .+. .+..|.+|+.|||++|.++. +-..-..|.+.+.|.|+.|.+..  -
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~--L  367 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET--L  367 (490)
T ss_pred             ccchhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh--h
Confidence            4556665      247899999999997 444 48889999999999999983 43344578899999999999872  2


Q ss_pred             cccCCCCCCcEEEccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcccC
Q 017764          139 NDLGINHSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       139 ~~l~~l~~L~~L~L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      ..++.+-+|..||+++|++. .+-  ..+++++-|++|.|.+|++.+..
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence            46788899999999999987 443  26899999999999999998654

>PLN03210 Resistant to P

Probab=98.52  E-value=2.9e-07  Score=102.18  Aligned_cols=104  Identities=23%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|.+|.+. .++..+..+++|++|+|+++.....+|. +..+++|+.|+|++|.....+|..+.++.+|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4455555555554 3444455555666666655543334442 5555566666665554444555555556666666665


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~  180 (366)
                      +|...+.+|..+ ++++|+.|++++|.
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            554334555433 44555555555543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.52  E-value=3.3e-07  Score=96.47  Aligned_cols=102  Identities=21%  Similarity=0.327  Sum_probs=85.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|+|++|+|+ .+|..+.  .+|++|+|++|.|+ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+|
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            36899999999999 6777654  58999999999998 5776554  47999999999999 7887764  58999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|+++ .+|..+.  .+|+.|++++|+|++ +|.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~  300 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA  300 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence            999999 6787664  589999999999985 443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.51  E-value=9.3e-08  Score=83.03  Aligned_cols=87  Identities=31%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             cccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhh-hCCC
Q 017764           92 EIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI-YKLQ  169 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l-~~l~  169 (366)
                      .+.+...+++|+|++|.|+- | ..++ .+.+|+.|+|++|.++ .+. .+..+..|+.|+|++|.++ .+.+.+ ..++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            35566679999999999983 4 3566 5889999999999999 454 6788999999999999999 565555 4689


Q ss_pred             CCCEEeccCCCCcc
Q 017764          170 VLSESQVDEGQLSS  183 (366)
Q Consensus       170 ~L~~L~l~~N~l~g  183 (366)
                      +|++|++++|++..
T Consensus        89 ~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   89 NLQELYLSNNKISD  102 (175)
T ss_dssp             T--EEE-TTS---S
T ss_pred             cCCEEECcCCcCCC
Confidence            99999999999973

>PLN03210 Resistant to P

Probab=98.46  E-value=7.3e-07  Score=99.00  Aligned_cols=112  Identities=15%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|++.++.+. .+|..+ .+.+|++|+|++|.+. .++..+..+++|+.|+|+++.....+| .+..+++|+.|+|+
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence            4677777777765 677666 5689999999999988 678888999999999999887666787 48889999999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ  189 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~  189 (366)
                      +|.....+|..+.++.+|+.|++++|..-+.+|...
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            988777999999999999999999987667777543

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.33  E-value=1.6e-06  Score=91.27  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS  134 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~  134 (366)
                      +++.|+|.+|+|+ .+|.   .+++|++|+|++|+|+ .+|..   ..+|+.|+|++|.++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence            5677777777776 3553   2467777777777777 34532   234555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.30  E-value=3.3e-07  Score=89.95  Aligned_cols=103  Identities=28%  Similarity=0.423  Sum_probs=80.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCC-CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+.++.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            5778888888877 6677777774 8888888888887 56666778888888888888888 67766667788888888


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~  180 (366)
                      ++|+++ .+|..+..+..|+.|++++|+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            888888 777766666678888888884

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=6.9e-08  Score=97.68  Aligned_cols=102  Identities=24%  Similarity=0.299  Sum_probs=53.1

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEEEcc
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLLD  153 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~L~  153 (366)
                      +...+.+.|.|. .+..++.-+++|+.|||++|++...  ..+..|.+|++|||++|.+. .+|.- ...+ .|+.|.|+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            344455555554 4444555555666666666666532  24555566666666666665 44421 1122 25566666


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +|.++ .+ ..+.+|.+|+.||+++|-+.+
T Consensus       241 nN~l~-tL-~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  241 NNALT-TL-RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ccHHH-hh-hhHHhhhhhhccchhHhhhhc
Confidence            66555 22 234555666666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=1e-07  Score=78.26  Aligned_cols=87  Identities=17%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             CEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      +++.++|++|.+. .+|+.|. .++.++.|+|++|.++ .+|.++..++.|+.|++++|.|. ..|.-+..|.+|-.||.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            4455555555554 3333332 2334555555555555 34555555555555555555555 34444444555555555


Q ss_pred             cCCCCCCCChhh
Q 017764          153 DNNDFVGSLSPE  164 (366)
Q Consensus       153 ~~N~l~g~iP~~  164 (366)
                      .+|.+. .||..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            555544 44443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=1.2e-06  Score=93.80  Aligned_cols=106  Identities=27%  Similarity=0.338  Sum_probs=90.2

Q ss_pred             CCEEEEEccCCC--CCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764           73 GKVVNLNLKDLC--LEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI  149 (366)
Q Consensus        73 ~~v~~L~L~~n~--l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~  149 (366)
                      ..+++|-+.+|.  +. .++.. |..++.|++|||++|.=-+.+|..+++|-+|++|+|++..+. .+|..+.+|..|.+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            368888888886  44 34443 777999999999998877899999999999999999999999 89999999999999


Q ss_pred             EEccCCCCCCCChhhhhCCCCCCEEeccCCC
Q 017764          150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       150 L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~  180 (366)
                      ||+..+.....+|..+..|.+|++|.+....
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            9999988776777777779999999987655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=2.7e-07  Score=75.81  Aligned_cols=104  Identities=22%  Similarity=0.244  Sum_probs=86.1

Q ss_pred             EEEEEccCCCCCCcCccc---ccCCCCcCEEEccCCCCCCCCccccCC-CCCCCeeeccCCcCCCCCCcccCCCCCCcEE
Q 017764           75 VVNLNLKDLCLEGTLAPE---IQSLTHIKSIILRNNSFSGIIPEGFGE-LEELEVLDFGHNNFSGPLPNDLGINHSLTIL  150 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~---l~~L~~L~~L~Ls~N~l~g~~P~~l~~-l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L  150 (366)
                      +..++|+++.|- .++..   +....+|+..+|++|.|. .+|..|.. .+.++.|+|++|.++ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            456777777764 45544   455567888899999998 56766654 458999999999999 899999999999999


Q ss_pred             EccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +++.|.|. ..|.-+..|.+|..|+..+|...
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            99999999 77888888999999999998764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.04  E-value=3.1e-06  Score=83.07  Aligned_cols=112  Identities=29%  Similarity=0.374  Sum_probs=63.9

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      ++.|++++|.+. .+|..+..+..|++|++++|.+. .++..+..+.++..+.+.+|++. .++..++.+.+|+.|++++
T Consensus       188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence            444445555444 34443333444555555555322 23344455555555555555555 3355666677777777777


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC  191 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c  191 (366)
                      |.++ .++. ++.+.+|+.|++++|.+....|....+
T Consensus       265 n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         265 NQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence            7777 4544 777777777777777777666654333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=7.6e-06  Score=54.22  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=17.6

Q ss_pred             CCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          146 SLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       146 ~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++|+|++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 44444555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=6.5e-06  Score=54.55  Aligned_cols=36  Identities=36%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCC
Q 017764          122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV  158 (366)
Q Consensus       122 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~  158 (366)
                      +|++|++++|+|+ .+|..+.+|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 34444555555555555555544

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.81  E-value=6.2e-07  Score=90.97  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=82.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccc-cCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..++.|||+.|+++.. . .+..|++|++|||++|.++ .+|.. ...+ +|+.|.|++|.++. + ..+.+|.+|+.||
T Consensus       187 ~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-h-hhHHhhhhhhccc
Confidence            3688999999999843 3 6888999999999999998 55542 2233 49999999999983 2 3677899999999


Q ss_pred             ccCCCCCCCCh-hhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSLS-PEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |++|-+.+.-- .-++.|..|+.|+|.+|.+-
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99998875321 23567889999999999885

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.76  E-value=9.9e-06  Score=80.26  Aligned_cols=104  Identities=23%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|+|.+|.|.+ +...+..+.+|++|+|++|.|+...  .+..+..|+.|++++|.++. + ..+..+..|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhcccC
Confidence            467788888888874 3333677788888888888887442  35667778888888888872 3 34555778888888


Q ss_pred             cCCCCCCCChhh-hhCCCCCCEEeccCCCCc
Q 017764          153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       153 ~~N~l~g~iP~~-l~~l~~L~~L~l~~N~l~  182 (366)
                      ++|.+. .+... ...+.+|+.+++++|.+.
T Consensus       170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  170 SYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            888887 33332 467778888888888765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.73  E-value=8.1e-06  Score=80.91  Aligned_cols=107  Identities=19%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      .+..+++..|.+.. +-..+..+++|+.|++.+|.|.. +...+..+.+|++|+|++|.|+..  ..+..+..|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence            45566677887763 34458889999999999999984 443377899999999999999843  256677789999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|.++ .+ ..+..+.+|+.+++++|++...-+
T Consensus       149 ~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  149 GNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cCcch-hc-cCCccchhhhcccCCcchhhhhhh
Confidence            99998 43 345668999999999999985544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.58  E-value=4.9e-05  Score=81.57  Aligned_cols=110  Identities=23%  Similarity=0.259  Sum_probs=87.7

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC--CCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS--FSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~--l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .++.+.+-+|.+. .++.... .+.|++|-+..|.  +.-.....|..|+.|++|||++|.=-+.+|..++.|-+|++|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4566666677665 3333332 3479999999986  4433334578899999999999888789999999999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++..+. .+|..+.+|++|.+|++..+.....+|
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence            9999999 999999999999999999887655553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00013  Score=63.82  Aligned_cols=80  Identities=25%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEEEcc
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTILLLD  153 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L~L~  153 (366)
                      ..+||++|.+.. + ..|..++.|.+|.|.+|.|+..-|.--.-+++|+.|.|.+|++. .+-  ..+..++.|++|.+-
T Consensus        45 d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   45 DAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeec
Confidence            345555555431 1 23444455555555555555333322223344555555555554 121  123344455555555


Q ss_pred             CCCCC
Q 017764          154 NNDFV  158 (366)
Q Consensus       154 ~N~l~  158 (366)
                      +|..+
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            55443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=4.4e-05  Score=73.76  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             CEEEEEccCCCCCCc-CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEE
Q 017764           74 KVVNLNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTIL  150 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L  150 (366)
                      +++.|.|++++|+.. +-..+..+++|+.|+|..|..-+..-.....+..|+.|||++|++- ..+  ...+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            444444444444411 1112233444444454444321111122223444555555555554 222  223444555555


Q ss_pred             EccCCCCCCC-Chhh-----hhCCCCCCEEeccCCCC
Q 017764          151 LLDNNDFVGS-LSPE-----IYKLQVLSESQVDEGQL  181 (366)
Q Consensus       151 ~L~~N~l~g~-iP~~-----l~~l~~L~~L~l~~N~l  181 (366)
                      +++.+.+... +|+.     ...+++|++|++..|++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            5555544321 1111     23345555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=6.5e-05  Score=72.57  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCc--cccCCCCCCCeeeccCCcCCCC-CCcc-----cCCC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP--EGFGELEELEVLDFGHNNFSGP-LPND-----LGIN  144 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P--~~l~~l~~L~~L~Ls~N~l~g~-lP~~-----l~~l  144 (366)
                      ..+..|+|..|..-+..-.+...+..|+.|||++|++- .++  ...+.++.|+.|+++.+.+... +|+.     ...+
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            46889999999533333344556789999999999987 344  4577899999999999988732 2322     3467


Q ss_pred             CCCcEEEccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcc
Q 017764          145 HSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       145 ~~L~~L~L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|++|++..|++. ..+  ..+..+.+|++|.+..|+|+-
T Consensus       301 ~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  301 PKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            89999999999985 333  356778899999999999873

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.33  E-value=0.00033  Score=61.44  Aligned_cols=101  Identities=20%  Similarity=0.312  Sum_probs=74.2

Q ss_pred             EEEEccCCCCCCcCcccccC-CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccC-CCCCCcEEEcc
Q 017764           76 VNLNLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLD  153 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~L~  153 (366)
                      +.++|.+..+. .+- .++. +.....+||++|.+.. + ..|..+..|.+|.|++|+|+. |-..+. -+++|+.|.|.
T Consensus        22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-chh-hccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEEec
Confidence            45777776654 111 1222 3567889999999963 2 457789999999999999995 444554 45789999999


Q ss_pred             CCCCCCCCh--hhhhCCCCCCEEeccCCCCc
Q 017764          154 NNDFVGSLS--PEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++. .+-  .-+..+++|++|.+-+|+.+
T Consensus        97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             Ccchh-hhhhcchhccCCccceeeecCCchh
Confidence            99987 332  24678899999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.85  E-value=0.00086  Score=60.97  Aligned_cols=64  Identities=23%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             ccCCCCcCEEEccCC--CCCCCCccccCCCCCCCeeeccCCcCCCCCCcc---cCCCCCCcEEEccCCCCC
Q 017764           93 IQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLTILLLDNNDFV  158 (366)
Q Consensus        93 l~~L~~L~~L~Ls~N--~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~~L~L~~N~l~  158 (366)
                      +..|++|++|+++.|  .+++.++.-.-.+++|++|+|+.|++.-  +..   +..+.+|..||+.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            444556666666666  3333344333444666666666666551  222   233444555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.55  E-value=0.0012  Score=69.21  Aligned_cols=107  Identities=15%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             CEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEEE
Q 017764           74 KVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL  151 (366)
Q Consensus        74 ~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~  151 (366)
                      .+++|.+.+-.+.. .+-....++++|..||+|+.+++..  ..+++|++|++|.+.+=.|.. ..-..+.+|++|++||
T Consensus       149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            45555555554432 1222344566666666666666532  456666666666665544441 1112455666677777


Q ss_pred             ccCCCCCCCC--hh----hhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSL--SP----EIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~i--P~----~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|.......-  ..    .-..|++|+.||.++..++
T Consensus       227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            7665544211  11    1134666777776666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0014  Score=59.64  Aligned_cols=91  Identities=18%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC--cCCCCCCcccCCCCCCcEEEccCCCCCCCChh---
Q 017764           89 LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN--NFSGPLPNDLGINHSLTILLLDNNDFVGSLSP---  163 (366)
Q Consensus        89 ~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N--~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~---  163 (366)
                      +....-.+..|+.|.+.+-.++..  ..+..|++|+.|.++.|  +.++.++.-...+++|++|+|++|++. . +.   
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc
Confidence            333344455666666666666521  34667899999999999  666666655667799999999999987 2 33   


Q ss_pred             hhhCCCCCCEEeccCCCCcc
Q 017764          164 EIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       164 ~l~~l~~L~~L~l~~N~l~g  183 (366)
                      .+..+.+|..|++.+|.-+.
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcchhhhhcccCCccc
Confidence            35677889999999987764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00013  Score=66.80  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcEEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL  151 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~  151 (366)
                      +|..|++-|++|+. |. -..+|+.|++|.|+-|.++..-  .+..+++|++|+|..|.|. .+-+  -+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            45666666666653 21 2356777888888888877432  3667778888888888776 3332  256778888888


Q ss_pred             ccCCCCCCCChh-----hhhCCCCCCEEe
Q 017764          152 LDNNDFVGSLSP-----EIYKLQVLSESQ  175 (366)
Q Consensus       152 L~~N~l~g~iP~-----~l~~l~~L~~L~  175 (366)
                      |..|.-.|.-+.     .+.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            888887776654     245677777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.0011  Score=61.45  Aligned_cols=82  Identities=22%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             CEEEEEccCCCCCCc--CcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEE
Q 017764           74 KVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTIL  150 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L  150 (366)
                      +|..|||.+|.|+..  +..-+.+|++|++|+|+.|.+...|-..-..+.+|++|.|.+..+...-- ..+..++.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            566666666666532  33334566666666666666654432221345566666666655543221 223344555555


Q ss_pred             EccCC
Q 017764          151 LLDNN  155 (366)
Q Consensus       151 ~L~~N  155 (366)
                      +++.|
T Consensus       152 HmS~N  156 (418)
T KOG2982|consen  152 HMSDN  156 (418)
T ss_pred             hhccc
Confidence            55555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.28  E-value=0.001  Score=62.77  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             CEEEEEccCCCCCC----cCcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCCcc----c
Q 017764           74 KVVNLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPND----L  141 (366)
Q Consensus        74 ~v~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~----l  141 (366)
                      .+..+.+..|.+.-    .+-..+..+++|++|||..|.|+-.    +-..+..+++|+.|+++++.+...=-..    +
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            46667777776641    1223467788888888888888632    3345667778888888888776322111    1


Q ss_pred             -CCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764          142 -GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       142 -~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                       ...++|++|.|.+|.++..    +-..+...+.|..|+|++|.|.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             2357888888888887632    2224556788888888888883

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.25  E-value=0.0017  Score=68.25  Aligned_cols=108  Identities=17%  Similarity=0.274  Sum_probs=80.1

Q ss_pred             CCEEEEEccCCCCCC-cCcccc-cCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764           73 GKVVNLNLKDLCLEG-TLAPEI-QSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI  149 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g-~~p~~l-~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~  149 (366)
                      .+++.|++++..... .-+..+ ..|++|+.|.+.+=.+.. .+-....++++|..||+|+.+++ .+ ..+++|.+|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            368888888865431 112223 347899999999877642 23345568899999999999998 34 67889999999


Q ss_pred             EEccCCCCCC-CChhhhhCCCCCCEEeccCCCCc
Q 017764          150 LLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       150 L~L~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |.+.+=.|.. ..-..+.+|++|++||+|.....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9998877762 22347889999999999987765

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.22  E-value=0.012  Score=57.68  Aligned_cols=96  Identities=22%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCC-cCCCCCCcccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHN-NFSGPLPNDLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N-~l~g~lP~~l~~l~~L~~L  150 (366)
                      ..++.|+++++.|. .+| .+  ..+|+.|++++ +.++ .+|..+  ..+|++|++++| .+. .+|.      +|+.|
T Consensus        52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            35678888888776 455 22  24688888876 3443 556544  257888888877 443 4554      35555


Q ss_pred             EccCCCC--CCCChhhhhCC------------------CCCCEEeccCCCCc
Q 017764          151 LLDNNDF--VGSLSPEIYKL------------------QVLSESQVDEGQLS  182 (366)
Q Consensus       151 ~L~~N~l--~g~iP~~l~~l------------------~~L~~L~l~~N~l~  182 (366)
                      +|..|..  -+.+|..+..|                  .+|++|++++|...
T Consensus       118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            5655543  13455544333                  36777777776643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.22  E-value=0.0031  Score=59.61  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=74.1

Q ss_pred             CCEEEEEccCCCCCCcCcc----cccCCCCcCEEEccCCCCCCC-------------CccccCCCCCCCeeeccCCcCCC
Q 017764           73 GKVVNLNLKDLCLEGTLAP----EIQSLTHIKSIILRNNSFSGI-------------IPEGFGELEELEVLDFGHNNFSG  135 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~-------------~P~~l~~l~~L~~L~Ls~N~l~g  135 (366)
                      ++++.||||+|.|.-.-+.    -+.....|++|.|.||.+.-.             .-.-+..-+.|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4899999999988643333    355678899999999987511             11223455678888888888863


Q ss_pred             CCC-----cccCCCCCCcEEEccCCCCC--CC--ChhhhhCCCCCCEEeccCCCCc
Q 017764          136 PLP-----NDLGINHSLTILLLDNNDFV--GS--LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       136 ~lP-----~~l~~l~~L~~L~L~~N~l~--g~--iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                       -+     ..+...+.|+.+.+..|.+.  |.  +-..+..+++|+.|||.+|-|+
T Consensus       172 -~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  172 -GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             -ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence             22     22445567888888888764  11  1235677888888888888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.0014  Score=60.73  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             CCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCC-CChhhhhCCCCC
Q 017764           95 SLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVL  171 (366)
Q Consensus        95 ~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g-~iP~~l~~l~~L  171 (366)
                      ..++++.|||.+|.++.  .+-.-+.+|+.|++|+|+.|.+...|-..-..+.+|++|.|.+..+.- ..-..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35789999999999983  233445689999999999999985443222456789999999888753 344567788999


Q ss_pred             CEEeccCCCCc
Q 017764          172 SESQVDEGQLS  182 (366)
Q Consensus       172 ~~L~l~~N~l~  182 (366)
                      +.|.++.|.+.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            99999999543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.11  E-value=0.00015  Score=64.90  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=43.2

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|||+.|.+. .+-..+..++.|..||++.|.+. .+|..++++..+..+++..|.++ ..|.+++.+++++++++.
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4555666555554 23334444555555555555554 44555555555555555555555 455555555555555555


Q ss_pred             CCCCC
Q 017764          154 NNDFV  158 (366)
Q Consensus       154 ~N~l~  158 (366)
                      .|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            55443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.71  E-value=0.0002  Score=64.14  Aligned_cols=89  Identities=18%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCC
Q 017764           91 PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV  170 (366)
Q Consensus        91 ~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~  170 (366)
                      .++..+...+.||++.|++. .+-..|.-++.|..||++.|++. .+|.+++.+..+..+++..|+++ ..|.+++.++.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            35777889999999999986 45567778899999999999998 79999999999999999999998 88999999999


Q ss_pred             CCEEeccCCCCc
Q 017764          171 LSESQVDEGQLS  182 (366)
Q Consensus       171 L~~L~l~~N~l~  182 (366)
                      ++++++.+|.|.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.66  E-value=0.0036  Score=34.73  Aligned_cols=18  Identities=28%  Similarity=0.429  Sum_probs=8.5

Q ss_pred             CcEEEccCCCCCCCChhhh
Q 017764          147 LTILLLDNNDFVGSLSPEI  165 (366)
Q Consensus       147 L~~L~L~~N~l~g~iP~~l  165 (366)
                      |++|||++|+|+ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.61  E-value=0.0048  Score=34.23  Aligned_cols=18  Identities=28%  Similarity=0.573  Sum_probs=8.3

Q ss_pred             cCEEEccCCCCCCCCcccc
Q 017764           99 IKSIILRNNSFSGIIPEGF  117 (366)
Q Consensus        99 L~~L~Ls~N~l~g~~P~~l  117 (366)
                      |++|||++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.55  E-value=0.027  Score=55.33  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCC-CCCCCCccccCCCCCCCeeeccCCcC--CCCCCcccCCC----
Q 017764           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNF--SGPLPNDLGIN----  144 (366)
Q Consensus        73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~~L~Ls~N~l--~g~lP~~l~~l----  144 (366)
                      .+|+.|++++ +.++ .+|..+.  .+|++|++++| .+. .+|.      +|+.|++..|.+  -+.+|..+..|    
T Consensus        72 ~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~  141 (426)
T PRK15386         72 NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS  141 (426)
T ss_pred             CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence            4688888887 3443 5555442  57888888887 444 4554      355555555442  12455444322    


Q ss_pred             --------------CCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCC
Q 017764          145 --------------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       145 --------------~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N  179 (366)
                                    .+|++|++++|... .+|..+-  .+|+.|+++.|
T Consensus       142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        142 YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence                          37888999888765 4444332  47888888776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.42  E-value=0.029  Score=51.72  Aligned_cols=109  Identities=18%  Similarity=0.264  Sum_probs=75.4

Q ss_pred             CCEEEEEccCCCCCCcCccc----ccCCCCcCEEEccCCCCCCC----Ccc---------ccCCCCCCCeeeccCCcCCC
Q 017764           73 GKVVNLNLKDLCLEGTLAPE----IQSLTHIKSIILRNNSFSGI----IPE---------GFGELEELEVLDFGHNNFSG  135 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~g~----~P~---------~l~~l~~L~~L~Ls~N~l~g  135 (366)
                      .+++.++|++|.+.-..|+.    +..-+.|.+|.|++|.+.-.    |-.         -..+-+.|++++...|+|. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            57889999999988777664    44567899999999987421    111         1234567889999999887 


Q ss_pred             CCCcc-----cCCCCCCcEEEccCCCCCCC-----ChhhhhCCCCCCEEeccCCCCc
Q 017764          136 PLPND-----LGINHSLTILLLDNNDFVGS-----LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       136 ~lP~~-----l~~l~~L~~L~L~~N~l~g~-----iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      .-+..     +..-..|+.+.+..|.+.-.     +-..+..+.+|+.|||.+|-|+
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            33322     22235788888999877611     0113456789999999999887

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=95.15  E-value=0.084  Score=54.70  Aligned_cols=8  Identities=50%  Similarity=0.422  Sum_probs=3.0

Q ss_pred             cEEEccCC
Q 017764          148 TILLLDNN  155 (366)
Q Consensus       148 ~~L~L~~N  155 (366)
                      |+|-|-+|
T Consensus       409 Qhlllirn  416 (1102)
T KOG1924|consen  409 QHLLLIRN  416 (1102)
T ss_pred             HHHHHHhh
Confidence            33333333

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=95.03  E-value=0.027  Score=47.09  Aligned_cols=15  Identities=47%  Similarity=0.538  Sum_probs=6.7

Q ss_pred             CCCceEEEehhhHHH
Q 017764          306 SSKHIAILGGVIGGA  320 (366)
Q Consensus       306 ~~~~~~i~~~vv~g~  320 (366)
                      +.+...|++|||+|+
T Consensus        44 S~knknIVIGvVVGV   58 (154)
T PF04478_consen   44 SSKNKNIVIGVVVGV   58 (154)
T ss_pred             CcCCccEEEEEEecc
Confidence            333444445555443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.40  E-value=0.043  Score=50.59  Aligned_cols=107  Identities=16%  Similarity=0.275  Sum_probs=59.9

Q ss_pred             CEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCCC----Cc-------cccCCCCCCCeeeccCCcCCCCCC
Q 017764           74 KVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IP-------EGFGELEELEVLDFGHNNFSGPLP  138 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P-------~~l~~l~~L~~L~Ls~N~l~g~lP  138 (366)
                      .++.++|++|-+...    +-..+.+-.+|+..+++.-.. |.    ++       ..+-.+++|+..+||+|-|.-..|
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            567778888776532    233445556666666654322 22    11       234456777777777777765555


Q ss_pred             cc----cCCCCCCcEEEccCCCCCCCChh--------------hhhCCCCCCEEeccCCCCc
Q 017764          139 ND----LGINHSLTILLLDNNDFVGSLSP--------------EIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       139 ~~----l~~l~~L~~L~L~~N~l~g~iP~--------------~l~~l~~L~~L~l~~N~l~  182 (366)
                      ..    +..-+.|.+|.|++|.+- .+-.              ...+-+.|+.+....|+|.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            43    334466777777777653 2211              1223456677777777664

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=94.09  E-value=0.026  Score=35.39  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             ceEEEehhhHHHHHHHHHHHHHhhhccccc
Q 017764          309 HIAILGGVIGGAILLVATVGIYLCRCNKVT  338 (366)
Q Consensus       309 ~~~i~~~vv~g~~v~~~~~~~~~~~~~k~~  338 (366)
                      ..+|+++|+.|.+++++.++.+.|+++|-.
T Consensus         5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            346777777776666666666666555543

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>TIGR00864 PCC polycystin cation channel protein

Probab=93.45  E-value=0.049  Score=63.87  Aligned_cols=73  Identities=18%  Similarity=0.086  Sum_probs=52.2

Q ss_pred             EccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCC
Q 017764          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      ||++|+|+-.-+..|..+.+|+.|+|++|.|.      |+|.+..+. |.............+.|..+..++|+.+...+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~------CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~   74 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------CDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIP   74 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccc------cccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCC
Confidence            68899998444456788999999999999887      999887665 53222111122345789999999999885443

Note: this model has been restricted to the amino half because for technical reasons.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.25  E-value=0.2  Score=40.40  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.+.+.. .+...-...|.++++|+.+++.++ +...--..|.++.+|+.+.+.+ .+...-...|..+.+|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            577777764 455333334777778888888775 5533345677777788888865 3331222345667888888886


Q ss_pred             CCCCCCCChh-hhhCCCCCCEEeccC
Q 017764          154 NNDFVGSLSP-EIYKLQVLSESQVDE  178 (366)
Q Consensus       154 ~N~l~g~iP~-~l~~l~~L~~L~l~~  178 (366)
                      .| +. .++. .|.+. +|+.+.+..
T Consensus        90 ~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   90 SN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cc-cc-EEchhhhcCC-CceEEEECC
Confidence            65 44 3333 45555 777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.0071  Score=55.77  Aligned_cols=86  Identities=24%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChh--hhhCCCCCCE
Q 017764           96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSE  173 (366)
Q Consensus        96 L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~  173 (366)
                      |.+.+.|++=++.|+..  .-...|+.|++|.|+-|.++..  ..+..+++|+.|+|..|.|. .+-+  -+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45677788888888743  2356899999999999999832  35778899999999999987 4433  3578999999


Q ss_pred             EeccCCCCcccCC
Q 017764          174 SQVDEGQLSSAAK  186 (366)
Q Consensus       174 L~l~~N~l~g~iP  186 (366)
                      |.|..|.=.|.-+
T Consensus        93 LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   93 LWLDENPCCGEAG  105 (388)
T ss_pred             HhhccCCcccccc
Confidence            9999999877554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.62  E-value=0.019  Score=53.58  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=18.6

Q ss_pred             CCCCcEEEccCCC-CCCCChhhhhCCCCCCEEeccCCC
Q 017764          144 NHSLTILLLDNND-FVGSLSPEIYKLQVLSESQVDEGQ  180 (366)
Q Consensus       144 l~~L~~L~L~~N~-l~g~iP~~l~~l~~L~~L~l~~N~  180 (366)
                      +++|.+|||++|. ++...-..|.+++.|++|.++.++
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            4555666665553 222222345555666666655543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.16  E-value=0.088  Score=27.16  Aligned_cols=10  Identities=50%  Similarity=0.501  Sum_probs=3.2

Q ss_pred             CcEEEccCCC
Q 017764          147 LTILLLDNND  156 (366)
Q Consensus       147 L~~L~L~~N~  156 (366)
                      |+.|+|++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.80  E-value=0.19  Score=32.17  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=15.8

Q ss_pred             CCCceEEEehhhHHHHHHHHHHHHHhh
Q 017764          306 SSKHIAILGGVIGGAILLVATVGIYLC  332 (366)
Q Consensus       306 ~~~~~~i~~~vv~g~~v~~~~~~~~~~  332 (366)
                      .+...+|..+|+..++++++++.++++
T Consensus         7 ~~~~vaIa~~VvVPV~vI~~vl~~~l~   33 (40)
T PF08693_consen    7 NSNTVAIAVGVVVPVGVIIIVLGAFLF   33 (40)
T ss_pred             CCceEEEEEEEEechHHHHHHHHHHhh
Confidence            344566777776666666665544444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.56  E-value=0.0082  Score=55.90  Aligned_cols=86  Identities=17%  Similarity=0.175  Sum_probs=64.4

Q ss_pred             CcCEEEccCCCCCCC-CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCC-CCCC-ChhhhhCCCCCCEE
Q 017764           98 HIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND-FVGS-LSPEIYKLQVLSES  174 (366)
Q Consensus        98 ~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~-l~g~-iP~~l~~l~~L~~L  174 (366)
                      .|++|||++..++.. +-.-+..+.+|+.|.|.++++...+-..+..-.+|+.|+|+..+ |+.. +.-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588999998887632 22345678889999999999998887888888899999998753 4421 12246788899999


Q ss_pred             eccCCCCcc
Q 017764          175 QVDEGQLSS  183 (366)
Q Consensus       175 ~l~~N~l~g  183 (366)
                      +|+...++-
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            998877653

>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins

Probab=91.49  E-value=1.3  Score=41.58  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=20.1

Q ss_pred             ceEEEehhhHHHHHHHHHHHHHhhhc---cccceeeeeee
Q 017764          309 HIAILGGVIGGAILLVATVGIYLCRC---NKVTIISKVIY  345 (366)
Q Consensus       309 ~~~i~~~vv~g~~v~~~~~~~~~~~~---~k~~~~~~~~~  345 (366)
                      ...+++++++.++++++++++.+||+   +......|+=|
T Consensus       197 ~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~~rlaqk~DY  236 (341)
T PF06809_consen  197 GLTLVLIVVCCVAGAAALIVAGYCWYRLQREIRLAQKVDY  236 (341)
T ss_pred             CeeeehhHHHHHHHHHHHHHhhheEEEecccccccccccc
Confidence            33444444555555555555555543   55666677767

NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=91.22  E-value=0.063  Score=37.96  Aligned_cols=26  Identities=15%  Similarity=0.345  Sum_probs=0.4

Q ss_pred             eEEEehhhHHHHHHHHHHHHHhhhcc
Q 017764          310 IAILGGVIGGAILLVATVGIYLCRCN  335 (366)
Q Consensus       310 ~~i~~~vv~g~~v~~~~~~~~~~~~~  335 (366)
                      .++++|+|+|+++++++++++++|++
T Consensus        12 aavIaG~Vvgll~ailLIlf~iyR~r   37 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLILFLIYRMR   37 (64)
T ss_dssp             -------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555545443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=91.06  E-value=0.089  Score=42.67  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=12.7

Q ss_pred             ceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764          309 HIAILGGVIGGAILLVATVGIYLCRC  334 (366)
Q Consensus       309 ~~~i~~~vv~g~~v~~~~~~~~~~~~  334 (366)
                      ...|+.||++|++++++ +++|+++|
T Consensus        66 i~~Ii~gv~aGvIg~Il-li~y~irR   90 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIIL-LISYCIRR   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             eeehhHHHHHHHHHHHH-HHHHHHHH
Confidence            34566666666544333 44444444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=90.55  E-value=0.2  Score=44.32  Aligned_cols=27  Identities=15%  Similarity=0.342  Sum_probs=14.9

Q ss_pred             CCceEEEehhhHHHHHHHHH-HHHHhhh
Q 017764          307 SKHIAILGGVIGGAILLVAT-VGIYLCR  333 (366)
Q Consensus       307 ~~~~~i~~~vv~g~~v~~~~-~~~~~~~  333 (366)
                      +....|++|||+|++.++++ ++++++|
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR   61 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVR   61 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence            44556777777776555544 3333344

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.38  E-value=0.65  Score=37.27  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L  171 (366)
                      .|.+.++|+.+.+.. .+...-...|.++.+|+.+.+..+ +...--..|.++.+|+.+.+.+ .+...-...|..+.+|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            366778899999885 566444567888889999999886 6633234577887899999976 4431223456778999


Q ss_pred             CEEeccCC
Q 017764          172 SESQVDEG  179 (366)
Q Consensus       172 ~~L~l~~N  179 (366)
                      +.+++..|
T Consensus        84 ~~i~~~~~   91 (129)
T PF13306_consen   84 KNIDIPSN   91 (129)
T ss_dssp             CEEEETTT
T ss_pred             cccccCcc
Confidence            99999765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.14  E-value=0.29  Score=27.91  Aligned_cols=18  Identities=44%  Similarity=0.540  Sum_probs=9.1

Q ss_pred             CCCcEEEccCCCCCCCChh
Q 017764          145 HSLTILLLDNNDFVGSLSP  163 (366)
Q Consensus       145 ~~L~~L~L~~N~l~g~iP~  163 (366)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555555 3443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.14  E-value=0.29  Score=27.91  Aligned_cols=18  Identities=44%  Similarity=0.540  Sum_probs=9.1

Q ss_pred             CCCcEEEccCCCCCCCChh
Q 017764          145 HSLTILLLDNNDFVGSLSP  163 (366)
Q Consensus       145 ~~L~~L~L~~N~l~g~iP~  163 (366)
                      ++|+.|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555555 3443

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=89.51  E-value=0.42  Score=37.15  Aligned_cols=17  Identities=18%  Similarity=0.020  Sum_probs=8.6

Q ss_pred             eEEEehhhHHHHHHHHH
Q 017764          310 IAILGGVIGGAILLVAT  326 (366)
Q Consensus       310 ~~i~~~vv~g~~v~~~~  326 (366)
                      .+|++++|++++++.++
T Consensus        66 gaiagi~vg~~~~v~~l   82 (96)
T PTZ00382         66 GAIAGISVAVVAVVGGL   82 (96)
T ss_pred             ccEEEEEeehhhHHHHH
Confidence            45666555554444333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.79  E-value=0.45  Score=27.13  Aligned_cols=20  Identities=40%  Similarity=0.652  Sum_probs=12.7

Q ss_pred             CCCCCeeeccCCcCCCCCCcc
Q 017764          120 LEELEVLDFGHNNFSGPLPND  140 (366)
Q Consensus       120 l~~L~~L~Ls~N~l~g~lP~~  140 (366)
                      |++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356677777777776 45543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.79  E-value=0.45  Score=27.13  Aligned_cols=20  Identities=40%  Similarity=0.652  Sum_probs=12.7

Q ss_pred             CCCCCeeeccCCcCCCCCCcc
Q 017764          120 LEELEVLDFGHNNFSGPLPND  140 (366)
Q Consensus       120 l~~L~~L~Ls~N~l~g~lP~~  140 (366)
                      |++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356677777777776 45543

>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor

Probab=87.11  E-value=3.3  Score=36.22  Aligned_cols=15  Identities=27%  Similarity=0.457  Sum_probs=8.3

Q ss_pred             EEehhhHHHHHHHHH
Q 017764          312 ILGGVIGGAILLVAT  326 (366)
Q Consensus       312 i~~~vv~g~~v~~~~  326 (366)
                      =.+..|||+++++.+
T Consensus       159 D~~SFiGGIVL~LGv  173 (186)
T PF05283_consen  159 DAASFIGGIVLTLGV  173 (186)
T ss_pred             chhhhhhHHHHHHHH
Confidence            344566665555544

Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=84.85  E-value=0.65  Score=40.44  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=16.0

Q ss_pred             ceEEEehhhHHHHHHHHHHHHHhh
Q 017764          309 HIAILGGVIGGAILLVATVGIYLC  332 (366)
Q Consensus       309 ~~~i~~~vv~g~~v~~~~~~~~~~  332 (366)
                      ...|+++||+|++++++++++++|
T Consensus        77 ~~~iivgvi~~Vi~Iv~~Iv~~~C  100 (179)
T PF13908_consen   77 ITGIIVGVICGVIAIVVLIVCFCC  100 (179)
T ss_pred             eeeeeeehhhHHHHHHHhHhhhee
Confidence            456777888877766665665553

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=84.82  E-value=1.3  Score=45.45  Aligned_cols=30  Identities=20%  Similarity=0.465  Sum_probs=18.4

Q ss_pred             CCceEEEehhhHHHHHHHHH-HHHHhhhccc
Q 017764          307 SKHIAILGGVIGGAILLVAT-VGIYLCRCNK  336 (366)
Q Consensus       307 ~~~~~i~~~vv~g~~v~~~~-~~~~~~~~~k  336 (366)
                      ....||++||++-++|+++| ++++++.|+|
T Consensus       266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk  296 (684)
T PF12877_consen  266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRK  296 (684)
T ss_pred             CCCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence            44789999998776655555 3333344433

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=84.41  E-value=11  Score=32.37  Aligned_cols=6  Identities=33%  Similarity=0.711  Sum_probs=2.6

Q ss_pred             eccCCc
Q 017764          345 YGANRS  350 (366)
Q Consensus       345 ~~~~~~  350 (366)
                      ||-...
T Consensus       129 Ygvl~~  134 (163)
T PF06679_consen  129 YGVLTT  134 (163)
T ss_pred             ecccCC
Confidence            444433

Their function is unknown.

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=83.32  E-value=0.89  Score=37.38  Aligned_cols=6  Identities=33%  Similarity=0.274  Sum_probs=2.9

Q ss_pred             eeeeee
Q 017764          340 ISKVIY  345 (366)
Q Consensus       340 ~~~~~~  345 (366)
                      -...+|
T Consensus        30 G~~P~~   35 (130)
T PF12273_consen   30 GLQPIY   35 (130)
T ss_pred             CCCCcC
Confidence            344555

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain

Probab=82.15  E-value=1.3  Score=34.23  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=19.1

Q ss_pred             CCCCceEEEehhhHHHHHHHHHHHHHhh
Q 017764          305 SSSKHIAILGGVIGGAILLVATVGIYLC  332 (366)
Q Consensus       305 ~~~~~~~i~~~vv~g~~v~~~~~~~~~~  332 (366)
                      +..+....++|||++++++.++++++++
T Consensus        12 ~~g~sW~~LVGVv~~al~~SlLIalaaK   39 (102)
T PF15176_consen   12 EGGRSWPFLVGVVVTALVTSLLIALAAK   39 (102)
T ss_pred             CCCcccHhHHHHHHHHHHHHHHHHHHHH
Confidence            3355667777888887777777666553

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=81.12  E-value=1.4  Score=40.88  Aligned_cols=17  Identities=41%  Similarity=0.628  Sum_probs=10.9

Q ss_pred             eEEEehhhHHHHHHHHH
Q 017764          310 IAILGGVIGGAILLVAT  326 (366)
Q Consensus       310 ~~i~~~vv~g~~v~~~~  326 (366)
                      ..|++|+++|++++.++
T Consensus       213 W~iv~g~~~G~~~L~ll  229 (278)
T PF06697_consen  213 WKIVVGVVGGVVLLGLL  229 (278)
T ss_pred             EEEEEEehHHHHHHHHH
Confidence            33466777777766666

>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell []

Probab=80.50  E-value=4.9  Score=31.94  Aligned_cols=16  Identities=38%  Similarity=0.322  Sum_probs=10.4

Q ss_pred             EEEehhhHHHHHHHHH
Q 017764          311 AILGGVIGGAILLVAT  326 (366)
Q Consensus       311 ~i~~~vv~g~~v~~~~  326 (366)
                      .++.+||||.+++.+.
T Consensus        84 ~aLp~VIGGLcaL~La   99 (126)
T PF03229_consen   84 FALPLVIGGLCALTLA   99 (126)
T ss_pred             cchhhhhhHHHHHHHH
Confidence            5778888885544433

; GO: 0019050 suppression by virus of host apoptosis

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 4e-27
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 15/155 (9%)

Query: 27  SLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLE 86
           SL  E   L+  ++ +  D    L  W S     NPC++ GV C D KV +++L    L 
Sbjct: 9   SLYREIHQLISFKDVLP-DK-NLLPDWSS---NKNPCTFDGVTCRDDKVTSIDLSSKPLN 63

Query: 87  ---GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 143
                ++  + SLT ++S+ L N+  +G +   F     L  LD   N+ SGP+     +
Sbjct: 64  VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSL 122

Query: 144 NH--SLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                L  L + +N                L+VL 
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           LEG +  E+  +  ++++IL  N  +G IP G      L  +   +N  +G +P  +G  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L IL L NN F G++  E+   + L 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLI 541

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 6e-18
 Identities = 25/87 (28%), Positives = 38/87 (43%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
             G + P + + + + S+ L  N  SG IP   G L +L  L    N   G +P +L   
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVL 171
            +L  L+LD ND  G +   +     L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNL 492

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 7e-18
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L GT+   + SL+ ++ + L  N   G IP+    ++ LE L    N+ +G +P+ L   
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L  + L NN   G +   I +L+ L+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLA 517

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 9e-17
 Identities = 34/115 (29%), Positives = 54/115 (46%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +   + + T++  I L NN  +G IP+  G LE L +L   +N+FSG +P +LG  
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWN 199
            SL  L L+ N F G++   ++K      +    G+     K +    E     N
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 85  LEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG 142
             G + P +       ++ + L+NN F+G IP       EL  L    N  SG +P+ LG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 143 INHSLTILLLDNNDFVGSLSPEIYKLQVL 171
               L  L L  N   G +  E+  ++ L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 78  LNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+L +    G +   +  +   +  + L  N F G +P  FG    LE L    NNFSG 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEIYKL 168
           LP D L     L +L L  N+F G L   +  L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L++        + P +   + ++ + +  N  SG          EL++L+   N F GP+
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
           P       SL  L L  N F G +   +      L  L 
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 76  VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            +L++    L G  +  I + T +K + + +N F G IP     L+ L+ L    N F+G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

Query: 136 PLPNDLGINH-SLTILLLDNNDFVGSLSPEIYKLQVL 171
            +P+ L     +LT L L  N F G++ P      +L
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 24/103 (23%), Positives = 43/103 (41%)

Query: 70  CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129
               K  +     L  +G  + ++  L+      + +  + G     F     +  LD  
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +N  SG +P ++G    L IL L +ND  GS+  E+  L+ L+
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 85  LEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGE--LEELEVLDFGHNNFSGPLPNDL 141
             G L   + +L+  + ++ L +N+FSG I     +     L+ L   +N F+G +P  L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 142 GINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                L  L L  N   G++   +  L  L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 48  GALTSWRSCDTENNPCSWFGVE----CSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSII 103
                 + C    N   + G+              N+      G  +P   +   +  + 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 104 LRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
           +  N  SG IP+  G +  L +L+ GHN+ SG +P+++G    L IL L +N   G +  
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 164 EIYKLQVLS 172
            +  L +L+
Sbjct: 699 AMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G +  EI S+ ++  + L +N  SG IP+  G+L  L +LD   N   G +P  +   
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
             LT + L NN+  G + PE+ + +    +
Sbjct: 704 TMLTEIDLSNNNLSGPI-PEMGQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 8e-13
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 78  LNLKDLCLEGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           L+L    + G              +K + +  N  SG +         LE LD   NNFS
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
             +P  LG   +L  L +  N   G  S  I     L
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 99.1 bits (248), Expect = 6e-24
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 29  NDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSD----GKVVNLNLKDLC 84
             +  ALL++++ +       L+SW    T+    +W GV C       +V NL+L  L 
Sbjct: 5   PQDKQALLQIKKDLGNPT--TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 85  LEGTLA---------------------------PEIQSLTHIKSIILRNNSFSGIIPEGF 117
           L                                P I  LT +  + + + + SG IP+  
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 118 GELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
            +++ L  LDF +N  SG LP  +    +L  +  D N   G++         L  S
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 77  NLNLKDLCL-----EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131
           NLNL  + L     EG  +    S  + + I L  NS +  + +  G  + L  LD  +N
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
              G LP  L     L  L +  N+  G + P+   LQ    S  
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.9 bits (167), Expect = 5e-13
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 85  LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
           L G + P   +L  +  + L  N   G     FG  +  + +    N+ +  L   +G++
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS 243

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +L  L L NN   G+L   + +L+ L 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
            ++L    L   L  ++    ++  + LRNN   G +P+G  +L+ L  L+   NN  G 
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 137 LPNDLGINHSLTILLLDNND 156
           +P   G      +    NN 
Sbjct: 284 IPQ-GGNLQRFDVSAYANNK 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 47  YGALTSWRSCDTENNPCSWFGVEC-SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR 105
                +W      +   +  GV   S+G+V  L+L+     G +   I  LT ++ + L 
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG 113

Query: 106 NNSFSG----IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVG 159
           ++          P+G       E       ++     +         L    ++++    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 160 SLSPEIYKLQVLSESQVDEGQLSS 183
           S+          ++       ++ 
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 45  DPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAP-EIQSLTHIKSII 103
             Y AL             S  G     G   N N K+L + G      + S   +  + 
Sbjct: 30  KDYLALKEIWD-ALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLS 87

Query: 104 LRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG 159
           L     SG +P+  G+L ELEVL  G +          P  +  N S          +  
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 160 SLSPEIYKLQVLS 172
           +      +     
Sbjct: 148 TFVDYDPREDFSD 160

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF--- 133
           N N +      T   +  +L  +  + + N      +P     L E+++++   N     
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 134 -----SGPLPNDLGINHSLTILLLDNNDF-VGSLSPEIYKLQVLSE 173
                      D  +   + I+ +  N+     +   + K++ L  
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINH 145
                  ++   + SI LR N  + +  +     L  L  +D  +N+FS   P     + 
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 146 SLTIL------LLDNNDFVGSLSPEIYKLQVLSE 173
           +L             N  +      I     L++
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
            +   D      L P      ++ SI L NN  S    E F     L  ++   N  +  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 136 ------PLPNDLGINHSLTILLLDNNDFVGSLSPEIY-----KLQVL 171
                     +    + LT + L  N     LS +        L  +
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN--HSLT 148
           P   S   + S+ L  N  + I     G  E++E L F HN     +PN         ++
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 149 ILLLDNNDFVG-------SLSPEIYKLQVLSE 173
            +    N+           L P  +K   +S 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF-SGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++ + L  +     +      I+ I +  N+  +  +     ++++L +L+  +N   G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG- 344

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                G    L  L L  N     +         +++ LS
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 20/112 (17%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
              +     + ++    +       I   +N+ + +  +    L +L     G++ F   
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAE 221

Query: 137 LPNDLGIN-------------------HSLTILLLDNNDFVGSLSPEIYKLQ 169
              +   N                     LT + + N   +  L   +  L 
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSG-------PLPNDLGIN 144
                 ++++   +N    I        +  +  +DF +N           PL       
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            +++ + L NN               LS 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 23/110 (20%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSG-------------------II 113
            L    +         ++  +  LT ++   + N+ F                       
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 114 PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP 163
              +  L++L  ++  +      LP  L     + ++ +  N  +     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 91  PEIQSLTHIKSIILRN------NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN 144
            +  + + +K   +RN      N      PEG      L  L  G N+    +   +  N
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPN 588

Query: 145 HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
             +++L + +N  +      +       
Sbjct: 589 --ISVLDIKDNPNISIDLSYVCPYIEAG 614

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 77  NLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
                 +  + T       +  + +    + ++     I +      +   +    NN +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
             +   +     L    + N+ FV     E ++ +    +Q
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
             + +           I     +  + + +N     + E       + VLD   N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 137 LPNDLGINHSLTILLLDNN 155
             + +       + +L  +
Sbjct: 603 DLSYVCPYIEAGMYMLFYD 621

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    ++       QSL+H+ ++IL  N    +    F  L  L+ L     N +   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
              +G   +L  L + +N       PE       L+ L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L +     +    P+I   L ++  + L       + P  F  L  L+VL+  HNNF   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 137 LPNDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVL 171
                   +SL +L    N  +      L      L  L
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 18/99 (18%), Positives = 28/99 (28%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
             NL+L    L    +    S   ++ + L       I    +  L  L  L    N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                      SL  L+    +     +  I  L+ L E
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF-SGP 136
           L L    ++         L+ ++ ++    + + +     G L+ L+ L+  HN   S  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
           LP       +L  L L +N        ++  L  +    +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           + ++L+   L  +G  +      T +K + L  N     +   F  LE+LE LDF H+N 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 134 SGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                  + ++  +L  L + +     + +     L  L  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 2/98 (2%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+ +   L+      +  SL ++  + + +          F  L  LEVL    N+F   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              D      +LT L L               L  L  
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 15/77 (19%), Positives = 22/77 (28%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 157 FVGSLSPEIYKLQVLSE 173
                      L  L +
Sbjct: 88  IQSLALGAFSGLSSLQK 104

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFS 134
              L     +G  A     L  ++ + L  N  SF G   +       L+ LD   N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
             + ++      L  L   +++        ++     L  L 
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 79  NLKDLCL------EGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV----LDF 128
            LK+L +         L     +LT+++ + L +N    I       L ++ +    LD 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 183
             N  +   P        L  L L NN    ++    I  L  L   ++  G+  +
Sbjct: 185 SLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGP 136
           L   +  L       I  L  +K + + +N      +PE F  L  LE LD   N     
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 137 LPNDLGINHSLTILLLDNN 155
              DL + H + +L L  +
Sbjct: 165 YCTDLRVLHQMPLLNLSLD 183

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE-LEVLDFGHNNFSGP 136
           LN+             + L  ++ +    N       +        L  L+   N+F+  
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 137 LPNDLGIN--HSLTILLLDNNDFVGSLSPEIYKLQVLS 172
             +   +        LL++      +   +   + VLS
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 74  KVVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGI------IPEGFGELEELEVL 126
           +V  L L +   EG L   +  +L  + ++ +     + +      I + F  L  +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQ 175
                            N     L L N  F    + ++  L+ L+ + 
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 19/96 (19%), Positives = 34/96 (35%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L++    +        Q L  +K + L++N  S +  + F     L  L    N+     
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            N      +L  L L +N    +      +L+ L E
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 61  NPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFG 118
           +      +E ++  + NL+L +  L  T       L  T++  + L  N+ + +  + F 
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 119 ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162
            L +LE     +NN      + L    ++  L L  +    S+S
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP 138
            L      G     ++ L+H+  + L +N F  I  E F +L EL+++D G NN +    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 139 NDLGINHSLTILLLDNNDFVG----SLSPEIYKLQVL 171
           +      SL  L L  N           P    L  L
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +  LNL    L    A      + + S+ +  N+ S + PE   +L  L+VL+  HN  S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEI---YKLQVLS 172
                      +LT L L +N      +        L  L 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE--ELEVLDFGHNNFSG 135
           L+L    L  T       L +++ ++L NN    +  E         L+ L+   N    
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             P        L  L L+N     SL+ ++      + 
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 78  LNLKDLCLEGTLAPEIQ---SLTHIKSIILRNNSFSGIIPEGFGELE--ELEVLDFGHNN 132
           L L ++ L  +L  ++    + T I+++ L N+  S      F  L+   L +LD  +NN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            +    +       L    L+ N+     S  ++ L  +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            LK L L+      L+ +     T++  + L +NS   I    F + + L  LD  HN  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 169
           S           +L  LLL NN      S E+    
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 78  LNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
           L+L    +   L   E + L +I  I L  N +  +    F  +  L+ L          
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 136 -PLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLSESQ 175
              P+      +LTIL L NN+    ++ ++     KL++L    
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LNL+    +       + L  +K I L  N+ + +    F     L+ L+   N  +   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 138 PNDLGIN-HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177
               G    +LT L +  N F  +     + +  ++E+  +
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS--------GPLP 138
            +     Q L ++  + L NN+ + I  +    LE+LE+LD  HNN +        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 139 NDLGINHSLTILLLDNNDFVGSLSPEIYK----LQVLS 172
             L     L IL L++N F   +  E++K    L+++ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    ++           ++ ++ L +N  S        +LE L+ L   +N      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 138 PNDLGI--NHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             +L I  N SL  L L +N          + +  L  
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLLD 153
           + + +  + L  N  S I  + F  L  LEVLD G N     L         ++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 154 NNDFVGSLSPEIYKLQVLSE 173
            N ++         +  L  
Sbjct: 439 YNKYLQLTRNSFALVPSLQR 458

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 18/78 (23%), Positives = 27/78 (34%)

Query: 96  LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
            T+I  + L +N    +    F    +L  LD G N  S   P        L +L L +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 156 DFVGSLSPEIYKLQVLSE 173
           +              L+E
Sbjct: 84  ELSQLSDKTFAFCTNLTE 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI---NHSLTILL 151
           + + +K + L +N      P  F  +  L  L   +      L   L +   N S+  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 152 LDNNDFVGSLSPEIYKLQVLS 172
           L N+    + +     L+  +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTN 249

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGP 136
           LNL    +    +     L H++ + L  N     +    +  LE +  +   +N +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 137 LPNDLGINHSLTILLLDNNDF 157
             N   +  SL  L+L     
Sbjct: 446 TRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-G 135
             ++    L        Q L  ++ + + +N   GI    F  L  L+ L   ++  S  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 136 PLPNDLG---INHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            L N+      +  L IL L  N      S     L  L
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 9/105 (8%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    L          L  ++   L  N+   +       L  +  L+   +     +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 138 ---------PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                             L  L +++ND  G  S     L  L  
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNN---------SFSGIIPEGFGELEELEVLDF 128
             L+   ++   +  +  L +++ + L+ +         S   I    F  L+ LE L+ 
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDF 157
             N+  G   N      +L  L L N+  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 10/107 (9%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           + N               +L  +  + L N      +P+   +L EL+ L+   N     
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 137 ---------LPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSE 173
                    L +D      + I  +  N+      S  + K+  L  
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 16/140 (11%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 45  DPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL 104
           +      +W   +       W                          ++ +   +  + L
Sbjct: 294 NNTIHSLNW---NFNKELDMWGDQPGV--------------------DLDNNGRVTGLSL 330

Query: 105 RNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE 164
                 G +P+  G+L EL+VL FG ++ +           +  +     +         
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 165 -IYKLQVLSESQVDEGQLSS 183
            +   Q L+ S + +  ++ 
Sbjct: 391 FLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 78  LNLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGI------------------- 112
           ++LKD  +         ++  IQ LT ++ I   N+ F+                     
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
               +  L++L  ++  +      LP+ L     L  L +  N  +   +        L+
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLA 541

Query: 173 ES 174
           + 
Sbjct: 542 DD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 87  GTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINH 145
             LA +  +   I+   +  N+           ++ +L +LD  HN          G N 
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNV 595

Query: 146 SLTILLLDNNDFVGSLSPEIYK----LQVLS 172
            LT L LD N     +  +       ++ L 
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 13/105 (12%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS---- 134
            +       + + +     +  ++ L  N       E F     +  +   +N  +    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 135 ---GPLPNDLGINHSLTILLLDNNDFVGSLSPEI-----YKLQVL 171
               P   +    + LT + L  N    SLS +        L  +
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN--HSLT 148
               +   +  + L  N    I  +     +++E L F HN     +PN       + + 
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 149 ILLLDNNDFVGSLSPEI 165
            +    N   GS    I
Sbjct: 648 SVDFSYNKI-GSEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 76  VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-------IPEGFGELEELEVLDF 128
             + L    ++        + + I +IIL NN  + I           +     L  +D 
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 129 GHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             N  +  L +D        L+ + +  N F  S   +      L  
Sbjct: 736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 8/94 (8%), Positives = 24/94 (25%), Gaps = 12/94 (12%)

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEE-----LEVLDFGHNNFSGPLPNDLGINHS 146
             +S+  + S+    N            +++        +   +N               
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 147 LTILLLDNNDF-------VGSLSPEIYKLQVLSE 173
           ++ ++L NN         +           +L+ 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILR------NNSFSGIIPEGFGELEELEVLDF 128
            L ++ +      +   +  + + +K+  +R       N      P G      L  L  
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNN 155
           G N+    +   L     L IL + +N
Sbjct: 814 GSNDIRK-VDEKLT--PQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSG 135
             + +   +       I +   +  + + +N    +  +      +L +LD   N N S 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISI 842

Query: 136 PLPNDLGINHSLTILLLDNN 155
            + +      +   +LL + 
Sbjct: 843 DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 77  NLNLKDL-CLEGTLAPEIQSLTHIKSIILRNNSFSGI------IPEGFGELEELEVLDFG 129
            LNL DL        PE++ +     I L++     +      I +    L +L+++ F 
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 130 HNNFSGP-------------------LPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV 170
           ++ F+                               LT + L N   +  L   +Y L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 171 L 171
           L
Sbjct: 517 L 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHN 131
             +L+ L L       ++     L  ++ +  ++++   +     F  LE+L  LD  + 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
           N             SL  L +  N F  +    +      L  L 
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
             +L  ++ + + +N+   +    + +L  L  LD   N              SL    L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 153 DNNDF 157
            NN  
Sbjct: 553 TNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
              L H+ ++IL  N      P  F  L  LE L       +      +G   +L  L +
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 153 DNNDFVGSLSPEI----YKLQVLS 172
            +N       P        L  + 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L +     +      +  + T++  + L       I    F  L  L++L+  HNN    
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 137 LPNDLGINHSLTILLLDNNDF 157
             +     +SL+ L    N  
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 78  LNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L+ +   L+         SL  +  + +   +        F  L  L  L    N+F   
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 137 LPND-LGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
             ++      +LT L L        +S  +    ++LQ+L+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 10/64 (15%), Positives = 18/64 (28%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
            + + ++ + L       I  + +  L  L  L    N      P       SL  L+  
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 154 NNDF 157
               
Sbjct: 113 ETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 22/77 (28%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
           +  K+I L  N    +    F    EL+ LD                 H L+ L+L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 157 FVGSLSPEIYKLQVLSE 173
                      L  L  
Sbjct: 92  IQSFSPGSFSGLTSLEN 108

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 12/116 (10%)

Query: 79  NLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEEL----EVLDF 128
            LK L +         L     +LT++  + L  N    I       L E       LD 
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQVLSESQVDEGQLSS 183
             N     + +       L  L L  N    ++    +  L  L   ++  G+   
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 95  SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGIN-HSLTILLLD 153
               ++ + L  N    I+   F  LEEL+ LDF H+           ++   L  L + 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 154 NNDFVGSLSPEIYKLQVLSE 173
             +           L  L+ 
Sbjct: 433 YTNTKIDFDGIFLGLTSLNT 452

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 93  IQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDL----GINHSL 147
           I  L  +K + + +N      +P  F  L  L  +D  +N       NDL          
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 148 TILLLDNNDFVGSLSPEI---YKLQVLS 172
             L +  N     +  +     KL  L+
Sbjct: 184 LSLDMSLNPI-DFIQDQAFQGIKLHELT 210

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 77  NLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +   + L +      +     L  +KS+ L  N  S  I      L  L  LD   N  S
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS 363

Query: 135 --GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
             G         +SL  L L  N  +  +S     L+ L  
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 79  NLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           NL+ L LE T    L   I +L ++KS+ +RN+  S  +      L +LE LD       
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              P   G    L  L+L +   + +L  +I++L  L +
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           NLK L +       L P I  L  ++ + LR  +     P  FG    L+ L     +  
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182
             LP D+     L  L L     +  L   I +L       V     +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           +L+ + ++      L   +Q    ++++ L  N     +P     L  L  L        
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 135 GPLPNDLGIN---------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
             LP  L             +L  L L+      SL   I  LQ L   ++    LS+
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 50  LTSWRS-CDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL--RN 106
           L+ W+   + + N       + +             L+   A  ++  T    + L  R+
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRS 90

Query: 107 NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY 166
                  P+    L  L+ +          LP+ +     L  L L  N    +L   I 
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIA 147

Query: 167 KLQVLSE 173
            L  L E
Sbjct: 148 SLNRLRE 154

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L+L    +        QS   + +++L  N    +        + L+ L F     S   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              L    +L  L L +N       P+ +  + L  
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL 150
           ++++L+H++S+ L  N    +  E F E  +LE+LD            +     H L +L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 151 LLDNNDFVGSLSPEI----YKLQVLS 172
            L ++      S ++      LQ L+
Sbjct: 431 NLSHSLL-DISSEQLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 12/81 (14%), Positives = 18/81 (22%)

Query: 75  VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
              L      L          L ++  + L       I  + F     L+ L    N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 135 GPLPNDLGINHSLTILLLDNN 155
                 L    +L  L     
Sbjct: 95  FMAETALSGPKALKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
             SL  +  + L +N  +    E    L+ +  L+   N+ S  LP+ L I      + L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554

Query: 153 DNNDF 157
             N  
Sbjct: 555 RQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L++L L       L   +  L+ +K ++L  N F  +          L  L    N   
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 135 GPL-PNDLGINHSLTILLLDNND--FVGSLSPEIYKLQVL 171
             L    L    +L  L L ++D       + ++  L  L
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L  L L       +A         +K +       S I        + LE L  G N+ 
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177
           S            L +L   NN        ++  LQ  +   ++
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG---PLPNDLGINHSLTI 149
            Q+L  +K + L ++       + F  L  L+ L+   N+F        N L     L I
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 150 LLLDNNDFVGSLSPEI----YKLQVLS 172
           L+L   D   S+          +  + 
Sbjct: 481 LVLSFCDLS-SIDQHAFTSLKMMNHVD 506

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 76  VNLNLKDLCLEG--TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
                +D+  E       E      ++SI L+ + F  I    F     L+ LD    + 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S  LP+ L    +L  L+L  N
Sbjct: 291 SE-LPSGLVGLSTLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
           +Q+L  ++ ++L     S I    F  L+ +  +D  HN  +      L     + + L 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 153 DNN 155
            N+
Sbjct: 532 SNH 534

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV--LDFGHNNFSG 135
           L L    +     P+      +K +  +NN+   +  E    L++     L+   N+ +G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
            +      +     L       +  +   +    + S
Sbjct: 194 -IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII---PEGFGELEELEVLDFGHNNFS 134
           LNL    L+ +       L  ++ + L+ N F             L  LE+L     + S
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 135 GPLPNDLGINHSLTILLLDNN 155
               +       +  + L +N
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 77  NLNLKDLCLEGTLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGELEE--LEVLDFGHNN 132
           +LN         +   ++  ++  +      +     I P  F  L E  +E ++   + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           F     N       L  L L        L   +  L  L +
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKK 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNN--FS 134
           L L     E        +   +  + ++ N+    +  G    LE L  LD  H++   S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                 L     L  L L  N+ +   +    +   L  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 9/79 (11%), Positives = 28/79 (35%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++++     +     E  +L + K +  +N++   +         ++E+L+         
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 137 LPNDLGINHSLTILLLDNN 155
                   H++  L +  N
Sbjct: 91  DTYAFAYAHTIQKLYMGFN 109

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           VN+ L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N 
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
               L        +L +L L +N  +  +     +   L  
Sbjct: 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+  
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 135 GPLPNDLGINHSLTILLLDNNDF 157
             L   L  +H+L  L L +ND+
Sbjct: 338 -TLK--LSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+ 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S            LT L + NN
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNN 157

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNF 133
           +LK L L      T++     L  ++ +  ++++   +     F  L  L  LD  H + 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
                       SL +L +  N F  +  P+I      L  L 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L  L L G    +LA      L+ ++ ++    + + +     G L+ L+ L+  HN  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 134 -SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176
            S  LP       +L  L L +N        ++  L  +    +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILLL 152
            SL ++  + + +          F  L  LEVL    N+F      D      +LT L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 153 DNNDFVGSLSPEI----YKLQVLS 172
                   LSP        LQVL+
Sbjct: 478 SQCQL-EQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 85  LEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 143
            +    P+I   L ++  + L       + P  F  L  L+VL+   N            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 144 NHSLTILLLDNNDFVGS 160
             SL  + L  N +  S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L+ L L      T+     QSL+H+ ++IL  N    +    F  L  L+ L     N 
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           +      +G   +L  L + +N
Sbjct: 113 ASLENFPIGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 10/62 (16%), Positives = 15/62 (24%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
            S   ++ + L       I    +  L  L  L    N              SL  L+  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 154 NN 155
             
Sbjct: 109 ET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
              K++ L  N    +    F    EL+VLD                   L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 157 FVGSLSPEI----YKLQVLS 172
              SL+         LQ L 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLV 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           ++++     +     E  +L + K +  +N++   +         ++E+L+         
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
                   H++  L +  N  +  L P ++     L VL 
Sbjct: 85  DTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           VN+ L  L L+    T    + +   +  + L  N    I+   F +++ LE L   +N 
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
               L        +L +L L +N  +  +     +   L  
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            L+ L +       L    Q +  +K + L +N     +     + + LE L   HN+  
Sbjct: 273 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 135 GPLPNDLGINHSLTILLLDNNDF 157
             L   L  +H+L  L L +ND+
Sbjct: 332 -TLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L +       L P + Q++  +  ++L  N  S +    F    +L  L   +NN 
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 134 SGPLPNDLGIN-HSLTILLLDNN 155
              + +D      SL  L L +N
Sbjct: 154 ER-IEDDTFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            ++ L L       +          I+ + +  N+   + P  F  +  L VL    N+ 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S            LT L + NN
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNN 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 79  NLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
           N+KDL +         P I  L++++ + +     +         L  L +LD  H+   
Sbjct: 67  NIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSP 163
             +   +     +  + L  N  +  + P
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 79  NLKDLCLEGT-----LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL+ L + G        P +  LT +  + + +++    I      L ++  +D  +N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLS 172
              +   L     L  L +  +  V       +  KL  L 
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLY 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            LK L +     +    + +L+ + S+ L NN       E  G L  L  L    N+ + 
Sbjct: 266 KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L     +      N 
Sbjct: 326 IRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           ++  L + G        I+ LT+++ + L  N  + I P     L +L  L  G N  + 
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD 102

Query: 136 PLPNDLGINHSLTILLLDNN 155
                L    +L  L L+ +
Sbjct: 103 ISA--LQNLTNLRELYLNED 120

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L  L +     T    + +L+ +  + +  N  S I      +L +L++L+ G N  S 
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
                L     L  L L+NN         I  L  L+ 
Sbjct: 280 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           +L  L L          + SLT +       N  + I P     +  L  L  G+N  + 
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L     LT L +  N
Sbjct: 236 LSP--LANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 26/101 (25%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGI---------------------IP 114
            L +L +     T    +Q+LT+++ + L  ++ S I                       
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL 148

Query: 115 EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
                +  L  L    +      P  +     L  L L+ N
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
             + D  L+  LA   QS  ++K + L  N  S I         +LE+L+   N      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 138 PNDLGINHSLTILLLDNN 155
             DL    +L  L L+NN
Sbjct: 73  TLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
            Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 153 DNN 155
            +N
Sbjct: 66  SSN 68

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 6/109 (5%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N F 
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
                D   + +  +  +              +  V +           
Sbjct: 251 CGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 79  NLKDLCLEGTLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG- 135
           +++ L         +        K+I L NN  + +     G    ++ LD   N     
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 171
                   + +L  L L  N     +  ++   KL+ L
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSG 135
           N+ L +  +      +    + ++ + L+ N    +   E     + LE L+  +N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
            +   +     L  L L +N     + PE      ++   +   +L  
Sbjct: 184 -VKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134
            LK L L       + PE QS   +  I LRNN    +I +     + LE  D   N F 
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 135 -GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            G L +    N  +  +       +   + E   +  L  
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
             K   +           + QS  ++K + L  N  S I         +LE+L+   N  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
              L   L    +L  L L+NN
Sbjct: 71  YETLD--LESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 79  NLKDLCLEG------TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
            ++ L L+         A    S   ++ + L+ N    +  +      +L+ LD   N 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK 202

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
            +  +  +      +T + L NN  V  +   +   Q L  
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%)

Query: 93  IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
            Q+    K   + ++S    +         ++ LD   N  S     DL     L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 153 DNN 155
            +N
Sbjct: 66  SSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +++ L         ++    Q   +I    L NN  + +     G    ++ LD   N  
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIY--KLQVL 171
                      + +L  L L  N     +  ++   KL+ L
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           +L+ +          PE+Q+L  + +I   NNS   +          LE +  G+N    
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE- 228

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
               +L     LT +  DNN    +L      L+ L+  
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR 265

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 22/124 (17%)

Query: 77  NLNLKDLCLEG----TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE---------- 122
           N  L++          +  E +++          + +    P G GE  E          
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 123 ---LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG 179
                 L+  +   S  LP        L  L+   N     L      L+ L     +  
Sbjct: 70  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 180 QLSS 183
            LS 
Sbjct: 125 ALSD 128

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L +        PE+Q+ + +K I + NNS    +P+       LE +  G+N    
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLEE 187

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            LP +L     LT +  DNN     L      L+ +
Sbjct: 188 -LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 69  ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 128
           +C D +   L L +L L  +L      L  +   +   NS +  +PE    L+ L V + 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 129 GHNNFSGPLPN----DLGINH-----------SLTILLLDNNDFVGSLSPEIYKLQVL 171
                S   P      +  N             L I+ +DNN     L      L+ +
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 89  LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG------ 142
           + P   S T ++  +  +++ +  +P     ++         + +    P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 143 -------INHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                  ++     L L+N     SL      L+ L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLV 97

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 15/123 (12%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
               +     +N  +         ++  L   +  L  +L      L     + + +N  
Sbjct: 140 PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQL 193

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ 169
           +  +P    EL +L      +N  +  LP        L  L++  N    SL     +L+
Sbjct: 194 A-SLPTLPSELYKLWAY---NNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLPSELK 244

Query: 170 VLS 172
            L 
Sbjct: 245 ELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 79  NLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           ++  L +       +      ++++ +  N  +  +P     L EL +      +     
Sbjct: 62  HITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 138 PNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                    L  L +  N    SL      LQ LS
Sbjct: 121 SG-------LCKLWIFGNQL-TSLPVLPPGLQELS 147

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 78  LNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L L       T+  E  ++L +++ + L ++    + P+ F  L  L  L       S  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 137 LPNDLGINH--SLTILLLDNNDF 157
           +  D    +  +LT L L  N  
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 15/109 (13%)

Query: 70  CS-DGKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127
           CS DG++      +L        ++ Q L   + ++L  N    +    F  LE+L++L+
Sbjct: 2   CSFDGRIAFYRFCNL-------TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 128 FGHNNFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVL 171
            G       +  +   N  +L IL L ++     L P+     + L  L
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFEL 102

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 14/80 (17%), Positives = 26/80 (32%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           LNL    +          L +++ + L  N    +    F  L ++  +D   N+ +   
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 138 PNDLGINHSLTILLLDNNDF 157
                    L  L L +N  
Sbjct: 355 DQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
           ++L  +K + L  N  + I  E F  L+ L+VL+  +N       ++      +  + L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 154 NNDFVGSLSPEIY----KLQVL 171
            N     +  + +    KLQ L
Sbjct: 347 KNHI-AIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNL---NLKDLCLEGTLAPEIQSLTHIKSIILRN 106
           + S        N             +++L    L++L +   L      + H++ +IL  
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQ 435

Query: 107 NSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGIN-----HSLTILLLDNNDFVGS 160
           N FS    +    E   LE L  G N        +L  +       L +L L++N    S
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-S 494

Query: 161 LSPEIY----KLQVLS 172
           L P ++     L+ LS
Sbjct: 495 LPPGVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
              L+            + L+H++ + L +N  + + P  F  L  L  L    N  +  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV- 518

Query: 137 LPNDLGINHSLTILLLDNN 155
           L ++  +  +L IL +  N
Sbjct: 519 LSHND-LPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 79  NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPL 137
            L D  L+       ++L  +  + L  N    +     FG+L  L+ +DF  N      
Sbjct: 108 GLSDAVLKDGY---FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

Query: 138 PNDL-GINH-SLTILLLDNNDFVGSLSPEIYKL 168
            ++L  +   +L+   L  N     +S +  K 
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153
             L  +  I L+ N  + I  + F  LE+L+ LD   N  +      +    S+  + L 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLS 389

Query: 154 NNDF 157
            N  
Sbjct: 390 GNKL 393

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 7/100 (7%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            V +L+L    L   L P + +L  ++ +   +N+   +  +G   L  L+ L   +N  
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
                   L     L +L L  N        E  + ++  
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERLAE 557

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 92  EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151
                  ++ + L +   + +      +L  +  LD  HN     LP  L     L +L 
Sbjct: 436 LKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQ 492

Query: 152 LDNNDFVGSLSPEIYKLQVLSE 173
             +N  + ++   +  L  L E
Sbjct: 493 ASDN-ALENV-DGVANLPRLQE 512

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L +L L          I +L ++  + L  N+ S I P     L +L+ L F +N  S 
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
              + L    ++  L   +N         +  L  +++
Sbjct: 346 --VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQ 379

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            +  L  +         ++ L ++  I   NN  + I P     L +L  +   +N  + 
Sbjct: 47  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L    +LT L L NN
Sbjct: 105 ITP--LANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL +L L G        + SLT++  + L NN  S + P     L +L  L  G N  S 
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 136 PLPNDLGINHSLTILLLDNN 155
             P  L    +LT L L+ N
Sbjct: 280 ISP--LAGLTALTNLELNEN 297

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L       +    + +LT+I  +   +N  S + P     L  +  L      ++ 
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSP-EIYKLQVLSESQVDEGQLSS 183
                +    +++I     N     ++P  I      +E  +     S 
Sbjct: 390 A---PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
            L+ L +     +    +  LT+++S+I  NN  S I P   G L  L+ L    N    
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

Query: 136 PLPNDLGINHSLTILLLDNN 155
                L    +LT L L NN
Sbjct: 236 --IGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL  L L     +    +  LT ++ +   N   + + P     L  LE LD   N  S 
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD 191

Query: 136 PLPNDLGINHSLTILLLDNN 155
              + L    +L  L+  NN
Sbjct: 192 --ISVLAKLTNLESLIATNN 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L+ L LE     ++  E    L  +  + LR+ + + I    F  L  L+VL+  H  +
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 134 SGPLPNDLGINHSLTILLLDNNDF 157
              +  +     +LT L + + + 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 12/78 (15%), Positives = 26/78 (33%)

Query: 78  LNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
           L +       T+ P      ++ S+ + + + + +       L  L  L+  +N  S   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 138 PNDLGINHSLTILLLDNN 155
            + L     L  + L   
Sbjct: 265 GSMLHELLRLQEIQLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NLK L +       ++      L  ++ + L   + + I  E    L  L VL   H N 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSE 173
           +          + L +L + +  ++ +++P       L+ 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 63  CSWFG--VECSDGKVVNL------NLKDLCLEGTLAPEIQS-----LTHIKSIILRNNSF 109
           CS     V C   + V +        + L L       +         H++ + L  N  
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
           S + P  F  L  L  L    N              +LT L +  N
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-- 134
            L++    L   L+     L  +K I + N+    +       L+ LE LD   N     
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 135 -GPLPNDLGINHSLTILLLDNNDF 157
                   G   SL  L+L  N  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL+ L L+     T+  +   SL  ++ + L +N  S +    FG L  L+ L+   N +
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 134 SG-PLPNDLGINHSLTILLLDNNDFVGSLSPE----IYKLQVLS 172
               + +      +L  L + N +    +       +  L  L 
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 78  LNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP 136
           L + ++     +       LT +  + ++  S      +    + ++  L    +  +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 137 LPNDLGINHSLTILLLDNN 155
           L     I  S+  L L + 
Sbjct: 188 LEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 95  SLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152
           +   +++++L  N    +    E    L+ L  LD   N F  P+P+       +  L L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 153 DNNDFVGSLSPEI-YKLQVL 171
            +      +   I   L+VL
Sbjct: 418 SSTGIR-VVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 79  NLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL 137
            L+ L +           L  ++ + +  N    +          L V+    N      
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVP 489

Query: 138 PNDLGINHSLTILLLDNNDFV 158
                   SL  + L  N + 
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 10/108 (9%)

Query: 68  VECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127
           + C    V +   +      T  P       +KS+ L  N  + I          L+VL 
Sbjct: 2   LSCDASGVCDGRSRSF----TSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLI 56

Query: 128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVL 171
              +  +    +      SL  L L +N    SLS   +     L+ L
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 79  NLKDLCLEGTLAPEIQ------SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
           ++K+L L+ + + E +          ++ +   N   + I      +L +L+ L+   N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75

Query: 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171
            SG L        +LT L L  N  +  LS  I  L+ L
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGN-KIKDLS-TIEPLKKL 112

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 77  NLNLKDLCLEGTLAPEIQSLTHIKSIILRNN---SFSGIIPEGFGELEELEVLDFGHNNF 133
           N  L +  L   L P       ++ + LRN    + SG+         +L+ LD  HN+ 
Sbjct: 183 NPELGERGLISALCP--LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 134 SGPLPNDLGINH--SLTILLLDNNDFVGSLSPEIY-KLQVL 171
                     +    L  L L        +   +  KL VL
Sbjct: 241 RD-AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 60  NNPCSWFGVECSDGKVVNLNLKDLCLEGTLA--PEIQSL--THIKSIILRNNSFSGIIPE 115
                   +E +   +  LNL+++      A   E+Q      +K + +          E
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 116 GFGELEELEVLDFGHNNFSGPLPND----LGINHSLTILLLDNNDFVGSLSPEIYKL 168
                  L  LD   N   G              +L +L L N     + S     L
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSAL 223

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 76  VNLNLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132
            N+N+K+  + G           ++    +   NN  +  + E  G L ELE L    N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 133 FSGPLPNDLGINH---SLTILLLDNNDFVGSLSPEI 165
               L     +     SL  L +  N          
Sbjct: 360 LKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L +L L+G     +     + L ++  + L  NS S +          L  L   +N  
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
              +P  L  +  + ++ L NN
Sbjct: 253 VK-VPGGLADHKYIQVVYLHNN 273

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           NL  L L       L+P    SL+ ++ + + +N+F  +    +  L  L+VLD+  N+ 
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 134 SGPLPNDL--GINHSLTILLLDNNDF 157
                         SL  L L  NDF
Sbjct: 236 MT-SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 32/109 (29%)

Query: 94  QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN---------FSGPLPN----D 140
              T +K + L  N     +   F  LE+LE LDF H+N         F   L N    D
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLD 132

Query: 141 LGINH-------------SLTILLLDNNDFVGSLSPEI----YKLQVLS 172
           +   H             SL +L +  N F  +  P+I      L  L 
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149
             +    ++  + + N      +       L EL  L    +      P+       L+ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDE 178
           L L  N    SLS +  +   L E  +  
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L +L L G     + P   Q L H++ + +  +    I    F  L+ L  ++  HNN 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           +    +     H L  + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL+ L L        P +  L  +  + L  N  S I P  F  L  L+ L    +    
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
              N      SL  + L +N+    L  +++     L+ + 
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 79  NLKDLCLEG----TLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L++L + G     + P     L+ +K + + N+  S I    F  L  L  L+  HNN 
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S    +       L  L L +N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 79  NLKDLCLEG---TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NLK L L        P +  L  ++ + +  N F  I P  F  L  L+ L   ++  S 
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 136 PLPNDLGINHSLTILLLDNNDFVGSLSPEIY----KLQVLS 172
              N      SL  L L +N+   SL  +++     L  L 
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           +L  L L       +     + L+ ++ + LRNN    I    F  +  L  LD G    
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 134 SGPLPNDLGIN-HSLTILLLDNN 155
              +         +L  L L   
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMC 206

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 13/110 (11%)

Query: 69  ECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127
           ECS  G       + L       PE+    H+  + L  NS + +    F  L++L+ L 
Sbjct: 7   ECSVIGYNAICINRGL----HQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 128 FGHNNFSGPLPNDLGIN-HSLTILLLDNNDFVGSLSPEI----YKLQVLS 172
                    + N+      SL IL LD N F+  L          L+VL+
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLT 109

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 79  NLKDLCLEG----TLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
            L +L L+      +  E     + +  + L +N    I       L  L  L   +N  
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 134 SGPLPNDLGINHSLTILLLDNN 155
           S  +P  L     L ++ L  N
Sbjct: 254 SR-VPAGLPDLKLLQVVYLHTN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 88  TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147
           +L  E   +     + L   + S  +P+      ++ VL+   N     LP       SL
Sbjct: 51  SLLKECL-INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPA---SL 102

Query: 148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
             L   +N    +L      L+ L    VD  QL+ 
Sbjct: 103 EYLDACDNRLS-TLPELPASLKHL---DVDNNQLTM 134

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 16/135 (11%)

Query: 79  NLKDLCLEG----TLAPEIQSLTHIKSII----LRNNSFSGIIPEGFGELEELEVLDFGH 130
           +L+ L +      +L        H +        R N  + I PE    L+    +    
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILED 239

Query: 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS 190
           N  S  +   L    +          F  S+S           +           +    
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS--- 294

Query: 191 CYERSIKWNGVLDED 205
             + S  W+    E+
Sbjct: 295 --DVSQIWHAFEHEE 307

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 79  NLKDLCLEGTLAPEI---QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG 135
           NL+ L L       +     L  +K + L  N   G +     +L  L  L+   N    
Sbjct: 50  NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 136 PLP-NDLGINHSLTILLLDNN 155
                 L     L  L L N 
Sbjct: 110 ISTLEPLKKLECLKSLDLFNC 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.5
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.5
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.49
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.45
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.4
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.71
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.65
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.61
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.94
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	90.03
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	89.61
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	89.49

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=5.6e-26  Score=214.64  Aligned_cols=160  Identities=28%  Similarity=0.486  Sum_probs=148.2

Q ss_pred             cCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC--cceeeeCC----CCEEEEEccCCCCCC--cCcccccCCC
Q 017764           26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS--WFGVECSD----GKVVNLNLKDLCLEG--TLAPEIQSLT   97 (366)
Q Consensus        26 ~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~--w~Gv~C~~----~~v~~L~L~~n~l~g--~~p~~l~~L~   97 (366)
                      .|.++|++||++||+++ .|+. .+.+|.   .+.+||.  |.||.|+.    ++|+.|+|++|.+.|  .+|..+.+++
T Consensus         2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~   76 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDL-GNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             CSCHHHHHHHHHHHHHT-TCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCCHHHHHHHHHHHHhc-CCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC
Confidence            47789999999999999 5564 688998   5678998  99999983    799999999999999  8999999999


Q ss_pred             CcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEec
Q 017764           98 HIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  176 (366)
Q Consensus        98 ~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l  176 (366)
                      +|++|+|++ |.+.+.+|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            999999995 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCcccc
Q 017764          177 DEGQLSSAAKKEQS  190 (366)
Q Consensus       177 ~~N~l~g~iP~~~~  190 (366)
                      ++|+++|.+|....
T Consensus       157 ~~N~l~~~~p~~l~  170 (313)
T 1ogq_A          157 DGNRISGAIPDSYG  170 (313)
T ss_dssp             CSSCCEEECCGGGG
T ss_pred             cCCcccCcCCHHHh
Confidence            99999999987544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.9e-23  Score=220.07  Aligned_cols=161  Identities=23%  Similarity=0.316  Sum_probs=128.4

Q ss_pred             hhhhccCchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeeeCCCCEEEEEccCCCCCCc---Cc-------
Q 017764           21 SLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGT---LA-------   90 (366)
Q Consensus        21 ~~~~~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~~~~v~~L~L~~n~l~g~---~p-------   90 (366)
                      +.+++++.++|++||++||+++. |+. .+.+|+   .+.|||.|.||+|+.++|+.|+|+++.+.|.   ++       
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~---~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS---SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCC---TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC---CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccC
Confidence            34455567899999999999995 776 899998   5779999999999989999999999999886   44       


Q ss_pred             ----------------ccccCCCCcCEEEccCCCCCCCCcc--ccCCCCCCCeeeccCCcCCCCCCccc-CCCCCCcEEE
Q 017764           91 ----------------PEIQSLTHIKSIILRNNSFSGIIPE--GFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL  151 (366)
Q Consensus        91 ----------------~~l~~L~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~  151 (366)
                                      ..+.++++|++|||++|.++|.+|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|+
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence                            4677788888888888888888887  88888888888888888888888765 6788888888


Q ss_pred             ccCCCCCCCChhh---hhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLSPE---IYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP~~---l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|++++..|..   +.++++|++|++++|.++|.+|
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  195 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD  195 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence            8888888777766   5666666666666666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.9e-23  Score=215.63  Aligned_cols=158  Identities=19%  Similarity=0.269  Sum_probs=141.4

Q ss_pred             chHHHHHHHHHHHhccCCCCCCC-------CCCCCCCCCCCCCCc---ceeeeC-CCCEEEEEccCCCCCCcCcccccCC
Q 017764           28 LNDEGLALLRLRERVVRDPYGAL-------TSWRSCDTENNPCSW---FGVECS-DGKVVNLNLKDLCLEGTLAPEIQSL   96 (366)
Q Consensus        28 ~~~~~~aL~~~k~~~~~~~~~~l-------~~W~~~~~~~~~C~w---~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L   96 (366)
                      ...|+.||.++++++.++.|...       .+|+   .+.++|.|   .||.|+ .++|+.|+|+++++.|.+|+++++|
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L  104 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL  104 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGC
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcC
Confidence            35799999999999976666533       3798   67899999   999998 6799999999999999999999999


Q ss_pred             CCcCEEEccCCC--------------------------------------------------------------------
Q 017764           97 THIKSIILRNNS--------------------------------------------------------------------  108 (366)
Q Consensus        97 ~~L~~L~Ls~N~--------------------------------------------------------------------  108 (366)
                      ++|++|+|++|.                                                                    
T Consensus       105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~  184 (636)
T 4eco_A          105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK  184 (636)
T ss_dssp             TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred             ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence            999999999884                                                                    


Q ss_pred             ----------CCCCCccccCCCCCCCeeeccCCcCCCC-----------------CCcccC--CCCCCcEEEccCCCCCC
Q 017764          109 ----------FSGIIPEGFGELEELEVLDFGHNNFSGP-----------------LPNDLG--INHSLTILLLDNNDFVG  159 (366)
Q Consensus       109 ----------l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-----------------lP~~l~--~l~~L~~L~L~~N~l~g  159 (366)
                                ++| +|..|+++++|++|+|++|+|+|.                 +|..++  ++++|++|+|++|++.|
T Consensus       185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence                      345 888899999999999999999986                 999999  99999999999999999


Q ss_pred             CChhhhhCCCCCCEEeccCCC-Ccc-cCCccc
Q 017764          160 SLSPEIYKLQVLSESQVDEGQ-LSS-AAKKEQ  189 (366)
Q Consensus       160 ~iP~~l~~l~~L~~L~l~~N~-l~g-~iP~~~  189 (366)
                      .+|..|+++++|++|++++|+ ++| .+|..+
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~  295 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDW  295 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHH
Confidence            999999999999999999998 998 787543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=2.9e-22  Score=212.72  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=137.1

Q ss_pred             CchHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCCC--CCc------------ceeeeC-CCCEEEEEccCCCCCCcC
Q 017764           27 SLNDEGLALLRLRERVVRDPYGALTSWRSCD--TENNP--CSW------------FGVECS-DGKVVNLNLKDLCLEGTL   89 (366)
Q Consensus        27 ~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~Gv~C~-~~~v~~L~L~~n~l~g~~   89 (366)
                      ...+|+.||++||+++. ++     +|+...  ...+|  |.|            .||.|+ .++|+.|+|++|+|.|.+
T Consensus       266 ~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred             cchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence            45689999999999994 33     676111  01355  999            999998 689999999999999999


Q ss_pred             cccccCCCCcCEEEc-cCCCCCCC--------------------------------------------------------
Q 017764           90 APEIQSLTHIKSIIL-RNNSFSGI--------------------------------------------------------  112 (366)
Q Consensus        90 p~~l~~L~~L~~L~L-s~N~l~g~--------------------------------------------------------  112 (366)
                      |++|++|++|++|+| ++|.++|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 77765444                                                        


Q ss_pred             --------------------CccccCCCCCCCeeeccCCcCCC-----------------CCCcccC--CCCCCcEEEcc
Q 017764          113 --------------------IPEGFGELEELEVLDFGHNNFSG-----------------PLPNDLG--INHSLTILLLD  153 (366)
Q Consensus       113 --------------------~P~~l~~l~~L~~L~Ls~N~l~g-----------------~lP~~l~--~l~~L~~L~L~  153 (366)
                                          +|..|++|++|++|+|++|+|+|                 .+|..++  ++++|++|+|+
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                78889999999999999999998                 3999988  99999999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCC-Ccc-cCCccc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKKEQ  189 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~-l~g-~iP~~~  189 (366)
                      +|++.|.+|..|+++++|++|+|++|+ |+| .+|..+
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i  537 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW  537 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence            999999999999999999999999998 999 788643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=3.2e-21  Score=183.28  Aligned_cols=160  Identities=15%  Similarity=0.195  Sum_probs=134.5

Q ss_pred             ccCchHHHHHHHHHHHhccCCCCCCCCCCCC-CCCCCCCCCcceeeeC----------CCCEEEEEccCCCCCCcCcccc
Q 017764           25 CWSLNDEGLALLRLRERVVRDPYGALTSWRS-CDTENNPCSWFGVECS----------DGKVVNLNLKDLCLEGTLAPEI   93 (366)
Q Consensus        25 ~~~~~~~~~aL~~~k~~~~~~~~~~l~~W~~-~~~~~~~C~w~Gv~C~----------~~~v~~L~L~~n~l~g~~p~~l   93 (366)
                      .++..+|+.+|++||..+..|+.+.+..|.. .....++|.|.|+.|.          ..+|+.|+|++|.++ .+|..+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            3456789999999999987777666778831 1246789999999995          368999999999998 788889


Q ss_pred             cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhC------
Q 017764           94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK------  167 (366)
Q Consensus        94 ~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~------  167 (366)
                      .++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+..+++|++|+|++|++.+.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            99999999999999998 88988999999999999999998 78988999999999999998888888877654      


Q ss_pred             ---CCCCCEEeccCCCCcccCCcc
Q 017764          168 ---LQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       168 ---l~~L~~L~l~~N~l~g~iP~~  188 (366)
                         +++|++|++++|+++ .+|..
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~  201 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPAS  201 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGG
T ss_pred             hccCCCCCEEECcCCCcC-cchHh
Confidence               888888888888887 66653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=6.2e-19  Score=154.60  Aligned_cols=158  Identities=17%  Similarity=0.239  Sum_probs=130.2

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      |.|..+.|..           .+++.|+|++|.+++..+. .+.++++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            7788888861           2789999999999866554 389999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhc
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQR  209 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~  209 (366)
                      |+|++..+..|..+++|++|+|++|++++.+|..|..+++|++|+|++|+|++..+      ...+. |.   .......
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~------l~~~~~~l---~~~~~~~  158 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH------LAWFAEWL---RKKSLNG  158 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG------GHHHHHHH---HHHCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc------chHHHHHH---HHcCCCC
Confidence            99998888889999999999999999999999999999999999999999985544      22221 11   1111223


Q ss_pred             ccccccccccccCcccCCCC
Q 017764          210 RLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       210 ~~~~c~~~~~~~g~~l~~~~  229 (366)
                      ....|..+..++|..+...+
T Consensus       159 ~~~~C~~P~~l~~~~l~~l~  178 (192)
T 1w8a_A          159 GAARCGAPSKVRDVQIKDLP  178 (192)
T ss_dssp             GGCBBCSSTTTTTSBGGGSC
T ss_pred             CCCCCCCChHHcCCChhhCc
Confidence            45678888888888876555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=8.5e-18  Score=150.53  Aligned_cols=167  Identities=19%  Similarity=0.174  Sum_probs=130.3

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  131 (366)
                      |.|..|.|..           .+++.|+|++|.|++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            6789999961           36899999999999766667899999999999999999888999999999999999999


Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccCc
Q 017764          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDE  204 (366)
Q Consensus       132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~~  204 (366)
                      +|+...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+.       .....+.|.+.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99954444578899999999999999988888899999999999999999876553222       22333333333333


Q ss_pred             hhh---------hcccccccccccccCcccCCCC
Q 017764          205 DTV---------QRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       205 ~~~---------~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      .+.         ......|..+..++|+.+...+
T Consensus       171 ~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~  204 (220)
T 2v9t_B          171 KWLADYLHTNPIETSGARCTSPRRLANKRIGQIK  204 (220)
T ss_dssp             HHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSC
T ss_pred             HHHHHHHHhCCCCccCCCcCCchHHcCCchhhCC
Confidence            222         1244679999999999886665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=4.3e-18  Score=149.51  Aligned_cols=157  Identities=21%  Similarity=0.281  Sum_probs=130.7

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  131 (366)
                      |.|..+.|..           .+++.|+|++|.|+ .+|..+.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            6677888861           36899999999998 78889999999999999999999888888999999999999999


Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcc
Q 017764          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRR  210 (366)
Q Consensus       132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~  210 (366)
                      +|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|+|.      +.|....+. |..   .......
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------C~c~l~~l~~~~~---~~~~~~~  159 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY------CDCNMQWLSDWVK---SEYKEPG  159 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHHHHHHH---HSSCCCS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee------cCCcCHHHHHHHH---hccCCCC
Confidence            999877778999999999999999999655557899999999999999987      666655443 211   1111234


Q ss_pred             cccccccccccCcccCCCC
Q 017764          211 LLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       211 ~~~c~~~~~~~g~~l~~~~  229 (366)
                      ...|..+..++|+.+...+
T Consensus       160 ~~~C~~P~~l~g~~l~~~~  178 (193)
T 2wfh_A          160 IARCAGPGEMADKLLLTTP  178 (193)
T ss_dssp             CCBEEESGGGTTCBTTTSC
T ss_pred             CcCcCCchHHCCCCcccCC
Confidence            5689999999999886666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=9.9e-18  Score=150.96  Aligned_cols=128  Identities=24%  Similarity=0.296  Sum_probs=114.8

Q ss_pred             CCCCCCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCee
Q 017764           58 TENNPCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL  126 (366)
Q Consensus        58 ~~~~~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L  126 (366)
                      ...+.|+|++|.|..           .+++.|+|++|.+++..+..+.++++|++|+|++|.|+...+..|..+++|++|
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence            467789999999972           368999999999998888889999999999999999986666678999999999


Q ss_pred             eccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       127 ~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|++|+|++..+..+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+
T Consensus        94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence            99999999766666889999999999999999 889999999999999999999986554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=2.4e-17  Score=142.15  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=108.8

Q ss_pred             CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      .|.|.++.|..           .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            37899999971           3689999999999976666689999999999999999977667789999999999999


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+|++.+|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99997666668899999999999999996555567889999999999999986554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=2.3e-17  Score=147.66  Aligned_cols=167  Identities=15%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      |.|..+.|+.           ..++.|+|++|.|++..+. .|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            5677777751           2456778888877765443 367777777777777777766666777777777777777


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccC
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLD  203 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~  203 (366)
                      |++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+.       .....+.|.+.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            777765555677777777777777777776677777777777777777777766554322       1122222322222


Q ss_pred             chhh---------hcccccccccccccCcccCCCC
Q 017764          204 EDTV---------QRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       204 ~~~~---------~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      ..+.         ......|..+..++|..+...+
T Consensus       171 l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~  205 (220)
T 2v70_A          171 LAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVA  205 (220)
T ss_dssp             GHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSC
T ss_pred             hHHHHHHHHhcCccccCCccCCChHHCCCChhhCC
Confidence            2111         1223468888888888876655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=9.4e-17  Score=141.89  Aligned_cols=125  Identities=22%  Similarity=0.268  Sum_probs=108.8

Q ss_pred             CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      .|.|.+|.|+.           .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            47899999971           3689999999999976666688999999999999999976666788999999999999


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            99996555668899999999999999997766678999999999999999986555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=143.08  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=106.7

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            45799999999999987777899999999999999999988888899999999999999999988899999999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|++++..|..|..+++|+.|++++|+|++..+
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99999998889999999999999999999985544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=5.2e-17  Score=170.96  Aligned_cols=94  Identities=28%  Similarity=0.479  Sum_probs=89.1

Q ss_pred             CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEE
Q 017764           95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES  174 (366)
Q Consensus        95 ~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L  174 (366)
                      ++++|++|||++|.++|.+|..|+++++|++|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCcccCCcc
Q 017764          175 QVDEGQLSSAAKKE  188 (366)
Q Consensus       175 ~l~~N~l~g~iP~~  188 (366)
                      ++++|+|+|.||..
T Consensus       710 ~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          710 DLSNNNLSGPIPEM  723 (768)
T ss_dssp             ECCSSEEEEECCSS
T ss_pred             ECcCCcccccCCCc
Confidence            99999999999954

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=3.8e-16  Score=142.20  Aligned_cols=113  Identities=21%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+.+..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            46677777777776656566777777777777777776666666667777777777777665444555666666666666


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|++++..+..|..+++|++|+|++|++++..+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            666664444445666666666666666664443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=1.4e-15  Score=139.96  Aligned_cols=112  Identities=21%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      .++.|+|++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            35667777777765444467777777777777777765444445667777777777777775444456667777777777


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      +|.+++..+..|..+++|++|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence            77777655556677777777777777776433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=1.2e-16  Score=150.59  Aligned_cols=119  Identities=21%  Similarity=0.357  Sum_probs=112.2

Q ss_pred             CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++ |.+.+.+|..+.++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            5789999995 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCChhhhhCCC-CCCEEeccCCCCcccCCccccc
Q 017764          152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKKEQSC  191 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~g~iP~~~~c  191 (366)
                      |++|.++|.+|..++.+. +|++|++++|+++|.+|..+..
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            999999999999999998 9999999999999999875443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.63  E-value=1.1e-15  Score=136.60  Aligned_cols=118  Identities=16%  Similarity=0.215  Sum_probs=106.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.|+...+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  135 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence            57999999999999888889999999999999999999655566889999999999999999888889999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccccccccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSI  196 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~  196 (366)
                      ++|++++..+..|..+++|+.|+|++|+|.      +.|....+
T Consensus       136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------c~c~l~~l  173 (220)
T 2v9t_B          136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------CDCHLKWL  173 (220)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHH
T ss_pred             CCCcCCEECHHHHhCCCCCCEEEeCCCCcC------CCCccHHH
Confidence            999999877778999999999999999997      55554433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=6.6e-16  Score=157.42  Aligned_cols=151  Identities=17%  Similarity=0.211  Sum_probs=120.0

Q ss_pred             CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..++.|+|++|.+. +.+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+..+++|++|+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            46788889888744 44667788899999999999999988888899999999999999999977777888999999999


Q ss_pred             ccCCCCCCCChhhhhCC-CCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCC
Q 017764          152 LDNNDFVGSLSPEIYKL-QVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l-~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      |++|++++..|..+..+ ++|++|+|++|+|+      |+|....+. |.............+.|..+..++|..+....
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence            99999998888888887 68999999999887      888776655 32111111112345789999999999886554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=1.6e-15  Score=143.84  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccC---------CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQS---------LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI  143 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~---------L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~  143 (366)
                      .+++.|+|++|++.+.+|..+..         +++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence            35666666666655555555443         556666666666655 555555555566666666665552 4445555


Q ss_pred             CCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       144 l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      +++|++|+|++|++.+.+|..+..+++|++|++++|++.+.+|.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence            55555555555555555555555555555555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=4.7e-15  Score=130.89  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=102.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            57999999999999665556789999999999999999776677899999999999999999766666899999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..+..+++|++|++++|.+.+..|.
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             CCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            99999976666789999999999999999987764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=3.6e-15  Score=127.98  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=93.3

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N  155 (366)
                      +.|++++|.|+ .+|..+.  ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            46788889888 5777664  89999999999999988999999999999999999999665566789999999999999


Q ss_pred             CCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          156 DFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +|++..+..|..+++|++|+|++|+|++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9997666679999999999999999983

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=6.5e-15  Score=133.99  Aligned_cols=115  Identities=23%  Similarity=0.219  Sum_probs=98.0

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            57899999999999877777889999999999999999777777889999999999999999655556788999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..|..+++|++|+|++|++++..+.
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99999866666788899999999999999866653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.5e-15  Score=126.92  Aligned_cols=112  Identities=20%  Similarity=0.201  Sum_probs=101.2

Q ss_pred             CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46889999999998 88998899999999999999999976  7899999999999999999987888888899999999


Q ss_pred             ccCCCCCCC-ChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|.+++. .+..+..+++|++|++++|++++..+
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            999999963 34789999999999999999986554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=7.7e-15  Score=135.18  Aligned_cols=115  Identities=22%  Similarity=0.228  Sum_probs=95.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            57889999999988766666788899999999999998777777888889999999999888666666788888999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..+..+++|++|++++|++++..+.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence            99988876666778888899999999988876664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=5.5e-16  Score=162.19  Aligned_cols=112  Identities=25%  Similarity=0.324  Sum_probs=102.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|+|++|.+. .+|..+.+|++|++|+|++|.|+ .+|..|++|++|++|+|++|+|+ .+|..|+.|++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            35678999999988 78888889999999999999999 89999999999999999999999 88999999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      ++|.|+ .+|..|+++++|++|+|++|+|+|.+|..
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            999997 88989999999999999999999877753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=1.6e-15  Score=152.74  Aligned_cols=125  Identities=21%  Similarity=0.275  Sum_probs=108.9

Q ss_pred             CCCcceeeeCC-------------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeec
Q 017764           62 PCSWFGVECSD-------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF  128 (366)
Q Consensus        62 ~C~w~Gv~C~~-------------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~L  128 (366)
                      .|.|.|+ |+.             .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            3888887 761             26899999999999888888999999999999999999888889999999999999


Q ss_pred             cCCcCCCCCCcccCCCCCCcEEEccCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       129 s~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..++.+++|++|+|++|.+++ .+|..+.++++|++|++++|++.+.+|.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            9999997666679999999999999999986 4667888999999999999987777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.59  E-value=4.5e-15  Score=151.23  Aligned_cols=116  Identities=17%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|+|++|.|++..+..|.++++|++|||++|.|++..+..|.+|++|++|+|++|+|++..+..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999766678999999999999999999877788999999999999999999655567899999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc-cCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKE  188 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g-~iP~~  188 (366)
                      ++|++++..+..|+++++|++|++++|++++ .+|..
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  168 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  168 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence            9999996666678999999999999999875 45543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=8.7e-15  Score=131.58  Aligned_cols=110  Identities=21%  Similarity=0.187  Sum_probs=99.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.|....+..+..+++|++|+|++|.|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  142 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL  142 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence            57999999999998554455799999999999999999877777899999999999999999 89999999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|++++..+..|..+++|+.|++++|+|.+
T Consensus       143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999997666778999999999999999883

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.2e-14  Score=125.37  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=93.0

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N  155 (366)
                      +.+++++|+|+ .+|..+.  ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57899999996 7887765  89999999999999988999999999999999999999644445789999999999999


Q ss_pred             CCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          156 DFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++..+..|..+++|++|+|++|+|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999655556999999999999999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=3.4e-15  Score=139.50  Aligned_cols=115  Identities=18%  Similarity=0.282  Sum_probs=84.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+.+..+..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|+.|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            467777777777776666667777777777777777765 4667777777777777777777766667777777777777


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            777777765555677777777777777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=5.4e-15  Score=126.05  Aligned_cols=112  Identities=18%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             CCEEEEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            46899999999998 78888889999999999999999865  7889999999999999999987888887899999999


Q ss_pred             ccCCCCCCCC-hhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|.+++.. +..+..+++|++|++++|++++..+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            9999998532 2688999999999999999986544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=9.2e-15  Score=127.86  Aligned_cols=111  Identities=20%  Similarity=0.283  Sum_probs=100.3

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCcc-ccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      +.|++++|+|+ .+|..+..  +|++|+|++|.+++..+. .|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68999999996 78876654  899999999999976664 489999999999999999998899999999999999999


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ  189 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~  189 (366)
                      |++++..+..|.++++|++|+|++|++++.+|..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  122 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence            99998888889999999999999999999887644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=6.6e-15  Score=144.82  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=104.7

Q ss_pred             CCCCcce--eeeCC----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCC-ccccCCCCCCCeee
Q 017764           61 NPCSWFG--VECSD----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLD  127 (366)
Q Consensus        61 ~~C~w~G--v~C~~----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~-P~~l~~l~~L~~L~  127 (366)
                      +.|.|.+  |.|+.          .+++.|+|++|.+++..+..+.++++|++|+|++|.+.+.+ +..|.++++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            3466555  77762          46899999999999877888999999999999999887666 45688899999999


Q ss_pred             ccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhh--hhCCCCCCEEeccCCCCcccCCcc
Q 017764          128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       128 Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~--l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      |++|++++..|..+.++++|++|+|++|++++.++..  +.++++|++|++++|++++..|..
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence            9999998777888888899999999999888766665  788888888888888888877753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=2.1e-14  Score=132.22  Aligned_cols=113  Identities=23%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+.+ + +.+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            578889999988886 3 46888889999999999988777777888899999999999988766666788889999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..+..+++|++|++++|++++..+.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            99988866666678888999999999988866554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=6.8e-15  Score=136.14  Aligned_cols=113  Identities=21%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            46777777777777666666777777777777777777655555777777777777777777444445667777777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      ++|.+++..|..+..+++|+.|++++|++++..
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            777777666777777777777777777776533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=7e-15  Score=140.36  Aligned_cols=123  Identities=24%  Similarity=0.326  Sum_probs=97.9

Q ss_pred             CCCCCCcceeeeC-------------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCe
Q 017764           59 ENNPCSWFGVECS-------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV  125 (366)
Q Consensus        59 ~~~~C~w~Gv~C~-------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  125 (366)
                      ....|.|.|+ |+             ..+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4456788776 54             136889999999998655557889999999999999999877888889999999


Q ss_pred             eeccCCcCCCCCCc-ccCCCCCCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCC-Cccc
Q 017764          126 LDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQ-LSSA  184 (366)
Q Consensus       126 L~Ls~N~l~g~lP~-~l~~l~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~-l~g~  184 (366)
                      |+|++|++++ ++. .+..+++|++|+|++|+++ .+|.  .+.++++|++|++++|+ +.+.
T Consensus       105 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          105 LDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             EECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             EECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccccc
Confidence            9999999985 554 4888899999999999988 4554  67888899999998885 4433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.55  E-value=1.8e-14  Score=146.89  Aligned_cols=114  Identities=18%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..++++++|++|+|+
T Consensus        57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  136 (606)
T 3vq2_A           57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA  136 (606)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred             cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence            34444444444443334444444444444444444444444444455555555555555543333445555555555555


Q ss_pred             CCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          154 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       154 ~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      +|.+++ .+|..++++++|++|++++|++++..+.
T Consensus       137 ~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             CCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            555543 3455555556666666666655554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=1.2e-14  Score=139.60  Aligned_cols=121  Identities=24%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCccccc-CCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      |.+..+.|..           ..++.|+|++|.|++..+..+. ++++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            5566666651           2456777777777655444454 666777777777776655555666666666666666


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      |+|++..+..|..+.+|++|+|++|++++..+..|..+++|++|+|++|+|++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            66664444455666666666666666665555556666666666666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=2e-14  Score=136.75  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=98.0

Q ss_pred             CCcceeeeCCCCEEEEEccCC-CCCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc
Q 017764           63 CSWFGVECSDGKVVNLNLKDL-CLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND  140 (366)
Q Consensus        63 C~w~Gv~C~~~~v~~L~L~~n-~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~  140 (366)
                      |.|..|.|          +++ +|+ .+|. |..+++|++|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..
T Consensus         8 C~~~~v~~----------~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A            8 HGSSGLRC----------TRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             SSSSCEEC----------CSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             ccCCEEEc----------CCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            77776666          455 677 5888 99999999999996 9999888889999999999999999999988888


Q ss_pred             cCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764          141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK  197 (366)
Q Consensus       141 l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~  197 (366)
                      |.++++|+.|+|++|+|++..+..+..+. |+.|+|.+|+|.      +.|....+.
T Consensus        76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~------c~c~l~~~~  125 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH------CSCALRWLQ  125 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC------CCGGGHHHH
T ss_pred             hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc------CCCccHHHH
Confidence            99999999999999999965555555555 999999999997      667655444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.53  E-value=1.3e-14  Score=147.09  Aligned_cols=108  Identities=22%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57899999999999877788999999999999999999888899999999999999999998 68876  7899999999


Q ss_pred             cCCCCCC-CChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|++++ .+|..|+++++|++|++++|++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9999986 456889999999999999998875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.53  E-value=2.1e-14  Score=141.24  Aligned_cols=111  Identities=21%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+.+.++..+.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            56666666666666666666666666666666666666666666666666666666666665555666666666666666


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      +|++++..|..|..+++|++|++++|++++.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhhccccccccEEECCCCccccC
Confidence            6666666566666666666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=2.2e-14  Score=145.90  Aligned_cols=109  Identities=22%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      .++.|+|++|.|++ +|. +.+|++|++|+|++|.|+ .+|..|+.|++|++|+|++|+|++ +| .++.+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57899999999996 676 999999999999999999 899999999999999999999996 78 89999999999999


Q ss_pred             CCCCCCCC-hhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          154 NNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       154 ~N~l~g~i-P~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      +|+|++.. |..++.+++|+.|+|++|+|++.+|.
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            99999877 99999999999999999999988763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=142.27  Aligned_cols=154  Identities=20%  Similarity=0.188  Sum_probs=88.6

Q ss_pred             CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      +++.|+|++|+..+.++. .|.++++|++|+|++|.++ .+| .+..+++|++|+|++|++++..|..|..+++|+.|+|
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence            567777777443334443 4666777777777777766 344 3566666777777777666655666666666666666


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc-------ccccccccccCccCchhh-----------hcccccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ-------SCYERSIKWNGVLDEDTV-----------QRRLLQI  214 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~-------~c~~~~~~~~~~~~~~~~-----------~~~~~~c  214 (366)
                      ++|++++..+..|.++++|++|+|++|+|++..+..+       .-.+..+.|.+.+...+.           ......|
T Consensus       239 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C  318 (440)
T 3zyj_A          239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARC  318 (440)
T ss_dssp             TTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBE
T ss_pred             CCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCC
Confidence            6666666656666666666666666666664333211       111222223232222221           1224578


Q ss_pred             cccccccCcccCCCC
Q 017764          215 NPFRNLKGRILGIAP  229 (366)
Q Consensus       215 ~~~~~~~g~~l~~~~  229 (366)
                      ..+..++|+.+....
T Consensus       319 ~~P~~l~g~~l~~l~  333 (440)
T 3zyj_A          319 NTPPNLKGRYIGELD  333 (440)
T ss_dssp             EESTTTTTCBCC---
T ss_pred             CChhHhcCccHhHhh
Confidence            888888888875444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.52  E-value=5.4e-14  Score=130.04  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~-l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            367888888888886655668888888888888888887777788888888888888887 6655567788888888888


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|.+++..+..+.++++|++|++++|++++..+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence            88888887777778888888888888888875544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=4.7e-14  Score=129.86  Aligned_cols=110  Identities=18%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            35555555555554433345555555555555555554444445555555555555555554444445555555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +|++++..+..+.++++|++|++++|++++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccce
Confidence            555543333344455555555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.51  E-value=2.1e-14  Score=141.68  Aligned_cols=154  Identities=19%  Similarity=0.155  Sum_probs=95.4

Q ss_pred             CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      +++.|+|++|+..+.++. .+.++++|++|+|++|.+++ +| .+..+++|++|+|++|++++..|..|.++++|+.|+|
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV  249 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence            567777777444344444 46677777777777777764 33 4667777777777777777666666777777777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccc-------ccccccccccCccCchhhh-----------cccccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ-------SCYERSIKWNGVLDEDTVQ-----------RRLLQI  214 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~-------~c~~~~~~~~~~~~~~~~~-----------~~~~~c  214 (366)
                      ++|++++..+..|..+++|++|+|++|+|++..+..+       .-....+.|.+.+...+..           .....|
T Consensus       250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C  329 (452)
T 3zyi_A          250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRC  329 (452)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBE
T ss_pred             CCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEe
Confidence            7777776666667777777777777777764333221       1122222333333322211           123578


Q ss_pred             cccccccCcccCCCC
Q 017764          215 NPFRNLKGRILGIAP  229 (366)
Q Consensus       215 ~~~~~~~g~~l~~~~  229 (366)
                      ..+..++|+.+....
T Consensus       330 ~~P~~l~g~~l~~~~  344 (452)
T 3zyi_A          330 HAPMHMRGRYLVEVD  344 (452)
T ss_dssp             EESTTTTTCBTTSCC
T ss_pred             CCchHhccchhhccc
Confidence            889999988875544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.51  E-value=1.9e-14  Score=146.70  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=87.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+.+..|..+.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+..+++|+.|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            467788888888877777777778888888888888776 3677777788888888888888777777777778888888


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|++++.+|..+.++++|+.|++++|+++ .+|.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            8888887777777777788888888888777 3443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.51  E-value=8.3e-15  Score=151.03  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             CCcceeeeC---CCCEEEEEccCCCCCCc-----------------Cccccc--CCCCcCEEEccCCCCCCCCccccCCC
Q 017764           63 CSWFGVECS---DGKVVNLNLKDLCLEGT-----------------LAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL  120 (366)
Q Consensus        63 C~w~Gv~C~---~~~v~~L~L~~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~l~~l  120 (366)
                      +...|+.-.   ..+++.|+|++|.++|.                 +|..++  ++++|++|+|++|.+.|.+|..|+++
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            455564321   46899999999999986                 999999  99999999999999999999999999


Q ss_pred             CCCCeeeccCCc-CCC-CCCcccCCC------CCCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764          121 EELEVLDFGHNN-FSG-PLPNDLGIN------HSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l------~~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|++|+|++|+ ++| .+|..++.+      ++|++|+|++|+++ .+|.  .++++++|++|++++|+++|.+|
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            999999999998 998 899988876      99999999999999 8998  89999999999999999999999

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=6.7e-14  Score=122.57  Aligned_cols=107  Identities=17%  Similarity=0.262  Sum_probs=96.8

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N  155 (366)
                      +.+++++|+++ .+|..+.  .+|++|+|++|.|+ .+|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            47899999998 6787654  68999999999998 78899999999999999999999877778999999999999999


Q ss_pred             CCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       156 ~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++++..+..|..+++|++|+|++|++++..+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            9998888889999999999999999996444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.50  E-value=5e-14  Score=139.04  Aligned_cols=117  Identities=21%  Similarity=0.207  Sum_probs=95.4

Q ss_pred             cceeeeC-----------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764           65 WFGVECS-----------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (366)
Q Consensus        65 w~Gv~C~-----------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l  133 (366)
                      |..|.|.           ..+++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            5677776           13689999999999988888899999999999999999988888999999999999999999


Q ss_pred             CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCC
Q 017764          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL  181 (366)
Q Consensus       134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l  181 (366)
                      ++..+..+..+++|++|+|++|.+++..+..|.++++|+.|++++|+.
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~  183 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK  183 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence            965556688899999999999998855444555555555555555433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=8.6e-14  Score=136.88  Aligned_cols=122  Identities=20%  Similarity=0.174  Sum_probs=92.8

Q ss_pred             cceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764           65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (366)
Q Consensus        65 w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l  133 (366)
                      |..|.|..           .+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            56777751           3578899999999877777888899999999999998877778888889999999999988


Q ss_pred             CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++..+..+..+++|++|+|++|.+++..+..|.++++|++|++++|+..+.++
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            85544568888888888888888875555456666666666666644443333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.50  E-value=1.2e-13  Score=128.56  Aligned_cols=113  Identities=21%  Similarity=0.173  Sum_probs=87.1

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.|. .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            46777888888777 66777788888888888888888766677888888888888888888655555778888888888


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..+..|..+++|++|+|++|+|+ .+|.
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence            888888544445677888888888888887 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.50  E-value=6.3e-14  Score=138.94  Aligned_cols=122  Identities=21%  Similarity=0.181  Sum_probs=96.1

Q ss_pred             cceeeeC-----------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764           65 WFGVECS-----------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (366)
Q Consensus        65 w~Gv~C~-----------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l  133 (366)
                      |..|.|.           ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            5677775           13678888888888877777788888888888888888887788888888888888888888


Q ss_pred             CCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       134 ~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence            85444457788888888888888887777777888888888888887776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.50  E-value=4.8e-14  Score=131.66  Aligned_cols=110  Identities=19%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             CCEEEEEccCCCCCC-cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+.+ .+|..+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|+
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence            356666676666665 3555666666677777777766666566666666677777777766654444566666677777


Q ss_pred             ccCCCCCCCChhhhhCCC-CCCEEeccCCCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~  182 (366)
                      |++|.+++..|..+..++ +|++|++++|+|+
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            777766666666666663 6667777776665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.50  E-value=6.6e-14  Score=143.12  Aligned_cols=109  Identities=22%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      ++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+.+++|++|+|++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            34555555555544444555555555555555555555555555555555555555555532222345555555555555


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      |.+++..|..|..+++|++|++++|.+++
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            55555555555555556666666555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.50  E-value=9.1e-14  Score=127.91  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|++++|++.+..+..+..+++|++|+|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            57999999999999776668999999999999999999888888999999999999999999766667999999999999


Q ss_pred             cCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|.+++ .+|..+.++++|++|++++|++++..+.
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            9999986 4789999999999999999999876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=150.63  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CEEEEEccCCCCCCcCcc-cccCCCCcCEEEccCCCCC-----CCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764           74 KVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL  147 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~-----g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L  147 (366)
                      +++.|+|++|.+++..+. .+..+++|++|+|++|.++     +..+..|..+++|++|+|++|++++..|..+..+++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence            445555555555533222 2334555566666666554     2333456666777777777777776666666777777


Q ss_pred             cEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764          148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       148 ~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      +.|+|++|++++..+..+.  ++|+.|++++|+|+|.+|..
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred             heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence            7777777777754444333  66777777777777766643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.49  E-value=2.3e-13  Score=125.03  Aligned_cols=110  Identities=23%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+.+..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            34444444444443322334444444444444444444444444444555555555555443222234445555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +|.+++..+..|..+++|++|++++|++++
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            555553333344455555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=8.5e-14  Score=141.91  Aligned_cols=117  Identities=14%  Similarity=0.048  Sum_probs=100.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..++++++|++|+|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            36889999999999877888999999999999999999888888999999999999999998888888899999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc-cCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKEQ  189 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g-~iP~~~  189 (366)
                      ++|.+++..+..+.++++|++|++++|++++ .+|...
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  150 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF  150 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence            9999886656778888888999998888887 445433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=4.5e-14  Score=143.94  Aligned_cols=156  Identities=14%  Similarity=0.062  Sum_probs=115.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCC---CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI---IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI  149 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~---~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~  149 (366)
                      .+++.|+|++|.+.+..+..+.++++|++|+|++|.+++.   .+..+..+++|++|+|++|++++..|..+..+++|+.
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            4688899999988887787888888899999998888762   3356788888888888888888777888888888888


Q ss_pred             EEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccc-------cccccccccCccCch----hh--------hcc
Q 017764          150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDED----TV--------QRR  210 (366)
Q Consensus       150 L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~-------c~~~~~~~~~~~~~~----~~--------~~~  210 (366)
                      |+|++|++++..|..+.++++| +|++++|++++.+|....       -....+.|.+.+...    +.        ...
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~  583 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTE  583 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGG
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCC
Confidence            8888888888888888888888 888888888876664211       112222222222211    11        124


Q ss_pred             cccccccccccCcccCCCC
Q 017764          211 LLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       211 ~~~c~~~~~~~g~~l~~~~  229 (366)
                      ...|..+..++|..+...+
T Consensus       584 ~~~C~~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          584 DTLCENPPLLRGVRLSDVT  602 (606)
T ss_dssp             GCBEEESGGGTTCBGGGCC
T ss_pred             CCeeCCchHhCCCeeeeee
Confidence            5679999999999886654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=1.7e-13  Score=127.71  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus       100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence            57899999999999776677999999999999999999877777899999999999999999544445688999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERS  195 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~  195 (366)
                      ++|+++ .+|..+..+.+|+.|+|++|+|.      |.|....
T Consensus       180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~------C~c~~~~  215 (290)
T 1p9a_G          180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL------CNCEILY  215 (290)
T ss_dssp             CSSCCC-CCCTTTTTTCCCSEEECCSCCBC------CSGGGHH
T ss_pred             CCCcCC-ccChhhcccccCCeEEeCCCCcc------CcCccHH
Confidence            999999 88999999999999999999986      6665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=7e-14  Score=148.56  Aligned_cols=115  Identities=20%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             CEEEEEccCCCCCCcC-cccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc--cCCCCCCcEE
Q 017764           74 KVVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND--LGINHSLTIL  150 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~--l~~l~~L~~L  150 (366)
                      +++.|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|..  +.++++|++|
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L  128 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL  128 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence            4455555555444444 445666777777777777777666777777777777777777777655554  6677777777


Q ss_pred             EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCcc
Q 017764          151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      +|++|.+++..+ ..|+++++|++|++++|.+++..+..
T Consensus       129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A          129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            777777765544 46777777777777777777666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.1e-13  Score=132.80  Aligned_cols=110  Identities=21%  Similarity=0.175  Sum_probs=98.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.|++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            57999999999999777778999999999999999999877778999999999999999999877889999999999999


Q ss_pred             cCCCCCCCChhh-h---hCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPE-I---YKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~-l---~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|+|++ +|.. |   ..+++|++|+|++|+|++
T Consensus       144 ~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          144 SQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9999995 5554 4   579999999999999985

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=8.4e-14  Score=121.97  Aligned_cols=108  Identities=11%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+.  ....+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            57899999999765  3347899999999999999999888889999999999999999999878888999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|.+.+.++ .+..+++|++|++++|++++
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            9998444776 68999999999999999986

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.2e-13  Score=117.57  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=96.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L  150 (366)
                      .+++.|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+++ ++  ..+..+++|++|
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence            5799999999999965  779999999999999999998888888889999999999999995 44  688999999999


Q ss_pred             EccCCCCCCCCh---hhhhCCCCCCEEeccCCCCc
Q 017764          151 LLDNNDFVGSLS---PEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       151 ~L~~N~l~g~iP---~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999996554   47899999999999999886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.46  E-value=1.9e-13  Score=141.25  Aligned_cols=112  Identities=24%  Similarity=0.236  Sum_probs=54.5

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            45555555555554444445555555555555555554444444555555555555555542222234444555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      +|++++..|..|+++++|++|++++|.+++..
T Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  137 (680)
T 1ziw_A          106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK  137 (680)
T ss_dssp             SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCccChhHccccCCCCEEECCCCcccccC
Confidence            55544333344444444555555544444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=5.7e-13  Score=114.43  Aligned_cols=109  Identities=21%  Similarity=0.239  Sum_probs=94.5

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      .+.++++++++. .+|..+.  ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467999999998 5665443  7999999999999977777789999999999999999966556689999999999999


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++++..+..+..+++|++|++++|++++..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence            99997777778999999999999999986544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.45  E-value=2.3e-13  Score=131.48  Aligned_cols=111  Identities=18%  Similarity=0.232  Sum_probs=62.5

Q ss_pred             CEEEEEccCCCCCCcCccc-ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      +++.|++++|.++. +|.. +.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|+|
T Consensus        46 ~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45566666666553 3333 455666666666666665554455566666666666666666544555556666666666


Q ss_pred             cCCCCCCCChhh-hhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~-l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.++ .+|.. |.++++|++|++++|++++..+
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            666665 33332 4555666666666666554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=6e-14  Score=131.79  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=55.0

Q ss_pred             CEEEEEccCCCCCCcCcccc--cCCCCcCEEEccCCCCCCCCccccCCC-----CCCCeeeccCCcCCCCCCcccCCCCC
Q 017764           74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGINHS  146 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P~~l~~l-----~~L~~L~Ls~N~l~g~lP~~l~~l~~  146 (366)
                      +++.|+|++|.+++.+|..+  ..+++|++|+|++|.+++. |..+..+     ++|++|+|++|++++..+..++.+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            45555555555555555543  4555555555555555544 4444444     55555555555555444445555555


Q ss_pred             CcEEEccCCCCCCC--Chhhh--hCCCCCCEEeccCCCCc
Q 017764          147 LTILLLDNNDFVGS--LSPEI--YKLQVLSESQVDEGQLS  182 (366)
Q Consensus       147 L~~L~L~~N~l~g~--iP~~l--~~l~~L~~L~l~~N~l~  182 (366)
                      |++|+|++|++.|.  ++..+  ..+++|++|++++|+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            55555555555443  22222  44555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.45  E-value=3.4e-13  Score=127.53  Aligned_cols=122  Identities=22%  Similarity=0.317  Sum_probs=107.9

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  131 (366)
                      |.|..+.|..           .+++.|+|++|.+.+..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            6899999961           36899999999999777778999999999999999999888999999999999999999


Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc--cCCc
Q 017764          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKK  187 (366)
Q Consensus       132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g--~iP~  187 (366)
                      +++ .+|..+.  ++|++|+|++|.+++..+..|.++++|++|++++|.++.  ..+.
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  167 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG  167 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence            999 7887765  799999999999996666678999999999999999963  4443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.45  E-value=4.6e-13  Score=126.38  Aligned_cols=118  Identities=24%  Similarity=0.371  Sum_probs=100.7

Q ss_pred             CCCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      .|.|..+.|..           ..++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            46899999961           3688999999999977666899999999999999999988899999999999999999


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            9998 6776654  68888888888888776667778888888888888775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=138.73  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=81.3

Q ss_pred             CCEEEEEccCCCCCCcCc-ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC-CCCCcccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~-g~lP~~l~~l~~L~~L  150 (366)
                      .+++.|+|++|.+.+..+ ..+.++++|++|++++|.+.+.+|..+.++++|++|+|++|.+. +.+|..+..+++|+.|
T Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            356777777777776554 34667777777777777777767777777777777777777776 4566677777777777


Q ss_pred             EccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       151 ~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      +|++|++++..|..+..+++|++|++++|++++..+.
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            7777777766677777777777777777777765553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=3.5e-13  Score=115.53  Aligned_cols=100  Identities=25%  Similarity=0.257  Sum_probs=88.6

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN  131 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  131 (366)
                      |.|+.+.|+.           .+++.|+|++|.|++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            6788888861           36899999999999888888999999999999999999777777899999999999999


Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCCCCCCCh
Q 017764          132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLS  162 (366)
Q Consensus       132 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP  162 (366)
                      +|++..+..|..+++|++|+|++|.|+...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9997656679999999999999999986543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=7.9e-14  Score=116.34  Aligned_cols=105  Identities=17%  Similarity=0.088  Sum_probs=93.7

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC-CCcccCCCCCCcEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTIL  150 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-lP~~l~~l~~L~~L  150 (366)
                      ..+++.|+|++|.+++.  ..+.++++|++|+|++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus        41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            35899999999999965  7799999999999999999988998888899999999999999962 34789999999999


Q ss_pred             EccCCCCCCCCh---hhhhCCCCCCEEeccC
Q 017764          151 LLDNNDFVGSLS---PEIYKLQVLSESQVDE  178 (366)
Q Consensus       151 ~L~~N~l~g~iP---~~l~~l~~L~~L~l~~  178 (366)
                      ++++|.+++..+   ..+..+++|++|++++
T Consensus       119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999997655   4789999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.43  E-value=4.1e-13  Score=117.59  Aligned_cols=110  Identities=16%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+. .++ .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|++|+|
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            46899999999998 666 6999999999999999776  3457899999999999999999888889999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.+++..+..+..+++|++|++++|++.+.+|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            9999998889999999999999999999555565

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.43  E-value=1.5e-13  Score=137.56  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=90.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            47888888888888777677888888888888888888777888888888888888888888 57766  7888888888


Q ss_pred             cCCCCCC-CChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|.+++ .+|..|+++++|++|++++|++++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            8888886 577888888888888888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=2.3e-13  Score=134.89  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=103.3

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            56777777777774333457778888888888888887666777788888888888888887777778888888888888


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccccccccccccCccCchhhhcccccccccccccCcccCCCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      +|++++..+..|..+++|+.|++++|+|.      +.|....+...  ............|..+..++|..+...+
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------c~c~~~~~~~~--~~~~~~~~~~~~C~~p~~~~g~~l~~~~  372 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLA------CDCRLLWVFRR--RWRLNFNRQQPTCATPEFVQGKEFKDFP  372 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEE------CSGGGHHHHTT--TTSSCCTTCCCBEEESGGGTTCBGGGSC
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCcc------CccchHhHHhh--hhccccCccCceeCCchHHcCCchhhCc
Confidence            88888655556777788888888888876      44443322100  0001112345678888889888885544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=2.7e-13  Score=135.44  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=103.0

Q ss_pred             CCCcceeeeC-CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCc
Q 017764           62 PCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPN  139 (366)
Q Consensus        62 ~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~  139 (366)
                      .|.+.++.|. ..+++.|+|++|.+++..+..+.++++|++|+|++|.+++.+|..+. .+++|++|+|++|.|++. + 
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-  185 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-  185 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-
Confidence            3556666665 45789999999999988888899999999999999999998888876 799999999999999864 3 


Q ss_pred             ccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       140 ~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      .+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.|++ +|.
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~  231 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence            34468999999999999996 45568899999999999999996 554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=5.1e-13  Score=136.51  Aligned_cols=139  Identities=14%  Similarity=0.109  Sum_probs=113.1

Q ss_pred             CCCCCCCCCCCCCCCCCC----cceeeeC------------------CCCEEEEEccCCCCCCcCcccccCCCCcCEEEc
Q 017764           47 YGALTSWRSCDTENNPCS----WFGVECS------------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIIL  104 (366)
Q Consensus        47 ~~~l~~W~~~~~~~~~C~----w~Gv~C~------------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~L  104 (366)
                      +..+.+|.   .+.+||.    |.++.|+                  ..+++.|++++|.+....+..+.++++|++|+|
T Consensus         6 ~~~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L   82 (597)
T 3oja_B            6 RYNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL   82 (597)
T ss_dssp             -----CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEEC
T ss_pred             cccccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC
Confidence            34467787   5566663    7666554                  035788999999998544445788999999999


Q ss_pred             cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          105 RNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       105 s~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|.+++..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|.+++.
T Consensus        83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            99999988888999999999999999999987777889999999999999999955555579999999999999999988


Q ss_pred             CCcc
Q 017764          185 AKKE  188 (366)
Q Consensus       185 iP~~  188 (366)
                      .|..
T Consensus       163 ~~~~  166 (597)
T 3oja_B          163 EDDT  166 (597)
T ss_dssp             CTTT
T ss_pred             Chhh
Confidence            7753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.41  E-value=8.6e-13  Score=127.40  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=100.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|.. +..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            47899999999999777778999999999999999999888888999999999999999999 56655 68999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      |++|.+++..+..+..+++|++|++++|++++.
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            999999987788899999999999999999853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=6.4e-13  Score=134.12  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..++++++|++|+|
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            46777788777777665666777788888888888877766677778888888888888877544445778888888888


Q ss_pred             cCCCCCC-CChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g-~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|.+++ .+|..|+++++|++|++++|++++..+.
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            8888876 4688888888888888888888765554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.40  E-value=3.9e-13  Score=121.12  Aligned_cols=112  Identities=14%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC-CCCCCccccCCCCCCCeeeccC-CcCCCCCCcccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~~P~~l~~l~~L~~L~Ls~-N~l~g~lP~~l~~l~~L~~L  150 (366)
                      .+++.|+|++|++++..+..+.++++|++|+|++|. +++..+..|.++++|++|+|++ |++++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478899999999986666678899999999999997 8766666788999999999998 89986555678888999999


Q ss_pred             EccCCCCCCCChhhhhCCCCCC---EEeccCC-CCcccCC
Q 017764          151 LLDNNDFVGSLSPEIYKLQVLS---ESQVDEG-QLSSAAK  186 (366)
Q Consensus       151 ~L~~N~l~g~iP~~l~~l~~L~---~L~l~~N-~l~g~iP  186 (366)
                      +|++|.+++ +|. +..+.+|+   +|++++| ++++..+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~  148 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV  148 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc
Confidence            999999885 676 77888888   8999888 7765444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=1.1e-13  Score=147.11  Aligned_cols=122  Identities=15%  Similarity=0.138  Sum_probs=106.8

Q ss_pred             CCcceeeeC---CCCEEEEEccCCCCCC-----------------cCccccc--CCCCcCEEEccCCCCCCCCccccCCC
Q 017764           63 CSWFGVECS---DGKVVNLNLKDLCLEG-----------------TLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL  120 (366)
Q Consensus        63 C~w~Gv~C~---~~~v~~L~L~~n~l~g-----------------~~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~l~~l  120 (366)
                      +...|+.-.   ..+++.|+|++|.|+|                 .+|..++  +|++|++|+|++|.+.+.+|..|.+|
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            445554322   4689999999999998                 4899988  99999999999999999999999999


Q ss_pred             CCCCeeeccCCc-CCC-CCCcccCCCC-------CCcEEEccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764          121 EELEVLDFGHNN-FSG-PLPNDLGINH-------SLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l~-------~L~~L~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|++|+|++|+ ++| .+|..++.+.       +|++|+|++|+++ .+|.  .+.++++|+.|+|++|+++ .||
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            999999999998 998 8887666554       9999999999999 8888  8999999999999999998 887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4.9e-13  Score=114.94  Aligned_cols=107  Identities=20%  Similarity=0.269  Sum_probs=90.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCC-CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L  150 (366)
                      .+++.|+|++|.++ .++. +..+. +|++|+|++|.+++.  ..+..+++|++|+|++|++++ +|.. +..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEE
Confidence            47899999999998 4554 55555 999999999999965  678999999999999999995 5544 4889999999


Q ss_pred             EccCCCCCCCChh--hhhCCCCCCEEeccCCCCcccCC
Q 017764          151 LLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       151 ~L~~N~l~g~iP~--~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|++|.++ .+|.  .+..+++|++|++++|+++ .+|
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~  129 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKK  129 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcH
Confidence            99999996 6776  7899999999999999997 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.39  E-value=2.7e-13  Score=136.41  Aligned_cols=118  Identities=18%  Similarity=0.192  Sum_probs=105.5

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCCcccCCCCCCcEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL  150 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L  150 (366)
                      ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..++++++|++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            3589999999999998888889999999999999999998877779999999999999999986 467789999999999


Q ss_pred             EccCCCCCCCCh-hhhhCCCCCCEEeccCCCCcccCCccc
Q 017764          151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKEQ  189 (366)
Q Consensus       151 ~L~~N~l~g~iP-~~l~~l~~L~~L~l~~N~l~g~iP~~~  189 (366)
                      +|++|.+.+.+| ..+.++++|++|++++|++++.+|...
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            999999666666 579999999999999999998877543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=2.5e-13  Score=127.55  Aligned_cols=113  Identities=19%  Similarity=0.152  Sum_probs=95.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCC-----CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC--CCccc--CC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDL--GI  143 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--lP~~l--~~  143 (366)
                      .+++.|+|++|.+++. |..+..+     ++|++|+|++|.+++..+..|..+++|++|+|++|++.+.  ++..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            5789999999999976 7777777     8999999999999988889999999999999999998765  34444  78


Q ss_pred             CCCCcEEEccCCCCCC--CCh-hhhhCCCCCCEEeccCCCCcccCC
Q 017764          144 NHSLTILLLDNNDFVG--SLS-PEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       144 l~~L~~L~L~~N~l~g--~iP-~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +++|++|+|++|++++  .++ ..+.++++|++|++++|++++.+|
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            8999999999999983  233 234688999999999999998775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=8.2e-13  Score=136.52  Aligned_cols=112  Identities=17%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++..|..+.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..++++++|++|+|+
T Consensus        50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  129 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS  129 (680)
T ss_dssp             TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence            45566666666655555555555666666666665554333345555556666666555554444455555555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      +|.+++..+..+.++++|++|++++|.+++..
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A          130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             CCcccccCchhhcccccCCEEEccCCcccccC
Confidence            55555555555555555555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.38  E-value=4.3e-13  Score=136.24  Aligned_cols=118  Identities=27%  Similarity=0.357  Sum_probs=90.5

Q ss_pred             CCCCCCCCCCCCC-----Cccee-eeCCCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCC
Q 017764           51 TSWRSCDTENNPC-----SWFGV-ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE  124 (366)
Q Consensus        51 ~~W~~~~~~~~~C-----~w~Gv-~C~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~  124 (366)
                      .+|.   .+.++|     .|.|+ .|..++++.|+|++|+|++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|+
T Consensus        34 ~~W~---~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~  103 (571)
T 3cvr_A           34 DKWE---KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE  103 (571)
T ss_dssp             HHHH---TTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred             HHHh---ccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence            3565   456677     69999 7876789999999999986 777663  78899999999888 577   4578888


Q ss_pred             eeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          125 VLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       125 ~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      +|+|++|+|++ +|. +..  +|++|+|++|+|++ +|.   .+++|+.|++++|+|++ +|.
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~  157 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE  157 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence            88888888886 776 554  78888888888875 665   56777777777777776 554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=6.8e-13  Score=126.49  Aligned_cols=117  Identities=22%  Similarity=0.220  Sum_probs=100.5

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTI  149 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~  149 (366)
                      ..+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+|.  .+..+++|++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence            357999999999999877778999999999999999999655555899999999999999999 5665  6889999999


Q ss_pred             EEccCCC-CCCCChhhhhCCCCCCEEeccCCCCcccCCccc
Q 017764          150 LLLDNND-FVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ  189 (366)
Q Consensus       150 L~L~~N~-l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~  189 (366)
                      |++++|+ +.+..+..+.++++|++|++++|++++..|...
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            9999995 665556788999999999999999998777543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=7.1e-14  Score=146.21  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+|+.|+|++|.|+ .+|..|.+|++|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|+.+++|++|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            357999999999999 89999999999999999999999 78999999999999999999998 8999999999999999


Q ss_pred             ccCCCCCCCChhhhhCCC-CCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|.|+|.+|..+..+. .+..|+|++|.++|.+|.
T Consensus       323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            999999999988775542 122356777777777765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=5e-13  Score=114.85  Aligned_cols=106  Identities=20%  Similarity=0.202  Sum_probs=93.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc--ccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L  150 (366)
                      .+++.|+|++|.+++.  ..+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|.  .+..+++|+.|
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            3799999999999964  67999999999999999999654455589999999999999996 6776  78899999999


Q ss_pred             EccCCCCCCCChhh----hhCCCCCCEEeccCCCCc
Q 017764          151 LLDNNDFVGSLSPE----IYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       151 ~L~~N~l~g~iP~~----l~~l~~L~~L~l~~N~l~  182 (366)
                      +|++|.++ .+|..    +..+++|+.||+++|.+.
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999998 66764    899999999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=1.1e-12  Score=118.03  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=98.5

Q ss_pred             CCEEEEEccCCC-CCCcCcccccCCCCcCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCc--
Q 017764           73 GKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT--  148 (366)
Q Consensus        73 ~~v~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~--  148 (366)
                      .+++.|+|++|. +++..+..+.++++|++|+|++ |.+++..+..|.++++|++|++++|++++ +|. +..+.+|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            579999999997 8755555799999999999998 99997777789999999999999999995 786 88888888  


Q ss_pred             -EEEccCC-CCCCCChhhhhCCCCCC-EEeccCCCCcccCCc
Q 017764          149 -ILLLDNN-DFVGSLSPEIYKLQVLS-ESQVDEGQLSSAAKK  187 (366)
Q Consensus       149 -~L~L~~N-~l~g~iP~~l~~l~~L~-~L~l~~N~l~g~iP~  187 (366)
                       +|++++| .+++..+..|.++++|+ +|++++|+++ .+|.
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence             9999999 99866666789999999 9999999998 6664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.34  E-value=1.8e-12  Score=129.69  Aligned_cols=84  Identities=23%  Similarity=0.276  Sum_probs=42.3

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcc-cCCCCCCcEE
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL  150 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L  150 (366)
                      +++.|+|++|.+++.+|..+.++++|++|+|++|.+++  .+|..+..+++|++|+|++|.+++.+|.. +..+++|+.|
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            45555555555555555555555555555555555554  33444555555555555555555434432 3333333333


Q ss_pred             EccCCCC
Q 017764          151 LLDNNDF  157 (366)
Q Consensus       151 ~L~~N~l  157 (366)
                      +|++|.+
T Consensus       405 ~Ls~N~l  411 (520)
T 2z7x_B          405 NMSSNIL  411 (520)
T ss_dssp             ECCSSCC
T ss_pred             ECcCCCC
Confidence            3333333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=4.6e-12  Score=108.99  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.|++..|..|.++++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            36899999999999888888999999999999999999766666789999999999999999654455999999999999


Q ss_pred             cCCCCCCC
Q 017764          153 DNNDFVGS  160 (366)
Q Consensus       153 ~~N~l~g~  160 (366)
                      ++|.|...
T Consensus       113 ~~N~~~c~  120 (174)
T 2r9u_A          113 YNNPWDCE  120 (174)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCcccc
Confidence            99999844

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.32  E-value=6.7e-13  Score=124.42  Aligned_cols=114  Identities=12%  Similarity=0.024  Sum_probs=74.7

Q ss_pred             CCEEEEEccCCCCCCcCc----ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC--CC--cccCCC
Q 017764           73 GKVVNLNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LP--NDLGIN  144 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--lP--~~l~~l  144 (366)
                      .+++.|+|++|.+++..+    ..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+.  ++  ..+..+
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            356777777777776544    2345677777777777777766667777777777777777776542  21  223566


Q ss_pred             CCCcEEEccCCCCCCCChh----hhhCCCCCCEEeccCCCCcccCCc
Q 017764          145 HSLTILLLDNNDFVGSLSP----EIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       145 ~~L~~L~L~~N~l~g~iP~----~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++|+|++|+++ .++.    .+..+++|++|+|++|++++.+|.
T Consensus       197 ~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          197 PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            77777777777775 3333    245667777777777777776554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.32  E-value=2e-12  Score=130.89  Aligned_cols=93  Identities=14%  Similarity=0.102  Sum_probs=44.3

Q ss_pred             cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC--CCCcccCCCCCCcEEEccCCCCCCCChhh-hhCCCC
Q 017764           94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQV  170 (366)
Q Consensus        94 ~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~L~~N~l~g~iP~~-l~~l~~  170 (366)
                      ..+++|++|+|++|.+++.+|..+.++++|++|+|++|++++  .+|..+..+++|++|+|++|++++.+|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            344445555555555554444455555555555555555543  11233444555555555555555434332 344445


Q ss_pred             CCEEeccCCCCcccCC
Q 017764          171 LSESQVDEGQLSSAAK  186 (366)
Q Consensus       171 L~~L~l~~N~l~g~iP  186 (366)
                      |++|++++|++++.+|
T Consensus       430 L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCEEECCSSCCCGGGG
T ss_pred             CCEEECCCCCCCcchh
Confidence            5555555555544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.32  E-value=5.6e-12  Score=118.91  Aligned_cols=111  Identities=16%  Similarity=0.246  Sum_probs=97.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.++ .+|..+.  ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|
T Consensus       171 ~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            57899999999998 4666554  78999999999999888889999999999999999999777778889999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            999999 8888999999999999999999865443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=3.9e-12  Score=119.61  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=86.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC-CCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|.+++ ++ ....+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE-CCCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc-cccccccCCEEE
Confidence            4578888888888876666788888899999999988877666663 68888888888888884 33 334578888889


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|++++ +|..+..+++|++|++++|++++ +|.
T Consensus       198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~  231 (317)
T 3o53_A          198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK  231 (317)
T ss_dssp             CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             CCCCcCCc-chhhhcccCcccEEECcCCcccc-hhh
Confidence            98888884 55568888889999999888884 454

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=121.80  Aligned_cols=109  Identities=21%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             CEEEEEccCCCCCCcCcccc--cCCCCcCEEEccCCCCCCCCc----cccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764           74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGPLPNDLGINHSL  147 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P----~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L  147 (366)
                      +++.|+|++|.+.+..|..+  .++++|++|+|++|.+++..+    ..+..+++|++|+|++|++.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            48889999999988888887  888999999999999987655    345578899999999999987777888889999


Q ss_pred             cEEEccCCCCCCC--Chh--hhhCCCCCCEEeccCCCCc
Q 017764          148 TILLLDNNDFVGS--LSP--EIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       148 ~~L~L~~N~l~g~--iP~--~l~~l~~L~~L~l~~N~l~  182 (366)
                      ++|+|++|++.+.  ++.  .+..+++|++|++++|+++
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            9999999988753  222  2367889999999999886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=3.4e-12  Score=120.57  Aligned_cols=109  Identities=20%  Similarity=0.294  Sum_probs=97.7

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|++++|.+++ +|..+.  ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus       173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence            68899999999985 676554  789999999999998888899999999999999999998777789999999999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|+++ .+|..+..+++|++|++++|++++..+
T Consensus       250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence            99999 889999999999999999999986544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.29  E-value=1.3e-11  Score=114.88  Aligned_cols=106  Identities=24%  Similarity=0.350  Sum_probs=83.1

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++. +. +.++++|++|+|++|.+++ ++ .+..+++|++|+|++|++++ + ..+..+++|+.|+|
T Consensus        68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            5788888888888854 33 8888888888888888875 33 48888888888888888885 3 46778888888888


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|++++.  ..+..+++|++|++++|++++..+
T Consensus       142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            88888854  567888888888888888876554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=2.8e-12  Score=128.05  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=32.0

Q ss_pred             CCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhh-CCCCCCEEeccCCCCccc
Q 017764          122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY-KLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       122 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~-~l~~L~~L~l~~N~l~g~  184 (366)
                      +|++|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.|++.
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            344444444444444444455555555555555555555554443 455555555555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=5.6e-12  Score=118.50  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=94.5

Q ss_pred             CCEEEEEccCCCCCCcCcccc-cCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|.+++..+..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|++++ +|..+..+++|+.|+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS  220 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence            579999999999998777766 4799999999999999865 3 34469999999999999994 666799999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |++|.++ .+|..+..+++|+.|++++|++.
T Consensus       221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            9999999 67888999999999999999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.27  E-value=2.1e-11  Score=111.84  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++. +. +.++++|++|+|++|.+++ ++. +.. .+|++|+|++|++++ ++ .+..+++|+.|+|
T Consensus        63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence            4677777777777643 33 6777777777777777764 333 222 677777777777764 33 4667777777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|++++ ++ .+..+++|++|++++|++++.
T Consensus       136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            7777774 33 567777777777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.26  E-value=2.4e-11  Score=111.43  Aligned_cols=103  Identities=26%  Similarity=0.365  Sum_probs=88.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.++ .++ .+..+++|++|+|++|.+++. +. +..+++|++|+|++|++++ +|... . .+|+.|+|
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEEC
T ss_pred             CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEc
Confidence            57899999999998 466 789999999999999999964 44 9999999999999999995 55433 3 89999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|++++ ++ .+..+++|+.|++++|++++.
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCCcCCCC
Confidence            9999995 44 689999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=9.6e-12  Score=126.45  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCC-CcccCCCCCCcEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLGINHSLTIL  150 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~l-P~~l~~l~~L~~L  150 (366)
                      ..+++.|+|++|.|+ .+|..+++|++|++|+|++|.|++ +| .++.|++|++|+|++|+|++.. |..++.+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            357999999999999 889999999999999999999997 77 8999999999999999999876 9999999999999


Q ss_pred             EccCCCCCCCChh---hhhCCCCCCEEec
Q 017764          151 LLDNNDFVGSLSP---EIYKLQVLSESQV  176 (366)
Q Consensus       151 ~L~~N~l~g~iP~---~l~~l~~L~~L~l  176 (366)
                      +|++|.|++..|.   .+..+++|+.|++
T Consensus       539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          539 NLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999976553   3455899999975

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=1.9e-11  Score=113.73  Aligned_cols=104  Identities=24%  Similarity=0.324  Sum_probs=91.9

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.+++ ++ .+.++++|++|+|++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|+.|+
T Consensus        89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence            4579999999999986 44 599999999999999999863  5688999999999999999964  6788999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      |++|.+++..+  +..+++|++|++++|++++
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            99999996544  8999999999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.25  E-value=2.2e-11  Score=115.36  Aligned_cols=108  Identities=19%  Similarity=0.305  Sum_probs=65.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++. +. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|+.|+|
T Consensus       221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence            3456666666666532 22 5666666666666666654 2 345666666666666666664 3 34556666666666


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.+++..+..+..+++|++|++++|++++..|
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            6666666666666666666666666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.24  E-value=3.3e-11  Score=112.92  Aligned_cols=103  Identities=26%  Similarity=0.430  Sum_probs=66.6

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+.+ ++. +.++++|++|+|++|.+++ ++ .+..+++|++|+|++|++++ ++ .+..+++|++|+|
T Consensus        63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEEC
Confidence            466777777777764 333 6677777777777777764 33 46667777777777777764 33 2666667777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|.+++. +. +..+++|++|++++|++++
T Consensus       137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CSSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred             CCCccCcC-cc-ccCCCCccEEEccCCcCCC
Confidence            77766643 32 6666667777776666664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.24  E-value=2.4e-11  Score=113.87  Aligned_cols=107  Identities=22%  Similarity=0.352  Sum_probs=85.0

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.+++ ++ .+.++++|++|+|++|.+++ ++. +..+++|++|++++|++++ ++. +..+++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS  157 (308)
T ss_dssp             CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence            3578899999999885 33 68888999999999999886 443 8888899999999998885 443 77888888888


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|.+++ ++. +..+++|+.|++++|++++..+
T Consensus       158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          158 IGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence            88888884 444 7888888888888888876443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.23  E-value=5.4e-11  Score=121.80  Aligned_cols=106  Identities=23%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+|+.|+|++|.|.+..+  +..|++|+.|+|++|.|++ ++ .+..|++|+.|+|++|++.+ + ..+..+++|+.|+|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            467777887777775433  7777777777777777764 33 56777777777777777774 3 34666777777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.+++.  ..+..+++|+.|+|++|.|++..|
T Consensus       139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            77777743  456677777777777777766555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.22  E-value=1.7e-11  Score=124.48  Aligned_cols=93  Identities=25%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.|++ +|.   .+++|++|+|++|.|++ +|.   .+++|++|+|++|+|++ +|. +.  ++|+.|+|+
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            55666666666664 444   45666666666666664 444   45566666666666664 554 43  555555555


Q ss_pred             CCCCCCCChhhhhCCCCC-------CEEeccCCCCc
Q 017764          154 NNDFVGSLSPEIYKLQVL-------SESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L-------~~L~l~~N~l~  182 (366)
                      +|+|+ .+|. +..  +|       +.|+|++|+|+
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence            55555 4444 322  34       55555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.22  E-value=1.7e-11  Score=116.05  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=92.3

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.+++ + +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus       242 l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             CCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            3579999999999986 3 4689999999999999999964  4688999999999999999988888899999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      |++|.+++..|  +..+++|+.|++++|.|+
T Consensus       318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          318 LSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999997655  889999999999999985

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.19  E-value=5.1e-11  Score=121.93  Aligned_cols=104  Identities=24%  Similarity=0.327  Sum_probs=78.8

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+|+.|+|++|.|.+ ++ .+..|++|++|+|++|.+++ + ..+..|++|+.|+|++|++++.  ..+..+++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            3578888888888875 33 67788888888888888875 3 3577788888888888888753  5677788888888


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      |++|.+++..|  +..+++|+.|+|++|+|++
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            88888876554  7777888888888887775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=1.1e-13  Score=121.39  Aligned_cols=110  Identities=17%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +| .+..+++|++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            3578999999999986 67 8899999999999999998 678877788999999999999985 55 678889999999


Q ss_pred             ccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcccCCc
Q 017764          152 LDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       152 L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      |++|++++ ++  ..+..+++|++|++++|++++.+|.
T Consensus       122 l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          122 MSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999984 34  4788999999999999999877653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=1.4e-13  Score=120.65  Aligned_cols=105  Identities=24%  Similarity=0.375  Sum_probs=91.2

Q ss_pred             CEEEEEccCCCCCCcCcc------cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764           74 KVVNLNLKDLCLEGTLAP------EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL  147 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~------~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L  147 (366)
                      +++.++|+++.+.|.+|.      .+.++++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            455556666666666665      89999999999999999996 77 8999999999999999999 788878788999


Q ss_pred             cEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       148 ~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|+|++|++++ +| .+..+++|++|++++|++++
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence            999999999995 56 68899999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.18  E-value=8.6e-11  Score=116.29  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++. +  +..+++|++|+|++|.+++. +  ++++++|++|++++|++++ ++  ++.+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            3556666666666542 2  55666666666666666542 2  5566666666666666664 33  556666666666


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      ++|++++ ++  ++.+++|++|++++|++.+.+
T Consensus       135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred             CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence            6666664 22  556666666666666555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=6e-11  Score=117.37  Aligned_cols=104  Identities=21%  Similarity=0.286  Sum_probs=77.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|+|++|++++..+  +..+++|+.|+|
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            468888888888876543  7788888888888888875433  7778888888888888875333  677788888888


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|++++..|  +..+++|+.|++++|++++.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            8888876554  66777888888888877764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.15  E-value=7e-11  Score=116.85  Aligned_cols=106  Identities=22%  Similarity=0.279  Sum_probs=92.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+++..+  +..+++|++|+|++|++++..|  +..+++|+.|++
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence            578999999999986433  8899999999999999997544  7899999999999999997655  778999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.+++.  ..+.++++|+.|++++|++++.+|
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            99999965  478899999999999999998877

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=6.9e-11  Score=112.65  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCcc-ccCCCCCCCe-eecc
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEV-LDFG  129 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~-L~Ls  129 (366)
                      |.|..|.|+.           .+++.|+|++|+|+..-+..|.+|++|++|+|++|.+.+.+|. .|.++++|++ +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            6888999961           3688999999999843334689999999999999998776664 5778888775 5667


Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccC
Q 017764          130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE  178 (366)
Q Consensus       130 ~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~  178 (366)
                      .|+++...|..|..+++|++|++++|++++..+..+....++..|++.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence            7888866677788899999999999988855444444444555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.11  E-value=3.8e-10  Score=111.65  Aligned_cols=84  Identities=19%  Similarity=0.226  Sum_probs=49.6

Q ss_pred             ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCC
Q 017764           93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS  172 (366)
Q Consensus        93 l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~  172 (366)
                      +..+++|++|++++|.+++ +|  +..+++|+.|++++|++++.   .++.+++|+.|+|++|++++ +|  +..+++|+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            3444555555555555554 33  55555566666666665542   35566666677777777665 44  66667777


Q ss_pred             EEeccCCCCcccC
Q 017764          173 ESQVDEGQLSSAA  185 (366)
Q Consensus       173 ~L~l~~N~l~g~i  185 (366)
                      .|++++|++++..
T Consensus       237 ~L~l~~N~l~~~~  249 (457)
T 3bz5_A          237 YFDCSVNPLTELD  249 (457)
T ss_dssp             EEECCSSCCSCCC
T ss_pred             EEEeeCCcCCCcC
Confidence            7777777776643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=9.6e-12  Score=119.94  Aligned_cols=111  Identities=20%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             CCEEEEEccCCCCC-CcCc---ccccCCCCcCEEEccCCCCC--C---CCccccCCCCCCCeeeccCCcCC----CCCCc
Q 017764           73 GKVVNLNLKDLCLE-GTLA---PEIQSLTHIKSIILRNNSFS--G---IIPEGFGELEELEVLDFGHNNFS----GPLPN  139 (366)
Q Consensus        73 ~~v~~L~L~~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~~P~~l~~l~~L~~L~Ls~N~l~----g~lP~  139 (366)
                      .+++.|+|++|.++ +.++   ..+..+++|++|+|++|.++  |   .++..+..+++|++|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45666666666665 2333   24455566666666666665  2   23335556666666666666664    34555


Q ss_pred             ccCCCCCCcEEEccCCCCCCC----Chhhhh--CCCCCCEEeccCCCCcc
Q 017764          140 DLGINHSLTILLLDNNDFVGS----LSPEIY--KLQVLSESQVDEGQLSS  183 (366)
Q Consensus       140 ~l~~l~~L~~L~L~~N~l~g~----iP~~l~--~l~~L~~L~l~~N~l~g  183 (366)
                      .+..+++|++|+|++|.+++.    ++..+.  .+++|++|+|++|.+++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            555666666666666666543    344442  25666666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.11  E-value=1.5e-11  Score=115.94  Aligned_cols=110  Identities=18%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCC-CccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|++++|.+.+..+. +.++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            3566666666666654433 45566666666666666544 555566666666666666666655555666666666666


Q ss_pred             ccCC-CCCCC-ChhhhhCCCCCCEEeccCC-CCcc
Q 017764          152 LDNN-DFVGS-LSPEIYKLQVLSESQVDEG-QLSS  183 (366)
Q Consensus       152 L~~N-~l~g~-iP~~l~~l~~L~~L~l~~N-~l~g  183 (366)
                      |++| .+++. ++..+.++++|++|++++| .+++
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            6666 45542 4555566666666666666 5553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.10  E-value=1e-11  Score=117.01  Aligned_cols=118  Identities=13%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             CCCcceeeeCCCCEEEEEccCCCCCCcCcccccCC--CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC-CC
Q 017764           62 PCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSL--THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LP  138 (366)
Q Consensus        62 ~C~w~Gv~C~~~~v~~L~L~~n~l~g~~p~~l~~L--~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~-lP  138 (366)
                      |..|.++.|+...++.|+++++.+.   +..+..+  .+++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++
T Consensus        36 c~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           36 CKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             CHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred             HHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence            4469998887667889999999887   4557777  8999999999999987665 66899999999999999866 78


Q ss_pred             cccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCC-CCcc
Q 017764          139 NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG-QLSS  183 (366)
Q Consensus       139 ~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N-~l~g  183 (366)
                      ..+..+++|++|+|++|.+++..+..+..+++|++|++++| .+++
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            88899999999999999999888999999999999999999 6775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=3.3e-10  Score=111.98  Aligned_cols=102  Identities=29%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++ +| ++.++++|++|++++|.+++ +|..+   .+|++|++++|++++ +| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            356677777777764 55 47777777777777777764 44322   355555555555553 44 3555555555555


Q ss_pred             cCCCCCC-------------------CChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVG-------------------SLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g-------------------~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|.+++                   .+| .++.+++|++|++++|++++
T Consensus       203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          203 DNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence            5444443                   333 24555556666666655554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.4e-10  Score=110.09  Aligned_cols=87  Identities=15%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++ |.|++..+..|.+|++|++|+|++|.|++..|..|.+|++|++|+|++|+|++..+..+..+. |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            4799999996 999987778899999999999999999999999999999999999999999954444455555 99999


Q ss_pred             ccCCCCCCC
Q 017764          152 LDNNDFVGS  160 (366)
Q Consensus       152 L~~N~l~g~  160 (366)
                      |.+|.|...
T Consensus       110 l~~N~~~c~  118 (347)
T 2ifg_A          110 LSGNPLHCS  118 (347)
T ss_dssp             CCSSCCCCC
T ss_pred             eeCCCccCC
Confidence            999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=1.3e-10  Score=114.86  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=38.7

Q ss_pred             CCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc--cCCcc
Q 017764          121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKKE  188 (366)
Q Consensus       121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g--~iP~~  188 (366)
                      ++|++|++++|++++ +|..   +++|+.|+|++|+++ .+|.   .+++|++|++++|++++  .+|..
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence            466777777777764 5543   356777777777776 4555   35667777777777776  56643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=7.8e-11  Score=120.92  Aligned_cols=94  Identities=22%  Similarity=0.357  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCCCCCcceeee--------CCCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCC
Q 017764           51 TSWRSCDTENNPCSWFGVEC--------SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE  122 (366)
Q Consensus        51 ~~W~~~~~~~~~C~w~Gv~C--------~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~  122 (366)
                      ..|.   .+.++|.|.|..|        ...+++.|++++|+|+ .+|..+.  ++|++|+|++|.|+ .+|.   .+++
T Consensus        13 ~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~   82 (622)
T 3g06_A           13 SAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE   82 (622)
T ss_dssp             HHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred             HHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence            4565   4567788866432        2335677777777776 6666554  56777777777776 3554   4566


Q ss_pred             CCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCC
Q 017764          123 LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV  158 (366)
Q Consensus       123 L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~  158 (366)
                      |++|+|++|+|+ .+|.   .+++|++|+|++|+++
T Consensus        83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            677777777666 3554   4455666666666555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=3e-10  Score=116.53  Aligned_cols=81  Identities=21%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEec
Q 017764           97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV  176 (366)
Q Consensus        97 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l  176 (366)
                      ++|++|+|++|.|++ +|   ..+++|++|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            445566666666553 44   34456666666666666 4554   4456667777777766 66666667777777777


Q ss_pred             cCCCCcccCC
Q 017764          177 DEGQLSSAAK  186 (366)
Q Consensus       177 ~~N~l~g~iP  186 (366)
                      ++|+|+|.+|
T Consensus       292 ~~N~l~~~~~  301 (622)
T 3g06_A          292 EGNPLSERTL  301 (622)
T ss_dssp             CSCCCCHHHH
T ss_pred             cCCCCCCcCH
Confidence            7777766554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.02  E-value=4.6e-11  Score=115.16  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CCEEEEEccCCCCC--C---cCcccccCCCCcCEEEccCCCCC----CCCccccCCCCCCCeeeccCCcCCCC----CCc
Q 017764           73 GKVVNLNLKDLCLE--G---TLAPEIQSLTHIKSIILRNNSFS----GIIPEGFGELEELEVLDFGHNNFSGP----LPN  139 (366)
Q Consensus        73 ~~v~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~~P~~l~~l~~L~~L~Ls~N~l~g~----lP~  139 (366)
                      .+++.|+|++|.++  |   .++..+.++++|++|+|++|.++    +.++..+..+++|++|+|++|.+++.    ++.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            35666666666665  2   23335566666666666666664    44556666666666666666666543    344


Q ss_pred             cc--CCCCCCcEEEccCCCCCC----CChhhh-hCCCCCCEEeccCCCCcccC
Q 017764          140 DL--GINHSLTILLLDNNDFVG----SLSPEI-YKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       140 ~l--~~l~~L~~L~L~~N~l~g----~iP~~l-~~l~~L~~L~l~~N~l~g~i  185 (366)
                      .+  +.+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            44  336666666666666665    355555 45666666666666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.02  E-value=6.7e-11  Score=113.20  Aligned_cols=113  Identities=23%  Similarity=0.242  Sum_probs=77.2

Q ss_pred             CEEEEEccCCCCCCcCcccccCC-----CCcCEEEccCCCCCCCCccccC----CC-CCCCeeeccCCcCCCCCCccc--
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFG----EL-EELEVLDFGHNNFSGPLPNDL--  141 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~l~----~l-~~L~~L~Ls~N~l~g~lP~~l--  141 (366)
                      +++.|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+.    .+ ++|++|+|++|++++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67888888888876666556554     7788888888888766555333    33 778888888888875544333  


Q ss_pred             --CC-CCCCcEEEccCCCCCCCCh----hhhhCCC-CCCEEeccCCCCcccCC
Q 017764          142 --GI-NHSLTILLLDNNDFVGSLS----PEIYKLQ-VLSESQVDEGQLSSAAK  186 (366)
Q Consensus       142 --~~-l~~L~~L~L~~N~l~g~iP----~~l~~l~-~L~~L~l~~N~l~g~iP  186 (366)
                        .. ..+|++|+|++|.+++...    ..+..+. +|++|+|++|++++..+
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence              33 2578888888888875433    3345555 78888888888876554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=1.2e-10  Score=111.35  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=92.7

Q ss_pred             CCEEEEEccCCCCCCcCc----ccccCCC-CcCEEEccCCCCCCCCccccCCC-----CCCCeeeccCCcCCCCCCccc-
Q 017764           73 GKVVNLNLKDLCLEGTLA----PEIQSLT-HIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDL-  141 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~~P~~l~~l-----~~L~~L~Ls~N~l~g~lP~~l-  141 (366)
                      .+++.|+|++|.+++..+    ..+.+++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+ 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            459999999999987655    6678888 89999999999998877777765     999999999999997666543 


Q ss_pred             ---CCC-CCCcEEEccCCCCCCCChhhhh----C-CCCCCEEeccCCCCccc
Q 017764          142 ---GIN-HSLTILLLDNNDFVGSLSPEIY----K-LQVLSESQVDEGQLSSA  184 (366)
Q Consensus       142 ---~~l-~~L~~L~L~~N~l~g~iP~~l~----~-l~~L~~L~l~~N~l~g~  184 (366)
                         ..+ ++|+.|+|++|.+++..+..+.    . ..+|++|+|++|.+++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  153 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK  153 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence               344 8999999999999977766544    3 36999999999999853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.97  E-value=7.7e-10  Score=105.32  Aligned_cols=107  Identities=8%  Similarity=0.076  Sum_probs=90.6

Q ss_pred             EEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc-ccCCCCCCcE-EEccC
Q 017764           77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTI-LLLDN  154 (366)
Q Consensus        77 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~-L~L~~  154 (366)
                      .++-++++|+ .+|..+  .++|++|+|++|.|+...+..|.+|++|++|+|++|++.+.+|. .|.++++|+. ++++.
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            5778899998 788776  36899999999999955456799999999999999999877775 5788888764 67788


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++++..|..|..+++|++|++++|++.+..+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCCc
Confidence            99997778889999999999999999986544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.81  E-value=1.9e-10  Score=112.92  Aligned_cols=110  Identities=17%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             CCEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCCCCccccC-----CCCCCCeeeccCCcCCCC----CCc
Q 017764           73 GKVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFG-----ELEELEVLDFGHNNFSGP----LPN  139 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~-----~l~~L~~L~Ls~N~l~g~----lP~  139 (366)
                      .+++.|+|++|.++..    ++..+.++++|++|+|++|.+++..+..+.     ..++|++|+|++|.+++.    ++.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            4566777777766643    455555566666666666666432222221     113455555555555432    223


Q ss_pred             ccCCCCCCcEEEccCCCCCCCChhhhhC-----CCCCCEEeccCCCCc
Q 017764          140 DLGINHSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLS  182 (366)
Q Consensus       140 ~l~~l~~L~~L~L~~N~l~g~iP~~l~~-----l~~L~~L~l~~N~l~  182 (366)
                      .+..+++|+.|+|++|.+++..+..+..     .++|++|++++|+++
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            3334444555555555444332222221     334444555444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.76  E-value=2.5e-10  Score=104.79  Aligned_cols=67  Identities=22%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             CCCCCCCeeeccCCcCCC--CCCcccCCCCCCcEEEccCCCCCCCChhhhhCCC--CCCEEeccCCCCcccCC
Q 017764          118 GELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ--VLSESQVDEGQLSSAAK  186 (366)
Q Consensus       118 ~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~--~L~~L~l~~N~l~g~iP  186 (366)
                      .++++|+.|+|++|+|++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            457899999999999997  4556677899999999999999965  3455555  99999999999998777

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.71  E-value=6.5e-10  Score=109.10  Aligned_cols=112  Identities=16%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             CCEEEEEccCCCCCCcC----ccc-ccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCCcccC-
Q 017764           73 GKVVNLNLKDLCLEGTL----APE-IQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDLG-  142 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~----p~~-l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~-  142 (366)
                      .+++.|+|++|.+++.-    ... +..+++|++|+|++|.+++.    ++..+..+++|++|+|++|.+.+..+..+. 
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            57888999888876432    122 23578889999999888754    566677788899999998888643332222 


Q ss_pred             ----CCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCccc
Q 017764          143 ----INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       143 ----~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                          ..++|+.|+|++|.+++.    ++..+..+++|++|++++|++++.
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence                236888999999988865    566677888899999999888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=3e-09  Score=102.46  Aligned_cols=86  Identities=21%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             CCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCC----Chhh
Q 017764           97 THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGS----LSPE  164 (366)
Q Consensus        97 ~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~----iP~~  164 (366)
                      ..|++|+|++|.|+..    +...+..+++|++|+|++|.|+..    +...+...++|+.|+|++|.++..    +...
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4455555555555321    222334455555555555555421    122334444555555555555421    2223


Q ss_pred             hhCCCCCCEEeccCCCCc
Q 017764          165 IYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       165 l~~l~~L~~L~l~~N~l~  182 (366)
                      +...++|++|+|++|.|+
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            334455555666555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.63  E-value=5.9e-09  Score=95.62  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             cCCCCcCEEEccCCCCCC--CCccccCCCCCCCeeeccCCcCCCCCCcccCCCC--CCcEEEccCCCCCCCChh------
Q 017764           94 QSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSP------  163 (366)
Q Consensus        94 ~~L~~L~~L~Ls~N~l~g--~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~--~L~~L~L~~N~l~g~iP~------  163 (366)
                      .++++|+.|+|++|.|++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            468899999999999998  5567777899999999999999964  3444444  999999999999987762      


Q ss_pred             -hhhCCCCCCEEe
Q 017764          164 -EIYKLQVLSESQ  175 (366)
Q Consensus       164 -~l~~l~~L~~L~  175 (366)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             477899999887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.52  E-value=8e-09  Score=99.45  Aligned_cols=111  Identities=17%  Similarity=0.156  Sum_probs=78.8

Q ss_pred             CCEEEEEccCCCCCCcCcccc-cCCCCcCEEEccCCCCCCCCcccc-----CCCCCCCeeeccCCcCCC----CCCcccC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGF-----GELEELEVLDFGHNNFSG----PLPNDLG  142 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~~P~~l-----~~l~~L~~L~Ls~N~l~g----~lP~~l~  142 (366)
                      .+++.|+|++|.++..-...+ ..+.+|++|+|++|.++..-...+     ....+|++|+|++|.|+.    .+...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            478899999998864322222 235678899999998875433333     346789999999998863    2334456


Q ss_pred             CCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764          143 INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       143 ~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      .+++|++|+|++|.++..    +...+...++|+.|+|++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            778899999999988642    34556777889999999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=1.9e-08  Score=87.10  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             CCCEEEEEccCC-CCCCc----CcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CC
Q 017764           72 DGKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP  138 (366)
Q Consensus        72 ~~~v~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP  138 (366)
                      ...++.|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            357999999999 88632    444567788999999999999743    334455668899999999999753    34


Q ss_pred             cccCCCCCCcEEEc--cCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764          139 NDLGINHSLTILLL--DNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       139 ~~l~~l~~L~~L~L--~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      ..+....+|++|+|  ++|.+...    +-..+...++|++|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            55677789999999  88998743    3345667799999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.43  E-value=2.5e-08  Score=100.91  Aligned_cols=63  Identities=17%  Similarity=0.014  Sum_probs=29.7

Q ss_pred             CCCCCeeeccCCcCCC-CCCcccCCCCCCcEEEccCCCCCCC-ChhhhhCCCCCCEEeccCCCCc
Q 017764          120 LEELEVLDFGHNNFSG-PLPNDLGINHSLTILLLDNNDFVGS-LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       120 l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~L~~N~l~g~-iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +++|++|+|++|++++ .++..+..+++|+.|+|++|.|++. ++..+..+++|++|++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4445555555555443 1222334455555555555554432 2223344555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=9.9e-07  Score=82.87  Aligned_cols=101  Identities=11%  Similarity=-0.015  Sum_probs=57.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCC-eeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE-VLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~-~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++|+++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .+++.+ +++..-+..|.++.+|+.|+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            35666666666665322334666666666666665 5434445566666666 666665 44422234566666666666


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEe
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQ  175 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~  175 (366)
                      |++|+++..-...|.++++|+.++
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eCCCccCccchhhhcCCcchhhhc
Confidence            666666633334566666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.19  E-value=8.3e-07  Score=89.62  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=27.2

Q ss_pred             CEEEEEccCCCCCCc----CcccccCCCCcCEEEccCCCCCC----CCccccCCCCCCCeeeccCCcC
Q 017764           74 KVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNF  133 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g----~~P~~l~~l~~L~~L~Ls~N~l  133 (366)
                      +++.|+|++|.+++.    ++..+.++++|++|+|++|.+++    .++..+.++++|++|+|++|.+
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            455555555554433    22233344555555555555541    2222233444555555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.15  E-value=5.6e-06  Score=67.32  Aligned_cols=96  Identities=20%  Similarity=0.299  Sum_probs=66.9

Q ss_pred             eeeccCCcCC-CCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCcc
Q 017764          125 VLDFGHNNFS-GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVL  202 (366)
Q Consensus       125 ~L~Ls~N~l~-g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~  202 (366)
                      .++.++++++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.|.      ++|....+. |....
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~------CdC~l~~l~~wl~~~   83 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR------CDCRLVPLRAWLAGR   83 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB------CSGGGHHHHHHHHTS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee------ccCccHHHHHHHHhC
Confidence            5666677665 34665432  36889999999998544456788999999999999887      888876665 32211


Q ss_pred             CchhhhcccccccccccccCcccCCCC
Q 017764          203 DEDTVQRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       203 ~~~~~~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      .. ......+.|..+..++|..+....
T Consensus        84 ~~-~~~~~~~~C~~P~~l~g~~l~~l~  109 (130)
T 3rfe_A           84 PE-RAPYRDLRCVAPPALRGRLLPYLA  109 (130)
T ss_dssp             SC-SGGGTTCBCCBSTTTTTCBGGGCC
T ss_pred             cc-cccccCcEeCcChHHcCCCcccCC
Confidence            11 112356789999999999886555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.04  E-value=2.3e-07  Score=93.66  Aligned_cols=110  Identities=7%  Similarity=0.014  Sum_probs=64.9

Q ss_pred             CCEEEEEccCCCCCCcCccccc-CCCCcCEEEcc--C----CCCCCC-----CccccCCCCCCCeeeccCCcCCCCCCcc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILR--N----NSFSGI-----IPEGFGELEELEVLDFGHNNFSGPLPND  140 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls--~----N~l~g~-----~P~~l~~l~~L~~L~Ls~N~l~g~lP~~  140 (366)
                      .+++.|++..|.+++.....+. .+++|+.|+|+  +    |.+++.     ++..+..+++|+.|+|++ .+++.....
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            4677777777777655444444 46777777777  3    444421     111244566777777755 444433333


Q ss_pred             cCC-CCCCcEEEccCCCCCCCChhhh-hCCCCCCEEeccCCCCcc
Q 017764          141 LGI-NHSLTILLLDNNDFVGSLSPEI-YKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       141 l~~-l~~L~~L~L~~N~l~g~iP~~l-~~l~~L~~L~l~~N~l~g  183 (366)
                      +.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.+++
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            433 5667777777777664444333 556777777777777643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.96  E-value=1.8e-06  Score=87.12  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             CCEEEEEccCCCCCCcCccccc-CCCCcCEEEccCC-CCCCC-CccccCCCCCCCeeeccCCcCCCCCCccc----CCCC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNN-SFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDL----GINH  145 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N-~l~g~-~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l----~~l~  145 (366)
                      .+++.|+|++|.+++.....+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+    ..++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5789999999988876666665 6889999999988 45432 44444578899999999998876554433    3667


Q ss_pred             CCcEEEccCCC--CCC-CChhhhhCCCCCCEEeccCC
Q 017764          146 SLTILLLDNND--FVG-SLSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       146 ~L~~L~L~~N~--l~g-~iP~~l~~l~~L~~L~l~~N  179 (366)
                      +|+.|+|++|.  ++. .+...+.++++|++|++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            89999999887  221 11222355789999999888

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.93  E-value=2.3e-06  Score=73.81  Aligned_cols=95  Identities=18%  Similarity=0.185  Sum_probs=73.8

Q ss_pred             CcccccCCCCcCEEEccCC-CCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCC
Q 017764           89 LAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG  159 (366)
Q Consensus        89 ~p~~l~~L~~L~~L~Ls~N-~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g  159 (366)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4445677899999999999 88642    345567788999999999998742    22335556889999999999984


Q ss_pred             C----ChhhhhCCCCCCEEec--cCCCCcc
Q 017764          160 S----LSPEIYKLQVLSESQV--DEGQLSS  183 (366)
Q Consensus       160 ~----iP~~l~~l~~L~~L~l--~~N~l~g  183 (366)
                      .    +...+....+|++|+|  ++|.+..
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            3    3456777889999999  8899873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.87  E-value=1.8e-06  Score=82.55  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccC--CCCCCCeeeccC--CcCCCC-----CCccc--
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG--ELEELEVLDFGH--NNFSGP-----LPNDL--  141 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~--~l~~L~~L~Ls~--N~l~g~-----lP~~l--  141 (366)
                      .+++.|+|++|.-. .++. + .+.+|+.|+|..+.+....-..+.  .+++|+.|+|+.  |...|.     +-..+  
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            57889999877311 2333 3 367888888887776543323333  677888888753  222211     11112  


Q ss_pred             CCCCCCcEEEccCCCCCCCChhhhh---CCCCCCEEeccCCCCcc
Q 017764          142 GINHSLTILLLDNNDFVGSLSPEIY---KLQVLSESQVDEGQLSS  183 (366)
Q Consensus       142 ~~l~~L~~L~L~~N~l~g~iP~~l~---~l~~L~~L~l~~N~l~g  183 (366)
                      ..+++|++|+|.+|.+.......+.   .+++|++|+|+.|.+.+
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            2467888888888877644433333   46778888888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=2.3e-05  Score=73.40  Aligned_cols=86  Identities=12%  Similarity=0.054  Sum_probs=72.8

Q ss_pred             CCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCc-EEEccCCCCCCCChhhhhCCCCCCEE
Q 017764           96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-ILLLDNNDFVGSLSPEIYKLQVLSES  174 (366)
Q Consensus        96 L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-~L~L~~N~l~g~iP~~l~~l~~L~~L  174 (366)
                      +++|+.|+|++|.++..-...|.++.+|+.|+|.+| ++..-...|.++.+|+ .++|.+ +++..-+..|.++.+|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999998666678999999999999998 6633345688999999 999988 6774445789999999999


Q ss_pred             eccCCCCcc
Q 017764          175 QVDEGQLSS  183 (366)
Q Consensus       175 ~l~~N~l~g  183 (366)
                      ++++|.++.
T Consensus       303 ~l~~n~i~~  311 (329)
T 3sb4_A          303 LATGDKITT  311 (329)
T ss_dssp             EECSSCCCE
T ss_pred             EeCCCccCc
Confidence            999998873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.48  E-value=5.5e-05  Score=72.23  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=31.8

Q ss_pred             CCCCCeeeccCCcCCCCCCccc---CCCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCc
Q 017764          120 LEELEVLDFGHNNFSGPLPNDL---GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       120 l~~L~~L~Ls~N~l~g~lP~~l---~~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +++|++|+|.+|.+.+.....+   ..+++|++|+|+.|.+.+.    +...+.++++|+.|+|++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4566666666655543222111   2345566666666655532    2223344556666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.46  E-value=3.6e-05  Score=65.77  Aligned_cols=83  Identities=10%  Similarity=0.012  Sum_probs=38.5

Q ss_pred             CcCEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCCcccCCC----CCCcEEEccCCC-CCCCChhhhhCCCCC
Q 017764           98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGIN----HSLTILLLDNND-FVGSLSPEIYKLQVL  171 (366)
Q Consensus        98 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~-l~g~lP~~l~~l----~~L~~L~L~~N~-l~g~iP~~l~~l~~L  171 (366)
                      .|+.|||+++.++..--..+.++++|++|+|+++. ++..--..+..+    ++|++|+|+++. ++..--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34555555554443222334455555555555553 332111123332    246666666653 442212234566666


Q ss_pred             CEEeccCCC
Q 017764          172 SESQVDEGQ  180 (366)
Q Consensus       172 ~~L~l~~N~  180 (366)
                      ++|++++..
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.33  E-value=4.8e-05  Score=65.00  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCC-CCCCCccccCCC----CCCCeeeccCCc-CCCCCCcccCCCCC
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGEL----EELEVLDFGHNN-FSGPLPNDLGINHS  146 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~~P~~l~~l----~~L~~L~Ls~N~-l~g~lP~~l~~l~~  146 (366)
                      -+++.|||+++.++..--..+..+++|++|+|+++. ++..--..+..+    ++|++|+|+++. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            369999999999875444557899999999999985 665433445554    379999999975 66332235778999


Q ss_pred             CcEEEccCCC
Q 017764          147 LTILLLDNND  156 (366)
Q Consensus       147 L~~L~L~~N~  156 (366)
                      |+.|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.27  E-value=0.00047  Score=66.62  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=49.4

Q ss_pred             ccccCCCCcCEEEccCCCCC-----CCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhh
Q 017764           91 PEIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI  165 (366)
Q Consensus        91 ~~l~~L~~L~~L~Ls~N~l~-----g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l  165 (366)
                      ..|.++.+|+.+++.+|.+.     ..-...|.++.+|+.++|.+ +++-.-...|.++.+|+.++|..| ++..-...|
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            34566666666666665553     22334566666666666663 344222234566666666666443 442233456


Q ss_pred             hCCCCCCEEeccCCCCc
Q 017764          166 YKLQVLSESQVDEGQLS  182 (366)
Q Consensus       166 ~~l~~L~~L~l~~N~l~  182 (366)
                      .++ +|+.+++.+|.+.
T Consensus       343 ~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             SSS-CCCEEEECCSSCC
T ss_pred             CCC-CCCEEEEcCCCCc
Confidence            666 6777777666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0018  Score=52.23  Aligned_cols=55  Identities=16%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             EEEccCCCCC-CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcC
Q 017764           77 NLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF  133 (366)
Q Consensus        77 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l  133 (366)
                      .++.++++|+ ..+|..+.  .+|++|+|++|.|+..-+..|..+++|++|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554 23443322  2455555555555533333344444444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.81  E-value=0.0019  Score=62.30  Aligned_cols=106  Identities=6%  Similarity=0.006  Sum_probs=80.0

Q ss_pred             CCEEEEEccCCCCC-----CcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCC
Q 017764           73 GKVVNLNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL  147 (366)
Q Consensus        73 ~~v~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L  147 (366)
                      .+++.|+|.+|.+.     ..-...|.++.+|+.++|. +.++-.-...|.++.+|+.++|..| ++..-...|.++ +|
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence            36788888877654     1233468899999999999 4577555678999999999999765 653334568888 99


Q ss_pred             cEEEccCCCCCCCChhhhhCCC-CCCEEeccCCCC
Q 017764          148 TILLLDNNDFVGSLSPEIYKLQ-VLSESQVDEGQL  181 (366)
Q Consensus       148 ~~L~L~~N~l~g~iP~~l~~l~-~L~~L~l~~N~l  181 (366)
                      +.+++.+|.+.......|..++ +++.|++-.|.+
T Consensus       348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            9999999988755555677774 788888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.74  E-value=0.00033  Score=60.90  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=75.5

Q ss_pred             CCCEEEEEccCC-CCCC----cCcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CC
Q 017764           72 DGKVVNLNLKDL-CLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP  138 (366)
Q Consensus        72 ~~~v~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP  138 (366)
                      +..++.|+|++| .|..    .+-..+..-+.|+.|+|++|.|...    +-..+..-+.|++|+|++|.|...    +-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            457899999985 6652    2334566678899999999998733    223344457899999999998742    12


Q ss_pred             cccCCCCCCcEEEccCCC---CCC----CChhhhhCCCCCCEEeccCCCC
Q 017764          139 NDLGINHSLTILLLDNND---FVG----SLSPEIYKLQVLSESQVDEGQL  181 (366)
Q Consensus       139 ~~l~~l~~L~~L~L~~N~---l~g----~iP~~l~~l~~L~~L~l~~N~l  181 (366)
                      +.+..-+.|+.|+|++|.   +..    .+-..+..-+.|+.|+++.|..
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            235555679999998653   321    1334566678899999987754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.65  E-value=0.045  Score=52.10  Aligned_cols=85  Identities=8%  Similarity=0.113  Sum_probs=43.6

Q ss_pred             ccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCC
Q 017764           93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS  172 (366)
Q Consensus        93 l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~  172 (366)
                      +.++..|+.+++. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++..-...|.++.+|+
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            4445555555554 2333222345556666666666543 33112234556666666666433 4422233566666666


Q ss_pred             EEeccCCC
Q 017764          173 ESQVDEGQ  180 (366)
Q Consensus       173 ~L~l~~N~  180 (366)
                      .+++.+|.
T Consensus       361 ~i~~~~~~  368 (394)
T 4gt6_A          361 NIEYSGSR  368 (394)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCce
Confidence            66666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.65  E-value=0.0038  Score=54.14  Aligned_cols=88  Identities=18%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             cccCCCCcCEEEccCC-CCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCC--
Q 017764           92 EIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGS--  160 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N-~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~--  160 (366)
                      .+.+-+.|++|+|++| .+...    +-..+..-+.|+.|+|++|+|...    +-..+..-+.|+.|+|+.|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999986 77532    334566678899999999999732    122334457899999999999732  


Q ss_pred             --ChhhhhCCCCCCEEeccCC
Q 017764          161 --LSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       161 --iP~~l~~l~~L~~L~l~~N  179 (366)
                        +-+.+..-..|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              2234556678999999875

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.61  E-value=0.0043  Score=39.77  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=15.7

Q ss_pred             CCceEEEehhhHHHHHHHHHHH
Q 017764          307 SKHIAILGGVIGGAILLVATVG  328 (366)
Q Consensus       307 ~~~~~i~~~vv~g~~v~~~~~~  328 (366)
                      +.+.+|+++||+|+++++++++
T Consensus         8 s~~~~IA~gVVgGv~~~~ii~~   29 (44)
T 2ks1_B            8 PKIPSIATGMVGALLLLLVVAL   29 (44)
T ss_dssp             SCSSSSTHHHHHHHHHHHHHHH
T ss_pred             CCcceEEeehhHHHHHHHHHHH
Confidence            3455699999999777666643

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.52  E-value=0.0031  Score=40.33  Aligned_cols=29  Identities=28%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             CCCceEEEehhhHHHHHHHHHHH-HHhhhc
Q 017764          306 SSKHIAILGGVIGGAILLVATVG-IYLCRC  334 (366)
Q Consensus       306 ~~~~~~i~~~vv~g~~v~~~~~~-~~~~~~  334 (366)
                      ++.+.+|+++||+|+++++++++ +++++|
T Consensus         6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~R   35 (44)
T 2l2t_A            6 HARTPLIAAGVIGGLFILVIVGLTFAVYVR   35 (44)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEeehHHHHHHHHHHHHHHHHhh
Confidence            44566799999999777666633 333433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.99  E-value=0.048  Score=51.42  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=54.8

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEEEc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLL  152 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L~L  152 (366)
                      .++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .++ ..|.++.+|+.+++
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEE
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccc
Confidence            3455555433 22122234556667777776654 33233345556666776666543 33 222 34556667777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N  179 (366)
                      .++.++..-...|.++.+|+.+.|..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc
Confidence            666665222345666667777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.71  E-value=0.041  Score=52.37  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-cccCCCCCCcEEEcc
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLD  153 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L~L~  153 (366)
                      ++.+.+. +.+...-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++ .|. ..|.++.+|+.+++.
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence            4444443 2333222335788999999999865 55344567999999999999765 55 454 468999999999999


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQL  181 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l  181 (366)
                      +|...   -..+....+|+.+.+..|.+
T Consensus       366 ~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          366 GSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             SCHHH---HHTCBCCCCC----------
T ss_pred             Cceee---hhhhhccCCCCEEEeCCCCE
Confidence            88643   24567778899988877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.31  E-value=0.047  Score=51.92  Aligned_cols=85  Identities=11%  Similarity=-0.001  Sum_probs=64.4

Q ss_pred             cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L  171 (366)
                      .+..+.+|+.+.+..+ ++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.++|..| ++..-...|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4778889999999765 55344567889999999999765 55222356889999999999876 653334578899999


Q ss_pred             CEEeccCC
Q 017764          172 SESQVDEG  179 (366)
Q Consensus       172 ~~L~l~~N  179 (366)
                      +.+++..|
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            99998654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.99  E-value=0.075  Score=50.53  Aligned_cols=100  Identities=10%  Similarity=-0.023  Sum_probs=69.3

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      .++.+.+..+... .-...+.++..|+.+.+..+.+.   ...|..+.+|+.+.+..+ ++..-...|.++.+|+.++|.
T Consensus       254 ~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          254 DLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             SCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             cceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            3445555444322 22345777888998888776543   246778999999999875 552223468899999999997


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N  179 (366)
                      ++ ++..-...|.++.+|+.+++..|
T Consensus       329 ~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          329 YL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             Cc-ccEEhHHhccCCCCCCEEEECcc
Confidence            54 65233457889999999999776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.94  E-value=0.32  Score=45.57  Aligned_cols=88  Identities=11%  Similarity=0.039  Sum_probs=45.2

Q ss_pred             cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L  171 (366)
                      .+.....|+.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|.++.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3444556666665443 22222344556666666666554 33122234555666666666443 331222345566666


Q ss_pred             CEEeccCCCCc
Q 017764          172 SESQVDEGQLS  182 (366)
Q Consensus       172 ~~L~l~~N~l~  182 (366)
                      +.+.+.+|.++
T Consensus       289 ~~i~l~~~~i~  299 (379)
T 4h09_A          289 TKVVMDNSAIE  299 (379)
T ss_dssp             CEEEECCTTCC
T ss_pred             ccccccccccc
Confidence            66666655544

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=90.03  E-value=0.11  Score=32.19  Aligned_cols=9  Identities=22%  Similarity=0.346  Sum_probs=3.8

Q ss_pred             EEEehhhHH
Q 017764          311 AILGGVIGG  319 (366)
Q Consensus       311 ~i~~~vv~g  319 (366)
                      +|.++||+.
T Consensus        12 aIAGiVvG~   20 (38)
T 2k1k_A           12 EIVAVIFGL   20 (38)
T ss_dssp             HHHHHHHHH
T ss_pred             ceeeeehHH
Confidence            444444443

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=89.61  E-value=0.083  Score=33.20  Aligned_cols=16  Identities=44%  Similarity=0.924  Sum_probs=11.2

Q ss_pred             ceEEEehhhHHHHHHH
Q 017764          309 HIAILGGVIGGAILLV  324 (366)
Q Consensus       309 ~~~i~~~vv~g~~v~~  324 (366)
                      ..+|++++++|+++++
T Consensus        12 ~~~I~~~vv~Gv~ll~   27 (41)
T 2k9y_A           12 NLAVIGGVAVGVVLLL   27 (41)
T ss_dssp             STHHHHHHHHHHHHHH
T ss_pred             eEEEEeehhHHHHHHH
Confidence            3467778888877655

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=89.49  E-value=0.078  Score=33.79  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=13.6

Q ss_pred             CceEEEehhhHHHHHHHHHHHHHhhhc
Q 017764          308 KHIAILGGVIGGAILLVATVGIYLCRC  334 (366)
Q Consensus       308 ~~~~i~~~vv~g~~v~~~~~~~~~~~~  334 (366)
                      ....|+++||+-++++++.++++++.|
T Consensus        10 ~~~~Ia~~vVGvll~vi~~l~~~~~~R   36 (44)
T 2jwa_A           10 PLTSIISAVVGILLVVVLGVVFGILIK   36 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhhee
Confidence            344577777773333333344444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 9e-11
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 46  PYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR 105
           P   LT+  + +   N         +   +  L L    +       + SLT ++ +   
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFA 337

Query: 106 NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155
           NN  S         L  +  L  GHN  S   P  L     +T L L++ 
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 26/154 (16%)

Query: 50  LTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSF 109
           LT+  S    NN  S          +  L+L    L+      + SLT++  + L NN  
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 253

Query: 110 SGIIPEGFGELEELEVLDFGHNNFSGPLP--------------------NDLGINHSLTI 149
           S + P     L +L  L  G N  S   P                    + +    +LT 
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183
           L L  N+        +  L  L        ++S 
Sbjct: 312 LTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 74  KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133
           + +   L    +  T++     L  + ++         I  +G   L  L  ++F +N  
Sbjct: 23  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL 78

Query: 134 SGPLP 138
           +   P
Sbjct: 79  TDITP 83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 97  THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND 156
            ++  + LRNN   G +P+G  +L+ L  L+   NN  G +P   G      +    NN 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 157 F 157
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 53  WRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI 112
            +    +N+     G       +  L+L++  + GTL   +  L  + S+ +  N+  G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 113 IPEGFGELEELEVLDFGHNNF--SGPLP 138
           IP+  G L+  +V  + +N      PLP
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 24  LCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC--SWFGVECSD----GKVVN 77
           LC     +  ALL++++ +  +P   L+SW       + C  +W GV C       +V N
Sbjct: 2   LC--NPQDKQALLQIKKDL-GNP-TTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNN 54

Query: 78  LNLKDLCLEG--TLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFS 134
           L+L  L L     +   + +L ++  + +    +  G IP    +L +L  L   H N S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 135 GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYER 194
           G +P+ L    +L  L    N   G+L P I  L  L     D  ++S A       + +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 195 SIKWN 199
                
Sbjct: 175 LFTSM 179

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174
           D  +N   G LP  L     L  L +  N+  G + P+   LQ    S
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVS 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 63  CSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEE 122
           C    V+CS     +L L+       +  ++        + L+NN  + I    F  L+ 
Sbjct: 10  CHLRVVQCS-----DLGLE------KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKN 56

Query: 123 LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           L  L   +N  S   P        L  L L  N  
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 113 IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 172
           +P+      +  +LD  +N  +     D     +L  L+L NN            L  L 
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 173 ESQVDEGQLSS 183
              + + QL  
Sbjct: 83  RLYLSKNQLKE 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 9e-05
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 15/96 (15%)

Query: 77  NLNLKDLCLEGT------LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVL 126
           +L+++ L ++         A  +  L   + + L +   +      I         L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 127 DFGHNNFSGPLPNDLG-----INHSLTILLLDNNDF 157
           +   N       + +       +  +  L L N   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 99  IKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSG----PLPNDLGINHSLTILLLD 153
           I+S+ ++    S     E    L++ +V+       +      + + L +N +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 154 NNDFVGSLSPEIYKL 168
           +N+        + + 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 9/85 (10%)

Query: 94  QSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINH 145
           Q  + ++ + L +   S      +         L  LD  +N         L   +    
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 146 S-LTILLLDNNDFVGSLSPEIYKLQ 169
             L  L+L +  +   +   +  L+
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALE 450

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 106 NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157
           NN+ + +       LE L+ L    N+    +P     +H L    L  N +
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 9e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 91  PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150
             + +L+ + ++   +N  S I P     L  L  +   +N  S   P  L    +L I+
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 151 LLDN 154
            L N
Sbjct: 223 TLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.48
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.98
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.86
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.83
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=4.8e-27  Score=219.20  Aligned_cols=159  Identities=28%  Similarity=0.488  Sum_probs=146.1

Q ss_pred             CchHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC--CcceeeeC----CCCEEEEEccCCCCCC--cCcccccCCCC
Q 017764           27 SLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC--SWFGVECS----DGKVVNLNLKDLCLEG--TLAPEIQSLTH   98 (366)
Q Consensus        27 ~~~~~~~aL~~~k~~~~~~~~~~l~~W~~~~~~~~~C--~w~Gv~C~----~~~v~~L~L~~n~l~g--~~p~~l~~L~~   98 (366)
                      |.++|++||++||+.+. |+ ..+.+|.   .+.|||  .|+||+|+    .+||+.|+|++|++.|  .+|.++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~-~~-~~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLG-NP-TTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC-GGGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCC-CC-CcCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            67899999999999995 44 3689998   678999  49999998    2379999999999998  58899999999


Q ss_pred             cCEEEccC-CCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEecc
Q 017764           99 IKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD  177 (366)
Q Consensus        99 L~~L~Ls~-N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~  177 (366)
                      |++|+|++ |+++|.+|..|++|++|++|+|++|++.+..+..+..+..|+++++++|.+.+.+|..+.++++|+.++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            99999997 89999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             CCCCcccCCcccc
Q 017764          178 EGQLSSAAKKEQS  190 (366)
Q Consensus       178 ~N~l~g~iP~~~~  190 (366)
                      +|.++|.+|....
T Consensus       158 ~n~l~~~ip~~~~  170 (313)
T d1ogqa_         158 GNRISGAIPDSYG  170 (313)
T ss_dssp             SSCCEEECCGGGG
T ss_pred             ccccccccccccc
Confidence            9999999997544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.9e-18  Score=146.81  Aligned_cols=159  Identities=18%  Similarity=0.233  Sum_probs=126.9

Q ss_pred             CCcceeeeCC-----------CCEEEEEccCCCCCCcCc-ccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 017764           63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH  130 (366)
Q Consensus        63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~  130 (366)
                      |.|..|.|+.           .+++.|+|++|.|++.++ ..|.++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            6788899971           368999999999987554 4578999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCcccccccccccccCccCchhhhcc
Q 017764          131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRR  210 (366)
Q Consensus       131 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~~~~~~~~~~~~~~  210 (366)
                      |++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+..      .|....+.  .+.........
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~------~~~~~~~~--~~l~~~~l~~~  159 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC------NCHLAWFA--EWLRKKSLNGG  159 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC------SGGGHHHH--HHHHHHCCSGG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc------ccchHHHh--hhhhhhcccCC
Confidence            99997667779999999999999999997777889999999999999999873      33322221  01111222335


Q ss_pred             cccccccccccCcccCCCC
Q 017764          211 LLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       211 ~~~c~~~~~~~g~~l~~~~  229 (366)
                      .+.|..+..++|..+.+..
T Consensus       160 ~~~c~~p~~l~~~~l~~L~  178 (192)
T d1w8aa_         160 AARCGAPSKVRDVQIKDLP  178 (192)
T ss_dssp             GCBBCSSTTTTTSBGGGSC
T ss_pred             CeEeCCChhhcCCEeeecC
Confidence            5678888888877665444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.1e-14  Score=116.58  Aligned_cols=103  Identities=22%  Similarity=0.243  Sum_probs=90.7

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN  155 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N  155 (366)
                      +.|+|++|+++ .++ .+.++++|++|++++|.|+ .+|..+..+++|++|++++|.|+ .+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            36999999998 555 5899999999999999998 68888999999999999999999 465 5899999999999999


Q ss_pred             CCCCCC-hhhhhCCCCCCEEeccCCCCcc
Q 017764          156 DFVGSL-SPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       156 ~l~g~i-P~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      +++..- ...+..+++|+.|++++|+++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998432 2568999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.3e-15  Score=133.18  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=115.3

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.+++++|.|++..+..|..+++|++|+|++|.+++..+..|.++++|+++++++|++++..|..|..+++|++|++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            46788888888888655566888888999999999998777788888999999999999998888888889999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc-ccCccCchhhhcccccccccccccCcccCCCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIAP  229 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~~  229 (366)
                      ++|++++..+..|..+.+|++|++++|+|.      +.|....+. |.   .........+.|..+..++|..+....
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~------C~C~~~~l~~~l---~~~~~~~~~~~C~~p~~l~g~~l~~l~  277 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWV------CDCRARPLWAWL---QKFRGSSSEVPCSLPQRLAGRDLKRLA  277 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEE------CSGGGHHHHHHH---HHCCSEECCCBEEESGGGTTCBGGGSC
T ss_pred             cccccccccccccccccccCEEEecCCCCC------CCccchHHHHHH---HhCcCCCCceEeCCchHHcCCccccCC
Confidence            999999877788889999999999999887      455543322 21   111122356678888888887765443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-14  Score=119.47  Aligned_cols=112  Identities=18%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             EEccCCCCCCcCcccccCCCCcCEEEccCC-CCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCC
Q 017764           78 LNLKDLCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNND  156 (366)
Q Consensus        78 L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~  156 (366)
                      ++.+++++. .+|..+..+++|++|+|++| .++..-+..|.++++|+.|+|++|+|+..-+..|..+++|++|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            334455555 56777888999999999876 4886666789999999999999999997667779999999999999999


Q ss_pred             CCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764          157 FVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK  197 (366)
Q Consensus       157 l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~  197 (366)
                      |+ .+|..+....+|+.|+|++|+|.      +.|....+.
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~~------C~C~~~~l~  125 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPLH------CSCALRWLQ  125 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCC------CCGGGHHHH
T ss_pred             Cc-ccChhhhccccccccccCCCccc------CCchHHHHH
Confidence            99 66766555668999999999986      778666544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=7.7e-15  Score=135.45  Aligned_cols=119  Identities=22%  Similarity=0.353  Sum_probs=111.2

Q ss_pred             CCEEEEEccC-CCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      .+++.|+|++ |++.|.+|.+|++|++|++|+|++|.+.+..+..+..+.+|+++++++|.+.+.+|..+.+++.|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            4789999987 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCChhhhhCCCCC-CEEeccCCCCcccCCccccc
Q 017764          152 LDNNDFVGSLSPEIYKLQVL-SESQVDEGQLSSAAKKEQSC  191 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L-~~L~l~~N~l~g~iP~~~~c  191 (366)
                      +++|.++|.+|..+..+.++ +.+++++|+++|.+|.....
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999998876 89999999999988865443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.48  E-value=6.9e-14  Score=120.18  Aligned_cols=110  Identities=20%  Similarity=0.282  Sum_probs=97.8

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCC-ccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccC
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN  154 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~-P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~  154 (366)
                      +.++.++++|+ .+|..+.  +++++|+|++|.|++.+ +..|.++++|++|+|++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46899999998 7888764  78999999999998755 56678999999999999999988888999999999999999


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCcccCCcc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKE  188 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~  188 (366)
                      |++++..+..|.++++|++|+|++|+|++..+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~  121 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHH
Confidence            9999777778999999999999999999766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-12  Score=117.36  Aligned_cols=111  Identities=21%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|+|++|.+++ ++..+.++++|++|++++|.+....+..+..+.+|++|++++|.++...+..+..+.+|+.|+++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            34444444444442 23334444444444444444443333333333334444444444442222333444555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      +|++++..+..|..+++|++|+|++|+|+ .||
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccccccCccccccccccceeecccCCCc-ccC
Confidence            55555444444555555555555555555 344

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-13  Score=120.82  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=106.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|++++|.+....+..+..+.+|++|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|++|+|
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence            57899999999998777777889999999999999999777778889999999999999999777778999999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCccccccccccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK  197 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~~~~c~~~~~~  197 (366)
                      ++|+|+ .+|..+..+++|+.|+|++|+|.      |+|....+.
T Consensus       180 s~N~L~-~lp~~~~~~~~L~~L~L~~Np~~------CdC~~~~l~  217 (266)
T d1p9ag_         180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL------CNCEILYFR  217 (266)
T ss_dssp             CSSCCC-CCCTTTTTTCCCSEEECCSCCBC------CSGGGHHHH
T ss_pred             ccCCCc-ccChhHCCCCCCCEEEecCCCCC------CCcchHHHH
Confidence            999999 89999999999999999999886      777765443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=114.12  Aligned_cols=106  Identities=20%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .++++|+|++|+|+ .++..+..+++|++|||++|.++ .++ .|..+++|++|++++|+++...+..+..+++|+.|+|
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            36899999999998 56766788999999999999998 453 5889999999999999999533334567999999999


Q ss_pred             cCCCCCCCCh--hhhhCCCCCCEEeccCCCCc
Q 017764          153 DNNDFVGSLS--PEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       153 ~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~  182 (366)
                      ++|+++ .++  ..+..+++|++|++++|+++
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccc-ccccccccccccccchhhcCCCccc
Confidence            999998 444  36789999999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-12  Score=117.21  Aligned_cols=115  Identities=21%  Similarity=0.220  Sum_probs=100.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..+.++++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            47889999999988666667888899999999999999766777888999999999999999766778889999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCCc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK  187 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP~  187 (366)
                      ++|++++..|..|..+++|++|++++|++++..+.
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             hhccccccChhHhhhhhhccccccccccccccccc
Confidence            99999988899999999999999999999876654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=2e-11  Score=97.18  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=82.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC--cccCCCCCCcEE
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTIL  150 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L  150 (366)
                      .+++.|+|++|.|+ .+|..+..+++|++|++++|.|++ +| .+..+++|++|++++|+++. ++  ..+..+++|++|
T Consensus        20 ~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC-CCCchhhcCCCCCCEE
Confidence            47999999999998 688889999999999999999995 55 58999999999999999984 44  468889999999


Q ss_pred             EccCCCCCCC--Ch-hhhhCCCCCCEEe
Q 017764          151 LLDNNDFVGS--LS-PEIYKLQVLSESQ  175 (366)
Q Consensus       151 ~L~~N~l~g~--iP-~~l~~l~~L~~L~  175 (366)
                      ++++|.++..  ++ ..+..+++|+.|.
T Consensus        96 ~l~~N~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          96 NLQGNSLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             ECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ECCCCcCCcCccHHHHHHHHCcCcceEe
Confidence            9999998732  22 3345678887763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=2.4e-11  Score=110.97  Aligned_cols=105  Identities=17%  Similarity=0.251  Sum_probs=74.4

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.+++++|.+. .++..+  +++|+.|++++|.+++..+..|.+++.+++|++++|.+.+..+..+.++++|++|+|+
T Consensus       151 ~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             TCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             ccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence            5667777777766 344432  4677777777777777777777777777777777777776556666777777777777


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|+|+ .+|..|.++++|++|+|++|+++
T Consensus       228 ~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         228 NNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccc-ccccccccccCCCEEECCCCccC
Confidence            77776 56667777777777777777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4e-11  Score=99.30  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=81.6

Q ss_pred             CCCCCcceeeeC-------------CCCEEEEEccCCC-CCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCe
Q 017764           60 NNPCSWFGVECS-------------DGKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEV  125 (366)
Q Consensus        60 ~~~C~w~Gv~C~-------------~~~v~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~  125 (366)
                      ..|+.+.++.|.             ..++++|+|++|+ |+..-+..|.++++|+.|+|++|.|+...+..|..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            445567888886             1378999998764 87554566999999999999999999877888999999999


Q ss_pred             eeccCCcCCCCCCcccCCCCCCcEEEccCCCCC
Q 017764          126 LDFGHNNFSGPLPNDLGINHSLTILLLDNNDFV  158 (366)
Q Consensus       126 L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~  158 (366)
                      |+|++|+|+ .+|.......+|+.|+|++|.|.
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999999 67776555568999999999985

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=4.3e-11  Score=109.23  Aligned_cols=112  Identities=16%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|++++|.+.+..+..+.+++.+++|++++|.+++..+..+.++++|++|+|++|.|+ .+|..+..+++|++|+|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            46889999999988888888899999999999999999887888888999999999999998 68888999999999999


Q ss_pred             cCCCCCCCChh-------hhhCCCCCCEEeccCCCCc-ccCC
Q 017764          153 DNNDFVGSLSP-------EIYKLQVLSESQVDEGQLS-SAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~-------~l~~l~~L~~L~l~~N~l~-g~iP  186 (366)
                      ++|+++ .++.       .+..+.+|+.|+|++|++. +.++
T Consensus       250 s~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             CSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             CCCccC-ccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            999988 4443       2345678999999999885 4444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.7e-11  Score=99.51  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             cccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhCCCCC
Q 017764           92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL  171 (366)
Q Consensus        92 ~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L  171 (366)
                      .+.++..|++|||++|.|+ .++..+..+.+|++|+|++|+++ .++ .+..+++|++|+|++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4677889999999999998 46776788999999999999998 564 68899999999999999995544556789999


Q ss_pred             CEEeccCCCCcc
Q 017764          172 SESQVDEGQLSS  183 (366)
Q Consensus       172 ~~L~l~~N~l~g  183 (366)
                      ++|++++|+++.
T Consensus        90 ~~L~L~~N~i~~  101 (162)
T d1a9na_          90 TELILTNNSLVE  101 (162)
T ss_dssp             CEEECCSCCCCC
T ss_pred             ccceeccccccc
Confidence            999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=5.6e-10  Score=95.68  Aligned_cols=101  Identities=21%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             CEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEcc
Q 017764           74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD  153 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~  153 (366)
                      +++.|++++|+++. +. .+..+++|++|+|++|.+++. + .+.++++|++|++++|.+. .++ .+.+++.|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            34555555555542 21 244555555555555555532 2 1455555555555555554 232 24455555555555


Q ss_pred             CCCCCCCChhhhhCCCCCCEEeccCCCCc
Q 017764          154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       154 ~N~l~g~iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +|.+...  ..+..+++|+.|++++|++.
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhc
Confidence            5554421  12444555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=6.4e-10  Score=96.18  Aligned_cols=103  Identities=23%  Similarity=0.346  Sum_probs=75.5

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|.+++ ++ .+.++++|++|++++|.+++ ++ .+..+++|+.|++++|.+. .+ ..+..+++|+.+++
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYL  141 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEEC
T ss_pred             CCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc-cc-cccccccccccccc
Confidence            578889999998885 44 36788899999999998884 44 4778888888888888876 33 34666677777777


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ++|.+++  +..+..+++|+++++++|++++
T Consensus       142 ~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         142 GNNKITD--ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CSSCCCC--CGGGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccc--cccccccccccccccccccccc
Confidence            7777663  2345667777777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=1.5e-09  Score=93.01  Aligned_cols=105  Identities=20%  Similarity=0.308  Sum_probs=84.2

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|.+++. + .+.++++|++|++++|.+.. ++ .+.++++|+.|++++|.+.. + ..+..+++|+.|+
T Consensus        61 l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCc-c-cccCCccccccccccccccc-cc-cccccccccccccccccccc-c-cccchhhhhHHhh
Confidence            35899999999999864 3 38899999999999999874 44 47888999999999888874 2 3577888899999


Q ss_pred             ccCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       152 L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      +++|++. .++ .+..+++|+.|++.+|++++.
T Consensus       135 l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         135 LSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             hhhhhhc-ccc-cccccccccccccccccccCC
Confidence            9998887 444 577888888888888888753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=2.8e-12  Score=110.72  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=90.8

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEE
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL  151 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~  151 (366)
                      ..+++.|+|++|+|+ .++ .+..|++|++|+|++|.++ .++..+..+.+|++|++++|+++. + ..+..+++|++|+
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccccccc
Confidence            357899999999998 554 5889999999999999998 566655566789999999999984 4 3577889999999


Q ss_pred             ccCCCCCCCCh--hhhhCCCCCCEEeccCCCCcccCC
Q 017764          152 LDNNDFVGSLS--PEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       152 L~~N~l~g~iP--~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      |++|+++ .++  ..+..+++|+.|++++|++....+
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccchhc-cccccccccCCCccceeecCCCccccCcc
Confidence            9999998 444  468899999999999999875444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=5.3e-10  Score=104.31  Aligned_cols=106  Identities=21%  Similarity=0.259  Sum_probs=88.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+++++.+.+..  .+..+..++.+++..|.+++.  ..+..+.++++|++++|++++. + .+..+++|+.|+|
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEEC
Confidence            47899999999998543  478889999999999999852  3578889999999999999864 3 3788899999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|+++ .++ .+.++++|++|++++|++++.+|
T Consensus       337 ~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         337 ANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh
Confidence            999998 455 68899999999999999987655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=2e-09  Score=93.02  Aligned_cols=104  Identities=17%  Similarity=0.272  Sum_probs=89.2

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      ..++.|++++|.++. ++ .+..+++|++|+|++|.+++ ++ .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            368899999999985 33 48889999999999999996 44 47899999999999999984 55 5889999999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|.+. .+ ..+.++++|+.+++++|.+++.
T Consensus       120 ~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~  149 (210)
T d1h6ta2         120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDI  149 (210)
T ss_dssp             TTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC
T ss_pred             cccccc-cc-cccccccccccccccccccccc
Confidence            999987 44 4688999999999999998753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=1.9e-09  Score=100.36  Aligned_cols=105  Identities=20%  Similarity=0.271  Sum_probs=89.4

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|++++|.+++..  .+..+++|++|++++|.+++..  .+..+..++.+++..|.+++ + ..+..+.+++.|++
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~l  314 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTL  314 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEEC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCeEEC
Confidence            47899999999998643  3888999999999999998643  37789999999999999985 3 45788899999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|++++. + .+..+++|+.|++++|++++ ++
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~  345 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS  345 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch
Confidence            99999964 3 38899999999999999985 44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=7.1e-09  Score=90.23  Aligned_cols=106  Identities=20%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             CCCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-------------
Q 017764           72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-------------  138 (366)
Q Consensus        72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP-------------  138 (366)
                      ..+++.|+|++|.+.+..  .+.++.+|++|++++|.++ .++ .+..+++|++++++++.+.+..+             
T Consensus        62 l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhch
Confidence            357778888888777533  2667777777777777665 232 35566666666666555443211             


Q ss_pred             -------cccCCCCCCcEEEccCCCCCCCChhhhhCCCCCCEEeccCCCCcc
Q 017764          139 -------NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       139 -------~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                             ..+..+++|+.|++++|.+++. + .+.++++|+.|++++|++++
T Consensus       138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         138 LNQITNISPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhchhhhhccccccccccccccccccc-h-hhcccccceecccCCCccCC
Confidence                   1123345566666666666532 2 25566666666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=5.6e-09  Score=90.92  Aligned_cols=104  Identities=22%  Similarity=0.321  Sum_probs=81.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.++++++...+.  ..+.....++.++++++.+....  .+..+++|++|++++|.+.+.  ..+.++++|+.|+|
T Consensus       107 ~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA  180 (227)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceeccc
Confidence            4688899988887643  34667788899999888887543  367788899999999988743  24788899999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      ++|++++ ++ .+.++++|++|++++|++++.
T Consensus       181 s~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         181 DDNKISD-IS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC
Confidence            9999884 54 378889999999999998853

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=4.5e-11  Score=102.97  Aligned_cols=91  Identities=22%  Similarity=0.342  Sum_probs=78.5

Q ss_pred             cCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEccCCCCCCCChhhhhC
Q 017764           88 TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK  167 (366)
Q Consensus        88 ~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~  167 (366)
                      .++..+..|++|++|+|++|.++ .++ .+..+++|++|+|++|.++ .++.....+.+|+.|++++|+++ .+ ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-ccccc
Confidence            56678999999999999999998 454 5889999999999999998 67765555678999999999998 44 45888


Q ss_pred             CCCCCEEeccCCCCcc
Q 017764          168 LQVLSESQVDEGQLSS  183 (366)
Q Consensus       168 l~~L~~L~l~~N~l~g  183 (366)
                      +++|+.|++++|+++.
T Consensus       114 l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHSSEEEESEEECCC
T ss_pred             cccccccccccchhcc
Confidence            9999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.75  E-value=2.6e-08  Score=91.03  Aligned_cols=100  Identities=26%  Similarity=0.343  Sum_probs=81.7

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .++++|+|++++|+ .+|+.   +++|++|+|++|+|+ .+|..   +.+|+.|++++|+++ .++. +  ...|++|+|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            46789999999998 67853   478999999999999 67865   457899999999998 4543 1  246999999


Q ss_pred             cCCCCCCCChhhhhCCCCCCEEeccCCCCcccCC
Q 017764          153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK  186 (366)
Q Consensus       153 ~~N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~iP  186 (366)
                      ++|.+. .+|. ++.+.+|++|++++|.+.+...
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccccc
Confidence            999998 6774 6789999999999999876544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.3e-09  Score=90.02  Aligned_cols=84  Identities=18%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             EEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCc-cccCCCCCCCeeecc-CCcCCCCCCcccCCCCCCcEEEc
Q 017764           75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFG-HNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P-~~l~~l~~L~~L~Ls-~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      +++|+|++|.|+...+..|.++++|++|+|++|.+...++ ..|..++.++++++. .|++....+..+.++++|++|++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555442222234445555555555554443322 234444455544443 23343333334444455555555


Q ss_pred             cCCCCC
Q 017764          153 DNNDFV  158 (366)
Q Consensus       153 ~~N~l~  158 (366)
                      ++|++.
T Consensus       111 ~~~~l~  116 (242)
T d1xwdc1         111 SNTGIK  116 (242)
T ss_dssp             ESCCCC
T ss_pred             chhhhc
Confidence            555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.8e-08  Score=86.80  Aligned_cols=105  Identities=9%  Similarity=0.109  Sum_probs=85.3

Q ss_pred             EEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCc-ccCCCCCCcEEEccC-
Q 017764           77 NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDN-  154 (366)
Q Consensus        77 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~L~L~~-  154 (366)
                      .++.++.+++ .+|..+.  +++++|+|++|.++...+..|.++++|++|+|++|.+...++. .|..++.++.|++.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3445566777 6777654  5899999999999865556789999999999999999876654 577899999998764 


Q ss_pred             CCCCCCChhhhhCCCCCCEEeccCCCCccc
Q 017764          155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSA  184 (366)
Q Consensus       155 N~l~g~iP~~l~~l~~L~~L~l~~N~l~g~  184 (366)
                      |++....+..|.++++|++|++++|.+...
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             ccccccccccccccccccccccchhhhccc
Confidence            677767777889999999999999998753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.6e-08  Score=94.07  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             CEEEEEccCCCCCCc-CcccccCCCCcCEEEccCCCCCC----CCccccCCCCCCCeeeccCCcCCCC----CCcccC-C
Q 017764           74 KVVNLNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNFSGP----LPNDLG-I  143 (366)
Q Consensus        74 ~v~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g----~~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~-~  143 (366)
                      +|++|||++|++++. +..-+..+++|++|+|++|.++.    .+...+..+++|++|||++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            589999999999853 23335678999999999999873    2445567899999999999998521    222232 2


Q ss_pred             CCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764          144 NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       144 l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      ..+|++|+|++|+++..    ++..+..+++|++|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            35799999999999753    45567789999999999999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.23  E-value=2.7e-06  Score=77.10  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=74.9

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCcccCCCCCCcEEEc
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL  152 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L  152 (366)
                      .+++.|+|++|+|+ .+|..+   .+|+.|++++|.++ .++. +  .+.|++|++++|.+. .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            47899999999998 778654   57899999999987 3442 1  246999999999998 6774 678999999999


Q ss_pred             cCCCCCCCCh------------------hhhhCCCCCCEEeccCCCCc
Q 017764          153 DNNDFVGSLS------------------PEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       153 ~~N~l~g~iP------------------~~l~~l~~L~~L~l~~N~l~  182 (366)
                      ++|.+.....                  ..+..+..++.|++++|.+.
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            9998774322                  12344566666666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-07  Score=76.42  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             ccCCCCcCEEEccCCCCCCC--CccccCCCCCCCeeeccCCcCCCCCCc-ccCCCCCCcEEEccCCCCCCCChh------
Q 017764           93 IQSLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTILLLDNNDFVGSLSP------  163 (366)
Q Consensus        93 l~~L~~L~~L~Ls~N~l~g~--~P~~l~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~L~L~~N~l~g~iP~------  163 (366)
                      ..+++.|++|+|++|.++..  ++..+..+++|+.|+|++|.++ .+++ .......|+.|+|++|.+......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34577788888888887743  2344556777888888888877 3433 222334677788888877755432      


Q ss_pred             -hhhCCCCCCEEe
Q 017764          164 -EIYKLQVLSESQ  175 (366)
Q Consensus       164 -~l~~l~~L~~L~  175 (366)
                       .+..+++|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             245677777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.10  E-value=2.8e-07  Score=84.80  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CCEEEEEccCCCCCCc-----CcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCC----c
Q 017764           73 GKVVNLNLKDLCLEGT-----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLP----N  139 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~-----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP----~  139 (366)
                      ..++.|+|++|.+...     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.+++.-.    .
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            4566777777766521     223355666777777777766422    23445566677777777776653211    1


Q ss_pred             ccC--CCCCCcEEEccCCCCCCC----Chhhh-hCCCCCCEEeccCCCCc
Q 017764          140 DLG--INHSLTILLLDNNDFVGS----LSPEI-YKLQVLSESQVDEGQLS  182 (366)
Q Consensus       140 ~l~--~l~~L~~L~L~~N~l~g~----iP~~l-~~l~~L~~L~l~~N~l~  182 (366)
                      .+.  ....|++|+|++|+++..    +...+ .++++|++|++++|+|.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            121  224577777777766532    12223 24566777777777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.4e-07  Score=79.99  Aligned_cols=112  Identities=17%  Similarity=0.241  Sum_probs=72.1

Q ss_pred             CCEEEEEccCCCCCCcCcccccCCCCcCEEEccCC-CCCCC-CccccCCCCCCCeeeccCC-cCCCC-------------
Q 017764           73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN-SFSGI-IPEGFGELEELEVLDFGHN-NFSGP-------------  136 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~-~P~~l~~l~~L~~L~Ls~N-~l~g~-------------  136 (366)
                      .++++|+|+++.+++.....+.++++|++|+|+++ .++.. +..-+..+++|++|+++++ .++..             
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            46777777777776666666777777777777774 44421 1112234566666666653 22110             


Q ss_pred             ----------------CCcccCCCCCCcEEEccCC-CCCCCChhhhhCCCCCCEEeccC-CCCccc
Q 017764          137 ----------------LPNDLGINHSLTILLLDNN-DFVGSLSPEIYKLQVLSESQVDE-GQLSSA  184 (366)
Q Consensus       137 ----------------lP~~l~~l~~L~~L~L~~N-~l~g~iP~~l~~l~~L~~L~l~~-N~l~g~  184 (366)
                                      +.....++++|++|+|++| .+++.....+.++++|++|++++ +.++..
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence                            0001134688999999986 57777778889999999999998 466643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.8e-08  Score=80.71  Aligned_cols=104  Identities=21%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             EEEEccCCCCCCcCcccccCCCCcCEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC--CCcccCCCCCCcEEEcc
Q 017764           76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDLGINHSLTILLLD  153 (366)
Q Consensus        76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--lP~~l~~l~~L~~L~L~  153 (366)
                      ..|+++++...    +.+..+..+..+++.+|... .++..+..+++|++|+|++|+++..  ++..+..+++|+.|+|+
T Consensus        25 ~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          25 QALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             CCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             CeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence            34566554422    22344444444554444332 3344445789999999999999843  22345678999999999


Q ss_pred             CCCCCCCChh-hhhCCCCCCEEeccCCCCcccC
Q 017764          154 NNDFVGSLSP-EIYKLQVLSESQVDEGQLSSAA  185 (366)
Q Consensus       154 ~N~l~g~iP~-~l~~l~~L~~L~l~~N~l~g~i  185 (366)
                      +|.++ .+++ .+....+|+.|++++|+++...
T Consensus       100 ~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1         100 GNELK-SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             TSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             cCccc-cchhhhhhhccccceeecCCCCcCcCc
Confidence            99999 4444 4445568999999999997554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.2e-07  Score=83.46  Aligned_cols=111  Identities=20%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             CCEEEEEccCCCCCCcCccc----c-cCCCCcCEEEccCCCCCCCCcc----ccCCCCCCCeeeccCCcCCCC----CCc
Q 017764           73 GKVVNLNLKDLCLEGTLAPE----I-QSLTHIKSIILRNNSFSGIIPE----GFGELEELEVLDFGHNNFSGP----LPN  139 (366)
Q Consensus        73 ~~v~~L~L~~n~l~g~~p~~----l-~~L~~L~~L~Ls~N~l~g~~P~----~l~~l~~L~~L~Ls~N~l~g~----lP~  139 (366)
                      ..++.+++++|.++..-...    + .....|+.+++++|.++.....    .+....+|++|+|++|+++..    +..
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            56788899988876321111    1 2345788999998888754222    234456789999999988632    233


Q ss_pred             ccC-CCCCCcEEEccCCCCCCC----ChhhhhCCCCCCEEeccCCCCcc
Q 017764          140 DLG-INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS  183 (366)
Q Consensus       140 ~l~-~l~~L~~L~L~~N~l~g~----iP~~l~~l~~L~~L~l~~N~l~g  183 (366)
                      .+. ....|++|+|++|.|+..    +...+..+++|++|+|++|+|+.
T Consensus       363 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            333 356788999999988732    44556777889999999998874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.89  E-value=1.1e-06  Score=80.70  Aligned_cols=90  Identities=21%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             ccCCCCcCEEEccCCCCCCC-----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCCChh
Q 017764           93 IQSLTHIKSIILRNNSFSGI-----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGSLSP  163 (366)
Q Consensus        93 l~~L~~L~~L~Ls~N~l~g~-----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~iP~  163 (366)
                      +.....|++|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.+++.-..
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            34455666666666666521     223345566666666666665421    223345566666667766666532111


Q ss_pred             ----hhhC--CCCCCEEeccCCCCc
Q 017764          164 ----EIYK--LQVLSESQVDEGQLS  182 (366)
Q Consensus       164 ----~l~~--l~~L~~L~l~~N~l~  182 (366)
                          .+..  ...|++|++++|+++
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCC
Confidence                2222  245666777666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=7.3e-06  Score=73.25  Aligned_cols=107  Identities=15%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             CCEEEEEccCC-CCCCc-CcccccC-CCCcCEEEccCC--CCCCC-CccccCCCCCCCeeeccCC-cCCCCCCcccCCCC
Q 017764           73 GKVVNLNLKDL-CLEGT-LAPEIQS-LTHIKSIILRNN--SFSGI-IPEGFGELEELEVLDFGHN-NFSGPLPNDLGINH  145 (366)
Q Consensus        73 ~~v~~L~L~~n-~l~g~-~p~~l~~-L~~L~~L~Ls~N--~l~g~-~P~~l~~l~~L~~L~Ls~N-~l~g~lP~~l~~l~  145 (366)
                      .++++|+|+++ .++.. +...+.. .++|+.|++++.  .++.. +...+.++++|++|++++| .+++.....+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            57999999885 44321 2222333 468999999864  34322 2233456789999999886 46766677788899


Q ss_pred             CCcEEEccC-CCCCCCChhhhhCCCCCCEEeccCC
Q 017764          146 SLTILLLDN-NDFVGSLSPEIYKLQVLSESQVDEG  179 (366)
Q Consensus       146 ~L~~L~L~~-N~l~g~iP~~l~~l~~L~~L~l~~N  179 (366)
                      +|++|+|++ +.++......++++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999999998 4677666667888999999999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=1.4e-05  Score=65.58  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             CCEEEEEccCC-CCCCc----CcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCc
Q 017764           73 GKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPN  139 (366)
Q Consensus        73 ~~v~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~  139 (366)
                      ..+++|+|+++ .++..    +-..+...+.|++|+|++|.+...    +-..+...+.|++|+|++|.++..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            46889999874 45422    333566778899999999988632    223445568899999999988742    122


Q ss_pred             ccCCCCCCcEEEccCCCCCCC-------ChhhhhCCCCCCEEeccCCCC
Q 017764          140 DLGINHSLTILLLDNNDFVGS-------LSPEIYKLQVLSESQVDEGQL  181 (366)
Q Consensus       140 ~l~~l~~L~~L~L~~N~l~g~-------iP~~l~~l~~L~~L~l~~N~l  181 (366)
                      .+...++|+.|+|++|.+...       +-..+...++|+.|+++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            456678899999998876521       234456678899999877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.08  E-value=0.00011  Score=60.01  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             cCCCCcCEEEccCC-CCCCC----CccccCCCCCCCeeeccCCcCCCC----CCcccCCCCCCcEEEccCCCCCCC----
Q 017764           94 QSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVGS----  160 (366)
Q Consensus        94 ~~L~~L~~L~Ls~N-~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~----  160 (366)
                      .+.+.|++|+|+++ .++..    +-..+...++|++|+|++|.+...    +-..+...+.|+.|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35588999999974 56532    234566778999999999998732    122344568899999999998742    


Q ss_pred             ChhhhhCCCCCCEEeccCCCCc
Q 017764          161 LSPEIYKLQVLSESQVDEGQLS  182 (366)
Q Consensus       161 iP~~l~~l~~L~~L~l~~N~l~  182 (366)
                      +-..+...++|++|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            1224567788999999999764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.67  E-value=0.00013  Score=59.36  Aligned_cols=109  Identities=18%  Similarity=0.158  Sum_probs=75.8

Q ss_pred             CCEEEEEccC-CCCCCc----CcccccCCCCcCEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC----CCc
Q 017764           73 GKVVNLNLKD-LCLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPN  139 (366)
Q Consensus        73 ~~v~~L~L~~-n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~----lP~  139 (366)
                      ..++.|+|++ +.++..    +-..+...++|++|+|++|.++..    +-..+.....|+.+++++|.+...    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4688999987 456422    334466788999999999988743    223455678899999999988643    223


Q ss_pred             ccCCCCCCcEEEc--cCCCCCC----CChhhhhCCCCCCEEeccCCCC
Q 017764          140 DLGINHSLTILLL--DNNDFVG----SLSPEIYKLQVLSESQVDEGQL  181 (366)
Q Consensus       140 ~l~~l~~L~~L~L--~~N~l~g----~iP~~l~~l~~L~~L~l~~N~l  181 (366)
                      .+...++|+.++|  ++|.+..    .+-..+...++|+.|+++.|..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4566788887666  4566642    2334566889999999987754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.54  E-value=0.0052  Score=49.29  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             ccCCCCcCEEEccC-CCCCCC----CccccCCCCCCCeeeccCCcCCCCCC----cccCCCCCCcEEEccCCCCCCC---
Q 017764           93 IQSLTHIKSIILRN-NSFSGI----IPEGFGELEELEVLDFGHNNFSGPLP----NDLGINHSLTILLLDNNDFVGS---  160 (366)
Q Consensus        93 l~~L~~L~~L~Ls~-N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~lP----~~l~~l~~L~~L~L~~N~l~g~---  160 (366)
                      ..+.+.|++|+|++ +.++..    +-..+...++|++|+|++|.++...-    ..+....+|+.|++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45668999999997 456532    22445678899999999998864322    2345568999999999988633   


Q ss_pred             -ChhhhhCCCCCCEEecc--CCCCc
Q 017764          161 -LSPEIYKLQVLSESQVD--EGQLS  182 (366)
Q Consensus       161 -iP~~l~~l~~L~~L~l~--~N~l~  182 (366)
                       +-..+...++|+.++|+  +|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence             22456778899986664  55553